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-rw-r--r--gnu/packages/patches/gemmi-fix-pegtl-usage.patch31
-rw-r--r--gnu/packages/patches/gemmi-fix-sajson-types.patch11
2 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/patches/gemmi-fix-pegtl-usage.patch b/gnu/packages/patches/gemmi-fix-pegtl-usage.patch
new file mode 100644
index 0000000000..3667474847
--- /dev/null
+++ b/gnu/packages/patches/gemmi-fix-pegtl-usage.patch
@@ -0,0 +1,31 @@
+Use the definitions from (newer) upstream PEGTL.
+
+diff --git a/include/gemmi/cif.hpp b/include/gemmi/cif.hpp
+index c7ffdb44..35d24210 100644
+--- a/include/gemmi/cif.hpp
++++ b/include/gemmi/cif.hpp
+@@ -37,7 +37,6 @@ namespace pegtl = tao::pegtl;
+ namespace rules {
+ 
+   template<int TableVal> struct lookup_char {
+-    using analyze_t = pegtl::analysis::generic<pegtl::analysis::rule_type::ANY>;
+     template<typename Input> static bool match(Input& in) {
+       if (!in.empty() && cif::char_table(in.peek_char()) == TableVal) {
+         if (TableVal == 2)  // this set includes new-line
+@@ -71,11 +70,11 @@ namespace rules {
+   struct ws_or_eof : pegtl::sor<whitespace, pegtl::eof> {};
+ 
+   // (b) Reserved words.
+-  struct str_data : TAOCPP_PEGTL_ISTRING("data_") {};
+-  struct str_loop : TAOCPP_PEGTL_ISTRING("loop_") {};
+-  struct str_global : TAOCPP_PEGTL_ISTRING("global_") {};
+-  struct str_save : TAOCPP_PEGTL_ISTRING("save_") {};
+-  struct str_stop : TAOCPP_PEGTL_ISTRING("stop_") {};
++  struct str_data : TAO_PEGTL_ISTRING("data_") {};
++  struct str_loop : TAO_PEGTL_ISTRING("loop_") {};
++  struct str_global : TAO_PEGTL_ISTRING("global_") {};
++  struct str_save : TAO_PEGTL_ISTRING("save_") {};
++  struct str_stop : TAO_PEGTL_ISTRING("stop_") {};
+   struct keyword : pegtl::sor<str_data, str_loop, str_global,
+                               str_save, str_stop> {};
+ 
diff --git a/gnu/packages/patches/gemmi-fix-sajson-types.patch b/gnu/packages/patches/gemmi-fix-sajson-types.patch
new file mode 100644
index 0000000000..9633ddac8b
--- /dev/null
+++ b/gnu/packages/patches/gemmi-fix-sajson-types.patch
@@ -0,0 +1,11 @@
+diff -ur a/include/gemmi/json.hpp b/include/gemmi/json.hpp
+--- a/include/gemmi/json.hpp
++++ b/include/gemmi/json.hpp
+@@ -38,6 +38,7 @@
+ 
+ inline std::string as_cif_value(const sajson::value& val) {
+   switch (val.get_type()) {
++    case sajson::TYPE_INTEGER:
+     case sajson::TYPE_DOUBLE:
+       return val.as_string();
+     case sajson::TYPE_NULL: