diff options
Diffstat (limited to 'gnu/packages/patches')
| -rw-r--r-- | gnu/packages/patches/mia-fix-boost-headers.patch | 479 |
1 files changed, 479 insertions, 0 deletions
diff --git a/gnu/packages/patches/mia-fix-boost-headers.patch b/gnu/packages/patches/mia-fix-boost-headers.patch new file mode 100644 index 0000000000..158ab2afeb --- /dev/null +++ b/gnu/packages/patches/mia-fix-boost-headers.patch @@ -0,0 +1,479 @@ +Retrieved from Debian, and added a few "#include <boost/mpl/vector.hpp>" +directives to fix the build. + +diff --git a/addons/hdf5/test_hdf5_3dimage.cc b/addons/hdf5/test_hdf5_3dimage.cc +index a7185618..7a398821 100644 +--- a/addons/hdf5/test_hdf5_3dimage.cc ++++ b/addons/hdf5/test_hdf5_3dimage.cc +@@ -23,7 +23,7 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> ++#include <boost/test/unit_test.hpp> + + #include <addons/hdf5/hdf5_3dimage.hh> + +diff --git a/addons/hdf5/test_hdf5mia.cc b/addons/hdf5/test_hdf5mia.cc +index 3d62106e..8141be07 100644 +--- a/addons/hdf5/test_hdf5mia.cc ++++ b/addons/hdf5/test_hdf5mia.cc +@@ -23,7 +23,6 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + #include <boost/mpl/insert_range.hpp> + + #include <addons/hdf5/hdf5a_mia.hh> +diff --git a/addons/nifti/test_niftiimage.cc b/addons/nifti/test_niftiimage.cc +index 8df3f0b5..840ae585 100644 +--- a/addons/nifti/test_niftiimage.cc ++++ b/addons/nifti/test_niftiimage.cc +@@ -23,8 +23,6 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> +- + + #include <nifti/niftiimage.hh> + #include <unistd.h> +diff --git a/addons/vistaio/test_2dvistaio.cc b/addons/vistaio/test_2dvistaio.cc +index b3da29a0..9b1599dd 100644 +--- a/addons/vistaio/test_2dvistaio.cc ++++ b/addons/vistaio/test_2dvistaio.cc +@@ -23,8 +23,6 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> +- + + #include <vistaio/2dvistaio.hh> + #include <unistd.h> +diff --git a/addons/vistaio/test_3dvistaio.cc b/addons/vistaio/test_3dvistaio.cc +index 93c007d0..c3ae1fdb 100644 +--- a/addons/vistaio/test_3dvistaio.cc ++++ b/addons/vistaio/test_3dvistaio.cc +@@ -23,8 +23,6 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> +- + + #include <vistaio/3dvistaio.hh> + #include <unistd.h> +diff --git a/addons/vtk/test_vtkimage.cc b/addons/vtk/test_vtkimage.cc +index eaf96a6b..8212ef1d 100644 +--- a/addons/vtk/test_vtkimage.cc ++++ b/addons/vtk/test_vtkimage.cc +@@ -23,8 +23,6 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> +- + + #include <vtk/vtkimage.hh> + #include <unistd.h> +diff --git a/mia/2d/creator/test_circle.cc b/mia/2d/creator/test_circle.cc +index 9784e05d..7ca4bab9 100644 +--- a/mia/2d/creator/test_circle.cc ++++ b/mia/2d/creator/test_circle.cc +@@ -21,8 +21,6 @@ + + #include <mia/internal/plugintester.hh> + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> +- + #include <mia/2d/creator/circle.hh> + + using namespace mia; +diff --git a/mia/2d/filter/test_convert.cc b/mia/2d/filter/test_convert.cc +index 80304793..f40d295a 100644 +--- a/mia/2d/filter/test_convert.cc ++++ b/mia/2d/filter/test_convert.cc +@@ -25,7 +25,6 @@ + #include <type_traits> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + #include <boost/mpl/insert_range.hpp> + + +diff --git a/mia/2d/filter/test_morphological.cc b/mia/2d/filter/test_morphological.cc +index 2fc58583..9a004946 100644 +--- a/mia/2d/filter/test_morphological.cc ++++ b/mia/2d/filter/test_morphological.cc +@@ -20,7 +20,6 @@ + + #include <mia/internal/plugintester.hh> + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + #include <mia/2d/filter/morphological.hh> + + namespace bmpl = boost::mpl; +diff --git a/mia/2d/filter/test_sortlabel.cc b/mia/2d/filter/test_sortlabel.cc +index 78464e1a..49c327e3 100644 +--- a/mia/2d/filter/test_sortlabel.cc ++++ b/mia/2d/filter/test_sortlabel.cc +@@ -23,7 +23,6 @@ + #include <mia/2d/filter/sortlabel.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + namespace bmpl = boost::mpl; + + +diff --git a/mia/2d/filter/test_thinning.cc b/mia/2d/filter/test_thinning.cc +index 3ebb2cdc..8bc5b356 100644 +--- a/mia/2d/filter/test_thinning.cc ++++ b/mia/2d/filter/test_thinning.cc +@@ -21,7 +21,6 @@ + + #include <mia/internal/plugintester.hh> + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + #include <mia/2d/filter/thinning.hh> + #include <mia/2d/imagetest.hh> + +diff --git a/mia/2d/test_filter_cast.cc b/mia/2d/test_filter_cast.cc +index e806e14f..91c77398 100644 +--- a/mia/2d/test_filter_cast.cc ++++ b/mia/2d/test_filter_cast.cc +@@ -24,7 +24,7 @@ + #include <mia/internal/autotest.hh> + #include <mia/2d/filter.hh> + +-#include <boost/test/test_case_template.hpp> ++#include <boost/mpl/vector.hpp> + #include <boost/type_traits.hpp> + #include <boost/mpl/list.hpp> + +diff --git a/mia/2d/test_image.cc b/mia/2d/test_image.cc +index c82dc59b..1f602510 100644 +--- a/mia/2d/test_image.cc ++++ b/mia/2d/test_image.cc +@@ -24,6 +24,7 @@ + #include <mia/internal/autotest.hh> + + #include <boost/filesystem/path.hpp> ++#include <boost/mpl/vector.hpp> + + #include <iostream> + +diff --git a/mia/2d/test_interpol.cc b/mia/2d/test_interpol.cc +index d1f3703d..5caafccf 100644 +--- a/mia/2d/test_interpol.cc ++++ b/mia/2d/test_interpol.cc +@@ -23,7 +23,6 @@ + + #include <mia/internal/autotest.hh> + +-#include <boost/test/test_case_template.hpp> + #include <boost/type_traits.hpp> + #include <boost/mpl/list.hpp> + +diff --git a/mia/3d/fifotestfixture.cc b/mia/3d/fifotestfixture.cc +index ab2e7c65..1b6e6bb4 100644 +--- a/mia/3d/fifotestfixture.cc ++++ b/mia/3d/fifotestfixture.cc +@@ -24,7 +24,7 @@ + + #include <climits> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + #include <mia/core/msgstream.hh> + #include <mia/2d/imagetest.hh> + #include <mia/3d/fifotestfixture.hh> +diff --git a/mia/3d/filter/test_convert.cc b/mia/3d/filter/test_convert.cc +index e83032c1..dad9afaa 100644 +--- a/mia/3d/filter/test_convert.cc ++++ b/mia/3d/filter/test_convert.cc +@@ -20,7 +20,6 @@ + + #include <mia/internal/autotest.hh> + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + #include <mia/core/type_traits.hh> + #include <mia/3d/filter/convert.hh> + #include <boost/mpl/insert_range.hpp> +diff --git a/mia/3d/test_image.cc b/mia/3d/test_image.cc +index 18f71892..c21e0d20 100644 +--- a/mia/3d/test_image.cc ++++ b/mia/3d/test_image.cc +@@ -21,7 +21,8 @@ + #include <climits> + #include <boost/test/unit_test_suite.hpp> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> ++#include <boost/mpl/vector.hpp> + + #include <mia/3d/image.hh> + #include <mia/core/filter.hh> +diff --git a/mia/3d/test_imageio.cc b/mia/3d/test_imageio.cc +index 0640a668..7a6b5635 100644 +--- a/mia/3d/test_imageio.cc ++++ b/mia/3d/test_imageio.cc +@@ -20,7 +20,6 @@ + + #include <mia/internal/autotest.hh> + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + #include <boost/mpl/insert_range.hpp> + + #include <mia/core/attribute_names.hh> +diff --git a/mia/core/splinekernel/test_bspline.cc b/mia/core/splinekernel/test_bspline.cc +index 54d6bda3..0abfe443 100644 +--- a/mia/core/splinekernel/test_bspline.cc ++++ b/mia/core/splinekernel/test_bspline.cc +@@ -23,8 +23,6 @@ + #include <mia/core/splinekernel/bspline.hh> + #include <mia/core/interpolator1d.hh> + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> +- + + using namespace mia; + using namespace mia::bsplinekernel; +diff --git a/mia/core/test_cost.cc b/mia/core/test_cost.cc +index 70097b2e..305ca84d 100644 +--- a/mia/core/test_cost.cc ++++ b/mia/core/test_cost.cc +@@ -27,7 +27,7 @@ + #include <mia/core/msgstream.hh> + + #include <boost/test/unit_test_suite.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + #include <boost/test/test_tools.hpp> + + NS_MIA_USE +diff --git a/mia/core/test_cstplan.cc b/mia/core/test_cstplan.cc +index aa241d48..a9e5a0e3 100644 +--- a/mia/core/test_cstplan.cc ++++ b/mia/core/test_cstplan.cc +@@ -23,7 +23,7 @@ + + #include <boost/test/unit_test_suite.hpp> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core/cstplan.hh> + +diff --git a/mia/core/test_dictmap.cc b/mia/core/test_dictmap.cc +index a9217290..fd05fe30 100644 +--- a/mia/core/test_dictmap.cc ++++ b/mia/core/test_dictmap.cc +@@ -26,7 +26,7 @@ + + #include <boost/test/test_tools.hpp> + #include <boost/test/unit_test_suite.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core/dictmap.hh> + #include <mia/core/cmdlineparser.hh> +diff --git a/mia/core/test_fifofilter.cc b/mia/core/test_fifofilter.cc +index 2a066f2e..6e2a385d 100644 +--- a/mia/core/test_fifofilter.cc ++++ b/mia/core/test_fifofilter.cc +@@ -27,7 +27,7 @@ + + #include <boost/test/test_tools.hpp> + #include <boost/test/unit_test_suite.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + + #include <mia/core/cmdlineparser.hh> +diff --git a/mia/core/test_gsl_matrix.cc b/mia/core/test_gsl_matrix.cc +index 4add5f7a..6d16353d 100644 +--- a/mia/core/test_gsl_matrix.cc ++++ b/mia/core/test_gsl_matrix.cc +@@ -25,7 +25,7 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_ALTERNATIVE_INIT_API + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + #include <mia/core/gsl_matrix.hh> + + #include <stdexcept> +diff --git a/mia/core/test_gsl_matrix_vector_ops.cc b/mia/core/test_gsl_matrix_vector_ops.cc +index e5f7d7b9..217020f7 100644 +--- a/mia/core/test_gsl_matrix_vector_ops.cc ++++ b/mia/core/test_gsl_matrix_vector_ops.cc +@@ -28,7 +28,7 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_ALTERNATIVE_INIT_API + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <iostream> + #include <cmath> +diff --git a/mia/core/test_gsl_multimin.cc b/mia/core/test_gsl_multimin.cc +index 5bbc434b..129f578a 100644 +--- a/mia/core/test_gsl_multimin.cc ++++ b/mia/core/test_gsl_multimin.cc +@@ -25,7 +25,7 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_ALTERNATIVE_INIT_API + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + #include <vector> + + #include <mia/core/gsl_multimin.hh> +diff --git a/mia/core/test_gsl_pca.cc b/mia/core/test_gsl_pca.cc +index 436b36b0..12942921 100644 +--- a/mia/core/test_gsl_pca.cc ++++ b/mia/core/test_gsl_pca.cc +@@ -27,7 +27,7 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_ALTERNATIVE_INIT_API + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core/gsl_pca.hh> + +diff --git a/mia/core/test_gsl_vector.cc b/mia/core/test_gsl_vector.cc +index 541c88b8..ba91f159 100644 +--- a/mia/core/test_gsl_vector.cc ++++ b/mia/core/test_gsl_vector.cc +@@ -25,10 +25,9 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_ALTERNATIVE_INIT_API + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> + + #include <mia/core/gsl_vector.hh> + +diff --git a/mia/core/test_interpol.cc b/mia/core/test_interpol.cc +index 36669dc0..2dd5157d 100644 +--- a/mia/core/test_interpol.cc ++++ b/mia/core/test_interpol.cc +@@ -24,7 +24,7 @@ + #include <mia/internal/autotest.hh> + + #include <boost/mpl/vector.hpp> +-#include <boost/test/test_case_template.hpp> ++#include <boost/test/unit_test.hpp> + #include <boost/type_traits.hpp> + #include <boost/filesystem/path.hpp> + +diff --git a/mia/core/test_parameter.cc b/mia/core/test_parameter.cc +index ae9b4976..28ef2a80 100644 +--- a/mia/core/test_parameter.cc ++++ b/mia/core/test_parameter.cc +@@ -26,7 +26,7 @@ + + #include <boost/test/test_tools.hpp> + #include <boost/test/unit_test_suite.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core/parameter.hh> + #include <mia/core/msgstream.hh> +diff --git a/mia/core/test_probmap.cc b/mia/core/test_probmap.cc +index 2dc6cb6c..38052681 100644 +--- a/mia/core/test_probmap.cc ++++ b/mia/core/test_probmap.cc +@@ -22,7 +22,7 @@ + + #include <boost/test/unit_test_suite.hpp> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core/cmdlineparser.hh> + #include <mia/core/probmap.hh> +diff --git a/mia/core/test_sqmin.cc b/mia/core/test_sqmin.cc +index f00b3b85..4a0b67b9 100644 +--- a/mia/core/test_sqmin.cc ++++ b/mia/core/test_sqmin.cc +@@ -23,7 +23,7 @@ + #define BOOST_TEST_DYN_LINK + #include <boost/test/unit_test_suite.hpp> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core/sqmin.hh> + +diff --git a/mia/internal/autotest.hh b/mia/internal/autotest.hh +index 419f6e8f..4458c0b2 100644 +--- a/mia/internal/autotest.hh ++++ b/mia/internal/autotest.hh +@@ -34,7 +34,7 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_NO_MAIN + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <miaconfig.h> + #include <mia/core/cmdlineparser.hh> +diff --git a/mia/internal/plugintester.hh b/mia/internal/plugintester.hh +index 2d42b858..e632e5f7 100644 +--- a/mia/internal/plugintester.hh ++++ b/mia/internal/plugintester.hh +@@ -31,7 +31,7 @@ + #define BOOST_TEST_MAIN + #define BOOST_TEST_NO_MAIN + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <miaconfig.h> + #include <mia/core/factory.hh> +diff --git a/mia/test/testhelpers.hh b/mia/test/testhelpers.hh +index 27f37e7f..68c213a6 100644 +--- a/mia/test/testhelpers.hh ++++ b/mia/test/testhelpers.hh +@@ -23,7 +23,7 @@ + + #include <type_traits> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + namespace miatest + { +diff --git a/src/2dlerp.cc b/src/2dlerp.cc +index 4c7dde77..1e8801de 100644 +--- a/src/2dlerp.cc ++++ b/src/2dlerp.cc +@@ -25,7 +25,7 @@ + + #include <boost/test/unit_test_suite.hpp> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core.hh> + #include <mia/internal/main.hh> +diff --git a/src/3dlerp.cc b/src/3dlerp.cc +index 6ee8dca0..2f1c1f3a 100644 +--- a/src/3dlerp.cc ++++ b/src/3dlerp.cc +@@ -24,7 +24,7 @@ + #define BOOST_TEST_NO_MAIN + #include <boost/test/unit_test_suite.hpp> + #include <boost/test/unit_test.hpp> +-#include <boost/test/floating_point_comparison.hpp> ++#include <boost/test/tools/floating_point_comparison.hpp> + + #include <mia/core.hh> + #include <mia/internal/main.hh> |