diff options
Diffstat (limited to 'gnu/packages/patches')
| -rw-r--r-- | gnu/packages/patches/emacs-zones-called-interactively.patch | 18 | ||||
| -rw-r--r-- | gnu/packages/patches/khmer-use-libraries.patch | 16 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-default-parameters-1.patch | 26 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-default-parameters-2.patch | 58 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-lcommon-h.patch | 13 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-using-namespace-std.patch | 43 | ||||
| -rw-r--r-- | gnu/packages/patches/leela-zero-gtest.patch | 40 | ||||
| -rw-r--r-- | gnu/packages/patches/lrcalc-includes.patch | 92 | ||||
| -rw-r--r-- | gnu/packages/patches/python-pyatspi-python-37.patch | 82 |
9 files changed, 363 insertions, 25 deletions
diff --git a/gnu/packages/patches/emacs-zones-called-interactively.patch b/gnu/packages/patches/emacs-zones-called-interactively.patch index b60f390a7e..eefcfdd12e 100644 --- a/gnu/packages/patches/emacs-zones-called-interactively.patch +++ b/gnu/packages/patches/emacs-zones-called-interactively.patch @@ -1,4 +1,4 @@ -From fb56fbb706804215ef9af0cc575db97c373046c6 Mon Sep 17 00:00:00 2001 +From 81603e53ebaae0f0b23c4c52c7dab83e808964ec Mon Sep 17 00:00:00 2001 From: Brian Leung <bkleung89@gmail.com> Date: Sun, 17 Mar 2019 01:32:04 +0100 Subject: [PATCH] This patch silences the byte-compiler. @@ -8,36 +8,36 @@ Subject: [PATCH] This patch silences the byte-compiler. 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/zones.el b/zones.el -index 1bf94f0..94fa9a6 100644 +index ca88d48..594ea36 100644 --- a/zones.el +++ b/zones.el -@@ -1031,7 +1031,7 @@ You can use `C-x n x' to widen to a previous buffer restriction. +@@ -1075,7 +1075,7 @@ You can use `C-x n x' to widen to a previous buffer restriction. This is a destructive operation. The list structure of the variable value can be modified." - (zz-narrow-advice (interactive-p))) -+ (zz-narrow-advice (called-interactively-p))) ++ (zz-narrow-advice (called-interactively-p 'interactive))) (defadvice narrow-to-defun (after zz-add-zone--defun activate) "Push the defun limits to the current `zz-izones-var'. -@@ -1039,7 +1039,7 @@ You can use `C-x n x' to widen to a previous buffer restriction. +@@ -1083,7 +1083,7 @@ You can use `C-x n x' to widen to a previous buffer restriction. This is a destructive operation. The list structure of the variable value can be modified." - (zz-narrow-advice (interactive-p))) -+ (zz-narrow-advice (called-interactively-p))) ++ (zz-narrow-advice (called-interactively-p 'interactive))) ;; Call `zz-add-zone' if interactive or `zz-add-zone-anyway-p'. ;; -@@ -1049,7 +1049,7 @@ You can use `C-x n x' to widen to a previous buffer restriction. +@@ -1093,7 +1093,7 @@ You can use `C-x n x' to widen to a previous buffer restriction. This is a destructive operation. The list structure of the variable value can be modified." - (zz-narrow-advice (interactive-p))) -+ (zz-narrow-advice (called-interactively-p))) ++ (zz-narrow-advice (called-interactively-p 'interactive))) ;;(@* "General Commands") -- -2.21.0 +2.22.0 diff --git a/gnu/packages/patches/khmer-use-libraries.patch b/gnu/packages/patches/khmer-use-libraries.patch deleted file mode 100644 index 47d163a99a..0000000000 --- a/gnu/packages/patches/khmer-use-libraries.patch +++ /dev/null @@ -1,16 +0,0 @@ -Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot -currently be achieved using "--library z,bz2" as instructed in the setup.py. - -diff --git a/setup.cfg b/setup.cfg -index c054092..080992e 100644 ---- a/setup.cfg -+++ b/setup.cfg -@@ -1,7 +1,7 @@ - [build_ext] - define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB - undef = NO_UNIQUE_RC --# libraries = z,bz2 -+libraries = z,bz2 - ## if using system libraries - include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher - # include-dirs = lib diff --git a/gnu/packages/patches/lcalc-default-parameters-1.patch b/gnu/packages/patches/lcalc-default-parameters-1.patch new file mode 100644 index 0000000000..19b0776320 --- /dev/null +++ b/gnu/packages/patches/lcalc-default-parameters-1.patch @@ -0,0 +1,26 @@ +Patch taken from the Sage packaging system. + +diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h +--- lcalc-1.23-vanilla/include/Ldirichlet_series.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h 2014-04-21 14:37:59.027464849 +0200 +@@ -43,7 +43,7 @@ + //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + template <class ttype> + Complex L_function <ttype>:: +-dirichlet_series(Complex s, long long N=-1) ++dirichlet_series(Complex s, long long N) + { + Complex z=0.; + long long m,n; +diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h +--- lcalc-1.23-vanilla/include/L.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23-fixed-gcc.4.9/include/L.h 2014-04-21 14:32:04.003467348 +0200 +@@ -491,7 +491,7 @@ + + //#include "Ldirichlet_series.h" //for computing Dirichlet series + Complex partial_dirichlet_series(Complex s, long long N1, long long N2); +- Complex dirichlet_series(Complex s, long long N); ++ Complex dirichlet_series(Complex s, long long N=-1LL); + + //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series + //void compute_taylor_series(int N, int K, Complex s_0, Complex *series); diff --git a/gnu/packages/patches/lcalc-default-parameters-2.patch b/gnu/packages/patches/lcalc-default-parameters-2.patch new file mode 100644 index 0000000000..1d881ee0c4 --- /dev/null +++ b/gnu/packages/patches/lcalc-default-parameters-2.patch @@ -0,0 +1,58 @@ +Patch taken from the Sage packaging system. + +--- lcalc-1.23/include/Lgamma.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23/include/Lgamma.h 2014-05-18 21:15:27.786889718 +0200 +@@ -77,7 +77,7 @@ + //n=0 should just give log_GAMMA(z)... thus making log_GAMMA + //code obsolete. But leave log_GAMMA intact anyways. + template <class ttype> +-precise(ttype) log_GAMMA (ttype z,int n=0) ++precise(ttype) log_GAMMA (ttype z,int n) + { + int M; + precise(ttype) log_G,r,r2,y; +@@ -230,7 +230,7 @@ + //value exp_w which holds exp(-w) + //computes G(z,w), so there's an extra w^(-z) factor. + template <class ttype> +-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false) ++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle) + { + + Complex G; +@@ -334,7 +334,7 @@ + + + template <class ttype> +-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false) //computes G(z,w) via continued fraction ++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via continued fraction + { + + ttype G; +@@ -424,7 +424,7 @@ + } + + template <class ttype> +-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false) //computes G(z,w) via asymptotic series ++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via asymptotic series + { + + if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl; +@@ -446,7 +446,7 @@ + + + template <class ttype> +-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false) //computes g(z,w) ++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle) //computes g(z,w) + { + + ttype g; +@@ -604,7 +604,7 @@ + } + + template <class ttype> +-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme") ++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method) + { + Complex SUM=0; + diff --git a/gnu/packages/patches/lcalc-lcommon-h.patch b/gnu/packages/patches/lcalc-lcommon-h.patch new file mode 100644 index 0000000000..897956de64 --- /dev/null +++ b/gnu/packages/patches/lcalc-lcommon-h.patch @@ -0,0 +1,13 @@ +Patch taken from the Sage packaging system. + +--- src/include/Lcommon.h 2010-01-31 15:16:45.000000000 +0000 ++++ src/include/Lcommon.h 2011-03-08 21:19:11.849443238 +0000 +@@ -25,7 +25,7 @@ + #ifdef USE_MPFR + inline double lcalc_to_double(const double& x) { return x; } + #endif +-//inline double lcalc_to_double(const long double& x) { return x; } ++inline double lcalc_to_double(const long double& x) { return x; } + inline double lcalc_to_double(const int& x) { return x; } + inline double lcalc_to_double(const long long& x) { return x; } + inline double lcalc_to_double(const short& x) { return x; } diff --git a/gnu/packages/patches/lcalc-using-namespace-std.patch b/gnu/packages/patches/lcalc-using-namespace-std.patch new file mode 100644 index 0000000000..6e0075fdc8 --- /dev/null +++ b/gnu/packages/patches/lcalc-using-namespace-std.patch @@ -0,0 +1,43 @@ +Patch taken from the Sage packaging system. + +diff --git a/include/Lcommon.h b/include/Lcommon.h +index 1b3be43..bf40532 100644 +--- a/include/Lcommon.h ++++ b/include/Lcommon.h +@@ -48,7 +48,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th + + // Loop i from m to n + // Useful in tidying up most for loops +-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) ++#define loop(i,m,n) for(auto i=(m); i!=(n); i++) + + // A class for calculations involving polynomials of small degree + // Not efficient enough for huge polynomials +diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h +index 86ae4df..33c560c 100644 +--- a/include/Lcommon_ld.h ++++ b/include/Lcommon_ld.h +@@ -53,7 +53,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th + + // Loop i from m to n + // Useful in tidying up most for loops +-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) ++#define loop(i,m,n) for(auto i=(m); i!=(n); i++) + + // A class for calculations involving polynomials of small degree + // Not efficient enough for huge polynomials +diff --git a/include/Lglobals.h b/include/Lglobals.h +index 60002e4..ca2606c 100644 +--- a/include/Lglobals.h ++++ b/include/Lglobals.h +@@ -24,9 +24,9 @@ + #ifndef Lglobals_H + #define Lglobals_H + ++#include <valarray> + using namespace std; + +-#include <valarray> + #ifdef USE_MPFR + #include "Lgmpfrxx.h" + typedef mpfr_class Double; diff --git a/gnu/packages/patches/leela-zero-gtest.patch b/gnu/packages/patches/leela-zero-gtest.patch new file mode 100644 index 0000000000..7291b4ab72 --- /dev/null +++ b/gnu/packages/patches/leela-zero-gtest.patch @@ -0,0 +1,40 @@ +Use shared gtest instead of submodule + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 617e4b2..2857875 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -18,7 +18,6 @@ set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/cmake/Modules/") + include(GNUInstallDirs) + + project(leelaz) +-add_subdirectory(gtest EXCLUDE_FROM_ALL) # We don't want to install gtest, exclude it from `all` + + # Required Packages + set(Boost_MIN_VERSION "1.58.0") +@@ -27,6 +26,7 @@ find_package(Boost 1.58.0 REQUIRED program_options filesystem) + find_package(Threads REQUIRED) + find_package(ZLIB REQUIRED) + find_package(OpenCL REQUIRED) ++find_package(GTest REQUIRED) + # We need OpenBLAS for now, because we make some specific + # calls. Ideally we'd use OpenBLAS is possible and fall back to + # not doing those calls if it's not present. +@@ -93,6 +93,7 @@ include_directories(${IncludePath}) + include_directories(${Boost_INCLUDE_DIRS}) + include_directories(${OpenCL_INCLUDE_DIRS}) + include_directories(${ZLIB_INCLUDE_DIRS}) ++include_directories(${GTEST_INCLUDE_DIRS}) + + if((UNIX AND NOT APPLE) OR WIN32) + include_directories(${BLAS_INCLUDE_DIRS}) +@@ -141,7 +142,8 @@ target_link_libraries(tests ${Boost_LIBRARIES}) + target_link_libraries(tests ${BLAS_LIBRARIES}) + target_link_libraries(tests ${OpenCL_LIBRARIES}) + target_link_libraries(tests ${ZLIB_LIBRARIES}) +-target_link_libraries(tests gtest_main ${CMAKE_THREAD_LIBS_INIT}) ++target_link_libraries(tests ${GTEST_BOTH_LIBRARIES}) ++target_link_libraries(tests ${CMAKE_THREAD_LIBS_INIT}) + + include(GetGitRevisionDescription) + git_describe(VERSION --tags) diff --git a/gnu/packages/patches/lrcalc-includes.patch b/gnu/packages/patches/lrcalc-includes.patch new file mode 100644 index 0000000000..e15286905b --- /dev/null +++ b/gnu/packages/patches/lrcalc-includes.patch @@ -0,0 +1,92 @@ +Patch taken from the Sage packaging system. + +From 4a5e1c8c3c11efdb1cbb4239825a6bf4bf1c52f8 Mon Sep 17 00:00:00 2001 +From: Anders Skovsted Buch <asbuch@math.rutgers.edu> +Date: Sun, 29 Nov 2015 16:25:56 -0500 +Subject: [PATCH] Patch by Jeroen Demeyer to change include <vector.h> to + "vector.h", plus similar cases. + +--- + src/lrcalc.c | 2 +- + src/maple.c | 4 ++-- + src/schublib.h | 2 +- + src/symfcn.c | 6 +++--- + src/symfcn.h | 4 ++-- + 5 files changed, 9 insertions(+), 9 deletions(-) + +diff --git a/src/lrcalc.c b/src/lrcalc.c +index aff3f75..60df49e 100644 +--- a/src/lrcalc.c ++++ b/src/lrcalc.c +@@ -8,7 +8,7 @@ + #include <stdlib.h> + extern char *optarg; + +-#include <vectarg.h> ++#include "vectarg.h" + + #include "symfcn.h" + #include "maple.h" +diff --git a/src/maple.c b/src/maple.c +index fdc0768..a5f4d14 100644 +--- a/src/maple.c ++++ b/src/maple.c +@@ -4,8 +4,8 @@ + */ + + #include <stdio.h> +-#include <vector.h> +-#include <hashtab.h> ++#include "vector.h" ++#include "hashtab.h" + #include "maple.h" + + +diff --git a/src/schublib.h b/src/schublib.h +index a8e8511..864850c 100644 +--- a/src/schublib.h ++++ b/src/schublib.h +@@ -1,7 +1,7 @@ + #ifndef _SCHUBLIB_H + #define _SCHUBLIB_H + +-#include <hashtab.h> ++#include "hashtab.h" + + hashtab *trans(vector *w, int vars, hashtab *res); + hashtab *monk(int i, hashtab *slc, int rank); +diff --git a/src/symfcn.c b/src/symfcn.c +index 4ffbe4b..fd5df5d 100644 +--- a/src/symfcn.c ++++ b/src/symfcn.c +@@ -5,9 +5,9 @@ + + #include <stdio.h> + +-#include <alloc.h> +-#include <vector.h> +-#include <hashtab.h> ++#include "alloc.h" ++#include "vector.h" ++#include "hashtab.h" + + #include "symfcn.h" + +diff --git a/src/symfcn.h b/src/symfcn.h +index b8543b1..29bb00d 100644 +--- a/src/symfcn.h ++++ b/src/symfcn.h +@@ -1,8 +1,8 @@ + #ifndef _SYMFCN_H + #define _SYMFCN_H + +-#include <hashtab.h> +-#include <vector.h> ++#include "hashtab.h" ++#include "vector.h" + + int part_itr_sz(vector *part); + int part_itr_sub(vector *part, vector *outer); +-- +2.1.1.1.g1fb337f + diff --git a/gnu/packages/patches/python-pyatspi-python-37.patch b/gnu/packages/patches/python-pyatspi-python-37.patch new file mode 100644 index 0000000000..caa6aea39e --- /dev/null +++ b/gnu/packages/patches/python-pyatspi-python-37.patch @@ -0,0 +1,82 @@ +From 29a7b929f7f1160b643dc5f5911533887173fcff Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Miro=20Hron=C4=8Dok?= <miro@hroncok.cz> +Date: Thu, 28 Jun 2018 17:10:33 +0200 +Subject: [PATCH] Rename async to asynchronous, keep backwards comaptibility + +async is a keyword in Python 3.7 and keeping it results in SyntaxError. + +Fixes https://gitlab.gnome.org/GNOME/pyatspi2/issues/1 +--- + pyatspi/registry.py | 35 +++++++++++++++++++++++++++-------- + 1 file changed, 27 insertions(+), 8 deletions(-) + +diff --git a/pyatspi/registry.py b/pyatspi/registry.py +index cb28395..f73ee16 100644 +--- a/pyatspi/registry.py ++++ b/pyatspi/registry.py +@@ -50,9 +50,9 @@ class Registry(object): + reference to the Accessibility.Registry singleton. Doing so is harmless and + has no point. + +- @@ivar async: Should event dispatch to local listeners be decoupled from event +- receiving from the registry? +- @@type async: boolean ++ @@ivar asynchronous: Should event dispatch to local listeners be decoupled ++ from event receiving from the registry? ++ @@type asynchronous: boolean + @@ivar reg: Reference to the real, wrapped registry object + @@type reg: Accessibility.Registry + @@ivar dev: Reference to the device controller +@@ -111,25 +111,44 @@ class Registry(object): + + self.has_implementations = True + +- self.async = False # not fully supported yet ++ self.asynchronous = False # not fully supported yet + self.started = False + self.event_listeners = dict() + ++ def __getattr__(self, name): ++ """ ++ For backwards compatibility with old API ++ """ ++ if name == 'async': ++ return self.asynchronous ++ return object.__getattr__(self, name) ++ ++ def __setattr__(self, name, value): ++ """ ++ For backwards compatibility with old API ++ """ ++ if name == 'async': ++ self.asynchronous = value ++ object.__setattr__(self, name, value) ++ + def _set_default_registry (self): + self._set_registry (MAIN_LOOP_GLIB) + +- def start(self, async=False, gil=True): ++ def start(self, asynchronous=False, gil=True, **kwargs): + """ + Enter the main loop to start receiving and dispatching events. + +- @@param async: Should event dispatch be asynchronous (decoupled) from +- event receiving from the AT-SPI registry? +- @@type async: boolean ++ @@param asynchronous: Should event dispatch be asynchronous ++ (decoupled) from event receiving from the AT-SPI registry? ++ @@type asynchronous: boolean + @@param gil: Add an idle callback which releases the Python GIL for a few + milliseconds to allow other threads to run? Necessary if other threads + will be used in this process. + @@type gil: boolean + """ ++ if 'async' in kwargs: ++ # support previous API ++ asynchronous = kwargs['async'] + if not self.has_implementations: + self._set_default_registry () + self.started = True +-- +2.22.0 + |