diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 227 |
1 files changed, 166 insertions, 61 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 1b97e21a62..9703301da0 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -67,6 +67,7 @@ ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019, 2020 Tanguy Le Carrour <tanguy@bioneland.org> ;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2020 sirgazil <sirgazil@zoho.com> ;;; Copyright © 2020 Sebastian Schott <sschott@mailbox.org> @@ -681,7 +682,7 @@ Expressions are constructed from parsed strings or directly in Python.") (propagated-inputs `(("numpy" ,python-numpy))) (inputs `(("hdf4" ,hdf4) - ("libjpeg" ,libjpeg) + ("libjpeg" ,libjpeg-turbo) ("zlib" ,zlib))) (arguments `(#:phases @@ -1553,14 +1554,14 @@ from the Python interpreter, or as a small part of a larger application.") (define-public python-six (package (name "python-six") - (version "1.12.0") + (version "1.14.0") (source (origin (method url-fetch) (uri (pypi-uri "six" version)) (sha256 (base32 - "0wxs1q74v07ssjywbbm7x6h5v9qx209ld2yfsif4060sxi0h2sni")))) + "02lw67hprv57hyg3cfy02y3ixjk3nzwc0dx3c4ynlvkfwkfdnsr3")))) (build-system python-build-system) (arguments `(#:phases @@ -1569,8 +1570,7 @@ from the Python interpreter, or as a small part of a larger application.") (lambda _ (invoke "py.test" "-v")))))) (native-inputs - `(("python-py" ,python-py) - ("python-pytest" ,python-pytest-bootstrap))) + `(("python-pytest" ,python-pytest-bootstrap))) (home-page "https://pypi.org/project/six/") (synopsis "Python 2 and 3 compatibility utilities") (description @@ -2166,14 +2166,14 @@ server.") (define-public python-py (package (name "python-py") - (version "1.8.0") + (version "1.8.1") (source (origin (method url-fetch) (uri (pypi-uri "py" version)) (sha256 (base32 - "0lsy1gajva083pzc7csj1cvbmminb7b4l6a0prdzyb3fd829nqyw")))) + "1ajjazg3913n0sp3vjyva9c2qh5anx8ziryng935f89604a0h9sy")))) (build-system python-build-system) (arguments ;; FIXME: "ImportError: 'test' module incorrectly imported from @@ -4337,13 +4337,13 @@ library, libgit2 implements Git plumbing.") (define-public python-pyparsing (package (name "python-pyparsing") - (version "2.3.1") + (version "2.4.6") (source (origin (method url-fetch) (uri (pypi-uri "pyparsing" version)) (sha256 - (base32 "0yk6xl885b91dmlhlsap7x78hk2rdr879fln9anbq6k4ca42djb6")))) + (base32 "17wn5zlijc9m9zj26gy3f541y7smpj8rfhl51d025c2gm210b0sc")))) (build-system python-build-system) (outputs '("out" "doc")) (arguments @@ -5128,7 +5128,7 @@ the OleFileIO module from PIL, the Python Image Library.") (inputs `(("freetype" ,freetype) ("lcms" ,lcms) - ("libjpeg" ,libjpeg) + ("libjpeg" ,libjpeg-turbo) ("libtiff" ,libtiff) ("libwebp" ,libwebp) ("openjpeg" ,openjpeg) @@ -5630,13 +5630,13 @@ child application and control it as if a human were typing commands.") (define-public python-setuptools-scm (package (name "python-setuptools-scm") - (version "3.2.0") + (version "3.4.3") (source (origin (method url-fetch) (uri (pypi-uri "setuptools_scm" version)) (sha256 (base32 - "0n3knn3p1sqlx31k2lahn7z9bacvlv8nhlfidj77vz50bxqlgasj")))) + "083k93wi7mrmp1cn28hcbnr6sivbgls0y7zz2m5qzn1wg04a3f16")))) (build-system python-build-system) (home-page "https://github.com/pypa/setuptools_scm/") (synopsis "Manage Python package versions in SCM metadata") @@ -5646,18 +5646,6 @@ child application and control it as if a human were typing commands.") them as the version argument or in a SCM managed file.") (license license:expat))) -;; Needed by python-lazy-object-proxy, remove on next update cycle. -(define-public python-setuptools-scm-3.3 - (package - (inherit python-setuptools-scm) - (version "3.3.3") - (source (origin - (method url-fetch) - (uri (pypi-uri "setuptools_scm" version)) - (sha256 - (base32 - "19cyndx23xmpbhz4qrwmfwsmnnaczd0dw7qg977ksq2dbvxy29dx")))))) - (define-public python2-setuptools-scm (package-with-python2 python-setuptools-scm)) @@ -5696,9 +5684,17 @@ older Python versions.") "0y3hg12iby1qyaspnbisz4s4vxax7syikk3skznwqizqyv89y9yk")))) (build-system python-build-system) (arguments - `(#:python ,python-2)) - (native-inputs - `(("python-wheel" ,python2-wheel))) + `(#:python ,python-2 + #:phases (modify-phases %standard-phases + ;; The build system tests for python-wheel, but it is + ;; not required for Guix nor the test suite. Just drop + ;; it to make bootstrapping pytest easier. + (add-after 'unpack 'drop-wheel-dependency + (lambda _ + (substitute* "setup.cfg" + (("^[[:blank:]]+wheel") + "")) + #t))))) (propagated-inputs `(("python-pathlib2" ,python2-pathlib2) ("python-typing" ,python2-typing))) @@ -5709,21 +5705,33 @@ older Python versions.") for older versions of Python.") (license license:asl2.0))) +;; For importlib-metadata-bootstrap below. +(define-public python2-importlib-resources-bootstrap + (hidden-package + (package/inherit + python2-importlib-resources + (name "python2-importlib-resources-bootstrap") + (propagated-inputs + `(("python-pathlib2-bootstrap" ,python2-pathlib2-bootstrap) + ("python-typing" ,python2-typing)))))) + (define-public python-importlib-metadata (package (name "python-importlib-metadata") - (version "1.4.0") + (version "1.5.0") (source (origin (method url-fetch) (uri (pypi-uri "importlib_metadata" version)) (sha256 - (base32 "1n76444v7zn910xrhh8954jdn4byxbn9f1jck6b85a716mbh2z7i")))) + (base32 + "00ikdj4gjhankdljnz7g5ggak4k9lql2926x0x117ir9j2lv7x86")))) (build-system python-build-system) (propagated-inputs `(("python-zipp" ,python-zipp))) (native-inputs `(("python-setuptools-scm" ,python-setuptools-scm) + ("python-pyfakefs" ,python-pyfakefs) ("python-packaging" ,python-packaging))) (home-page "https://importlib-metadata.readthedocs.io/") (synopsis "Read metadata from Python packages") @@ -5743,6 +5751,10 @@ need to use the older and less efficient @code{pkg_resources} package.") (package/inherit base (name "python2-importlib-metadata") + (native-inputs + `(("python-setuptools-scm" ,python2-setuptools-scm) + ("python-pyfakefs" ,python2-pyfakefs-bootstrap) + ("python-packaging" ,python2-packaging-bootstrap))) (propagated-inputs `(("python-configparser" ,python2-configparser) ("python-contextlib2" ,python2-contextlib2) @@ -5750,6 +5762,22 @@ need to use the older and less efficient @code{pkg_resources} package.") ("python-pathlib2" ,python2-pathlib2) ,@(package-propagated-inputs base)))))) +;; This package is used by python2-pytest, and thus must not depend on it. +(define-public python2-importlib-metadata-bootstrap + (hidden-package + (package/inherit + python2-importlib-metadata + (name "python2-importlib-metadata-bootstrap") + (arguments + `(#:tests? #f + ,@(package-arguments python2-importlib-metadata))) + (propagated-inputs + `(("python-zipp" ,python2-zipp-bootstrap) + ("python-pathlib2" ,python2-pathlib2-bootstrap) + ("python-configparser" ,python2-configparser) + ("python-contextlib2" ,python2-contextlib2-bootstrap) + ("python-importlib-resources" ,python2-importlib-resources-bootstrap)))))) + (define-public python-jaraco-packaging (package (name "python-jaraco-packaging") @@ -7369,13 +7397,13 @@ complexity of Python source code.") (define-public python-flake8 (package (name "python-flake8") - (version "3.7.7") + (version "3.7.9") (source (origin (method url-fetch) (uri (pypi-uri "flake8" version)) (sha256 (base32 - "0qg6zggqigrd4k3gv88shd1a27d0cwgfql8vfiq2c7rl7w3rd6c5")))) + "1yscj6avirm6m12bjh4fn2lfgxaamqsjh9pirdqfi0fcgq8ils25")))) (build-system python-build-system) (arguments `(#:phases @@ -7393,8 +7421,7 @@ complexity of Python source code.") ("python-mccabe" ,python-mccabe))) (native-inputs `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest-bootstrap) - ("python-pytest-runner" ,python-pytest-runner))) + ("python-pytest" ,python-pytest-bootstrap))) (home-page "https://gitlab.com/pycqa/flake8") (synopsis "The modular source code checker: pep8, pyflakes and co") @@ -7661,13 +7688,13 @@ add functionality and customization to your projects with their own plugins.") (define-public python-fonttools (package (name "python-fonttools") - (version "3.38.0") + (version "4.6.0") (source (origin (method url-fetch) (uri (pypi-uri "fonttools" version ".zip")) (sha256 (base32 - "12ripk3s7skgxr1bs9r8n13r94ym3s8iir7ivfixls9fa4dabmlh")))) + "1mq9kdzhcsp96bhv7smnrpdg1s4z5wh70bsl99c0jmcrahqdisqq")))) (build-system python-build-system) (native-inputs `(("unzip" ,unzip) @@ -7683,8 +7710,18 @@ also contains a tool called “TTX” which converts TrueType/OpenType fonts to from an XML-based format.") (license license:expat))) +;; Fonttools 4.x dropped support for Python 2, so stick with 3.x here. (define-public python2-fonttools - (package-with-python2 python-fonttools)) + (let ((base (package-with-python2 (strip-python2-variant python-fonttools)))) + (package/inherit + base + (version "3.44.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "fonttools" version ".zip")) + (sha256 + (base32 + "0v6399g755f2hn1ry62i5b6gdinf2fpx2966v3bxh6bjw1accb5p"))))))) (define-public python-ly (package @@ -9208,6 +9245,18 @@ the standard library.") (native-inputs `(("python2-unittest2" ,python2-unittest2)))))) +;; This package is used by python2-pytest via python2-importlib-metadata, +;; and thus can not depend on python-unittest2 (which depends on pytest). +(define-public python2-contextlib2-bootstrap + (hidden-package + (package/inherit + python2-contextlib2 + (name "python2-contextlib2-bootstrap") + (arguments + `(#:tests? #f + ,@(package-arguments python2-contextlib2))) + (native-inputs '())))) + (define-public python-texttable (package (name "python-texttable") @@ -9686,14 +9735,14 @@ library as well as on the command line.") (define-public python-pluggy (package (name "python-pluggy") - (version "0.11.0") + (version "0.13.1") (source (origin (method url-fetch) (uri (pypi-uri "pluggy" version)) (sha256 (base32 - "10511a54dvafw1jrk75mrhml53c7b7w4yaw7241696lc2hfvr895")))) + "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm")))) (build-system python-build-system) (native-inputs `(("python-setuptools-scm" ,python-setuptools-scm))) @@ -9701,10 +9750,30 @@ library as well as on the command line.") (description "Pluggy is an extraction of the plugin manager as used by Pytest but stripped of Pytest specific details.") (home-page "https://pypi.org/project/pluggy/") + (properties `((python2-variant . ,(delay python2-pluggy)))) (license license:expat))) (define-public python2-pluggy - (package-with-python2 python-pluggy)) + (let ((base (package-with-python2 (strip-python2-variant + python-pluggy)))) + (package/inherit + base + (propagated-inputs + `(("python-importlib-metadata" ,python2-importlib-metadata)))))) + +;; This package requires python2-importlib-metadata, but that package +;; ends up needing python2-pluggy via python2-pytest, so we need this +;; variant to solve the circular dependency. +(define-public python2-pluggy-bootstrap + (hidden-package + (package/inherit + python2-pluggy + (name "python2-pluggy-bootstrap") + (arguments + `(#:tests? #f + ,@(package-arguments python2-pluggy))) + (propagated-inputs + `(("python-importlib-metadata" ,python2-importlib-metadata-bootstrap)))))) (define-public python-tox (package @@ -9858,13 +9927,16 @@ python-xdo for newer bindings.)") (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ - (invoke "pytest" "-vv")))))) + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (invoke "nosetests" "-v") + (format #t "test suite not run~%")) + #t))))) (propagated-inputs `(("python-markupsafe" ,python-markupsafe))) (native-inputs `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest))) + ("python-nose" ,python-nose))) (home-page "https://www.makotemplates.org/") (synopsis "Templating language for Python") (description "Mako is a templating language for Python that compiles @@ -10389,13 +10461,13 @@ anymore.") (define-public python2-pathlib2 (package (name "python2-pathlib2") - (version "2.3.3") + (version "2.3.5") (source (origin (method url-fetch) (uri (pypi-uri "pathlib2" version)) (sha256 (base32 - "0hpp92vqqgcd8h92msm9slv161b1q160igjwnkf2ag6cx0c96695")))) + "0s4qa8c082fdkb17izh4mfgwrjd1n5pya18wvrbwqdvvb5xs9nbc")))) (build-system python-build-system) ;; We only need the the Python 2 variant, since for Python 3 our minimum ;; version is 3.4 which already includes this package as part of the @@ -11650,7 +11722,7 @@ it will manage (install/update) them for you.") (base32 "1w1aaay424ciz8fz3fkzxb0pxzfxn184f2whpyn4fx72bn50x47k")))) (native-inputs - `(("python-setuptools-scm" ,python-setuptools-scm-3.3))) + `(("python-setuptools-scm" ,python-setuptools-scm))) (build-system python-build-system) (home-page "https://github.com/ionelmc/python-lazy-object-proxy") (synopsis "Lazy object proxy for python") @@ -13410,13 +13482,13 @@ and bit flag values.") (define-public python-attrs (package (name "python-attrs") - (version "19.1.0") + (version "19.3.0") (source (origin (method url-fetch) (uri (pypi-uri "attrs" version)) (sha256 (base32 - "16g33zr5f449lqc5wgvzpknxryfzrfsxcr6kpgxwn7l5fkv71f7h")))) + "0wky4h28n7xnr6xv69p9z6kv8bzn50d10c3drmd9ds8gawbcxdzp")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -13758,14 +13830,16 @@ of @code{functools.lru_cache} from python 3.3.") (define-public python-configparser (package (name "python-configparser") - (version "3.7.1") + (version "4.0.2") (source (origin (method url-fetch) (uri (pypi-uri "configparser" version)) (sha256 (base32 - "0cnz213il9lhgda6x70fw7mfqr8da43s3wm343lwzhqx94mgmmav")))) + "1priacxym85yjcf68hh38w55nqswaxp71ryjyfdk222kg9l85ln7")))) + (native-inputs + `(("python-setuptools_scm" ,python-setuptools-scm))) (build-system python-build-system) (home-page "https://github.com/jaraco/configparser/") (synopsis "Backport of configparser from python 3.5") @@ -13990,13 +14064,13 @@ It supports both normal and Unicode strings.") (define-public python-scandir (package (name "python-scandir") - (version "1.9.0") + (version "1.10.0") (source (origin (method url-fetch) (uri (pypi-uri "scandir" version)) (sha256 - (base32 "0r3hvf1a9jm1rkqgx40gxkmccknkaiqjavs8lccgq9s8khh5x5s4")))) + (base32 "1bkqwmf056pkchf05ywbnf659wqlp6lljcdb0y88wr9f0vv32ijd")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -14131,7 +14205,11 @@ several utilities, as well as an API for building localization tools.") (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ (invoke "py.test" "-vv")))))) + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (invoke "py.test" "-vv") + (format #t "test suite not run~%")) + #t))))) (native-inputs `(("python-pretend" ,python-pretend) ("python-pytest" ,python-pytest))) @@ -14152,6 +14230,29 @@ information.") (define-public python2-packaging (package-with-python2 python-packaging)) +;; Variants with minimal dependencies, for bootstrapping Pytest. +(define-public python-packaging-bootstrap + (hidden-package + (package/inherit + python-packaging + (name "python-packaging-bootstrap") + (native-inputs '()) + (propagated-inputs + `(("python-pyparsing" ,python-pyparsing))) + (arguments '(#:tests? #f))))) + +(define-public python2-packaging-bootstrap + (hidden-package + (package/inherit + python2-packaging + (name "python2-packaging-bootstrap") + (native-inputs '()) + (propagated-inputs + `(("python-pyparsing" ,python2-pyparsing))) + (arguments + `(#:tests? #f + ,@(package-arguments python2-packaging)))))) + (define-public python-relatorio (package (name "python-relatorio") @@ -15914,14 +16015,14 @@ based on the CPython 2.7 and 3.7 parsers.") (define-public python-typing (package (name "python-typing") - (version "3.6.6") + (version "3.7.4.1") (source (origin (method url-fetch) (uri (pypi-uri "typing" version)) (sha256 (base32 - "0ba9acs4awx15bf9v3nrs781msbd2nx826906nj6fqks2bvca9s0")))) + "08xs7s5pyq99hbrzw23inczmidz90krvpv9q5p1qrvh6yzrydpwi")))) (build-system python-build-system) (home-page "https://docs.python.org/3/library/typing.html") (synopsis "Type hints for Python") @@ -16142,14 +16243,14 @@ file system events on Linux.") (define-public python-more-itertools (package (name "python-more-itertools") - (version "7.1.0") + (version "8.2.0") (source (origin (method url-fetch) (uri (pypi-uri "more-itertools" version)) (sha256 (base32 - "16phg2f2dvm6ci5wr49ncha5lmc0m2in3bsl33c61vzca4gkvd4b")))) + "01x5nwm1zxmnd06cllbdd095xxc2nd25ing1a726m2kd30rbkpdi")))) (build-system python-build-system) (home-page "https://github.com/erikrose/more-itertools") (synopsis "More routines for operating on iterables, beyond itertools") @@ -16173,7 +16274,7 @@ working with iterables.") (base32 "1r12cm6mcdwdzz7d47a6g4l437xsvapdlgyhqay3i2nrlv03da9q")))) (arguments - `(#:python ,python2-minimal)) + `(#:python ,python-2)) (propagated-inputs `(("python2-six" ,python2-six-bootstrap))))) @@ -17095,14 +17196,15 @@ that is accessible to other projects developed in Cython.") (base32 "0fm0w5id2yhqld95hg2m636vjgkz377rvgdfqaxc25vbylr9lklp")))) (build-system python-build-system) - (native-inputs - `(("python-tox" ,python-tox))) + (arguments + ;; FIXME: Tests require many extra dependencies, and would introduce + ;; a circular dependency on hypothesis, which uses this package. + '(#:tests? #f)) (propagated-inputs `(("python-appdirs" ,python-appdirs) ("python-distlib" ,python-distlib) ("python-filelock" ,python-filelock) - ("python-importlib-metadata" ,python-importlib-metadata) ;; python < 3.8 - ("python-six" ,python-six))) + ("python-six" ,python-six-bootstrap))) (home-page "http://www.grantjenks.com/docs/sortedcontainers/") (synopsis "Sorted List, Sorted Dict, Sorted Set") (description @@ -17110,6 +17212,9 @@ that is accessible to other projects developed in Cython.") pure-Python.") (license license:asl2.0))) +(define-public python2-sortedcontainers + (package-with-python2 python-sortedcontainers)) + (define-public python-cloudpickle (package (name "python-cloudpickle") |