1 files changed, 0 insertions, 33 deletions
diff --git a/gnu/packages/patches/pigx-rnaseq-no-citeproc.patch b/gnu/packages/patches/pigx-rnaseq-no-citeproc.patch
deleted file mode 100644
index 366ae3890a..0000000000
--- a/gnu/packages/patches/pigx-rnaseq-no-citeproc.patch
+++ /dev/null
@@ -1,33 +0,0 @@
-diff -Naur pigx_rnaseq-0.0.19/configure.ac pigx_rnaseq-0.0.19.patched/configure.ac
---- pigx_rnaseq-0.0.19/configure.ac	2021-07-23 14:01:00.304391428 +0200
-+++ pigx_rnaseq-0.0.19.patched/configure.ac	2021-10-06 13:51:29.512960106 +0200
-@@ -38,7 +38,6 @@
- find_or_override_prog([GNUBASH],         [bash])
- find_or_override_prog([SNAKEMAKE],       [snakemake])
- find_or_override_prog([PANDOC],          [pandoc])
--find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc])
- find_or_override_prog([STAR],            [STAR])
- find_or_override_prog([HISAT2],          [hisat2])
- find_or_override_prog([HISAT2_BUILD],    [hisat2-build])
-diff -Naur pigx_rnaseq-0.0.19/Makefile.in pigx_rnaseq-0.0.19.patched/Makefile.in
---- pigx_rnaseq-0.0.19/Makefile.in	2021-08-13 13:40:10.402922844 +0200
-+++ pigx_rnaseq-0.0.19.patched/Makefile.in	2021-10-06 13:51:04.052247524 +0200
-@@ -410,7 +410,6 @@
- PACKAGE_URL = @PACKAGE_URL@
- PACKAGE_VERSION = @PACKAGE_VERSION@
- PANDOC = @PANDOC@
--PANDOC_CITEPROC = @PANDOC_CITEPROC@
- PATH_SEPARATOR = @PATH_SEPARATOR@
- PYTHON = @PYTHON@
- PYTHONPATH = @PYTHONPATH@
-diff -Naur pigx_rnaseq-0.0.19/pigx-common/common/pigx-runner.in pigx_rnaseq-0.0.19.patched/pigx-common/common/pigx-runner.in
---- pigx_rnaseq-0.0.19/pigx-common/common/pigx-runner.in	2021-08-13 13:27:50.494352532 +0200
-+++ pigx_rnaseq-0.0.19.patched/pigx-common/common/pigx-runner.in	2021-10-06 13:51:38.798220108 +0200
-@@ -379,7 +379,6 @@
-     if path.exists(bin): shutil.rmtree(bin)
-     os.makedirs(bin, exist_ok=True)
-     os.symlink('@PANDOC@', path.join(bin, "pandoc"))
--    os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc"))
-     os.symlink('@RSCRIPT@', path.join(bin, "Rscript"))
-     os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH']
-     os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH']