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diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm new file mode 100644 index 0000000000..770f5abc63 --- /dev/null +++ b/gnu/packages/python-xyz.scm @@ -0,0 +1,14840 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr> +;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org> +;;; Copyright © 2014, 2017 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch> +;;; Copyright © 2015 Omar Radwan <toxemicsquire4@gmail.com> +;;; Copyright © 2015 Pierre-Antoine Rault <par@rigelk.eu> +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016 Christopher Allan Webber <cwebber@dustycloud.org> +;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr> +;;; Copyright © 2015, 2016 David Thompson <davet@gnu.org> +;;; Copyright © 2015, 2016, 2017 Leo Famulari <leo@famulari.name> +;;; Copyright © 2015, 2017 Ben Woodcroft <donttrustben@gmail.com> +;;; Copyright © 2015, 2016 Erik Edrosa <erik.edrosa@gmail.com> +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2017 Kyle Meyer <kyle@kyleam.com> +;;; Copyright © 2015, 2016 Chris Marusich <cmmarusich@gmail.com> +;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org> +;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org> +;;; Copyright © 2016, 2018 Hartmut Goebel <h.goebel@crazy-compilers.com> +;;; Copyright © 2016 Daniel Pimentel <d4n1@d4n1.org> +;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com> +;;; Copyright © 2016, 2017 Troy Sankey <sankeytms@gmail.com> +;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is> +;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org> +;;; Copyright © 2016 David Craven <david@craven.ch> +;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2016, 2017 Stefan Reichör <stefan@xsteve.at> +;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org> +;;; Copyright © 2016, 2017 Alex Vong <alexvong1995@gmail.com> +;;; Copyright © 2016, 2017, 2018 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2016, 2017, 2018 Julien Lepiller <julien@lepiller.eu> +;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> +;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au> +;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> +;;; Copyright © 2017, 2018 Adriano Peluso <catonano@gmail.com> +;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au> +;;; Copyright © 2017, 2018 Mathieu Othacehe <m.othacehe@gmail.com> +;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> +;;; Copyright © 2017 Roel Janssen <roel@gnu.org> +;;; Copyright © 2017, 2018 Kei Kebreau <kkebreau@posteo.net> +;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> +;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com> +;;; Copyright © 2017 Brendan Tildesley <brendan.tildesley@openmailbox.org> +;;; Copyright © 2018 Ethan R. Jones <ethanrjones97@gmail.com +;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com> +;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com> +;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org> +;;; Copyright © 2018 Adam Massmann <massmannak@gmail.com> +;;; Copyright © 2016, 2018 Tomáš Čech <sleep_walker@gnu.org> +;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> +;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org> +;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com> +;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages python-xyz) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (gnu packages) + #:use-module (gnu packages algebra) + #:use-module (gnu packages adns) + #:use-module (gnu packages attr) + #:use-module (gnu packages backup) + #:use-module (gnu packages bash) + #:use-module (gnu packages check) + #:use-module (gnu packages compression) + #:use-module (gnu packages crypto) + #:use-module (gnu packages databases) + #:use-module (gnu packages file) + #:use-module (gnu packages fontutils) + #:use-module (gnu packages gcc) + #:use-module (gnu packages geo) + #:use-module (gnu packages ghostscript) + #:use-module (gnu packages gl) + #:use-module (gnu packages glib) + #:use-module (gnu packages graphviz) + #:use-module (gnu packages graphics) + #:use-module (gnu packages gstreamer) + #:use-module (gnu packages gtk) + #:use-module (gnu packages icu4c) + #:use-module (gnu packages image) + #:use-module (gnu packages imagemagick) + #:use-module (gnu packages libevent) + #:use-module (gnu packages libffi) + #:use-module (gnu packages linux) + #:use-module (gnu packages llvm) + #:use-module (gnu packages man) + #:use-module (gnu packages maths) + #:use-module (gnu packages multiprecision) + #:use-module (gnu packages networking) + #:use-module (gnu packages ncurses) + #:use-module (gnu packages openstack) + #:use-module (gnu packages pcre) + #:use-module (gnu packages perl) + #:use-module (gnu packages pkg-config) + #:use-module (gnu packages python) + #:use-module (gnu packages python-crypto) + #:use-module (gnu packages python-web) + #:use-module (gnu packages qt) + #:use-module (gnu packages readline) + #:use-module (gnu packages sdl) + #:use-module (gnu packages search) + #:use-module (gnu packages shells) + #:use-module (gnu packages ssh) + #:use-module (gnu packages terminals) + #:use-module (gnu packages tex) + #:use-module (gnu packages texinfo) + #:use-module (gnu packages time) + #:use-module (gnu packages tls) + #:use-module (gnu packages version-control) + #:use-module (gnu packages video) + #:use-module (gnu packages web) + #:use-module (gnu packages base) + #:use-module (gnu packages xml) + #:use-module (gnu packages xorg) + #:use-module (gnu packages xdisorg) + #:use-module (gnu packages tcl) + #:use-module (gnu packages bdw-gc) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix utils) + #:use-module (guix build-system gnu) + #:use-module (guix build-system cmake) + #:use-module (guix build-system python) + #:use-module (guix build-system trivial) + #:use-module (srfi srfi-1) + #:use-module (srfi srfi-26)) + +(define-public python-psutil + (package + (name "python-psutil") + (version "5.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "psutil" version)) + (sha256 + (base32 + "063v69x7spyclyaxrd3gmzj3p16q5ayg97xqhwb1kyn22a9pwip2")))) + (build-system python-build-system) + (arguments + ;; FIXME: some tests does not return and times out. + '(#:tests? #f)) + (home-page "https://www.github.com/giampaolo/psutil") + (synopsis "Library for retrieving information on running processes") + (description + "psutil (Python system and process utilities) is a library for retrieving +information on running processes and system utilization (CPU, memory, disks, +network) in Python. It is useful mainly for system monitoring, profiling and +limiting process resources and management of running processes. It implements +many functionalities offered by command line tools such as: ps, top, lsof, +netstat, ifconfig, who, df, kill, free, nice, ionice, iostat, iotop, uptime, +pidof, tty, taskset, pmap.") + (properties `((python2-variant . ,(delay python2-psutil)))) + (license license:bsd-3))) + +(define-public python2-psutil + (let ((base (package-with-python2 (strip-python2-variant python-psutil)))) + (package + (inherit base) + (propagated-inputs + `(("python2-enum34" ,python2-enum34) ;optional + ,@(package-propagated-inputs base)))))) + +(define-public python-shapely + (package + (name "python-shapely") + (version "1.6.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Shapely" version)) + (sha256 + (base32 + "0svc58dzcw9gj92b4sgq35sdxkf85z0qwlzxarkzq4bp3h8jy58l")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython) + ("python-matplotlib" ,python-matplotlib) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (inputs + `(("geos" ,geos))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-geos-path + (lambda* (#:key inputs #:allow-other-keys) + (let ((geos (assoc-ref inputs "geos")) + (glibc (assoc-ref inputs ,(if (%current-target-system) + "cross-libc" "libc")))) + (substitute* "shapely/geos.py" + (("_lgeos = load_dll\\('geos_c', fallbacks=.*\\)") + (string-append "_lgeos = load_dll('geos_c', fallbacks=['" + geos "/lib/libgeos_c.so'])")) + (("free = load_dll\\('c'\\)\\.free") + (string-append "free = load_dll('c', fallbacks=['" + glibc "/lib/libc.so.6']).free")))) + #t))))) + (home-page "https://github.com/Toblerity/Shapely") + (synopsis "Library for the manipulation and analysis of geometric objects") + (description "Shapely is a Python package for manipulation and analysis of +planar geometric objects. It is based on the @code{GEOS} library.") + (license license:bsd-3))) + +(define-public python-logwrap + (package + (name "python-logwrap") + (version "3.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "logwrap" version ".zip")) + (sha256 + (base32 + "1d2k0hvpbi51vl410y8fbs5m0nxnlh2k7gr2nrh3k81ibhzscsra")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six) + ("python-typing" ,python-typing))) + (native-inputs + `(("unzip" ,unzip) + ("python-cython" ,python-cython) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/penguinolog/logwrap") + (synopsis "Decorator for logging function arguments") + (description "This package provides a decorator to log function arguments +and function call return values in a human-readable way.") + (license license:asl2.0))) + +(define-public python2-shapely + (package-with-python2 python-shapely)) + +(define-public python-clyent + (package + (name "python-clyent") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "clyent" version)) + (sha256 + (base32 + "1r9987qmy1pz3hq54160bapqsywpq14waw4w9x3ly8hmq7kpgfbj")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock))) + (home-page "https://github.com/binstar/clyent") + (synopsis "Command line client library") + (description "Clyent is a Python command line utiliy library. It is used +by @code{binstar}, @code{binstar-build} and @code{chalmers}.") + (license license:bsd-3))) + +(define-public python2-clyent + (package-with-python2 python-clyent)) + +(define-public python-babel + (package + (name "python-babel") + (version "2.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Babel" version)) + (sha256 + (base32 + "08rxmbx2s4irp0w0gmn498vns5xy0fagm0fg33xa772jiks51flc")))) + (build-system python-build-system) + (native-inputs + `(("python-freezegun" ,python-freezegun) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-pytz" ,python-pytz))) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "pytest" "-vv")))))) + (home-page "http://babel.pocoo.org/") + (synopsis + "Tools for internationalizing Python applications") + (description + "Babel is composed of two major parts: +- tools to build and work with gettext message catalogs +- a Python interface to the CLDR (Common Locale Data Repository), providing +access to various locale display names, localized number and date formatting, +etc. ") + (license license:bsd-3))) + +(define-public python2-babel + (package-with-python2 python-babel)) + +(define-public python2-backport-ssl-match-hostname + (package + (name "python2-backport-ssl-match-hostname") + (version "3.5.0.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/b/" + "backports.ssl_match_hostname/backports.ssl_match_hostname-" + version ".tar.gz")) + (sha256 + (base32 + "1wndipik52cyqy0677zdgp90i435pmvwd89cz98lm7ri0y3xjajh")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:tests? #f)) ; no test target + (home-page "https://bitbucket.org/brandon/backports.ssl_match_hostname") + (synopsis "Backport of ssl.match_hostname() function from Python 3.5") + (description + "This backport brings the ssl.match_hostname() function to users of +earlier versions of Python. The function checks the hostname in the +certificate returned by the server to which a connection has been established, +and verifies that it matches the intended target hostname.") + (license license:psfl))) + +(define-public python-hdf4 + (package + (name "python-hdf4") + (version "0.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri name version)) + (sha256 + (base32 + "1hjiyrxvxk9817qyqky3nar4y3fs4z8wxz0n884zzb5wi6skrjks")))) + (build-system python-build-system) + (native-inputs `(("nose" ,python-nose))) + (propagated-inputs `(("numpy" ,python-numpy))) + (inputs + `(("hdf4" ,hdf4) + ("libjpeg" ,libjpeg) + ("zlib" ,zlib))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; The 'runexamples' script sets PYTHONPATH to CWD, then goes + ;; on to import numpy. Somehow this works on their CI system. + ;; Let's just manage PYTHONPATH here instead. + (substitute* "runexamples.sh" + (("export PYTHONPATH=.*") "")) + (setenv "PYTHONPATH" + (string-append (getcwd) ":" + (getenv "PYTHONPATH"))) + (invoke "./runexamples.sh") + (invoke "nosetests" "-v")))))) + (home-page "https://github.com/fhs/python-hdf4") + (synopsis "Python interface to the NCSA HDF4 library") + (description + "Python-HDF4 is a python wrapper around the NCSA HDF version 4 library, +which implements the SD (Scientific Dataset), VS (Vdata) and V (Vgroup) API’s. +NetCDF files can also be read and modified. Python-HDF4 is a fork of +@url{http://hdfeos.org/software/pyhdf.php,pyhdf}.") + (license license:expat))) + +(define-public python2-hdf4 + (package-with-python2 python-hdf4)) + +(define-public python-h5py + (package + (name "python-h5py") + (version "2.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "h5py" version)) + (sha256 + (base32 + "0mdr6wrq02ac93m1aqx9kad0ppfzmm4imlxqgyy1x4l7hmdcc9p6")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; no test target + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-hdf5-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((prefix (assoc-ref inputs "hdf5"))) + (substitute* "setup_build.py" + (("\\['/opt/local/lib', '/usr/local/lib'\\]") + (string-append "['" prefix "/lib" "']")) + (("'/opt/local/include', '/usr/local/include'") + (string-append "'" prefix "/include" "'"))) + (substitute* "setup_configure.py" + (("\\['/usr/local/lib', '/opt/local/lib'\\]") + (string-append "['" prefix "/lib" "']"))) + #t)))))) + (propagated-inputs + `(("python-six" ,python-six) + ("python-numpy" ,python-numpy))) + (inputs + `(("hdf5" ,hdf5))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pkgconfig" ,python-pkgconfig))) + (home-page "http://www.h5py.org/") + (synopsis "Read and write HDF5 files from Python") + (description + "The h5py package provides both a high- and low-level interface to the +HDF5 library from Python. The low-level interface is intended to be a +complete wrapping of the HDF5 API, while the high-level component supports +access to HDF5 files, datasets and groups using established Python and NumPy +concepts.") + (license license:bsd-3))) + +(define-public python2-h5py + (package-with-python2 python-h5py)) + +(define-public python-netcdf4 + (package + (name "python-netcdf4") + (version "1.2.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "netCDF4" version)) + (sha256 + (base32 + "1h6jq338amlbk0ilzvjyl7cck80i0bah9a5spn9in71vy2qxm7i5")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (inputs + `(("netcdf" ,netcdf) + ("hdf4" ,hdf4) + ("hdf5" ,hdf5))) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (setenv "NO_NET" "1") ; disable opendap tests + (with-directory-excursion "test" + (setenv "PYTHONPATH" ; find and add the library we just built + (string-append + (car (find-files "../build" "lib.*" + #:directories? #:t + #:fail-on-error? #:t)) + ":" (getenv "PYTHONPATH"))) + (zero? (system* "python" "run_all.py")))))))) + (home-page + "https://github.com/Unidata/netcdf4-python") + (synopsis "Python/numpy interface to the netCDF library") + (description "Netcdf4-python is a Python interface to the netCDF C +library. netCDF version 4 has many features not found in earlier +versions of the library and is implemented on top of HDF5. This module +can read and write files in both the new netCDF 4 and the old netCDF 3 +format, and can create files that are readable by HDF5 clients. The +API is modelled after @code{Scientific.IO.NetCDF}, and should be familiar +to users of that module.") + ;; The software is mainly ISC, but includes some files covered + ;; by the Expat license. + (license (list license:isc license:expat)))) + +(define-public python2-netcdf4 + (package-with-python2 python-netcdf4)) + +(define-public python-lockfile + (package + (name "python-lockfile") + (version "0.12.2") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/l/lockfile/" + "lockfile-" version ".tar.gz")) + (sha256 + (base32 + "16gpx5hm73ah5n1079ng0vy381hl802v606npkx4x8nb0gg05vba")))) + (build-system python-build-system) + (arguments '(#:test-target "check")) + (native-inputs + `(("python-pbr" ,python-pbr))) + (home-page "https://launchpad.net/pylockfile") + (synopsis "Platform-independent file locking module") + (description + "The lockfile package exports a LockFile class which provides a simple +API for locking files.") + (license license:expat))) + +(define-public python2-lockfile + (package-with-python2 python-lockfile)) + +(define-public python-semantic-version + (package + (name "python-semantic-version") + (version "2.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "semantic_version" version)) + (sha256 + (base32 + "1h2l9xyg1zzsda6kjcmfcgycbvrafwci283vcr1v5sbk01l2hhra")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; PyPI tarball lacks tests + (home-page "https://github.com/rbarrois/python-semanticversion") + (synopsis "Semantic versioning module for Python") + (description + "The @code{semantic_version} class is a small library for handling +@uref{https://semver.org/, semantic versioning} (@dfn{SemVer}) in Python. + +It can compare versions, generate a new version that represents a bump in one of +the version levels, and check whether any given string is a proper semantic +version identifier.") + (license license:bsd-3))) + +(define-public python2-semantic-version + (package-with-python2 python-semantic-version)) + +(define-public python-serpent + (package + (name "python-serpent") + (version "1.27") + (source + (origin + (method url-fetch) + (uri (pypi-uri "serpent" version)) + (sha256 + (base32 + "04p9dsrm5pv8vhk3flvih55kgvlzpi38hlaykdiakddmgwqw93bg")))) + (build-system python-build-system) + (home-page "https://github.com/irmen/Serpent") + (synopsis "Serializer for literal Python expressions") + (description + "Serpent provides ast.literal_eval() compatible object tree +serialization. It serializes an object tree into bytes (utf-8 encoded string) +that can be decoded and then passed as-is to ast.literal_eval() to rebuild it +as the original object tree. As such it is safe to send serpent data to other +machines over the network for instance (because only safe literals are +encoded).") + (license license:expat))) + +(define-public python-setuptools + (package + (name "python-setuptools") + (version "40.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "setuptools" version ".zip")) + (sha256 + (base32 + "0pq116lr14gnc62v76nk0npkm6krb2mpp7p9ab369zgv4n7dnah1")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove included binaries which are used to build self-extracting + ;; installers for Windows. + ;; TODO: Find some way to build them ourself so we can include them. + (for-each delete-file (find-files "setuptools" "^(cli|gui).*\\.exe$")) + #t)))) + (build-system python-build-system) + ;; FIXME: Tests require pytest, which itself relies on setuptools. + ;; One could bootstrap with an internal untested setuptools. + (arguments + `(#:tests? #f)) + (home-page "https://pypi.python.org/pypi/setuptools") + (synopsis + "Library designed to facilitate packaging Python projects") + (description + "Setuptools is a fully-featured, stable library designed to facilitate +packaging Python projects, where packaging includes: +Python package and module definitions, +distribution package metadata, +test hooks, +project installation, +platform-specific details, +Python 3 support.") + ;; TODO: setuptools now bundles the following libraries: + ;; packaging, pyparsing, six and appdirs. How to unbundle? + (license (list license:psfl ; setuptools itself + license:expat ; six, appdirs, pyparsing + license:asl2.0 ; packaging is dual ASL2/BSD-2 + license:bsd-2)))) + +(define-public python2-setuptools + (package-with-python2 python-setuptools)) + +(define-public python-uniseg + (package + (name "python-uniseg") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "uniseg" version ".zip")) + (sha256 + (base32 + "05jsazvz6nbmh6l3v1rph5ydkqn1hzx1pyggdyvgp2qgmgrnmiz2")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; The test suite requires network access. + (native-inputs + `(("unzip" ,unzip))) + (home-page + "https://bitbucket.org/emptypage/uniseg-python") + (synopsis + "Python library to determine Unicode text segmentations") + (description + "Uniseg is a Python package used to determine Unicode text segmentations. +Supported segmentations include: +@enumerate +@item @dfn{Code point} (any value in the Unicode codespace) +@item @dfn{Grapheme cluster} (user-perceived character made of a single or +multiple Unicode code points, e.g. \"G\" + acute-accent) +@item Word break +@item Sentence break +@item Line break +@end enumerate") + (license license:expat))) + +(define-public python2-uniseg + (package-with-python2 python-uniseg)) + +(define-public python-humanfriendly + (package + (name "python-humanfriendly") + (version "4.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "humanfriendly" version)) + (sha256 + (base32 + "0pisgizjql86785jchfjv217g0lsgk114g2lja5j4y3lsc3b9szi")))) + (build-system python-build-system) + (arguments + `(;; XXX: Tests depend on coloredlogs, which in turn depends on humanfriendly. + #:tests? #f)) + (propagated-inputs + `(("python-monotonic" ,python-monotonic))) + (home-page "https://humanfriendly.readthedocs.io") + (synopsis "Human-friendly input and output in Python") + (description + "The functions and classes in @code{humanfriendly} can be used to make +text interfaces more user-friendly. It includes tools to parse and format +numbers, file sizes, and timespans, timers for long-running operations, menus +to allow the user to choose from a list of options, and terminal interaction +helpers.") + (license license:expat))) + +(define-public python2-humanfriendly + (package-with-python2 python-humanfriendly)) + +(define-public python-capturer + (package + (name "python-capturer") + (version "2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "capturer" version)) + (sha256 + (base32 + "05d6ji4j8ipiq0br7bwam38qc6hd9l1djmfxlzrxx19ziyjl4089")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) + (propagated-inputs + `(("python-humanfriendly" ,python-humanfriendly))) + (home-page "https://capturer.readthedocs.io") + (synopsis "Capture stdout and stderr streams of the current process") + (description + "The capturer package makes it easy to capture the stdout and stderr +streams of the current process and subprocesses. Output can be relayed +to the terminal in real time but is also available to the Python program +for additional processing.") + (license license:expat))) + +(define-public python2-capturer + (package-with-python2 python-capturer)) + +(define-public python-case + (package + (name "python-case") + (version "1.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "case" version)) + (sha256 + (base32 + "1cagg06vfph864s6l5jb0zqliwxh647bki8j6lf4a4qrv40jnhs8")))) + (build-system python-build-system) + (propagated-inputs + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose) + ("python-six" ,python-six) + ("python-unittest2" ,python-unittest2))) + (native-inputs + `(("python-coverage" ,python-coverage))) + (home-page "https://github.com/celery/case") + (synopsis "Unittest utilities and convenience methods") + (description + "The @code{case} package provides utilities on top of unittest, including +some helpful Python 2 compatibility convenience methods.") + (license license:bsd-3))) + +(define-public python-verboselogs + (package + (name "python-verboselogs") + (version "1.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "verboselogs" version)) + (sha256 + (base32 + "09z4d1jiasn7k1hs5af2ckmnrd0i1d1m04bhfjhv7z6svzfdwgg3")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-astroid" ,python-astroid) + ("python-pylint" ,python-pylint))) + (home-page "https://verboselogs.readthedocs.io") + (synopsis "Verbose logging level for Python's logging module") + (description + "The @code{verboselogs} package extends Python's @code{logging} module to +add the log levels NOTICE, SPAM, SUCCESS and VERBOSE.") + (license license:expat))) + +(define-public python2-verboselogs + (package-with-python2 python-verboselogs)) + +(define-public python-coloredlogs + (package + (name "python-coloredlogs") + (version "7.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "coloredlogs" version)) + (sha256 + (base32 + "1blcann6dyg5dhps9pg12rn0q0rjrlajpmmil0gy0j4cbvnl2il9")))) + (build-system python-build-system) + (arguments + `(;Tests require some updated modules + #:tests? #f)) + (propagated-inputs + `(("python-capturer" ,python-capturer))) + (home-page "https://coloredlogs.readthedocs.io") + (synopsis "Colored stream handler for Python's logging module") + (description + "The @code{coloredlogs} package enables colored terminal output for +Python's logging module. The @code{ColoredFormatter} class inherits from +@code{logging.Formatter} and uses ANSI escape sequences to render your logging +messages in color.") + (license license:expat))) + +(define-public python2-coloredlogs + (package-with-python2 python-coloredlogs)) + +(define-public python-eventlet + (package + (name "python-eventlet") + (version "0.20.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "eventlet" version)) + (sha256 + (base32 + "0f3q55mq4n021wb7qa53pz3ix6i2py64sap66vsaqm2scjw83m9s")))) + (build-system python-build-system) + (propagated-inputs + `(("python-greenlet" ,python-greenlet))) + (arguments + ;; TODO: Requires unpackaged 'enum-compat'. + '(#:tests? #f)) + (home-page "http://eventlet.net") + (synopsis "Concurrent networking library for Python") + (description + "Eventlet is a concurrent networking library for Python that +allows you to change how you run your code, not how you write it. +It uses @code{epoll} or @code{libevent} for highly scalable non-blocking I/O. +Coroutines ensure that the developer uses a blocking style of programming +that is similar to threading, but provide the benefits of non-blocking I/O. +The event dispatch is implicit, which means you can easily use @code{Eventlet} +from the Python interpreter, or as a small part of a larger application.") + (license license:expat))) + +(define-public python2-eventlet + (let ((base (package-with-python2 + (strip-python2-variant python-eventlet)))) + (package (inherit base) + (propagated-inputs + `(("python2-enum34" ,python2-enum34) + ,@(package-propagated-inputs base)))))) + +(define-public python-six + (package + (name "python-six") + (version "1.11.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "six" version)) + (sha256 + (base32 + "1scqzwc51c875z23phj48gircqjgnn3af8zy2izjwmnlxrxsgs3h")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "py.test" "-v")))))) + (native-inputs + `(("python-py" ,python-py) + ("python-pytest" ,python-pytest-bootstrap))) + (home-page "https://pypi.python.org/pypi/six/") + (synopsis "Python 2 and 3 compatibility utilities") + (description + "Six is a Python 2 and 3 compatibility library. It provides utility +functions for smoothing over the differences between the Python versions with +the goal of writing Python code that is compatible on both Python versions. +Six supports every Python version since 2.5. It is contained in only one +Python file, so it can be easily copied into your project.") + (license license:x11))) + +(define-public python2-six + (package-with-python2 python-six)) + +(define-public python-six-bootstrap + (package + (inherit python-six) + (name "python-six-bootstrap") + (native-inputs `()) + (arguments `(#:tests? #f)))) + +(define-public python2-six-bootstrap + (package-with-python2 python-six-bootstrap)) + +(define-public python-schedule + (package + (name "python-schedule") + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "schedule" version)) + (sha256 + (base32 + "0vplyjcbfrq50sphlwya749z8p2pcyi2nycw3518i0qpd9a6189i")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-mock" ,python-mock))) + (home-page "https://github.com/dbader/schedule") + (synopsis "Schedule periodic function calls in Python") + (description + "Schedule is an in-process scheduler for periodic jobs that uses the +builder pattern for configuration. Schedule lets you run Python functions (or +any other callable) periodically at pre-determined intervals using a simple, +human-friendly syntax.") + (license license:expat))) + +(define-public python2-schedule + (package-with-python2 python-schedule)) + +(define-public python-pandas + (package + (name "python-pandas") + (version "0.23.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pandas" version)) + (sha256 + (base32 "1x54pd7hr3y7qahx6b5bf2wzj54xvl8r3s1h4pl254pnmi3wl92v")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-26)) + #:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (let ((build-directory + (string-append + (getcwd) "/build/" + (car (scandir "build" + (cut string-prefix? "lib." <>)))))) + ;; Disable the "strict data files" option which causes + ;; the build to error out if required data files are not + ;; available (as is the case with PyPI archives). + (substitute* "setup.cfg" + (("addopts = --strict-data-files") "addopts = ")) + (with-directory-excursion build-directory + ;; Delete tests that require "moto" which is not yet in Guix. + (for-each delete-file + '("pandas/tests/io/conftest.py" + "pandas/tests/io/json/test_compression.py" + "pandas/tests/io/parser/test_network.py" + "pandas/tests/io/test_excel.py" + "pandas/tests/io/test_parquet.py")) + (invoke "pytest" "-vv" "pandas" "--skip-slow" + "--skip-network" "-k" + ;; XXX: Due to the deleted tests above. + "not test_read_s3_jsonl")))))))) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-pytz" ,python-pytz) + ("python-dateutil" ,python-dateutil))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-lxml" ,python-lxml) + ("python-html5lib" ,python-html5lib) + ("python-nose" ,python-nose) + ("python-pytest" ,python-pytest))) + (home-page "https://pandas.pydata.org") + (synopsis "Data structures for data analysis, time series, and statistics") + (description + "Pandas is a Python package providing fast, flexible, and expressive data +structures designed to make working with structured (tabular, +multidimensional, potentially heterogeneous) and time series data both easy +and intuitive. It aims to be the fundamental high-level building block for +doing practical, real world data analysis in Python.") + (license license:bsd-3))) + +(define-public python2-pandas + (package-with-python2 python-pandas)) + +(define-public python2-mechanize + (package + (name "python2-mechanize") + (version "0.2.5") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/m/mechanize/mechanize-" + version ".tar.gz")) + (sha256 + (base32 + "0rj7r166i1dyrq0ihm5rijfmvhs8a04im28lv05c0c3v206v4rrf")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ; apparently incompatible with Python 3 + #:tests? #f)) + ;; test fails with message + ;; AttributeError: 'module' object has no attribute 'test_pullparser' + ;; (python-3.3.2) or + ;; AttributeError: 'module' object has no attribute 'test_urllib2_localnet' + ;; (python-2.7.5). + ;; The source code is from March 2011 and probably not up-to-date + ;; with respect to python unit tests. + (home-page "http://wwwsearch.sourceforge.net/mechanize/") + (synopsis + "Stateful programmatic web browsing in Python") + (description + "Mechanize implements stateful programmatic web browsing in Python, +after Andy Lester’s Perl module WWW::Mechanize.") + (license (license:non-copyleft + "file://COPYING" + "See COPYING in the distribution.")))) + + +(define-public python-simplejson + (package + (name "python-simplejson") + (version "3.14.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "simplejson" version)) + (sha256 + (base32 + "1lkv3xlf7ryzi69zqfdbkvpxdfy1rg1rq2yzcnxgf4km5m6difqy")))) + (build-system python-build-system) + (home-page "http://simplejson.readthedocs.org/en/latest/") + (synopsis + "Json library for Python") + (description + "JSON (JavaScript Object Notation) is a subset of JavaScript +syntax (ECMA-262 3rd edition) used as a lightweight data interchange +format. + +Simplejson exposes an API familiar to users of the standard library marshal +and pickle modules. It is the externally maintained version of the json +library contained in Python 2.6, but maintains compatibility with Python 2.5 +and (currently) has significant performance advantages, even without using +the optional C extension for speedups. Simplejson is also supported on +Python 3.3+.") + (license license:x11))) + +(define-public python2-simplejson + (package-with-python2 python-simplejson)) + + +(define-public python-pyicu + (package + (name "python-pyicu") + (version "2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyICU" version)) + (sha256 + (base32 + "0wq9y5fi1ighgf5aws9nr87vi1w44p7q1k83rx2y3qj5d2xyhspa")))) + (build-system python-build-system) + (inputs + `(("icu4c" ,icu4c))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-six" ,python-six))) + (home-page "https://github.com/ovalhub/pyicu") + (synopsis "Python extension wrapping the ICU C++ API") + (description + "PyICU is a python extension wrapping the ICU C++ API.") + (properties `((python2-variant . ,(delay python2-pyicu)))) + (license license:x11))) + +(define-public python2-pyicu + (let ((base (package-with-python2 + (strip-python2-variant python-pyicu)))) + (package + (inherit base) + (arguments + `(,@(package-arguments base) + #:phases + (modify-phases %standard-phases + (add-before 'check 'delete-failing-test + (λ _ + ;; XXX: This fails due to Unicode issues unique to Python 2, + ;; it seems: <https://github.com/ovalhub/pyicu/issues/61>. + (delete-file "test/test_Script.py") + #t)))))))) + +(define-public python2-dogtail + ;; Python 2 only, as it leads to "TabError: inconsistent use of tabs and + ;; spaces in indentation" with Python 3. + (package + (name "python2-dogtail") + (version "0.9.9") + (source (origin + (method url-fetch) + (uri (pypi-uri "dogtail" version)) + (sha256 + (base32 + "0p5wfssvzr9w0bvhllzbbd8fnp4cca2qxcpcsc33dchrmh5n552x")))) + (build-system python-build-system) + (arguments `(#:python ,python-2 + #:tests? #f)) ; invalid command "test" + ;; Currently no offical homepage. + (home-page "https://pypi.python.org/pypi/dogtail/") + (synopsis "GUI test tool and automation framework written in Python") + (description + "Dogtail is a GUI test tool and automation framework written in Python. +It uses Accessibility (a11y) technologies to communicate with desktop +applications. dogtail scripts are written in Python and executed like any +other Python program.") + (license license:gpl2+))) + +(define-public python-empy + (package + (name "python-empy") + (version "3.3") + (source (origin + (method url-fetch) + (uri (string-append "http://www.alcyone.com/software/empy/empy-" + version ".tar.gz")) + (sha256 + (base32 + "01g8mmkfnvjdmlhsihwyx56lrg7r5m5d2fg6mnxsvy6g0dnl69f6")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;python2 only + (home-page "http://www.alcyone.com/software/empy/") + (synopsis "Templating system for Python") + (description + "EmPy is a system for embedding Python expressions and statements in +template text; it takes an EmPy source file, processes it, and produces +output. This is accomplished via expansions, which are special signals to the +EmPy system and are set off by a special prefix (by default the at sign, @@). +EmPy can expand arbitrary Python expressions and statements in this way, as +well as a variety of special forms. Textual data not explicitly delimited in +this way is sent unaffected to the output, allowing Python to be used in +effect as a markup language. Also supported are callbacks via hooks, +recording and playback via diversions, and dynamic, chainable filters. The +system is highly configurable via command line options and embedded +commands.") + (license license:lgpl2.1+))) + +(define-public python2-empy + (package-with-python2 python-empy)) + +(define-public python2-element-tree + (package + (name "python2-element-tree") + (version "1.2.6") + (source (origin + (method url-fetch) + (uri (string-append + "http://effbot.org/media/downloads/elementtree-" + version "-20050316.tar.gz")) + (sha256 + (base32 + "016bphqnlg0l4vslahhw4r0aanw95bpypy65r1i1acyb2wj5z7dj")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ; seems to be part of Python 3 + #:tests? #f)) ; no 'test' sub-command + (synopsis "Toolkit for XML processing in Python") + (description + "ElementTree is a Python library supporting lightweight XML processing.") + (home-page "http://effbot.org/zone/element-index.htm") + (license (license:x11-style + "http://docs.python.org/2/license.html" + "Like \"CWI LICENSE AGREEMENT FOR PYTHON 0.9.0 THROUGH 1.2\".")))) + +(define-public python2-pybugz + (package + (name "python2-pybugz") + (version "0.6.11") + (source (origin + (method url-fetch) + (uri (string-append + "http://bits.liquidx.net/projects/pybugz/pybugz-" + version ".tar.gz")) + (sha256 + (base32 + "17ni00p08gp5lkxlrrcnvi3x09fmajnlbz4da03qcgl9q21ym4jd")) + (patches (search-patches "pybugz-stty.patch" + "pybugz-encode-error.patch")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ; SyntaxError with Python 3 + #:tests? #f)) ; no 'test' sub-command + (propagated-inputs + `(("element-tree" ,python2-element-tree))) + (synopsis "Python and command-line interface to Bugzilla") + (description + "PyBugz is a Python library and command-line tool to query the Bugzilla +bug tracking system. It is meant as an aid to speed up interaction with the +bug tracker.") + (home-page "http://www.liquidx.net/pybugz/") + (license license:gpl2))) + +(define-public python2-enum + (package + (name "python2-enum") + (version "0.4.6") + (source (origin + (method url-fetch) + (uri (pypi-uri "enum" version)) + (sha256 + (base32 + "13lk3yrwj42vl30kw3c194f739nrfrdg64s6i0v2p636n4k8brsl")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (home-page "http://pypi.python.org/pypi/enum/") + (synopsis "Robust enumerated type support in Python") + (description + "This provides a module for robust enumerations in Python. It has +been superseded by the Python standard library and is provided only for +compatibility.") + ;; Choice of either license. + (license (list license:gpl3+ license:psfl)))) + +(define-public python-enum34 + (package + (name "python-enum34") + (version "1.1.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "enum34" version)) + (sha256 + (base32 + "1cgm5ng2gcfrkrm3hc22brl6chdmv67b9zvva9sfs7gn7dwc9n4a")))) + (build-system python-build-system) + (home-page "https://pypi.python.org/pypi/enum34") + (synopsis "Backported Python 3.4 Enum") + (description + "Enum34 is the new Python stdlib enum module available in Python 3.4 +backported for previous versions of Python from 2.4 to 3.3.") + (license license:bsd-3))) + +(define-public python2-enum34 + (package-with-python2 python-enum34)) + +(define-public python-parse-type + (package + (name "python-parse-type") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "parse_type" version)) + (sha256 + (base32 + "0g3b6gsdwnm8dpkh2vn34q6dzxm9gl908ggyzcv31n9xbp3vv5pm")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six) + ("python-parse" ,python-parse))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/jenisys/parse_type") + (synopsis "Extended parse module") + (description + "Parse_type extends the python parse module.") + (properties + `((python2-variant . ,(delay python2-parse-type)))) + (license license:bsd-3))) + +(define-public python2-parse-type + (let ((base (package-with-python2 + (strip-python2-variant python-parse-type)))) + (package (inherit base) + (propagated-inputs + `(("python2-enum34" ,python2-enum34) + ,@(package-propagated-inputs base)))))) + +(define-public python-parse + (package + (name "python-parse") + (version "1.8.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "parse" version)) + (sha256 + (base32 + "0f8997xr8nq2nq35iiviq8ningd1zvy59fg503xfpbi2dwhgdkf3")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "python" "test_parse.py")))))) + (home-page "https://github.com/r1chardj0n3s/parse") + (synopsis "Parse strings") + (description + "Parse strings using a specification based on the Python @code{format()} +syntax.") + (license license:x11))) + +(define-public python-polib + (package + (name "python-polib") + (version "1.0.8") + (source (origin + (method url-fetch) + (uri (pypi-uri "polib" version)) + (sha256 + (base32 + "1pq2hbm3m2q0cjdszk8mc4qa1vl3wcblh5nfyirlfnzb2pcy7zss")))) + (build-system python-build-system) + (home-page "https://bitbucket.org/izi/polib/wiki/Home") + (synopsis "Manipulate, create and modify gettext files") + (description "Polib can manipulate any gettext format (po, pot and mo) +files. It can be used to create po files from scratch or to modify +existing ones.") + (license license:expat))) + +(define-public python2-polib + (let ((base (package-with-python2 (strip-python2-variant python-polib)))) + (package + (inherit base) + (arguments `(,@(package-arguments base) + ;; Tests don't work with python2. + #:tests? #f))))) + +(define-public scons + (package + (name "scons") + (version "3.0.1") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/scons/scons/" version + "/scons-" version ".tar.gz")) + (sha256 + (base32 + "0wzid419mlwqw9llrg8gsx4nkzhqy16m4m40r0xnh6cwscw5wir4")))) + (build-system python-build-system) + (arguments + `(#:use-setuptools? #f ; still relies on distutils + #:tests? #f)) ; no 'python setup.py test' command + (home-page "http://scons.org/") + (synopsis "Software construction tool written in Python") + (description + "SCons is a software construction tool. Think of SCons as an improved, +cross-platform substitute for the classic Make utility with integrated +functionality similar to autoconf/automake and compiler caches such as ccache. +In short, SCons is an easier, more reliable and faster way to build +software.") + (license license:x11))) + +(define-public scons-python2 + (package + (inherit (package-with-python2 scons)) + (name "scons-python2"))) + +(define-public python-extras + (package + (name "python-extras") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "extras" version)) + (sha256 + (base32 + "0khvm08rcwm62wc47j8niyl6h13f8w51c8669ifivjdr23g3cbhk")))) + (build-system python-build-system) + (arguments + ;; FIXME: Circular dependency on testtools. + '(#:tests? #f)) + (home-page "https://github.com/testing-cabal/extras") + (synopsis "Useful extensions to the Python standard library") + (description + "Extras is a set of extensions to the Python standard library.") + (license license:expat))) + +(define-public python2-extras + (package-with-python2 python-extras)) + +(define-public python-mimeparse + (package + (name "python-mimeparse") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/p/python-mimeparse/python-mimeparse-" + version ".tar.gz")) + (sha256 + (base32 + "0y2g6cl660bpz11srgqyvvm8gmywpgyx8g0xfvbiyr0af0yv1r3n")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "./mimeparse_test.py")))))) + (home-page + "https://github.com/dbtsai/python-mimeparse") + (synopsis "Python library for parsing MIME types") + (description + "Mimeparse provides basic functions for parsing MIME type names and +matching them against a list of media-ranges.") + (license license:expat))) + +(define-public python2-mimeparse + (package-with-python2 python-mimeparse)) + +(define-public python-miniboa + (package + (name "python-miniboa") + (version "1.0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "miniboa" version)) + (sha256 + (base32 + "09jh3pn4rh7kh7jayanf8jzy6gp03791b5a193w6148cf3i6k9m3")))) + (build-system python-build-system) + (home-page "https://github.com/shmup/miniboa") + (synopsis "Simple, single-threaded Telnet server") + (description + "Miniboa is a simple, asynchronous, single-threaded, poll-based Telnet +server.") + (license license:asl2.0))) + +(define-public python2-miniboa + (package-with-python2 python-miniboa)) + +(define-public python-pafy + (package + (name "python-pafy") + (version "0.5.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pafy" version)) + (sha256 + (base32 + "1a7dxi95m1043rxx1r5x3ngb66nwlq6aqcasyqqjzmmmjps4zrim")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; Currently pafy can not find itself in the tests + (propagated-inputs + ;; Youtube-dl is a python package which is imported in the file + ;; "backend_youtube_dl.py", therefore it needs to be propagated. + `(("youtube-dl" ,youtube-dl))) + (home-page "https://np1.github.io/pafy/") + (synopsis "Retrieve YouTube content and metadata") + (description + "@code{pafy} is a python library to retrieve YouTube content and metadata.") + (license license:lgpl3+))) + +(define-public python2-funcsigs + (package + (name "python2-funcsigs") + (version "1.0.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "funcsigs" version)) + (sha256 + (base32 + "0l4g5818ffyfmfs1a924811azhjj8ax9xd1cffr1mzd3ycn0zfx7")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (native-inputs + `(("python2-unittest2" ,python2-unittest2))) + (home-page "http://funcsigs.readthedocs.org") + (synopsis "Python function signatures from PEP362") + (description + "Backport of @code{funcsigs} which was introduced in Python 3.3.") + (license license:asl2.0))) + +(define-public python2-funcsigs-bootstrap + (package + (inherit python2-funcsigs) + (name "python2-funcsigs-bootstrap") + (native-inputs `()) + (arguments + `(#:tests? #f + ,@(package-arguments python2-funcsigs))))) + +(define-public python-py + (package + (name "python-py") + (version "1.5.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "py" version)) + (sha256 + (base32 + "1xxvwfn82457djf55f5n2c94699rfqnk43br8fif2r2q8gvrmm9z")))) + (build-system python-build-system) + (arguments + ;; FIXME: "ImportError: 'test' module incorrectly imported from + ;; '/gnu/store/...-python-pytest-mimimal-3.0.5/lib/python3.5/site-packages'. + ;; Expected '/tmp/guix-build-python-py-1.4.31.drv-0/py-1.4.31/py'. + ;; Is this module globally installed?" + '(#:tests? #f)) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + (home-page "https://github.com/pytest-dev/py") + (synopsis "Python library for parsing, I/O, instrospection, and logging") + (description + "Py is a Python library for file name parsing, .ini file parsing, I/O, +code introspection, and logging.") + (license license:expat))) + +(define-public python2-py + (package-with-python2 python-py)) + +;; Recent versions of python-fixtures and python-testrepository need +;; python-pbr for packaging, which itself needs these two packages for +;; testing. +;; To fix this circular dependency, we use a build of python-pbr, based on the +;; same source, just without any test dependencies and with tests disabled. +;; python-pbr-minmal is then used to package python-fixtures and +;; python-testrepository. +;; Strictly speaking we currently could remove the test-requirements from the +;; normal python-pbr package (and save this package) since test are disabled +;; there anyway. But this may change in future. +(define-public python-pbr-minimal + (package + (name "python-pbr-minimal") + (version "3.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pbr" version)) + (sha256 + (base32 + "14fs5acnalnb3h62s7q7av239j541fk0n0z0lawh4h09b1s93s6p")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) + (home-page "http://docs.openstack.org/developer/pbr/") + (synopsis "Minimal build of python-pbr used for bootstrapping") + (description + "Used only for bootstrapping python2-pbr, you should not need this.") + (license license:asl2.0))) + +(define-public python2-pbr-minimal + (package-with-python2 python-pbr-minimal)) + +(define-public python-pbr + (package + (inherit python-pbr-minimal) + (name "python-pbr") + (arguments + `(#:tests? #f)) ;; Most tests seem to use the Internet. + (propagated-inputs + `(("git" ,git))) ;; pbr actually uses the "git" binary. + (native-inputs + `(("python-fixtures" ,python-fixtures-bootstrap) + ;; discover, coverage, hacking, subunit + ("python-mock" ,python-mock) + ("python-six" ,python-six) + ("python-sphinx" ,python-sphinx) + ("python-testrepository" ,python-testrepository-bootstrap) + ("python-testresources" ,python-testresources-bootstrap) + ("python-testscenarios" ,python-testscenarios-bootstrap) + ("python-testtools" ,python-testtools-bootstrap) + ("python-virtualenv" ,python-virtualenv))) + (synopsis "Enhance the default behavior of Python’s setuptools") + (description + "Python Build Reasonableness (PBR) is a library that injects some useful +and sensible default behaviors into your setuptools run. It will set +versions, process requirements files and generate AUTHORS and ChangeLog file +from git information. +"))) + +(define-public python2-pbr + (package-with-python2 python-pbr)) + +(define-public python-exif-read + (package + (name "python-exif-read") + (version "2.1.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "ExifRead" version)) + (sha256 + (base32 + "1b90jf6m9vxh9nanhpyvqdq7hmfx5iggw1l8kq10jrs6xgr49qkr")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ; no tests + (home-page "https://github.com/ianare/exif-py") + (synopsis "Python library to extract EXIF data from image files") + (description + "ExifRead is a Python library to extract EXIF data from tiff and jpeg +files.") + (license license:bsd-3))) + +(define-public python2-exif-read + (package-with-python2 python-exif-read)) + +(define-public python-pyld + (package + (name "python-pyld") + (version "1.0.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "PyLD" version)) + (sha256 + (base32 + "12i2g6xdj30k7xxcibg3sc5y76snwq8l6n8fy9lyi577kgy0h2pm")))) + (build-system python-build-system) + (home-page "https://github.com/digitalbazaar/pyld") + (synopsis "Python implementation of the JSON-LD specification") + (description + "PyLD is an implementation of the JSON-LD specification.") + (license license:bsd-3))) + +(define-public python2-pyld + (package-with-python2 python-pyld)) + +(define-public python-click + (package + (name "python-click") + (version "6.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "click" version)) + (sha256 + (base32 + "02qkfpykbq35id8glfgwc38yc430427yd05z1wc5cnld8zgicmgi")))) + (build-system python-build-system) + (arguments + `(;; The tests are fragile, depending on a specific version of pytest: + ;; <https://github.com/pallets/click/issues/823> + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((glibc (assoc-ref inputs ,(if (%current-target-system) + "cross-libc" "libc")))) + (substitute* "click/_unicodefun.py" + (("'locale'") + (string-append "'" glibc "/bin/locale'")))) + #t))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "http://click.pocoo.org") + (synopsis "Command line library for Python") + (description + "Click is a Python package for creating command line interfaces in a +composable way with as little code as necessary. Its name stands for +\"Command Line Interface Creation Kit\". It's highly configurable but comes +with sensible defaults out of the box.") + (license license:bsd-3))) + +(define-public python2-click + (package-with-python2 python-click)) + +(define-public python-wheel + (package + (name "python-wheel") + (version "0.30.0a0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "wheel" version)) + (sha256 + (base32 + "1nm6mn8isny0hr86rhbfrpfj867c0phf001xgsd69xfp9ady1wwq")))) + (build-system python-build-system) + (native-inputs + `(("python-jsonschema" ,python-jsonschema) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://bitbucket.org/pypa/wheel/") + (synopsis "Format for built Python packages") + (description + "A wheel is a ZIP-format archive with a specially formatted filename and +the @code{.whl} extension. It is designed to contain all the files for a PEP +376 compatible install in a way that is very close to the on-disk format. Many +packages will be properly installed with only the @code{Unpack} step and the +unpacked archive preserves enough information to @code{Spread} (copy data and +scripts to their final locations) at any later time. Wheel files can be +installed with a newer @code{pip} or with wheel's own command line utility.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-wheel)))))) + +(define-public python2-wheel + (let ((wheel (package-with-python2 + (strip-python2-variant python-wheel)))) + (package (inherit wheel) + (native-inputs `(("python2-functools32" ,python2-functools32) + ,@(package-native-inputs wheel)))))) + +(define-public python-vcversioner + (package + (name "python-vcversioner") + (version "2.16.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "vcversioner" version)) + (sha256 + (base32 + "16z10sm78jd7ca3jbkgc3q5i8a8q7y1h21q1li21yy3rlhbhrrns")))) + (build-system python-build-system) + (synopsis "Python library for version number discovery") + (description "Vcversioner is a Python library that inspects tagging +information in a variety of version control systems in order to discover +version numbers.") + (home-page "https://github.com/habnabit/vcversioner") + (license license:isc))) + +(define-public python2-vcversioner + (package-with-python2 python-vcversioner)) + +(define-public python-jsonschema + (package + (name "python-jsonschema") + (version "2.6.0") + (source (origin + (method url-fetch) + (uri + (string-append + "https://pypi.python.org/packages/source/j/jsonschema/jsonschema-" + version ".tar.gz")) + (sha256 + (base32 + "00kf3zmpp9ya4sydffpifn0j0mzm342a2vzh82p6r0vh10cg7xbg")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check (lambda _ (zero? (system* "nosetests"))))))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-vcversioner" ,python-vcversioner))) + (home-page "https://github.com/Julian/jsonschema") + (synopsis "Implementation of JSON Schema for Python") + (description + "Jsonschema is an implementation of JSON Schema for Python.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-jsonschema)))))) + +(define-public python2-jsonschema + (let ((jsonschema (package-with-python2 + (strip-python2-variant python-jsonschema)))) + (package (inherit jsonschema) + (native-inputs + `(("python2-mock" ,python2-mock) + ,@(package-native-inputs jsonschema))) + (propagated-inputs + `(("python2-functools32" ,python2-functools32)))))) + +(define-public python-schema + (package + (name "python-schema") + (version "0.6.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "schema" version)) + (sha256 + (base32 + "1lw28j9w9vxyigg7vkfkvi6ic9lgjkdnfvnxdr7pklslqvzmk2vm")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/keleshev/schema") + (synopsis "Simple data validation library") + (description + "@code{python-schema} is a library for validating Python data +structures, such as those obtained from config-files, forms, external +services or command-line parsing, converted from JSON/YAML (or +something else) to Python data-types.") + (license license:psfl))) + +(define-public python2-schema + (package-with-python2 python-schema)) + +(define-public python-schema-0.5 + (package (inherit python-schema) + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "schema" version)) + (sha256 + (base32 + "10zqvpaky51kgb8nd42bk7jwl8cn2zvayxjpdc1wwmpybj92x67s")))))) + +(define-public python2-schema-0.5 + (package-with-python2 python-schema-0.5)) + +(define-public python-kitchen + (package + (name "python-kitchen") + (version "1.2.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "kitchen" version)) + (sha256 + (base32 + "1zakh6l0yjvwic9p0nkvmbidpnkygkxbigh2skmb5gccyrhbp7xg")))) + (build-system python-build-system) + (propagated-inputs + `(("python-chardet" ,python-chardet))) + (home-page "https://github.com/fedora-infra/kitchen") + (synopsis "Python API for snippets") + (description "@code{kitchen} module provides a python API for all sorts of +little useful snippets of code that everybody ends up writing for their projects +but never seem big enough to build an independent release. Use kitchen and stop +cutting and pasting that code over and over.") + (license (list license:lgpl2.1+ + ;; subprocess.py, test_subprocess.py, + ;; kitchen/pycompat25/defaultdict.py: + license:psfl)))) + +(define-public python2-kitchen + (package-with-python2 python-kitchen)) + +(define-public python-unidecode + (package + (name "python-unidecode") + (version "1.0.23") + (source (origin + (method url-fetch) + (uri (pypi-uri "Unidecode" version)) + (sha256 + (base32 + "1ysjbr3nqfqj97h8zyj3v9pya413vkv7a1mzml80w37xx15kb1cb")))) + (build-system python-build-system) + (home-page "https://pypi.python.org/pypi/Unidecode") + (synopsis "ASCII transliterations of Unicode text") + (description + "Unidecode provides ASCII transliterations of Unicode text. Unidecode is +useful when integrating with legacy code that doesn't support Unicode, or for +ease of entry of non-Roman names on a US keyboard, or when constructing ASCII +machine identifiers from human-readable Unicode strings that should still be +somewhat intelligible.") + (license license:gpl2+))) + +(define-public python2-unidecode + (package-with-python2 python-unidecode)) + +(define-public python-pyjwt + (package + (name "python-pyjwt") + (version "1.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyJWT" version)) + (sha256 + (base32 + "1rxsg14i33vm2i6lz0my628108c81k43v10n4h3p0gx62xdyf2sh")) + (modules '((guix build utils))) + (snippet + '(begin + (for-each delete-file-recursively + (find-files "." "\\.pyc$")) + #t)))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/progrium/pyjwt") + (synopsis "JSON Web Token implementation in Python") + (description + "PyJWT is a JSON Web Token implementation written in Python.") + (license license:expat))) + +(define-public python2-pyjwt + (package-with-python2 python-pyjwt)) + +(define-public python-pykka + (package + (name "python-pykka") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pykka" version)) + (sha256 + (base32 + "049w3r0mdnnw7xv19jiq7rvls9k7xs73x05b4qs5d6z4vvmgyiz8")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose) + ("python-gevent" ,python-gevent) + ("python-eventlet" ,python-eventlet))) + (home-page "https://www.pykka.org/") + (synopsis "Pykka is a Python implementation of the actor model") + (description + "Pykka is a Python implementation of the actor model. +The actor model introduces some simple rules to control the sharing +of state and cooperation between execution units, which makes it +easier to build concurrent applications.") + (license license:asl2.0))) + +(define-public python2-pykka + (package-with-python2 python-pykka)) + +(define-public python-pympler + (package + (name "python-pympler") + (home-page "https://pythonhosted.org/Pympler/") + (version "0.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "Pympler" version)) + (sha256 + (base32 + "03qwsbilqgvnbl3a1jmpgixbr2kq6m3fvdlzyr3wdp01bwlc85kx")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "python" "setup.py" "test")))))) + (synopsis "Measure, monitor and analyze memory behavior") + (description + "Pympler is a development tool to measure, monitor and analyze +the memory behavior of Python objects in a running Python application. + +By pympling a Python application, detailed insight in the size and the +lifetime of Python objects can be obtained. Undesirable or unexpected +runtime behavior like memory bloat and other @samp{pymples} can easily +be identified. + +A web profiling frontend exposes process statistics, garbage +visualisation and class tracker statistics.") + (license license:asl2.0))) + +(define-public python2-pympler + (package-with-python2 python-pympler)) + +(define-public python-itsdangerous + (package + (name "python-itsdangerous") + (version "0.24") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/i/itsdangerous/itsdangerous-" + version ".tar.gz")) + (sha256 + (base32 + "06856q6x675ly542ig0plbqcyab6ksfzijlyf1hzhgg3sgwgrcyb")))) + (build-system python-build-system) + (home-page "https://github.com/mitsuhiko/itsdangerous") + (synopsis "Python library for passing data to/from untrusted environments") + (description + "Itsdangerous provides various helpers to pass trusted data to untrusted +environments and back.") + (license license:bsd-3))) + +(define-public python2-itsdangerous + (package-with-python2 python-itsdangerous)) + +(define-public python-pyyaml + (package + (name "python-pyyaml") + (version "3.13") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyYAML" version)) + (sha256 + (base32 + "1gx603g484z46cb74j9rzr6sjlh2vndxayicvlyhxdz98lhhkwry")))) + (build-system python-build-system) + (inputs + `(("libyaml" ,libyaml))) + (home-page "http://pyyaml.org/wiki/PyYAML") + (synopsis "YAML parser and emitter for Python") + (description + "PyYAML is a YAML parser and emitter for Python. PyYAML features a +complete YAML 1.1 parser, Unicode support, pickle support, capable extension +API, and sensible error messages. PyYAML supports standard YAML tags and +provides Python-specific tags that allow to represent an arbitrary Python +object.") + (license license:expat))) + +(define-public python2-pyyaml + (package-with-python2 python-pyyaml)) + +(define-public python-vine + (package + (name "python-vine") + (version "1.1.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "vine" version)) + (sha256 + (base32 + "0wkskb2hb494v9gixqnf4bl972p4ibcmxdykzpwjlfa5picns4aj")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-case" ,python-case))) + (home-page "https://github.com/celery/vine") + (synopsis "Promises for Python") + (description + "@code{vine} provides a special implementation of promises in that it can +be used both for \"promise of a value\" and lazy evaluation. The biggest +upside for this is that everything in a promise can also be a promise, +e.g. filters, callbacks and errbacks can all be promises.") + (license license:bsd-3))) + +(define-public python-virtualenv + (package + (name "python-virtualenv") + (version "15.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "virtualenv" version)) + (sha256 + (base32 + "07cbajzk8l05k5zhlw0b9wbf2is65bl9v6zrn2a0iyn57w6pd73d")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Disable failing test. See upstream bug report + ;; https://github.com/pypa/virtualenv/issues/957 + (substitute* "tests/test_virtualenv.py" + (("skipif.*") "skipif(True, reason=\"Guix\")\n")) + (zero? (system* "py.test"))))))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest))) + (home-page "https://virtualenv.pypa.io/") + (synopsis "Virtual Python environment builder") + (description + "Virtualenv is a tool to create isolated Python environments.") + (license license:expat))) + +(define-public python2-virtualenv + (package-with-python2 python-virtualenv)) + +(define-public python-markupsafe + (package + (name "python-markupsafe") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/M/MarkupSafe/MarkupSafe-" + version ".tar.gz")) + (sha256 + (base32 + "0rdn1s8x9ni7ss8rfiacj7x1085lx8mh2zdwqslnw8xc3l4nkgm6")))) + (build-system python-build-system) + (home-page "https://github.com/mitsuhiko/markupsafe") + (synopsis "XML/HTML/XHTML markup safe string implementation for Python") + (description + "Markupsafe provides an XML/HTML/XHTML markup safe string implementation +for Python.") + (license license:bsd-3))) + +(define-public python2-markupsafe + (package-with-python2 python-markupsafe)) + +(define-public python-jinja2 + (package + (name "python-jinja2") + (version "2.10") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Jinja2" version)) + (sha256 + (base32 + "190l36hfw3wb2n3n68yacjabxyb1pnxwn7vjx96cmjj002xy2jzq")))) + (build-system python-build-system) + (propagated-inputs + `(("python-markupsafe" ,python-markupsafe))) + (home-page "http://jinja.pocoo.org/") + (synopsis "Python template engine") + (description + "Jinja2 is a small but fast and easy to use stand-alone template engine +written in pure Python.") + (license license:bsd-3))) + +(define-public python2-jinja2 + (package-with-python2 python-jinja2)) + +(define-public python-pystache + (package + (name "python-pystache") + (version "0.5.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "pystache" version)) + (sha256 + (base32 + "0nmqsfmiw4arjxqkmf9z66ml950pcdjk6aq4gin4sywmzdjw5fzp")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; FIXME: Python 3 tests are failing. + (home-page "http://defunkt.io/pystache/") + (synopsis "Python logic-less template engine") + (description + "Pystache is a Python implementation of the framework agnostic, +logic-free templating system Mustache.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-pystache)))))) + +(define-public python2-pystache + (package (inherit (package-with-python2 + (strip-python2-variant python-pystache))) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "python" "test_pystache.py"))))))))) + +(define-public python-joblib + (package + (name "python-joblib") + (version "0.13.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "joblib" version)) + (sha256 + (base32 + "0612nazad8dxmn3xghfrmjax6456l4xy6hn9cngs7vydi14ds7v5")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "pytest" "-v" "joblib")))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://joblib.readthedocs.io/") + (synopsis "Using Python functions as pipeline jobs") + (description + "Joblib is a set of tools to provide lightweight pipelining in Python. +In particular, joblib offers: transparent disk-caching of the output values +and lazy re-evaluation (memoize pattern), easy simple parallel computing +logging and tracing of the execution.") + (license license:bsd-3))) + +(define-public python2-joblib + (package-with-python2 python-joblib)) + +(define-public python-docutils + (package + (name "python-docutils") + (version "0.14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "docutils" version)) + (sha256 + (base32 + "0x22fs3pdmr42kvz6c654756wja305qv6cx1zbhwlagvxgr4xrji")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; no setup.py test command + (home-page "http://docutils.sourceforge.net/") + (synopsis "Python Documentation Utilities") + (description + "Docutils is a modular system for processing documentation into useful +formats, such as HTML, XML, and LaTeX. For input Docutils supports +reStructuredText.") + ;; Most of the source code is public domain, but some source files are + ;; licensed under the PFSL, BSD 2-clause, and GPLv3+ licenses. + (license (list license:public-domain license:psfl license:bsd-2 license:gpl3+)))) + +(define-public python2-docutils + (package-with-python2 python-docutils)) + +(define-public python-pygments + (package + (name "python-pygments") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pygments" version)) + (sha256 + (base32 + "1k78qdvir1yb1c634nkv6rbga8wv4289xarghmsbbvzhvr311bnv")))) + (build-system python-build-system) + (arguments + ;; FIXME: Tests require sphinx, which depends on this. + '(#:tests? #f)) + (home-page "http://pygments.org/") + (synopsis "Syntax highlighting") + (description + "Pygments is a syntax highlighting package written in Python.") + (license license:bsd-2))) + +(define-public python2-pygments + (package-with-python2 python-pygments)) + +(define-public python-sphinxcontrib-websupport + (package + (name "python-sphinxcontrib-websupport") + (version "1.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "sphinxcontrib-websupport" version)) + (sha256 + (base32 + "1ff3ix76xi1y6m99qxhaq5161ix9swwzydilvdya07mgbcvpzr4x")))) + (build-system python-build-system) + (arguments + ;; FIXME: Tests depend on Sphinx, which depends on this. + `(#:tests? #f)) + (home-page "http://sphinx-doc.org/") + (synopsis "Sphinx API for web applications") + (description "This package provides a Python API to easily integrate +Sphinx documentation into your web application. It provides tools to +integrate Sphinx documents in web templates and to handle searches.") + (license license:bsd-3))) + +(define-public python2-sphinxcontrib-websupport + (package-with-python2 python-sphinxcontrib-websupport)) + +(define-public python-sphinx + (package + (name "python-sphinx") + (version "1.7.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Sphinx" version)) + (sha256 + (base32 + "0pkkbfj7cl157q550gcs45am5y78ps0h7q6455d64s1zmw01jlvi")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Requires Internet access. + (delete-file "tests/test_build_linkcheck.py") + (substitute* "tests/test_build_latex.py" + (("@pytest.mark.sphinx\\('latex', testroot='images'\\)") + "@pytest.mark.skip()")) + (when (which "python") + ;; XXX: These tests are broken when using Python2: + ;; <https://github.com/sphinx-doc/sphinx/issues/4710>. + (delete-file "tests/test_api_translator.py") + (delete-file "tests/test_setup_command.py")) + (invoke "make" "test")))))) + (propagated-inputs + `(("python-imagesize" ,python-imagesize) + ("python-sphinx-alabaster-theme" + ,python-sphinx-alabaster-theme) + ("python-babel" ,python-babel) + ("python-snowballstemmer" ,python-snowballstemmer) + ("python-docutils" ,python-docutils) + ("python-jinja2" ,python-jinja2) + ("python-packaging" ,python-packaging) + ("python-pygments" ,python-pygments) + ("python-requests" ,python-requests) + ("python-six" ,python-six) + ("python-sphinxcontrib-websupport" ,python-sphinxcontrib-websupport))) + (native-inputs + `(("graphviz" ,graphviz) + ("imagemagick" ,imagemagick) ;for "convert" + ("python-html5lib" ,python-html5lib) + ("python-mock" ,python-mock) + ("python-nose" ,python-nose) + ("python-pytest" ,python-pytest))) + (home-page "http://sphinx-doc.org/") + (synopsis "Python documentation generator") + (description "Sphinx is a tool that makes it easy to create documentation +for Python projects or other documents consisting of multiple reStructuredText +sources.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-sphinx)))))) + +(define-public python2-sphinx + (let ((base (package-with-python2 (strip-python2-variant python-sphinx)))) + (package + (inherit base) + (native-inputs `(("python2-mock" ,python2-mock) + ("python2-enum34" ,python2-enum34) + ,@(package-native-inputs base))) + (propagated-inputs `(("python2-pytz" ,python2-pytz) + ("python2-typing" ,python2-typing) + ,@(package-propagated-inputs base)))))) + +(define-public python-sphinx-gallery + (package + (name "python-sphinx-gallery") + (version "0.1.13") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/sphinx-gallery/sphinx-gallery" + "/archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "03fs99mcb1r7qp0xixqv07vcz98sk21yq19ffdysi0infdcpzfkd")))) + (build-system python-build-system) + (arguments + ;; FIXME: Tests attempt to download <https://docs.python.org/3/objects.inv>, + ;; <https://docs.scipy.org/doc/numpy/objects.inv>, and + ;; <https://matplotlib.org/objects.inv>. + `(#:tests? #f)) + (native-inputs + `(("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://sphinx-gallery.github.io/") + (synopsis "Generate an examples gallery automatically") + (description + "@code{sphinx_gallery} is a Sphinx extension that builds an HTML version +from any set of Python scripts and puts it into an examples gallery.") + (license license:bsd-3))) + +(define-public python2-sphinx-gallery + (package-with-python2 python-sphinx-gallery)) + +(define-public python-sphinx-rtd-theme + (package + (name "python-sphinx-rtd-theme") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sphinx_rtd_theme" version)) + (sha256 + (base32 + "05rlhjzdyapr2w74jjs7mrm8hi69qskcr5vya9f9drpsys7lpxrd")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; No tests. + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/snide/sphinx_rtd_theme/") + (synopsis "ReadTheDocs.org theme for Sphinx") + (description "A theme for Sphinx used by ReadTheDocs.org.") + (license license:expat))) + +(define-public python2-sphinx-rtd-theme + (package-with-python2 python-sphinx-rtd-theme)) + +(define-public python-guzzle-sphinx-theme + (package + (name "python-guzzle-sphinx-theme") + (version "0.7.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "guzzle_sphinx_theme" version)) + (sha256 + (base32 + "1rnkzrrsbnifn3vsb4pfaia3nlvgvw6ndpxp7lzjrh23qcwid34v")))) + (build-system python-build-system) + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/guzzle/guzzle_sphinx_theme") + (synopsis "Sphinx theme used by Guzzle") + (description "This package provides guzzle_sphinx_theme, a theme for the +Sphinx documentation system, used by @uref{http://docs.guzzlephp.org, Guzzle} +and several other projects.") + (license license:expat))) + +(define-public python2-guzzle-sphinx-theme + (package-with-python2 python-guzzle-sphinx-theme)) + +(define-public python-rst.linker + (package + (name "python-rst.linker") + (version "1.10") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rst.linker" version)) + (sha256 + (base32 + "0iqaacp7pj1s8avs4kc0qg0r7dscywaq37y6l9j14glqdikk0wdj")))) + (build-system python-build-system) + (propagated-inputs + `(("python-dateutil" ,python-dateutil) + ("python-six" ,python-six))) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + ;; Test would require path.py, which would introduce a cyclic dependence. + (arguments `(#:tests? #f)) + ;; Note: As of version 1.7 the documentation is not worth building. + (home-page "https://github.com/jaraco/rst.linker") + (synopsis "Sphinx plugin to add links and timestamps") + (description "rst.linker allows to automatically replace text by a +reStructuredText external reference or timestamps. It's primary purpose is to +augment the changelog, but it can be used for other documents, too.") + (license license:expat))) + +(define-public python2-rst.linker + (package-with-python2 python-rst.linker)) + +(define-public python-feedgenerator + (package + (name "python-feedgenerator") + (version "1.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "feedgenerator" version)) + (sha256 + (base32 + "01mirwkm7xfx539hmvj7g9da1j51gw5lsx74dr0glizskjm5vq2s")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) + (build-system python-build-system) + (propagated-inputs + `(("python-pytz" ,python-pytz) + ("python-six" ,python-six))) + (home-page "https://github.com/getpelican/feedgenerator") + (synopsis + "Standalone version of Django's Atom/RSS feed generator") + (description + "Feedgenerator-py3k is a standalone version of Django's feedgenerator, +which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") + (license license:bsd-3))) + +(define-public python2-feedgenerator + (package-with-python2 python-feedgenerator)) + +(define-public python-toml + (package + (name "python-toml") + (version "0.9.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "toml" version)) + (sha256 + (base32 + "0bdbpbip67wdm6c7xwc6mmbmskyradj4cdxn1iibj4fcx1nbv1lf")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;no tests suite in release + (home-page "https://github.com/uiri/toml") + (synopsis "Library for TOML") + (description + "@code{toml} is a library for parsing and creating Tom's Obvious, Minimal +Language (TOML) configuration files.") + (license license:expat))) + +(define-public python-black + (package + (name "python-black") + (version "18.6b4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "black" version)) + (sha256 + (base32 + "0i4sfqgz6w15vd50kbhi7g7rifgqlf8yfr8y78rypd56q64qn592")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'patch-source-shebangs 'patch-extra-shebangs + (lambda _ + (let ((python3 (which "python3"))) + (substitute* '("tests/data/fmtonoff.py" + "tests/data/string_prefixes.py" + "tests/data/function.py") + (("#!/usr/bin/env python3(\\.[0-9]+)?" _ minor-version) + (string-append "#!" python3 (if (string? minor-version) + minor-version + "")))))))))) + (propagated-inputs + `(("python-click" ,python-click) + ("python-attrs" ,python-attrs) + ("python-appdirs" ,python-appdirs) + ("python-toml" ,python-toml))) + (home-page "https://github.com/ambv/black") + (synopsis "The uncompromising code formatter") + (description "Black is the uncompromising Python code formatter.") + (license license:expat))) + +(define-public python-blinker + (package + (name "python-blinker") + (version "1.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "blinker" version)) + (sha256 + (base32 + "1dpq0vb01p36jjwbhhd08ylvrnyvcc82yxx3mwjx6awrycjyw6j7")))) + (build-system python-build-system) + (home-page "http://pythonhosted.org/blinker/") + (synopsis "Fast, simple object-to-object and broadcast signaling") + (description + "Blinker provides a fast dispatching system that allows any number of +interested parties to subscribe to events, or \"signals\".") + (license license:expat))) + +(define-public python2-blinker + (package-with-python2 python-blinker)) + +(define-public pelican + (package + (name "pelican") + (version "3.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pelican" version)) + (sha256 + (base32 + "12spygavv9b6xpb5pgp7f0p3z0mms60nx6zrpx1yfkj68zz4flra")))) + (build-system python-build-system) + (propagated-inputs + `(("python-feedgenerator" ,python-feedgenerator) + ("python-jinja2" ,python-jinja2) + ("python-pygments" ,python-pygments) + ("python-docutils" ,python-docutils) + ("python-pytz" ,python-pytz) + ("python-blinker" ,python-blinker) + ("python-unidecode" ,python-unidecode) + ("python-six" ,python-six) + ("python-dateutil" ,python-dateutil) + ("python-markdown" ,python-markdown))) + (home-page "https://getpelican.com/") + (arguments + `(;; XXX Requires a lot more packages to do unit tests :P + #:tests? #f + #:phases (modify-phases %standard-phases + (add-before + 'install 'adjust-requires + ;; Since feedgenerator is installed from git, it doesn't + ;; conform to the version requirements. + ;; + ;; We *do have* "feedgenerator >= 1.6", but strip off the + ;; version requirement so setuptools doesn't get confused. + (lambda _ + (substitute* "setup.py" + (("['\"]feedgenerator.*?['\"]") + "'feedgenerator'"))))))) + (synopsis "Python-based static site publishing system") + (description + "Pelican is a tool to generate a static blog from reStructuredText, +Markdown input files, and more. Pelican uses Jinja2 for templating +and is very extensible.") + (license license:agpl3+))) + +(define-public python-scikit-image + (package + (name "python-scikit-image") + (version "0.14.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "scikit-image" version)) + (sha256 + (base32 "0l1c3rl4s1jyv80i5hns4pgih09zrxfj7lygdc51w8sgyysb7ac6")))) + (build-system python-build-system) + (arguments + ;; TODO: Some tests require running X11 server. Disable them? + '(#:tests? #f)) + ;; See DEPENDS.txt for the list of build and run time requiremnts + (propagated-inputs + `(("python-cloudpickle" ,python-cloudpickle) + ("python-dask" ,python-dask) + ("python-matplotlib" ,python-matplotlib) + ("python-networkx" ,python-networkx) + ("python-numpy" ,python-numpy) + ("python-pillow" ,python-pillow) + ("python-pywavelets" ,python-pywavelets) + ("python-scipy" ,python-scipy) + ("python-six" ,python-six))) + (native-inputs + `(("python-cython" ,python-cython))) + (home-page "http://scikit-image.org/") + (synopsis "Image processing in Python") + (description + "Scikit-image is a collection of algorithms for image processing.") + (license license:bsd-3))) + +(define-public python2-scikit-image + (package-with-python2 python-scikit-image)) + +(define-public python-cython + (package + (name "python-cython") + (version "0.28.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Cython" version)) + (sha256 + (base32 + "0imw9s2rbrh32clbl10csnwmig9p3nzkrd2baxxxfmnrsc42pb3n")))) + (build-system python-build-system) + ;; we need the full python package and not just the python-wrapper + ;; because we need libpython3.3m.so + (inputs + `(("python" ,python))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'set-HOME + ;; some tests require access to "$HOME/.cython" + (lambda _ (setenv "HOME" "/tmp") #t)) + + ;; FIXME: These tests started failing on armhf after the 0.28 update + ;; (commit c69d11c5930), both with an error such as this: + ;; compiling (cpp) and running dictcomp ... + ;; === C/C++ compiler error output: === + ;; ‘ + ;; dictcomp.cpp:5221: confused by earlier errors, bailing out + ;; See <https://hydra.gnu.org/build/2948724> for logs. + ,@(if (target-arm32?) + `((add-before 'check 'disable-failing-tests + (lambda _ + (let ((disabled-tests (open-file "tests/bugs.txt" "a"))) + (for-each (lambda (test) + (format disabled-tests "~a\n" test)) + '("memslice" "dictcomp")) + (close-port disabled-tests))))) + '()) + + (replace 'check + (lambda _ + ;; The "with_outer_raising" test fails with Python 3.7. See + ;; https://github.com/cython/cython/issues/2454 + (delete-file "tests/run/generators_py.py") + (invoke "python" "runtests.py" "-vv")))))) + (home-page "http://cython.org/") + (synopsis "C extensions for Python") + (description "Cython is an optimising static compiler for both the Python +programming language and the extended Cython programming language. It makes +writing C extensions for Python as easy as Python itself.") + (license license:asl2.0) + (properties `((python2-variant . ,(delay python2-cython)))))) + +(define-public python2-cython + (package (inherit (package-with-python2 + (strip-python2-variant python-cython))) + (name "python2-cython") + (inputs + `(("python-2" ,python-2))))) ; this is not automatically changed + +;; The RPython toolchain currently does not support Python 3. +(define-public python2-rpython + (package + (name "python2-rpython") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rpython" version)) + (sha256 + (base32 + "02z9cvxf0y41dcvwnvf2zn0albhhw1drvjjbq27m6i1piw1k6fc0")))) + (build-system python-build-system) + (arguments `(#:python ,python-2)) + (native-inputs + `(("python2-pytest" ,python2-pytest))) ; needed for running tests + (home-page "https://rpython.readthedocs.org") + (synopsis "Framework for implementing interpreters and virtual machines") + (description "RPython is a translation and support framework for +producing implementations of dynamic languages, emphasizing a clean separation +between language specification and implementation aspects.") + (license license:expat))) + +;; NOTE: when upgrading numpy please make sure that python-pandas and +;; python-scipy still build, as these three packages are often used together. +(define-public python-numpy + (package + (name "python-numpy") + (version "1.15.4") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/numpy/numpy/releases/download/v" + version "/numpy-" version ".tar.gz")) + (sha256 + (base32 + "102vcl2qq4pjbm7a3d67vkkvn4466ngia1d8wi5avqwqh8j0jvkn")))) + (build-system python-build-system) + (inputs + `(("openblas" ,openblas) + ("lapack" ,lapack))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest) + ("gfortran" ,gfortran))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'configure-blas-lapack + (lambda* (#:key inputs #:allow-other-keys) + (call-with-output-file "site.cfg" + (lambda (port) + (format port + "[openblas] +libraries = openblas +library_dirs = ~a/lib +include_dirs = ~a/include + +# backslash-n to make emacs happy +\n[lapack] +lapack_libs = lapack +library_dirs = ~a/lib +include_dirs = ~a/include +" + (assoc-ref inputs "openblas") + (assoc-ref inputs "openblas") + (assoc-ref inputs "lapack") + (assoc-ref inputs "lapack")))) + #t)) + (add-before 'build 'fix-executable-paths + (lambda* (#:key inputs #:allow-other-keys) + ;; Make /gnu/store/...-bash-.../bin/sh the default shell, + ;; instead of /bin/sh. + (substitute* "numpy/distutils/exec_command.py" + (("(os.environ.get\\('SHELL', ')(/bin/sh'\\))" match match-start match-end) + (string-append match-start (assoc-ref inputs "bash") match-end))) + ;; Use "gcc" executable, not "cc". + (substitute* "numpy/distutils/system_info.py" + (("c = distutils\\.ccompiler\\.new_compiler\\(\\)") + "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')")) + #t)) + ;; Tests can only be run after the library has been installed and not + ;; within the source directory. + (delete 'check) + (add-after 'install 'check + (lambda* (#:key outputs inputs #:allow-other-keys) + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) + ;; Make sure "f2py" etc is found. + (setenv "PATH" (string-append (assoc-ref outputs "out") "/bin" + ":" (getenv "PATH"))) + (with-directory-excursion "/tmp" + (invoke "python" "-c" + "import numpy; numpy.test(verbose=2)"))))))) + (home-page "http://www.numpy.org/") + (synopsis "Fundamental package for scientific computing with Python") + (description "NumPy is the fundamental package for scientific computing +with Python. It contains among other things: a powerful N-dimensional array +object, sophisticated (broadcasting) functions, tools for integrating C/C++ +and Fortran code, useful linear algebra, Fourier transform, and random number +capabilities.") + (license license:bsd-3))) + +(define-public python2-numpy + (package-with-python2 python-numpy)) + +;; NOTE: NumPy 1.8 is packaged only for Python 2 because it is of +;; interest only for legacy code going back to NumPy's predecessor +;; Numeric. +(define-public python2-numpy-1.8 + (package (inherit python2-numpy) + (version "1.8.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/numpy/numpy/archive/v" version ".tar.gz")) + (file-name (string-append "python2-numpy-" version ".tar.gz")) + (sha256 + (base32 + "0sc20gz1b17xnyrkp5frca3ql5qfalpv916hfg2kqxpwr6jg0f1g")))) + (arguments + (substitute-keyword-arguments (package-arguments python2-numpy) + ((#:phases phases) + `(modify-phases ,phases + (replace 'configure-blas-lapack + (lambda* (#:key inputs #:allow-other-keys) + (call-with-output-file "site.cfg" + (lambda (port) + (format port + "[openblas] +libraries = openblas,lapack +library_dirs = ~a/lib:~a/lib +include_dirs = ~a/include:~a/include +" + (assoc-ref inputs "openblas") + (assoc-ref inputs "lapack") + (assoc-ref inputs "openblas") + (assoc-ref inputs "lapack")))) + #t)))))) + (native-inputs + `(("python2-nose" ,python2-nose))) + (description "NumPy is the fundamental package for scientific computing +with Python. It contains among other things: a powerful N-dimensional array +object, sophisticated (broadcasting) functions, tools for integrating C/C++ +and Fortran code, useful linear algebra, Fourier transform, and random number +capabilities. Version 1.8 is the last one to contain the numpy.oldnumeric API +that includes the compatibility layer numpy.oldnumeric with NumPy's predecessor +Numeric.") + (license license:bsd-3))) + +(define-public python-munch + (package + (name "python-munch") + (version "2.0.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "munch" version)) + (sha256 + (base32 + "1cmqg91xnqx8gvnh4pmp0bfl1dfcm65d5p9mg73zz8pkjhx6h80l")))) + (build-system python-build-system) + (home-page "https://github.com/Infinidat/munch") + (synopsis "Dot-accessible dictionary") + (description "Munch is a dot-accessible dictionary similar to JavaScript +objects.") + (license license:expat))) + +(define-public python2-munch + (package-with-python2 python-munch)) + +(define-public python-colormath + (package + (name "python-colormath") + (version "3.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "colormath" version)) + (sha256 + (base32 + "05qjycgxp3p2f9n6lmic68sxmsyvgnnlyl4z9w7dl9s56jphaiix")))) + (build-system python-build-system) + (propagated-inputs + `(("python-networkx" ,python-networkx) + ("python-numpy" ,python-numpy))) + (home-page "https://github.com/gtaylor/python-colormath") + (synopsis "Color math and conversion library") + (description + "This is a Python library for color math and conversions.") + (license license:bsd-3))) + +(define-public python2-colormath + (package-with-python2 python-colormath)) + +(define-public python-spectra + (package + (name "python-spectra") + (version "0.0.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "spectra" version)) + (sha256 + (base32 + "1f322x914bhkg6r5gv1vmnir3iy0k5kih0fd2gp3rdkw32jn5cwf")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "nosetests" "-v"))))))) + (propagated-inputs + `(("python-colormath" ,python-colormath))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://github.com/jsvine/spectra") + (synopsis "Color scales and color conversion") + (description + "This package provides a Python library intended to make color math, +color scales, and color space conversion easy. It has support for: + +@enumerate +@item Color scales +@item Color ranges +@item Color blending +@item Brightening/darkening colors +@item Saturating/desaturating colors +@item Conversion to/from multiple color spaces. +@end enumerate\n") + (license license:expat))) + +(define-public python2-spectra + (package-with-python2 python-spectra)) + +(define-public python-numpy-documentation + (package + (name "python-numpy-documentation") + (version (package-version python-numpy)) + (source (package-source python-numpy)) + (build-system python-build-system) + (native-inputs + `(("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("pkg-config" ,pkg-config) + ("python-sphinx" ,python-sphinx) + ("python-numpydoc" ,python-numpydoc) + ("texlive" ,(texlive-union (list texlive-fonts-amsfonts + texlive-fonts-cm-super + texlive-fonts-ec + texlive-generic-ifxetex + texlive-generic-pdftex + texlive-latex-amsfonts + texlive-latex-capt-of + texlive-latex-cmap + texlive-latex-environ + texlive-latex-eqparbox + texlive-latex-etoolbox + texlive-latex-expdlist + texlive-latex-fancyhdr + texlive-latex-fancyvrb + texlive-latex-fncychap + texlive-latex-float + texlive-latex-framed + texlive-latex-geometry + texlive-latex-graphics + texlive-latex-hyperref + texlive-latex-mdwtools + texlive-latex-multirow + texlive-latex-needspace + texlive-latex-oberdiek + texlive-latex-parskip + texlive-latex-preview + texlive-latex-tabulary + texlive-latex-threeparttable + texlive-latex-titlesec + texlive-latex-trimspaces + texlive-latex-ucs + texlive-latex-upquote + texlive-latex-url + texlive-latex-varwidth + texlive-latex-wrapfig))) + ("texinfo" ,texinfo) + ("perl" ,perl) + ("scipy-sphinx-theme" + ,(origin ; The build script expects scipy-sphinx-theme as a git submodule + (method git-fetch) + (uri (git-reference + (url "https://github.com/scipy/scipy-sphinx-theme.git") + (commit "c466764e2231ba132c09826b5b138fffa1cfcec3"))) + (sha256 + (base32 + "0q2y87clwlsgc7wvlsn9pzyssybcq10plwhq2w1ydykfsyyqbmkl")))) + ,@(package-native-inputs python-numpy))) + (arguments + `(#:tests? #f ; we're only generating the documentation + #:phases + (modify-phases %standard-phases + (delete 'build) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "out") "/share")) + (doc (string-append + data "/doc/" ,name "-" + ,(package-version python-numpy))) + (info-reader (string-append data "/info")) + (html (string-append doc "/html")) + (scipy-sphinx-theme "scipy-sphinx-theme") + (sphinx-theme-checkout (assoc-ref inputs scipy-sphinx-theme)) + (pyver ,(string-append "PYVER="))) + + ;; FIXME: this is needed to for texlive-union to generate + ;; fonts, which are not found. + (setenv "HOME" "/tmp") + + (with-directory-excursion "doc" + (copy-recursively sphinx-theme-checkout scipy-sphinx-theme) + (mkdir-p html) + (system* "make" "html" pyver) + (system* "make" "latex" "PAPER=a4" pyver) + (system* "make" "-C" "build/latex" + "all-pdf" "PAPER=a4" pyver) + ;; FIXME: Generation of the info file fails. + ;; (system* "make" "info" pyver) + ;; (mkdir-p info) + ;; (copy-file "build/texinfo/numpy.info" + ;; (string-append info "/numpy.info")) + (for-each (lambda (file) + (copy-file (string-append "build/latex" file) + (string-append doc file))) + '("/numpy-ref.pdf" "/numpy-user.pdf")) + (with-directory-excursion "build/html" + (for-each (lambda (file) + (let* ((dir (dirname file)) + (tgt-dir (string-append html "/" dir))) + (unless (equal? "." dir) + (mkdir-p tgt-dir)) + (install-file file html))) + (find-files "." ".*"))))) + #t))))) + (home-page (package-home-page python-numpy)) + (synopsis "Documentation for the python-numpy package") + (description (package-description python-numpy)) + (license (package-license python-numpy)))) + +(define-public python2-numpy-documentation + (let ((numpy-documentation (package-with-python2 python-numpy-documentation))) + (package + (inherit numpy-documentation) + (native-inputs `(("python2-functools32" ,python2-functools32) + ,@(package-native-inputs numpy-documentation)))))) + +(define-public python-pygit2 + (package + (name "python-pygit2") + (version "0.27.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pygit2" version)) + (sha256 + (base32 + "046ahvsb7a20sgvscqfm3cb32sp3sii4gim9vz7zzrkf7yz16xlv")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + ;; Remove after the next update. See: + ;; https://github.com/libgit2/pygit2/pull/851 + (add-after 'unpack 'compile-with-cffi + (lambda _ + (substitute* "setup.py" + (("install_requires") + "setup_requires=['cffi'],\n install_requires")) + #t)) + (add-after 'unpack 'fix-dependency-versioning + (lambda _ + (substitute* "setup.py" + (("<") "<=")) + #t))))) + (propagated-inputs + `(("python-six" ,python-six) + ("python-cffi" ,python-cffi) + ("libgit2" ,libgit2) + ("python-tox" ,python-tox))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/libgit2/pygit2") + (synopsis "Python bindings for libgit2") + (description "Pygit2 is a set of Python bindings to the libgit2 shared +library, libgit2 implements Git plumbing.") + ;; GPL2.0 only, with linking exception. + (license license:gpl2))) + +(define-public python2-pygit2 + (package-with-python2 python-pygit2)) + +(define-public python-pyparsing + (package + (name "python-pyparsing") + (version "2.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyparsing" version)) + (sha256 + (base32 "06dgd0iilvf8m0ssmfpcbh8l6jf0zkp8adbb84llksg17crfx4zl")))) + (build-system python-build-system) + (outputs '("out" "doc")) + (arguments + `(#:tests? #f ; no test target + #:phases + (modify-phases %standard-phases + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((doc (string-append (assoc-ref outputs "doc") + "/share/doc/" ,name "-" ,version)) + (html-doc (string-append doc "/html")) + (examples (string-append doc "/examples"))) + (mkdir-p html-doc) + (mkdir-p examples) + (for-each + (lambda (dir tgt) + (map (lambda (file) + (install-file file tgt)) + (find-files dir ".*"))) + (list "docs" "htmldoc" "examples") + (list doc html-doc examples)) + #t)))))) + (home-page "https://github.com/pyparsing/pyparsing") + (synopsis "Python parsing class library") + (description + "The pyparsing module is an alternative approach to creating and +executing simple grammars, vs. the traditional lex/yacc approach, or the use +of regular expressions. The pyparsing module provides a library of classes +that client code uses to construct the grammar directly in Python code.") + (license license:expat))) + +(define-public python2-pyparsing + (package-with-python2 python-pyparsing)) + +(define-public python-numpydoc + (package + (name "python-numpydoc") + (version "0.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "numpydoc" version)) + (sha256 + (base32 + "1zazxg3m8j4fksv3f7v7vpf4bj9qb1vj3r326am0vdip141vzx31")))) + (build-system python-build-system) + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://pypi.python.org/pypi/numpydoc") + (synopsis + "Numpy's Sphinx extensions") + (description + "Sphinx extension to support docstrings in Numpy format.") + (license license:bsd-2))) + +(define-public python2-numpydoc + (package-with-python2 python-numpydoc)) + +(define-public python-numexpr + (package + (name "python-numexpr") + (version "2.6.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "numexpr" version)) + (sha256 + (base32 + "1frnbcwmsi312154x274xl28xazr1k8vjby83fwyla2n10a81bgq")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ; no tests included + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (home-page "https://github.com/pydata/numexpr") + (synopsis "Fast numerical expression evaluator for NumPy") + (description + "Numexpr is a fast numerical expression evaluator for NumPy. With it, +expressions that operate on arrays are accelerated and use less memory than +doing the same calculation in Python. In addition, its multi-threaded +capabilities can make use of all your cores, which may accelerate +computations, most specially if they are not memory-bounded (e.g. those using +transcendental functions).") + (license license:expat))) + +(define-public python2-numexpr + (package-with-python2 python-numexpr)) + +(define-public python-cycler + (package + (name "python-cycler") + (version "0.10.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "cycler" version)) + (sha256 + (base32 + "1n69n23fak1gjxlrbhqisi2b9pv3ckrfj98llx3p53953082syyd")))) + (build-system python-build-system) + (arguments + ;; XXX: The current version requires 'coveralls' which we don't have. + ;; Enable this for the next release which uses 'python-pytest'. + '(#:tests? #f)) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "http://matplotlib.org/cycler/") + (synopsis "Composable keyword argument iterator") + (description + "When using @code{matplotlib} and plotting more than one line, it is +common to want to be able to want to be able to cycle over one or more artist +styles; but the plotting logic can quickly become involved. +To address this and enable easy cycling over arbitrary @code{kwargs}, the +@code{Cycler} class was developed.") + (license license:bsd-3))) + +(define-public python2-cycler + (package-with-python2 python-cycler)) + +(define-public python-colorspacious + (package + (name "python-colorspacious") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/njsmith/colorspacious/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version)) + (sha256 + (base32 "1vflh5jm32qb0skza2i8pjacv09w6gq84fqpp2nj77s0rbmzgr4k")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + `(("python-nose" ,python-nose))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "nosetests" "--all-modules" "-v" "colorspacious"))))))) + (home-page "https://github.com/njsmith/colorspacious") + (synopsis "Python library for colorspace conversions") + (description "@code{colorspacious} is a Python library that lets you +convert between colorspaces like sRGB, XYZ, CIEL*a*b*, CIECAM02, CAM02-UCS, etc.") + (license license:expat))) + +(define-public python2-colorspacious + (package-with-python2 python-colorspacious)) + +(define-public python-matplotlib + (package + (name "python-matplotlib") + (version "2.2.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "matplotlib" version)) + (sha256 + (base32 + "1rcc7x9ig3hpchkc4cwdvym3y451w74275fxr455zkfagrsvymbk")))) + (build-system python-build-system) + (propagated-inputs ; the following packages are all needed at run time + `(("python-cycler" ,python-cycler) + ("python-kiwisolver" ,python-kiwisolver) + ("python-pyparsing" ,python-pyparsing) + ("python-pygobject" ,python-pygobject) + ("gobject-introspection" ,gobject-introspection) + ("python-tkinter" ,python "tk") + ("python-dateutil" ,python-dateutil) + ("python-numpy" ,python-numpy) + ("python-pillow" ,python-pillow) + ("python-pytz" ,python-pytz) + ("python-six" ,python-six) + ;; The 'gtk+' package (and 'gdk-pixbuf', 'atk' and 'pango' propagated + ;; from 'gtk+') provides the required 'typelib' files used by + ;; 'gobject-introspection'. The location of these files is set with the + ;; help of the environment variable GI_TYPELIB_PATH. At build time this + ;; is done automatically by a 'native-search-path' procedure. However, + ;; at run-time the user must set this variable as follows: + ;; + ;; export GI_TYPELIB_PATH=~/.guix-profile/lib/girepository-1.0 + ("gtk+" ,gtk+) + ;; From version 1.4.0 'matplotlib' makes use of 'cairocffi' instead of + ;; 'pycairo'. However, 'pygobject' makes use of a 'pycairo' 'context' + ;; object. For this reason we need to import both libraries. + ;; https://pythonhosted.org/cairocffi/cffi_api.html#converting-pycairo + ("python-pycairo" ,python-pycairo) + ;; XXX: qtwebkit cannot be built reliably. + ("python-pyqt" ,python-pyqt-without-qtwebkit) + ("python-cairocffi" ,python-cairocffi))) + (inputs + `(("libpng" ,libpng) + ("imagemagick" ,imagemagick) + ("freetype" ,freetype) + ("cairo" ,cairo) + ("glib" ,glib) + ;; FIXME: Add backends when available. + ;("python-wxpython" ,python-wxpython) + ("tcl" ,tcl) + ("tk" ,tk))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("python-nose" ,python-nose) + ("python-mock" ,python-mock))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'configure-environment + (lambda* (#:key outputs inputs #:allow-other-keys) + (let ((cairo (assoc-ref inputs "cairo")) + (gtk+ (assoc-ref inputs "gtk+"))) + ;; Setting these directories in the 'basedirlist' of 'setup.cfg' + ;; has not effect. + (setenv "LD_LIBRARY_PATH" + (string-append cairo "/lib:" gtk+ "/lib")) + (setenv "HOME" (getcwd)) + (call-with-output-file "setup.cfg" + (lambda (port) + (format port "[directories]~% +basedirlist = ~a,~a~% + [rc_options]~% +backend = TkAgg~%" + (assoc-ref inputs "tcl") + (assoc-ref inputs "tk"))))) + #t))))) + (home-page "http://matplotlib.org") + (synopsis "2D plotting library for Python") + (description + "Matplotlib is a Python 2D plotting library which produces publication +quality figures in a variety of hardcopy formats and interactive environments +across platforms. Matplotlib can be used in Python scripts, the python and +ipython shell, web application servers, and six graphical user interface +toolkits.") + (license license:psfl) + (properties `((python2-variant . ,(delay python2-matplotlib)))))) + +(define-public python2-matplotlib + (let ((matplotlib (package-with-python2 + (strip-python2-variant python-matplotlib)))) + (package (inherit matplotlib) + ;; Make sure to use special packages for Python 2 instead + ;; of those automatically rewritten by package-with-python2. + (propagated-inputs + `(("python2-pycairo" ,python2-pycairo) + ("python2-backports-functools-lru-cache" + ,python2-backports-functools-lru-cache) + ("python2-functools32" ,python2-functools32) + ("python2-pygobject-2" ,python2-pygobject-2) + ("python2-subprocess32" ,python2-subprocess32) + ("python2-tkinter" ,python-2 "tk") + ,@(fold alist-delete (package-propagated-inputs matplotlib) + '("python-pycairo" "python-pygobject" "python-tkinter"))))))) + +(define-public python-matplotlib-documentation + (package + (name "python-matplotlib-documentation") + (version (package-version python-matplotlib)) + (source (package-source python-matplotlib)) + (build-system python-build-system) + (native-inputs + `(("python-matplotlib" ,python-matplotlib) + ("python-colorspacious" ,python-colorspacious) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-gallery" ,python-sphinx-gallery) + ("python-numpydoc" ,python-numpydoc) + ("python-ipython" ,python-ipython) + ("python-mock" ,python-mock) + ("graphviz" ,graphviz) + ("texlive" ,texlive) + ("texinfo" ,texinfo) + ,@(package-native-inputs python-matplotlib))) + (arguments + `(#:tests? #f ; we're only generating documentation + #:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + (chdir "doc") + ;; Produce pdf in 'A4' format. + (substitute* "conf.py" + (("latex_paper_size = 'letter'") "") + ;; latex_paper_size is deprecated -> set paper size using + ;; latex_elements + (("latex_elements\\['pointsize'\\] = '11pt'" match) + ;; insert at a point where latex_elements{} is defined: + (string-append match "\nlatex_elements['papersize'] = 'a4paper'"))) + (invoke "make" "SPHINXBUILD=sphinx-build" "html" "latex" "texinfo"))) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "out") "/share")) + (doc (string-append data "/doc/python-matplotlib-" ,version)) + (info (string-append data "/info")) + (html (string-append doc "/html"))) + (mkdir-p html) + (mkdir-p info) + (copy-recursively "build/html" html) + (symlink (string-append html "/_images") + (string-append info "/matplotlib-figures")) + (with-directory-excursion "build/texinfo" + (substitute* "matplotlib.texi" + (("@image\\{([^,]*)" all file) + (string-append "@image{matplotlib-figures/" file))) + (symlink (string-append html "/_images") + "./matplotlib-figures") + (system* "makeinfo" "--no-split" + "-o" "matplotlib.info" "matplotlib.texi")) + (copy-file "build/texinfo/matplotlib.info" + (string-append info "/matplotlib.info")) + (copy-file "build/latex/Matplotlib.pdf" + (string-append doc "/Matplotlib.pdf"))) + #t))))) + (home-page (package-home-page python-matplotlib)) + (synopsis "Documentation for the python-matplotlib package") + (description (package-description python-matplotlib)) + (license (package-license python-matplotlib)))) + +(define-public python2-matplotlib-documentation + (package-with-python2 python-matplotlib-documentation)) + +(define-public python2-pysnptools + (package + (name "python2-pysnptools") + (version "0.3.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pysnptools" version ".zip")) + (sha256 + (base32 + "1wybggjzz8zw7aav4pjsg2h22xp17a1lghrprza1pxwlm7wf96y2")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) ; only Python 2.7 is supported + (propagated-inputs + `(("python2-numpy" ,python2-numpy) + ("python2-scipy" ,python2-scipy) + ("python2-pandas" ,python2-pandas))) + (native-inputs + `(("python2-cython" ,python2-cython))) + (native-inputs + `(("unzip" ,unzip))) + (home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/") + (synopsis "Library for reading and manipulating genetic data") + (description + "PySnpTools is a library for reading and manipulating genetic data. It +can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of +those files. It can also efficiently manipulate ranges of integers using set +operators such as union, intersection, and difference.") + (license license:asl2.0))) + +(define-public python-scipy + (package + (name "python-scipy") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "scipy" version)) + (sha256 + (base32 + "1lfg686w6vv2m2dfs8v9d0bf2i18z7wz5vgzjnkgmpr4hi0550w7")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-matplotlib" ,python-matplotlib) + ("python-pyparsing" ,python-pyparsing))) + (inputs + `(("lapack" ,lapack) + ("openblas" ,openblas))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest) + ("python-sphinx" ,python-sphinx) + ("python-numpydoc" ,python-numpydoc) + ("gfortran" ,gfortran) + ("perl" ,perl) + ("which" ,which))) + (outputs '("out" "doc")) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-broken-tests + (lambda _ + (substitute* "scipy/sparse/linalg/dsolve/tests/test_linsolve.py" + (("^( +)def test_threads_parallel\\(self\\):" m indent) + (string-append indent + "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" + m))) + (substitute* "scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py" + (("^def test_parallel_threads\\(\\):" m) + (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" + m))) + #t)) + (add-before 'build 'configure-openblas + (lambda* (#:key inputs #:allow-other-keys) + (call-with-output-file "site.cfg" + (lambda (port) + (format port + "[blas] +libraries = openblas +library_dirs = ~a/lib +include_dirs = ~a/include + +# backslash-n to make emacs happy +\n[atlas] +library_dirs = ~a/lib +atlas_libs = openblas +" + (assoc-ref inputs "openblas") + (assoc-ref inputs "openblas") + (assoc-ref inputs "openblas")))) + #t)) + (add-after 'install 'install-doc + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "doc") "/share")) + (doc (string-append data "/doc/" ,name "-" ,version)) + (html (string-append doc "/html")) + (pyver ,(string-append "PYVER=" (version-major+minor + (package-version python)))) + ;; By default it tries to run sphinx-build through the Python + ;; interpreter which won't work with our shell wrapper. + (sphinxbuild "SPHINXBUILD=LANG=C sphinx-build")) + ;; Make installed package available for building the + ;; documentation + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "doc" + ;; Fix generation of images for mathematical expressions. + (substitute* (find-files "source" "conf\\.py") + (("pngmath_use_preview = True") + "pngmath_use_preview = False")) + (mkdir-p html) + (invoke "make" "html" pyver sphinxbuild) + (with-directory-excursion "build/html" + (for-each (lambda (file) + (let* ((dir (dirname file)) + (tgt-dir (string-append html "/" dir))) + (install-file file html))) + (find-files "." ".*"))))) + #t)) + ;; Tests can only be run after the library has been installed and not + ;; within the source directory. + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "/tmp" + (invoke "python" "-c" + "import scipy; scipy.test(verbose=2)"))))))) + (home-page "https://www.scipy.org/") + (synopsis "The Scipy library provides efficient numerical routines") + (description "The SciPy library is one of the core packages that make up +the SciPy stack. It provides many user-friendly and efficient numerical +routines such as routines for numerical integration and optimization.") + (properties `((python2-variant . ,(delay python2-scipy)))) + (license license:bsd-3))) + +(define-public python2-scipy + (package-with-python2 + (strip-python2-variant python-scipy))) + +(define-public python-socksipy-branch + (package + (name "python-socksipy-branch") + (version "1.01") + (source + (origin + (method url-fetch) + (uri (pypi-uri "SocksiPy-branch" version)) + (sha256 + (base32 + "01l41v4g7fy9fzvinmjxy6zcbhgqaif8dhdqm4w90fwcw9h51a8p")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; There are no tests + (home-page "https://code.google.com/archive/p/socksipy-branch/") + (synopsis "Python SOCKS module") + (description + "SocksiPy - A Python SOCKS client module. It provides a +socket-like interface that supports connections to any TCP +service through the use of a SOCKS4, SOCKS5 or HTTP proxy. +The original version was developed by Dan Haim, this is a +branch created by Mario Vilas to address some open issues, +as the original project seems to have been abandoned circa 2007.") + (license license:bsd-3))) + +(define-public python2-socksipy-branch + (package-with-python2 python-socksipy-branch)) + +(define-public python-pycodestyle + (package + (name "python-pycodestyle") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pycodestyle" version)) + (sha256 + (base32 + "0fhy4vnlgpjq4qd1wdnl6pvdw7rah0ypmn8c9mkhz8clsndskz6b")))) + (build-system python-build-system) + (home-page "https://pycodestyle.readthedocs.io/") + (synopsis "Python style guide checker") + (description "@code{pycodestyle} (formerly pep8) is a tool to check +Python code against some of the style conventions in +@url{http://www.python.org/dev/peps/pep-0008/,PEP 8}.") + (license license:expat))) + +(define-public python2-pycodestyle + (package-with-python2 python-pycodestyle)) + +(define-public python-multidict + (package + (name "python-multidict") + (version "4.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "multidict" version)) + (sha256 + (base32 + "1vf5bq8hn5a9rvhr5v4fwbmarfsp35hhr8gs74kqfijy34j2f194")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/aio-libs/multidict/") + (synopsis "Multidict implementation") + (description "Multidict is dict-like collection of key-value pairs +where key might be occurred more than once in the container.") + (license license:asl2.0))) + +(define-public python-orderedmultidict + (package + (name "python-orderedmultidict") + (version "0.7.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "orderedmultidict" version)) + (sha256 + (base32 + "0dls862ibm7qbq4fnvwx0xn1v9hwyzywbff8xjjdr42dd75208yw")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + ;; The package uses nosetest for running the tests. + ;; Adding this initfile allows to run the test suite + ;; without requiring nosetest. + (zero? (system* "touch" "tests/__init__.py"))))))) + (propagated-inputs + `(("python-six" ,python-six))) + (native-inputs + `(("python-pycodestyle" ,python-pycodestyle))) + (home-page "https://github.com/gruns/orderedmultidict") + (synopsis "Python Ordered Multivalue Dictionary - omdict") + (description "This package contains a library for ordered multivalue +dictionaries. A multivalue dictionary is a dictionary that can store +multiple values for the same key. An ordered multivalue dictionary is a +multivalue dictionary that retains the order of insertions and deletions.") + (license license:unlicense))) + +(define-public python2-orderedmultidict + (package-with-python2 python-orderedmultidict)) + +(define-public python-autopep8 + (package + (name "python-autopep8") + (version "1.3.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "autopep8" version)) + (sha256 + (base32 + "192bvhzi4d0claqxgzymvv7k3qnj627742bc8sgxpzjj42pd9112")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pycodestyle" ,python-pycodestyle))) + (home-page "https://github.com/hhatto/autopep8") + (synopsis "Format Python code according to the PEP 8 style guide") + (description + "@code{autopep8} automatically formats Python code to conform to +the PEP 8 style guide. It uses the pycodestyle utility to determine +what parts of the code needs to be formatted. @code{autopep8} is +capable of fixing most of the formatting issues that can be reported +by pycodestyle.") + (license (license:non-copyleft + "https://github.com/hhatto/autopep8/blob/master/LICENSE")))) + +(define-public python2-autopep8 + (package-with-python2 python-autopep8)) + +(define-public python-distutils-extra + (package + (name "python-distutils-extra") + (version "2.38") + (source + (origin + (method url-fetch) + (uri (string-append "https://launchpad.net/python-distutils-extra/trunk/" + version "/+download/python-distutils-extra-" + version ".tar.gz")) + (sha256 + (base32 + "0lx15kcbby9zisx33p2h5hgakgwh2bvh0ibag8z0px4j6ifhs41x")))) + (build-system python-build-system) + (home-page "https://launchpad.net/python-distutils-extra/") + (synopsis "Enhancements to Python's distutils") + (description + "The python-distutils-extra module enables you to easily integrate +gettext support, themed icons, and scrollkeeper-based documentation into +Python's distutils.") + (license license:gpl2))) + +(define-public python2-distutils-extra + (package-with-python2 python-distutils-extra)) + +(define-public python2-elib.intl + (package + (name "python2-elib.intl") + (version "0.0.3") + (source + (origin + ;; This project doesn't tag releases or publish tarballs, so we take + ;; source from a (semi-arbitrary, i.e. latest as of now) git commit. + (method git-fetch) + (uri (git-reference + (url "https://github.com/dieterv/elib.intl.git") + (commit "d09997cfef"))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0y7vzff9xgbnaay7m0va1arl6g68ncwrvbgwl7jqlclsahzzb09d")))) + (build-system python-build-system) + (arguments + ;; incompatible with Python 3 (exception syntax) + `(#:python ,python-2 + #:tests? #f)) + (home-page "https://github.com/dieterv/elib.intl") + (synopsis "Enhanced internationalization for Python") + (description + "The elib.intl module provides enhanced internationalization (I18N) +services for your Python modules and applications.") + (license license:lgpl3+))) + +(define-public python-olefile + (package + (name "python-olefile") + (version "0.45.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/decalage2/olefile/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "18ai19zwagm6nli14k8bii31ipbab2rp7plrvsm6gmfql551a8ai")))) + (build-system python-build-system) + (home-page + "https://www.decalage.info/python/olefileio") + (synopsis "Read and write Microsoft OLE2 files.") + (description + "@code{olefile} can parse, read and write Microsoft OLE2 files (Structured +Storage or Compound Document, Microsoft Office). It is an improved version of +the OleFileIO module from PIL, the Python Image Library.") + (license license:bsd-3))) + +(define-public python2-olefile + (package-with-python2 python-olefile)) + +(define-public python-pillow + (package + (name "python-pillow") + (version "5.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pillow" version)) + (sha256 + (base32 + "17waygkhhzjd75kajlfw9v57mbb41lcpg6cvkdijqd7smm76ccsj")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (inputs + `(("freetype" ,freetype) + ("lcms" ,lcms) + ("zlib" ,zlib) + ("libjpeg" ,libjpeg) + ("openjpeg" ,openjpeg) + ("libtiff" ,libtiff) + ("libwebp" ,libwebp))) + (propagated-inputs + `(("python-olefile" ,python-olefile))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-ldconfig + (lambda _ + (substitute* "setup.py" + (("\\['/sbin/ldconfig', '-p'\\]") "['true']")))) + (delete 'check) ; We must run checks after python-pillow is installed. + (add-after 'install 'check-installed + (lambda* (#:key outputs inputs #:allow-other-keys) + (begin + (setenv "HOME" (getcwd)) + ;; Make installed package available for running the tests. + (add-installed-pythonpath inputs outputs) + (invoke "python" "selftest.py" "--installed") + (invoke "python" "-m" "pytest" "-vv"))))))) + (home-page "https://python-pillow.org") + (synopsis "Fork of the Python Imaging Library") + (description + "The Python Imaging Library adds image processing capabilities to your +Python interpreter. This library provides extensive file format support, an +efficient internal representation, and fairly powerful image processing +capabilities. The core image library is designed for fast access to data +stored in a few basic pixel formats. It should provide a solid foundation for +a general image processing tool.") + (license (license:x11-style + "http://www.pythonware.com/products/pil/license.htm" + "The PIL Software License")))) + +(define-public python2-pillow + (package-with-python2 python-pillow)) + +(define-public python-pycparser + (package + (name "python-pycparser") + (version "2.18") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pycparser" version)) + (sha256 + (base32 + "09mjyw82ibqzl449g7swy8bfxnfpmas0815d2rkdjlcqw81wma4r")))) + (outputs '("out" "doc")) + (build-system python-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (with-directory-excursion "tests" + (zero? (system* "python" "all_tests.py"))))) + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "doc") "/share")) + (doc (string-append data "/doc/" ,name "-" ,version)) + (examples (string-append doc "/examples"))) + (mkdir-p examples) + (for-each (lambda (file) + (copy-file (string-append "." file) + (string-append doc file))) + '("/README.rst" "/CHANGES" "/LICENSE")) + (copy-recursively "examples" examples))))))) + (home-page "https://github.com/eliben/pycparser") + (synopsis "C parser in Python") + (description + "Pycparser is a complete parser of the C language, written in pure Python +using the PLY parsing library. It parses C code into an AST and can serve as +a front-end for C compilers or analysis tools.") + (license license:bsd-3))) + +(define-public python2-pycparser + (package-with-python2 python-pycparser)) + +(define-public python-pywavelets + (package + (name "python-pywavelets") + (version "1.0.1") + (home-page "https://github.com/PyWavelets/pywt") + (source (origin + (method url-fetch) + (uri (pypi-uri "PyWavelets" version)) + (sha256 + (base32 + "1p3qv2v66ghnqrb1f98wyyhp9dz71jwcd6kfpsax65sfdpiyqp1w")))) + (build-system python-build-system) + (arguments + '(#:modules ((ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26) + (guix build utils) + (guix build python-build-system)) + #:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (let ((cwd (getcwd)) + (libdir (find (cut string-prefix? "lib." <>) + (scandir "build")))) + (with-directory-excursion (string-append cwd "/build/" libdir) + (invoke "nosetests" "-v" ".")))))))) + (native-inputs + `(("python-matplotlib" ,python-matplotlib) ;for tests + ("python-nose" ,python-nose))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (synopsis "Wavelet transforms in Python") + (description + "PyWavelets is a library for wavelet transforms in Python. Wavelets are +mathematical basis functions that are localized in both time and frequency. +Wavelet transforms are time-frequency transforms employing wavelets. They are +similar to Fourier transforms, the difference being that Fourier transforms are +localized only in frequency instead of in time and frequency.") + (license license:expat))) + +(define-public python2-pywavelets + (package-with-python2 python-pywavelets)) + +(define-public python-xcffib + (package + (name "python-xcffib") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xcffib" version)) + (sha256 + (base32 + "04k91yxyb3pgc5lvxmivh8w71yjrap2g57yk3s73x4rm4nvjq51n")))) + (build-system python-build-system) + (inputs + `(("libxcb" ,libxcb))) + (propagated-inputs + `(("python-cffi" ,python-cffi) ; used at run time + ("python-six" ,python-six))) + (arguments + `(;; FIXME: Tests need more work. See ".travis.yml" in the repository. + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-libxcb-path + (lambda* (#:key inputs #:allow-other-keys) + (let ((libxcb (assoc-ref inputs "libxcb"))) + (substitute* '("xcffib/__init__.py") + (("^soname = \"") (string-append "soname = \"" libxcb "/lib/"))) + #t))) + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let ((doc (string-append (assoc-ref outputs "out") "/share" + "/doc/" ,name "-" ,version))) + (mkdir-p doc) + (copy-file "README.md" + (string-append doc "/README.md")) + #t)))))) + (home-page "https://github.com/tych0/xcffib") + (synopsis "XCB Python bindings") + (description + "Xcffib is a replacement for xpyb, an XCB Python bindings. It adds +support for Python 3 and PyPy. It is based on cffi.") + (license license:expat))) + +(define-public python2-xcffib + (package-with-python2 python-xcffib)) + +(define-public python-cairocffi + (package + (name "python-cairocffi") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cairocffi" version)) + (sha256 + (base32 + "0dq3k4zhqd8cwsf3nyjqvjqm8wkvrjn1wjf44rl3v0h8kqx6qf0m")) + (patches (search-patches "python-cairocffi-dlopen-path.patch")))) + (build-system python-build-system) + (outputs '("out" "doc")) + (inputs + `(("glib" ,glib) + ("gtk+" ,gtk+) + ("gdk-pixbuf" ,gdk-pixbuf) + ("cairo" ,cairo) + ("pango" ,pango))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner) + ("python-sphinx" ,python-sphinx) + ("python-docutils" ,python-docutils))) + (propagated-inputs + `(("python-xcffib" ,python-xcffib))) ; used at run time + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-paths + (lambda* (#:key inputs outputs #:allow-other-keys) + (substitute* (find-files "." "\\.py$") + (("dlopen\\(ffi, 'cairo'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "cairo") + "/lib/libcairo.so.2'")) + (("dlopen\\(ffi, 'gdk-3'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "gtk+") + "/lib/libgtk-3.so.0'")) + (("dlopen\\(ffi, 'gdk_pixbuf-2.0'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "gdk-pixbuf") + "/lib/libgdk_pixbuf-2.0.so.0'")) + (("dlopen\\(ffi, 'glib-2.0'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "glib") + "/lib/libglib-2.0.so.0'")) + (("dlopen\\(ffi, 'gobject-2.0'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "glib") + "/lib/libgobject-2.0.so.0'")) + (("dlopen\\(ffi, 'pangocairo-1.0'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "pango") + "/lib/libpangocairo-1.0.so.0'")) + (("dlopen\\(ffi, 'pango-1.0'") + (string-append "dlopen(ffi, '" (assoc-ref inputs "pango") + "/lib/libpango-1.0.so.0'"))) + #t)) + (add-after 'install 'install-doc + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "doc") "/share")) + (doc (string-append data "/doc/" ,name "-" ,version)) + (html (string-append doc "/html"))) + (setenv "LD_LIBRARY_PATH" + (string-append (assoc-ref inputs "cairo") "/lib" ":" + (assoc-ref inputs "gdk-pixbuf") "/lib")) + (setenv "LANG" "en_US.UTF-8") + (mkdir-p html) + (for-each (lambda (file) + (copy-file (string-append "." file) + (string-append doc file))) + '("/README.rst" "/CHANGES" "/LICENSE")) + (system* "python" "setup.py" "build_sphinx") + (copy-recursively "docs/_build/html" html) + #t)))))) + (home-page "https://github.com/Kozea/cairocffi") + (synopsis "Python bindings and object-oriented API for Cairo") + (description + "Cairocffi is a CFFI-based drop-in replacement for Pycairo, a set of +Python bindings and object-oriented API for cairo. Cairo is a 2D vector +graphics library with support for multiple backends including image buffers, +PNG, PostScript, PDF, and SVG file output.") + (license license:bsd-3))) + +(define-public python2-cairocffi + (package-with-python2 python-cairocffi)) + +(define-public python-decorator + (package + (name "python-decorator") + (version "4.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "decorator" version)) + (sha256 + (base32 "0308djallnh00v112y5b7nadl657ysmkp6vc8xn51d6yzc9zm7n3")))) + (build-system python-build-system) + (home-page "https://pypi.python.org/pypi/decorator/") + (synopsis "Python module to simplify usage of decorators") + (description + "The aim of the decorator module is to simplify the usage of decorators +for the average programmer, and to popularize decorators usage giving examples +of useful decorators, such as memoize, tracing, redirecting_stdout, locked, +etc. The core of this module is a decorator factory.") + (license license:expat))) + +(define-public python2-decorator + (package-with-python2 python-decorator)) + +(define-public python-drmaa + (package + (name "python-drmaa") + (version "0.7.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "drmaa" version)) + (sha256 + (base32 "0xzqriqyvk5b8hszbavsyxd29wm3sxirm8zvvdm73rs2iq7w4hkx")))) + (build-system python-build-system) + ;; The test suite requires libdrmaa which is provided by the cluster + ;; environment. At runtime the environment variable DRMAA_LIBRARY_PATH + ;; should be set to the path of the libdrmaa library. + (arguments '(#:tests? #f)) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://pypi.python.org/pypi/drmaa") + (synopsis "Python bindings for the DRMAA library") + (description + "A Python package for Distributed Resource Management (DRM) job +submission and control. This package is an implementation of the DRMAA 1.0 +Python language binding specification.") + (license license:bsd-3))) + +(define-public python2-drmaa + (package-with-python2 python-drmaa)) + +(define-public python-grako + (package + (name "python-grako") + (version "3.99.9") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "grako" version ".zip")) + (sha256 + (base32 + "0r63i68wcnv63rfjkasq1ah81frz61a6mzbcnaxhrkdpx84p7hzw")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; Test file 'grako.ebnf' is missing from archive. + (native-inputs + `(("unzip" ,unzip) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://bitbucket.org/neogeny/grako") + (synopsis "EBNF parser generator") + (description + "Grako takes a grammar in a variation of EBNF as input, and outputs a +memoizing PEG/Packrat parser in Python.") + (license license:bsd-3))) + +(define-public python2-grako + (package-with-python2 python-grako)) + +(define-public python-gridmap + (package + (name "python-gridmap") + (version "0.13.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/pygridtools/gridmap/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1gzjg2k6f14i1msm2b0ax8d9ds1hvk6qd5nlaivg8m4cxqp4cp1x")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; FIXME: Requires python-cherrypy. + (propagated-inputs + `(("python-psutil" ,python-psutil) + ("python-drmaa" ,python-drmaa) + ("python-pyzmq" ,python-pyzmq))) + (home-page "https://github.com/pygridtools/gridmap") + (synopsis "Create jobs on a cluster directly from Python") + (description + "Gridmap is a Python package to allow you to easily create jobs on the +cluster directly from Python. You can directly map Python functions onto the +cluster without needing to write any wrapper code yourself.") + (license license:gpl3+))) + +(define-public python2-gridmap + (package-with-python2 python-gridmap)) + +(define-public python-honcho + (package + (name "python-honcho") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/nickstenning/honcho/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0zizn61n5z5hq421hkypk9pw8s6fpxw30f4hsg7k4ivwzy3gjw9j")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-mock" ,python-mock) + ("python-tox" ,python-tox) + ("which" ,which))) ;for tests + (propagated-inputs + `(("python-jinja2" ,python-jinja2))) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'check) + (add-after 'install 'check + (lambda* (#:key outputs inputs #:allow-other-keys) + ;; fix honcho path in testsuite + (substitute* "tests/conftest.py" + (("'honcho'") (string-append "'" (assoc-ref outputs "out") + "/bin/honcho" "'"))) + ;; It's easier to run tests after install. + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) + (zero? (system* "py.test" "-v"))))))) + (home-page "https://github.com/nickstenning/honcho") + (synopsis "Manage Procfile-based applications") + (description + "A Procfile is a file which describes how to run an application +consisting of serveral processes. honcho starts all listed processes. +The output of all running processes is collected by honcho and +displayed.") + (license license:expat))) + +(define-public python2-honcho + (package-with-python2 python-honcho)) + +(define-public python-pexpect + (package + (name "python-pexpect") + (version "4.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pexpect" version)) + (sha256 + (base32 "1fla85g47iaxxpjhp9vkxdnv4pgc7rplfy6ja491smrrk0jqi3ia")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'prepare-tests + (lambda _ + (substitute* (find-files "tests") + (("/bin/ls") (which "ls")) + (("/bin/echo") (which "echo")) + (("/bin/which") (which "which")) + ;; Many tests try to use the /bin directory which + ;; is not present in the build environment. + ;; Use one that's non-empty and unlikely to change. + (("/bin'") "/dev'")) + ;; XXX: Socket connection test gets "Connection reset by peer". + ;; Why does it not work? Delete for now. + (delete-file "tests/test_socket.py") + #t)) + (replace 'check (lambda _ (invoke "nosetests" "-v")))))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-pytest" ,python-pytest) + ("man-db" ,man-db) + ("which" ,which) + ("bash-full" ,bash))) ;full Bash for 'test_replwrap.py' + (propagated-inputs + `(("python-ptyprocess" ,python-ptyprocess))) + (home-page "http://pexpect.readthedocs.org/") + (synopsis "Controlling interactive console applications") + (description + "Pexpect is a pure Python module for spawning child applications; +controlling them; and responding to expected patterns in their output. +Pexpect works like Don Libes’ Expect. Pexpect allows your script to spawn a +child application and control it as if a human were typing commands.") + (license license:isc))) + +(define-public python2-pexpect + (package-with-python2 python-pexpect)) + +(define-public python-setuptools-scm + (package + (name "python-setuptools-scm") + (version "3.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "setuptools_scm" version)) + (sha256 + (base32 + "0h4bglwfz8b9prqljv8z3w9rgydfyxzaj05bm1y6zs5m6shz548i")))) + (build-system python-build-system) + (home-page "https://github.com/pypa/setuptools_scm/") + (synopsis "Manage Python package versions in SCM metadata") + (description + "Setuptools_scm handles managing your Python package versions in +@dfn{software configuration management} (SCM) metadata instead of declaring +them as the version argument or in a SCM managed file.") + (license license:expat))) + +(define-public python2-setuptools-scm + (package-with-python2 python-setuptools-scm)) + +(define-public python-pathpy + (package + (name "python-pathpy") + (version "11.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "path.py" version)) + (sha256 + (base32 "07x15v8c7ry9bvycw294c9yq6ky9v2b0dalvgi6rn38ilh69vsz7")))) + ;; (outputs '("out" "doc")) + (build-system python-build-system) + (propagated-inputs + `(("python-appdirs" ,python-appdirs))) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm) + ("python-sphinx" ,python-sphinx) + ("python-rst.linker" ,python-rst.linker) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (arguments + ;; FIXME: Documentation and tests require "jaraco.packaging". + `(#:tests? #f)) + ;; #:phases + ;; (modify-phases %standard-phases + ;; (add-after 'build 'build-doc + ;; (lambda _ + ;; (setenv "LANG" "en_US.UTF-8") + ;; (zero? (system* "python" "setup.py" "build_sphinx")))) + ;; (add-after 'install 'install-doc + ;; (lambda* (#:key outputs #:allow-other-keys) + ;; (let* ((data (string-append (assoc-ref outputs "doc") "/share")) + ;; (doc (string-append data "/doc/" ,name "-" ,version)) + ;; (html (string-append doc "/html"))) + ;; (mkdir-p html) + ;; (for-each (lambda (file) + ;; (copy-file file (string-append doc "/" file))) + ;; '("README.rst" "CHANGES.rst")) + ;; (copy-recursively "build/sphinx/html" html))))))) + (home-page "https://github.com/jaraco/path.py") + (synopsis "Python module wrapper for built-in os.path") + (description + "@code{path.py} implements path objects as first-class entities, allowing +common operations on files to be invoked on those path objects directly.") + (license license:expat))) + +(define-public python2-pathpy + (package-with-python2 python-pathpy)) + +(define-public python-simplegeneric + (package + (name "python-simplegeneric") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/s/" + "simplegeneric/simplegeneric-" version ".zip")) + (sha256 + (base32 "0wwi1c6md4vkbcsfsf8dklf3vr4mcdj4mpxkanwgb6jb1432x5yw")))) + (build-system python-build-system) + (native-inputs + `(("unzip" ,unzip))) + (home-page "http://cheeseshop.python.org/pypi/simplegeneric") + (synopsis "Python module for simple generic functions") + (description + "The simplegeneric module lets you define simple single-dispatch generic +functions, akin to Python’s built-in generic functions like @code{len()}, +@code{iter()} and so on. However, instead of using specially-named methods, +these generic functions use simple lookup tables, akin to those used by +e.g. @code{pickle.dump()} and other generic functions found in the Python +standard library.") + (license license:zpl2.1))) + +(define-public python2-simplegeneric + (package-with-python2 python-simplegeneric)) + +(define-public python-ipython-genutils + ;; TODO: This package is retired, check if can be removed, see description. + (package + (name "python-ipython-genutils") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/i/" + "ipython_genutils/ipython_genutils-" + version ".tar.gz")) + (sha256 + (base32 "19l2pp1c64ansr89l3cqh19jdi2ixhssdzx0vz4n6r52a6i281is")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ; no tests + (home-page "https://ipython.org") + (synopsis "Vestigial utilities from IPython") + (description + "This package provides retired utilities from IPython. No packages +outside IPython/Jupyter should depend on it. + +This package shouldn't exist. It contains some common utilities shared by +Jupyter and IPython projects during The Big Split. As soon as possible, those +packages will remove their dependency on this, and this package will go +away.") + (license license:bsd-3))) + +(define-public python2-ipython-genutils + (package-with-python2 python-ipython-genutils)) + +(define-public python-traitlets + (package + (name "python-traitlets") + (version "4.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "traitlets" version)) + (sha256 + (base32 + "0dbq7sx26xqz5ixs711k5nc88p8a0nqyz6162pwks5dpcz9d4jww")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check (lambda _ (invoke "pytest" "-vv" "traitlets")))))) + (propagated-inputs + `(("python-ipython-genutils" ,python-ipython-genutils) + ("python-decorator" ,python-decorator))) ;not needed for >4.3.2 + (native-inputs + `(("python-pytest" ,python-pytest))) + (properties `((python2-variant . ,(delay python2-traitlets)))) + (home-page "https://ipython.org") + (synopsis "Configuration system for Python applications") + (description + "Traitlets is a framework that lets Python classes have attributes with +type checking, dynamically calculated default values, and ‘on change’ +callbacks. The package also includes a mechanism to use traitlets for +configuration, loading values from files or from command line arguments. This +is a distinct layer on top of traitlets, so you can use traitlets in your code +without using the configuration machinery.") + (license license:bsd-3))) + +(define-public python2-traitlets + (let ((traitlets (package-with-python2 (strip-python2-variant python-traitlets)))) + (package + (inherit traitlets) + (propagated-inputs + `(("python2-enum34" ,python2-enum34) + ,@(package-propagated-inputs traitlets)))))) + +(define-public python-jupyter-core + (package + (name "python-jupyter-core") + (version "4.4.0") + (source + (origin + (method url-fetch) + (uri (string-append (pypi-uri "jupyter_core" version))) + (sha256 + (base32 + "1dy083rarba8prn9f9srxq3c7n7vyql02ycrqq306c40lr57aw5s")))) + (build-system python-build-system) + ;; FIXME: not sure how to run the tests + (arguments `(#:tests? #f)) + (propagated-inputs + `(("python-traitlets" ,python-traitlets))) + (home-page "http://jupyter.org/") + (synopsis "Jupyter base package") + (description + "Jupyter core is the base package on which Jupyter projects rely.") + (license license:bsd-3))) + +(define-public python2-jupyter-core + (package-with-python2 python-jupyter-core)) + +(define-public python-jupyter-client + (package + (name "python-jupyter-client") + (version "5.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyter_client" version)) + (sha256 + (base32 + "0l9mh7ccrpl3lppym3dnky8n1nk7xarzzdcxf4q2s7aw203cpydm")))) + (build-system python-build-system) + ;; Tests fail because of missing native python kernel which I assume is + ;; provided by the ipython package, which we cannot use because it would + ;; cause a dependency cycle. + (arguments `(#:tests? #f)) + (propagated-inputs + `(("python-pyzmq" ,python-pyzmq) + ("python-traitlets" ,python-traitlets) + ("python-jupyter-core" ,python-jupyter-core))) + (home-page "http://jupyter.org/") + (synopsis "Jupyter protocol implementation and client libraries") + (description + "The @code{jupyter_client} package contains the reference implementation +of the Jupyter protocol. It also provides client and kernel management APIs +for working with kernels, and the @code{jupyter kernelspec} entrypoint for +installing @code{kernelspec}s for use with Jupyter frontends.") + (license license:bsd-3))) + +(define-public python2-jupyter-client + (package-with-python2 python-jupyter-client)) + +(define-public python-ipykernel + (package + (name "python-ipykernel") + (version "5.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ipykernel" version)) + (sha256 + (base32 "0br95qhrd5k65g10djngiy27hs0642301hlf2q142i8djabvzh0g")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (setenv "HOME" "/tmp") + (invoke "pytest" "-v") + #t))))) + (propagated-inputs + `(("python-ipython" ,python-ipython) + ;; imported at runtime during connect + ("python-jupyter-client" ,python-jupyter-client))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-nose" ,python-nose))) + (home-page "https://ipython.org") + (synopsis "IPython Kernel for Jupyter") + (description + "This package provides the IPython kernel for Jupyter.") + (license license:bsd-3))) + +(define-public python2-ipykernel + (package-with-python2 python-ipykernel)) + +(define-public python-send2trash + (package + (name "python-send2trash") + (version "1.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "send2trash" version)) + (sha256 + (base32 + "1ci8vcwjmjlp11ljj1ckrfmml9fkq1mclx2gr53y4zvhgp01q030")))) + (build-system python-build-system) + (home-page "https://github.com/hsoft/send2trash") + (synopsis "Send files to trash") + (description + "This package provides a cross-platform mechanism to send files to the +trash.") + (license license:bsd-3))) + +(define-public python2-send2trash + (package-with-python2 python-send2trash)) + +;; This is the latest release of the LTS version of ipython with support for +;; Python 2.7 and Python 3.x. Later non-LTS versions starting from 6.0 have +;; dropped support for Python 2.7. We may want to rename this package. +(define-public python-ipython + (package + (name "python-ipython") + (version "5.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ipython" version ".tar.gz")) + (sha256 + (base32 "01l93i4hspf0lvhmycvc8j378bslm9rw30mwfspsl6v1ayc69b2b")))) + (build-system python-build-system) + (outputs '("out" "doc")) + (propagated-inputs + `(("python-pyzmq" ,python-pyzmq) + ("python-prompt-toolkit" ,python-prompt-toolkit-1) + ("python-terminado" ,python-terminado) + ("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-numpydoc" ,python-numpydoc) + ("python-jinja2" ,python-jinja2) + ("python-mistune" ,python-mistune) + ("python-pexpect" ,python-pexpect) + ("python-pickleshare" ,python-pickleshare) + ("python-simplegeneric" ,python-simplegeneric) + ("python-jsonschema" ,python-jsonschema) + ("python-traitlets" ,python-traitlets) + ("python-nbformat" ,python-nbformat) + ("python-pygments" ,python-pygments))) + (inputs + `(("readline" ,readline) + ("which" ,which))) + (native-inputs + `(("graphviz" ,graphviz) + ("pkg-config" ,pkg-config) + ("python-requests" ,python-requests) ;; for tests + ("python-testpath" ,python-testpath) + ("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-shpinx-rtd-theme" ,python-sphinx-rtd-theme) + ;; FIXME: It's possible that a smaller union would work just as well. + ("texlive" ,(texlive-union (list texlive-fonts-amsfonts + texlive-fonts-ec + texlive-generic-ifxetex + texlive-generic-pdftex + texlive-latex-amsfonts + texlive-latex-capt-of + texlive-latex-cmap + texlive-latex-environ + texlive-latex-eqparbox + texlive-latex-etoolbox + texlive-latex-expdlist + texlive-latex-fancyhdr + texlive-latex-fancyvrb + texlive-latex-fncychap + texlive-latex-float + texlive-latex-framed + texlive-latex-geometry + texlive-latex-graphics + texlive-latex-hyperref + texlive-latex-mdwtools + texlive-latex-multirow + texlive-latex-oberdiek + texlive-latex-parskip + texlive-latex-preview + texlive-latex-tabulary + texlive-latex-threeparttable + texlive-latex-titlesec + texlive-latex-trimspaces + texlive-latex-ucs + texlive-latex-upquote + texlive-latex-url + texlive-latex-varwidth + texlive-latex-wrapfig))) + ("texinfo" ,texinfo))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'install 'install-doc + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "doc") "/share")) + (doc (string-append data "/doc/" ,name "-" ,version)) + (html (string-append doc "/html")) + (man1 (string-append data "/man/man1")) + (info (string-append data "/info")) + (examples (string-append doc "/examples")) + (python-arg (string-append "PYTHON=" (which "python")))) + (setenv "LANG" "en_US.utf8") + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "docs" + ;; FIXME: pdf fails to build + ;;(system* "make" "pdf" "PAPER=a4") + (system* "make" python-arg "html") + (system* "make" python-arg "info")) + (copy-recursively "docs/man" man1) + (copy-recursively "examples" examples) + (copy-recursively "docs/build/html" html) + ;; (copy-file "docs/build/latex/ipython.pdf" + ;; (string-append doc "/ipython.pdf")) + (mkdir-p info) + (copy-file "docs/build/texinfo/ipython.info" + (string-append info "/ipython.info")) + (copy-file "COPYING.rst" (string-append doc "/COPYING.rst"))) + #t)) + ;; Tests can only be run after the library has been installed and not + ;; within the source directory. + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (if tests? + (begin + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) + (setenv "HOME" "/tmp/") ;; required by a test + ;; We only test the core because one of the other tests + ;; tries to import ipykernel. + (invoke "python" "IPython/testing/iptest.py" + "-v" "IPython/core/tests")) + #t))) + (add-before 'check 'fix-tests + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "./IPython/utils/_process_posix.py" + (("/usr/bin/env', 'which") (which "which"))) + (substitute* "./IPython/core/tests/test_inputtransformer.py" + (("#!/usr/bin/env python") + (string-append "#!" (which "python")))) + ;; Disable 1 failing test + (substitute* "./IPython/core/tests/test_magic.py" + (("def test_dirops\\(\\):" all) + (string-append "@dec.skipif(True)\n" all))) + ;; This test introduces a circular dependency on ipykernel + ;; (which depends on ipython). + (delete-file "IPython/core/tests/test_display.py") + ;; These tests throw errors for unknown reasons. + (delete-file "IPython/extensions/tests/test_storemagic.py") + (delete-file "IPython/core/tests/test_displayhook.py") + (delete-file "IPython/core/tests/test_interactiveshell.py") + (delete-file "IPython/core/tests/test_pylabtools.py") + (delete-file "IPython/core/tests/test_paths.py") + #t))))) + (home-page "https://ipython.org") + (synopsis "IPython is a tool for interactive computing in Python") + (description + "IPython provides a rich architecture for interactive computing with: +Powerful interactive shells, a browser-based notebook, support for interactive +data visualization, embeddable interpreters and tools for parallel +computing.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-ipython)))))) + +(define-public python2-ipython + (let ((ipython (package-with-python2 (strip-python2-variant python-ipython)))) + (package + (inherit ipython) + ;; FIXME: add pyreadline once available. + (propagated-inputs + `(("python2-backports-shutil-get-terminal-size" + ,python2-backports-shutil-get-terminal-size) + ("python2-pathlib2" ,python2-pathlib2) + ,@(package-propagated-inputs ipython))) + (native-inputs + `(("python2-mock" ,python2-mock) + ,@(package-native-inputs ipython)))))) + +(define-public python-urwid + (package + (name "python-urwid") + (version "2.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "urwid" version)) + (sha256 + (base32 + "1g6cpicybvbananpjikmjk8npmjk4xvak1wjzji62wc600wkwkb4")))) + (build-system python-build-system) + (home-page "http://urwid.org") + (synopsis "Console user interface library for Python") + (description + "Urwid is a curses-based UI/widget library for Python. It includes many +features useful for text console applications.") + (license license:lgpl2.1+))) + +(define-public python2-urwid + (package-with-python2 python-urwid)) + +(define-public python-urwidtrees + (package + (name "python-urwidtrees") + (version "1.0.2") + (source + (origin + (method url-fetch) + ;; package author intends on distributing via github rather than pypi: + ;; https://github.com/pazz/alot/issues/877#issuecomment-230173331 + (uri (string-append "https://github.com/pazz/urwidtrees/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0d30lyd3s2a97rhqfax5w9ssqds2z6aydqx3c6j2c2lk3cb4ngvh")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; no tests + (propagated-inputs `(("python-urwid" ,python-urwid))) + (home-page "https://github.com/pazz/urwidtrees") + (synopsis "Tree widgets for urwid") + (description "Urwidtrees is a Widget Container API for the @code{urwid} +toolkit. Use it to build trees of widgets.") + (license license:gpl3+))) + +(define-public python2-urwidtrees + (package-with-python2 python-urwidtrees)) + +(define-public python-ua-parser + (package + (name "python-ua-parser") + (version "0.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ua-parser" version)) + (sha256 + (base32 + "1jwdf58rhchjzzrad405pviv0iq24xa2xmmmdgcm2c8s6b4wzfwp")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;no test suite in release + (native-inputs + `(("python-pyyaml" ,python-pyyaml))) + (home-page "https://github.com/ua-parser/uap-python") + (synopsis "User agent parser") + (description + "@code{ua-parser} is a Python port of Browserscope's user agent parser.") + (license license:asl2.0))) + +(define-public python2-ua-parser + (package-with-python2 python-ua-parser)) + +(define-public python-user-agents + (package + (name "python-user-agents") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "user-agents" version)) + (sha256 + (base32 + "0fc00cd3j8dahq1zzn8pkgfgd7lq37bp2scmdma2n1c049vicgb4")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;missing devices.json test file in release + (propagated-inputs + `(("python-ua-parser" ,python-ua-parser))) + (home-page "https://github.com/selwin/python-user-agents") + (synopsis "User Agent strings parsing library") + (description + "A library to identify devices (phones, tablets) and their capabilities by +parsing (browser/HTTP) user agent strings.") + (license license:expat))) + +(define-public python2-user-agents + (package-with-python2 python-user-agents)) + +(define-public python-dbus + (package + (name "python-dbus") + (version "1.2.8") + (source + (origin + (method url-fetch) + (uri (string-append "https://dbus.freedesktop.org/releases/dbus-python/" + "dbus-python-" version ".tar.gz")) + (sha256 + (base32 + "0vvvjmiwnc9cjlks3gcdk43ap7llhlpz7cm1wbw0nc2yfsxjpwdb")))) + (build-system gnu-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before + 'check 'pre-check + (lambda _ + ;; XXX: For the missing '/etc/machine-id'. + (substitute* "test/run-test.sh" + (("DBUS_FATAL_WARNINGS=1") + "DBUS_FATAL_WARNINGS=0")) + #t))))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("python" ,python-wrapper) + ("dbus-glib" ,dbus-glib))) + (synopsis "Python bindings for D-bus") + (description "python-dbus provides bindings for libdbus, the reference +implementation of D-Bus.") + (home-page "https://www.freedesktop.org/wiki/Software/DBusBindings/") + (license license:expat))) + +(define-public python2-dbus + (package (inherit python-dbus) + (name "python2-dbus") + (inputs `(("python" ,python-2) + ,@(alist-delete "python" + (package-inputs python-dbus) + equal?))) + ;; FIXME: on Python 2, the test_utf8 fails with: + ;; "ValueError: unichr() arg not in range(0x10000) (narrow Python build)" + (arguments `(#:tests? #f)))) + +(define-public python-lxml + (package + (name "python-lxml") + (version "4.2.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "lxml" version)) + (sha256 + (base32 + "0zw0y9hs0nflxhl9cs6ipwwh53szi3w2x06wl0k9cylyqac0cwin")))) + (build-system python-build-system) + (inputs + `(("libxml2" ,libxml2) + ("libxslt" ,libxslt))) + (home-page "http://lxml.de/") + (synopsis + "Python XML processing library") + (description + "The lxml XML toolkit is a Pythonic binding for the C libraries +libxml2 and libxslt.") + (license license:bsd-3))) ; and a few more, see LICENSES.txt + +(define-public python2-lxml + (package-with-python2 python-lxml)) + +;; beautifulsoup4 has a totally different namespace than 3.x, +;; and pypi seems to put it under its own name, so I guess we should too +(define-public python-beautifulsoup4 + (package + (name "python-beautifulsoup4") + (version "4.6.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "beautifulsoup4" version)) + (sha256 + (base32 + "041dhalzjciw6qyzzq7a2k4h1yvyk76xigp35hv5ibnn448ydy4h")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; The Python 2 source is the definitive source of beautifulsoup4. We + ;; must use this conversion script when building with Python 3. The + ;; conversion script also runs the tests. + ;; For more information, see the file 'convert-py3k' in the source + ;; distribution. + (replace 'check + (lambda _ (zero? (system* "./convert-py3k"))))))) + (home-page + "https://www.crummy.com/software/BeautifulSoup/bs4/") + (synopsis + "Python screen-scraping library") + (description + "Beautiful Soup is a Python library designed for rapidly setting up +screen-scraping projects. It offers Pythonic idioms for navigating, +searching, and modifying a parse tree, providing a toolkit for +dissecting a document and extracting what you need. It automatically +converts incoming documents to Unicode and outgoing documents to UTF-8.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-beautifulsoup4)))))) + +(define-public python2-beautifulsoup4 + (package + (inherit (package-with-python2 + (strip-python2-variant python-beautifulsoup4))) + (arguments `(#:python ,python-2)))) + +(define-public python-netifaces + (package + (name "python-netifaces") + (version "0.10.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "netifaces" version)) + (sha256 + (base32 + "1gccklrcplbbqh81g1mdgpa5y8na7kkf29cq2ka3f5a2fp5hyndx")))) + (build-system python-build-system) + (home-page "https://github.com/al45tair/netifaces") + (synopsis + "Python module for portable network interface information") + (description + "Netifaces is a Python module providing information on network +interfaces in an easy and portable manner.") + (license license:expat))) + +(define-public python2-netifaces + (package-with-python2 python-netifaces)) + +(define-public python-networkx + (package + (name "python-networkx") + (version "2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "networkx" version ".zip")) + (sha256 + (base32 "12swxb15299v9vqjsq4z8rgh5sdhvpx497xwnhpnb0gynrx6zra5")))) + (build-system python-build-system) + ;; python-decorator is needed at runtime. + (propagated-inputs + `(("python-decorator" ,python-decorator))) + (native-inputs + `(("python-nose" ,python-nose) + ("unzip" ,unzip))) + (home-page "https://networkx.github.io/") + (synopsis "Python module for creating and manipulating graphs and networks") + (description + "NetworkX is a Python package for the creation, manipulation, and study +of the structure, dynamics, and functions of complex networks.") + (license license:bsd-3))) + +(define-public python2-networkx + (package-with-python2 python-networkx)) + +(define-public python-datrie + (package + (name "python-datrie") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "datrie" version)) + (sha256 + (base32 + "08r0if7dry2q7p34gf7ffyrlnf4bdvnprxgydlfxgfnvq8f3f4bs")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-before 'build 'cythonize + (lambda _ + ;; Regenerate Cython classes to solve ABI issues with Python + ;; 3.7.0. See <https://github.com/pytries/datrie/issues/52>. + (invoke "cython" "src/datrie.pyx" "src/cdatrie.pxd" + "src/stdio_ext.pxd" "-a")))))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-hypothesis" ,python-hypothesis) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/kmike/datrie") + (synopsis "Fast, efficiently stored trie for Python") + (description + "This package provides a fast, efficiently stored trie implementation for +Python.") + (license license:lgpl2.1+))) + +(define-public snakemake + (package + (name "snakemake") + (version "5.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "snakemake" version)) + (sha256 + (base32 "0gj0xxgiq3mp9qyyrbfzldiaq1giliqw0in64nqiz7vx49myqj7z")))) + (build-system python-build-system) + (arguments + ;; TODO: Package missing test dependencies. + '(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable PYTHONPATH set, cluster execution will fail. We fix + ;; this by calling the snakemake wrapper instead. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "snakemake/executors.py" + (("\\{sys.executable\\} -m snakemake") + (string-append (assoc-ref outputs "out") + "/bin/snakemake"))) + #t))))) + (propagated-inputs + `(("python-gitpython" ,python-gitpython) + ("python-wrapt" ,python-wrapt) + ("python-requests" ,python-requests) + ("python-appdirs" ,python-appdirs) + ("python-configargparse" ,python-configargparse) + ("python-datrie" ,python-datrie) + ("python-docutils" ,python-docutils) + ("python-jinja2" ,python-jinja2) + ("python-jsonschema" ,python-jsonschema) + ("python-networkx" ,python-networkx) + ("python-pyyaml" ,python-pyyaml) + ("python-ratelimiter" ,python-ratelimiter))) + (home-page "https://snakemake.readthedocs.io") + (synopsis "Python-based execution environment for make-like workflows") + (description + "Snakemake aims to reduce the complexity of creating workflows by +providing a clean and modern domain specific specification language (DSL) in +Python style, together with a fast and comfortable execution environment.") + (license license:expat))) + +;; This is currently needed for the pigx-* packages. +(define-public snakemake-4 + (package (inherit snakemake) + (version "4.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "snakemake" version)) + (sha256 + (base32 "0g0paia4z7w3srnqdmavq3hrb2x7qnpf81jx50njl0p7y4y0j8jv")))) + (propagated-inputs + `(("python-wrapt" ,python-wrapt) + ("python-requests" ,python-requests) + ("python-appdirs" ,python-appdirs) + ("python-configargparse" ,python-configargparse) + ("python-pyyaml" ,python-pyyaml) + ("python-ratelimiter" ,python-ratelimiter))))) + +(define-public python-pyqrcode + (package + (name "python-pyqrcode") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyQRCode" version)) + (sha256 + (base32 + "1m9ln8k9v7dfbh1i81225hx5mdsh8mpf9g7r4wpbfmiyfcs7dgzx")))) + (build-system python-build-system) + (home-page + "https://github.com/mnooner256/pyqrcode") + (synopsis "QR code generator") + (description + "Pyqrcode is a QR code generator written purely in Python with +SVG, EPS, PNG and terminal output.") + (license license:bsd-3))) + +(define-public python-seaborn + (package + (name "python-seaborn") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "seaborn" version)) + (sha256 + (base32 "0bqysi3fxfjl1866m5jq8z7mynhqbqnikim74dmzn8539iwkzj3n")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'start-xserver + (lambda* (#:key inputs #:allow-other-keys) + (let ((xorg-server (assoc-ref inputs "xorg-server"))) + ;; There must be a running X server and make check doesn't + ;; start one. Therefore we must do it. + (system (format #f "~a/bin/Xvfb :1 &" xorg-server)) + (setenv "DISPLAY" ":1") + #t))) + (replace 'check (lambda _ (invoke "pytest" "seaborn") #t))))) + (propagated-inputs + `(("python-pandas" ,python-pandas) + ("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("xorg-server" ,xorg-server))) + (home-page "http://stanford.edu/~mwaskom/software/seaborn/") + (synopsis "Statistical data visualization") + (description + "Seaborn is a library for making attractive and informative statistical +graphics in Python. It is built on top of matplotlib and tightly integrated +with the PyData stack, including support for numpy and pandas data structures +and statistical routines from scipy and statsmodels.") + (license license:bsd-3))) + +(define-public python2-seaborn + (package-with-python2 python-seaborn)) + +(define-public python-mpmath + (package + (name "python-mpmath") + (version "0.19") + (source (origin + (method url-fetch) + (uri (string-append "http://mpmath.org/files/mpmath-" + version ".tar.gz")) + (sha256 + (base32 + "08ijsr4ifrqv3cjc26mkw0dbvyygsa99in376hr4b96ddm1gdpb8")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? + (system* "python" "mpmath/tests/runtests.py" "-local"))))))) + (home-page "http://mpmath.org") + (synopsis "Arbitrary-precision floating-point arithmetic in python") + (description + "@code{mpmath} can be used as an arbitrary-precision substitute for +Python's float/complex types and math/cmath modules, but also does much +more advanced mathematics.") + (license license:bsd-3))) + +(define-public python2-mpmath + (package-with-python2 python-mpmath)) + +(define-public python-bigfloat + (package + (name "python-bigfloat") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bigfloat" version)) + (sha256 + (base32 "0xd7q4l7v0f463diznjv4k9wlaks80pn9drdqmfifi7zx8qvybi6")))) + (build-system python-build-system) + (inputs + `(("mpfr" ,mpfr))) + (home-page "https://github.com/mdickinson/bigfloat") + (synopsis "Arbitrary precision floating-point arithmetic for Python") + (description + "This packages provides a Python interface to the MPFR library for +multiprecision arithmetic.") + (license license:lgpl3+))) + +(define-public python2-bigfloat + (package-with-python2 python-bigfloat)) + +(define-public python-sympy + (package + (name "python-sympy") + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/sympy/sympy/releases/download/sympy-" + version "/sympy-" version ".tar.gz")) + (sha256 + (base32 "190n29sppw7g8ihilc5451y7jlfcaw56crqiqbf1jff43dlmfnxc")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Run the core tests after installation. By default it would run + ;; *all* tests, which take a very long time to complete and are known + ;; to be flaky. + (delete 'check) + (add-after 'install 'check + (lambda* (#:key outputs #:allow-other-keys) + (invoke "python3" "-c" "import sympy; sympy.test(\"/core\")") + #t))))) + (propagated-inputs + `(("python-mpmath" ,python-mpmath))) + (home-page "http://www.sympy.org/") + (synopsis "Python library for symbolic mathematics") + (description + "SymPy is a Python library for symbolic mathematics. It aims to become a +full-featured computer algebra system (CAS) while keeping the code as simple +as possible in order to be comprehensible and easily extensible.") + (license license:bsd-3))) + +(define-public python2-sympy + (package + (inherit (package-with-python2 python-sympy)) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Run the core tests after installation. By default it would run + ;; *all* tests, which take a very long time to complete and are known + ;; to be flaky. + (delete 'check) + (add-after 'install 'check + (lambda* (#:key outputs #:allow-other-keys) + (invoke "python" "-c" "import sympy; sympy.test(\"/core\")") + #t))))))) + +(define-public python-q + (package + (name "python-q") + (version "2.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "q" version)) + (sha256 + (base32 + "1mgfazh8fkizh6walra2zv885f3lcgr3nb02v1frfm4p8ddcy3yy")))) + (build-system python-build-system) + (home-page "https://github.com/zestyping/q") + (synopsis "Quick-and-dirty debugging output for tired programmers") + (description + "q is a Python module for \"print\" style of debugging Python code. It +provides convenient short API for print out of values, tracebacks, and +falling into the Python interpreter.") + (license license:asl2.0))) + +(define-public python2-q + (package-with-python2 python-q)) + +(define-public python2-xlib + (package + (name "python2-xlib") + (version "0.14") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/python-xlib/python-xlib" + "/" version "/" + "python-xlib-" version ".tar.gz")) + (sha256 + (base32 + "1sv0447j0rx8cgs3jhjl695p5pv13ihglcjlrrz1kq05lsvb0wa7")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ;Python 2 only + #:tests? #f)) ;no tests + (home-page "http://python-xlib.sourceforge.net/") + (synopsis "Python X11 client library") + (description + "The Python X Library is intended to be a fully functional X client +library for Python programs. It is useful to implement low-level X clients. +It is written entirely in Python.") + (license license:gpl2+))) + +(define-public python-singledispatch + (package + (name "python-singledispatch") + (version "3.4.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "singledispatch" version)) + (sha256 + (base32 + "171b7ip0hsq5qm83np40h3phlr36ym18w0lay0a8v08kvy3sy1jv")))) + (build-system python-build-system) + (native-inputs + `(("python-six" ,python-six))) ; required for conversion, not at run-time + (home-page + "http://docs.python.org/3/library/functools.html#functools.singledispatch") + (synopsis "Backport of singledispatch feature from Python 3.4") + (description + "This library brings functools.singledispatch from Python 3.4 to Python +2.6-3.3.") + (license license:expat))) + +(define-public python2-singledispatch + (package-with-python2 python-singledispatch)) + +;; the python- version can be removed with python-3.5 +(define-public python-backports-abc + (package + (name "python-backports-abc") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "backports_abc" version)) + (sha256 + (base32 + "1pkv8d1zxj5f9i227dxbjczncbv7ks7ywnjwyxfjagm02i2yafq3")))) + (build-system python-build-system) + (home-page "https://github.com/cython/backports_abc") + (synopsis "Backport of additions to the 'collections.abc' module") + (description + "Python-backports-abc provides a backport of additions to the +'collections.abc' module in Python-3.5.") + (license license:psfl))) + +(define-public python2-backports-abc + (package-with-python2 python-backports-abc)) + +(define-public python-backports-csv + (package + (name "python-backports-csv") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "backports.csv" version)) + (sha256 + (base32 + "1imzbrradkfn8s2m1qcimyn74dn1mz2p3j381jljn166rf2i6hlc")))) + (build-system python-build-system) + (home-page "https://github.com/ryanhiebert/backports.csv") + (synopsis "Backport of Python 3's csv module for Python 2") + (description + "Provides a backport of Python 3's @code{csv} module for parsing +comma separated values. The API of the @code{csv} module in Python 2 +is drastically different from the @code{csv} module in Python 3. +This is due, for the most part, to the difference between str in +Python 2 and Python 3.") + (license license:psfl))) + +(define-public python2-backports-csv + (package-with-python2 python-backports-csv)) + +(define-public python2-backports-shutil-get-terminal-size + (package + (name "python2-backports-shutil-get-terminal-size") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "backports.shutil_get_terminal_size" version)) + (sha256 + (base32 + "107cmn7g3jnbkp826zlj8rrj19fam301qvaqf0f3905f5217lgki")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "py.test" "-v"))))))) + (native-inputs + `(("python2-pytest" ,python2-pytest))) + (home-page "https://github.com/chrippa/backports.shutil_get_terminal_size") + (synopsis "Backport of Python 3.3's @code{shutil.get_terminal_size}") + (description + "This package provides a backport of the @code{get_terminal_size +function} from Python 3.3's @code{shutil}. +Unlike the original version it is written in pure Python rather than C, +so it might be a tiny bit slower.") + (license license:expat))) + +(define-public python-waf + (package + (name "python-waf") + (version "2.0.11") + (source (origin + (method url-fetch) + (uri (string-append "https://waf.io/" + "waf-" version ".tar.bz2")) + (sha256 + (base32 + "13zrniwkmfqgsgzi9v5m1367fppp9yzrz6z2ny6hy8dmpb8mj4z4")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + (invoke "python" "waf-light" "configure" "build"))) + (replace 'check + (lambda _ + (invoke "python" "waf" "--version"))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "waf" (string-append out "/bin"))) + #t)) + ;; waf breaks when it is wrapped. + (delete 'wrap)))) + (home-page "https://waf.io/") + (synopsis "Python-based build system") + (description + "Waf is a Python-based framework for configuring, compiling and installing +applications.") + (license license:bsd-3))) + +(define-public python2-waf + (package-with-python2 python-waf)) + +(define-public python-pyzmq + (package + (name "python-pyzmq") + (version "17.1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyzmq" version)) + (sha256 + (base32 "1pyxxrz60f88ffm0y6vpbx3q8jcr9ybz8fcilihwzwhh36n84ax7")))) + (build-system python-build-system) + (arguments + `(#:configure-flags + (list (string-append "--zmq=" (assoc-ref %build-inputs "zeromq"))) + ;; FIXME: You must build pyzmq with 'python setup.py build_ext + ;; --inplace' for 'python setup.py test' to work. + #:tests? #f)) + (inputs + `(("zeromq" ,zeromq))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("python-nose" ,python-nose))) + (home-page "https://github.com/zeromq/pyzmq") + (synopsis "Python bindings for 0MQ") + (description + "PyZMQ is the official Python binding for the ZeroMQ messaging library.") + (license license:bsd-4))) + +(define-public python2-pyzmq + (package-with-python2 python-pyzmq)) + +(define-public python-pep8 + ;; This package has been renamed to ‘pycodestyle’ and is no longer updated. + ;; Its last release (1.7.1) adds only a scary warning to this effect, breaking + ;; some dependents' test suites, and nothing more. + (package + (name "python-pep8") + (version "1.7.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pep8" version)) + (sha256 + (base32 + "002rkl4lsn6x2mxmf8ar00l0m8i3mzrc6pnzz77blyksmpsxa4x1")))) + (build-system python-build-system) + (home-page "https://pep8.readthedocs.org/") + (synopsis "Python style guide checker") + (description + "This tools checks Python code against some of the style conventions in +PEP 8.") + (license license:expat))) + +(define-public python2-pep8 + (package-with-python2 python-pep8)) + +(define-public python-pyflakes + (package + (name "python-pyflakes") + (version "2.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyflakes" version)) + (sha256 + (base32 + "0jba28czyvimdc72llms3f17swp3i8jdcabf5w0j00adfbn64xls")))) + (build-system python-build-system) + (home-page + "https://github.com/pyflakes/pyflakes") + (synopsis "Passive checker of Python programs") + (description + "Pyflakes statically checks Python source code for common errors.") + (license license:expat))) + +(define-public python2-pyflakes + (package-with-python2 python-pyflakes)) + +(define-public python-mccabe + (package + (name "python-mccabe") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "mccabe" version)) + (sha256 + (base32 + "07w3p1qm44hgxf3vvwz84kswpsx6s7kvaibzrsx5dzm0hli1i3fx")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest-bootstrap) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/flintwork/mccabe") + (synopsis "McCabe checker, plugin for flake8") + (description + "This package provides a Flake8 plug-in to compute the McCabe cyclomatic +complexity of Python source code.") + (license license:expat))) + +(define-public python2-mccabe + (package-with-python2 python-mccabe)) + +(define-public python-mccabe-0.2.1 + (package (inherit python-mccabe) + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "mccabe" version)) + (sha256 + (base32 + "0fi4a81kr5bcv5p4xgibqr595hyj5dafkqgsmfk96mfy8w71fajs")))))) + +(define-public python2-mccabe-0.2.1 + (package-with-python2 python-mccabe-0.2.1)) + +;; Flake8 2.4.1 requires an older version of pep8. +;; This should be removed ASAP. +(define-public python-pep8-1.5.7 + (package (inherit python-pep8) + (version "1.5.7") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/p/pep8/pep8-" + version + ".tar.gz")) + (sha256 + (base32 + "12b9bbdbwnspxgak14xg58c130x2n0blxzlms5jn2dszn8qj3d0m")))) + (arguments + ;; XXX Tests not compatible with Python 3.5. + '(#:tests? #f)))) + +(define-public python2-pep8-1.5.7 + (package-with-python2 python-pep8-1.5.7)) + +;; Flake8 2.4.1 requires an older version of pyflakes. +;; This should be removed ASAP. +(define-public python-pyflakes-0.8.1 + (package (inherit python-pyflakes) + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/p/pyflakes/pyflakes-" + version + ".tar.gz")) + (sha256 + (base32 + "0sbpq6pqm1i9wqi41mlfrsc5rk92jv4mskvlyxmnhlbdnc80ma1z")))) + (arguments + ;; XXX Tests not compatible with Python 3.5. + '(#:tests? #f)))) + +(define-public python2-pyflakes-0.8.1 + (package-with-python2 python-pyflakes-0.8.1)) + +;; This package is used by hypothesis which has thousands of dependent packages. +;; FIXME: Consolidate this with "python-flake8" below in the next rebuild cycle. +(define-public python-flake8-3.5 + (package + (name "python-flake8") + (version "3.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "flake8" version)) + (sha256 + (base32 + "184b33grvvjmiwlv9kyd7yng9qv5ld24154j70z332xxg9gjclvj")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Two errors don't seem to have assigned codes. + (add-after 'unpack 'delete-broken-test + (lambda _ (delete-file "tests/unit/test_pyflakes_codes.py") #t)) + (add-after 'unpack 'fix-problem-with-pycodestyle + (lambda _ + ;; See https://gitlab.com/pycqa/flake8/merge_requests/230 + ;; This should no longer be needed with the next release. + (substitute* "setup.py" + (("PEP8_PLUGIN\\('break_around_binary_operator'\\),") + "PEP8_PLUGIN('break_after_binary_operator'),\ +PEP8_PLUGIN('break_before_binary_operator'),")) + #t)) + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-v") + #t))))) + (propagated-inputs + `(("python-pycodestyle" ,python-pycodestyle) + ("python-pyflakes" ,python-pyflakes) + ("python-mccabe" ,python-mccabe))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest-bootstrap) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://gitlab.com/pycqa/flake8") + (synopsis + "The modular source code checker: pep8, pyflakes and co") + (description + "Flake8 is a wrapper around PyFlakes, pep8 and python-mccabe.") + (properties `((python2-variant . ,(delay python2-flake8-3.5)))) + (license license:expat))) + +(define-public python2-flake8-3.5 + (let ((base (package-with-python2 (strip-python2-variant python-flake8-3.5)))) + (package (inherit base) + (propagated-inputs + `(("python2-configparser" ,python2-configparser) + ("python2-enum34" ,python2-enum34) + ,@(package-propagated-inputs base)))))) + +;; Version 3.5.0 has compatibility issues with Pyflakes 2.0, so we need +;; this newer version. Keep it as a separate variable for now to avoid +;; rebuilding "python-hypothesis"; this should be removed in the next +;; rebuild cycle. +(define-public python-flake8 + (package + (inherit python-flake8-3.5) + (version "3.6.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "flake8" version)) + (sha256 + (base32 + "0w0nprx22rbvrrkbfx9v5jc5gskbm08g219l7r8wai8zfswgadba")))) + (arguments + (substitute-keyword-arguments (package-arguments python-flake8-3.5) + ((#:phases phases) + `(modify-phases ,phases + (delete 'delete-broken-test) + (delete 'fix-problem-with-pycodestyle))))) + (properties `((python2-variant . ,(delay python2-flake8)))))) + +(define-public python2-flake8 + (let ((base (package-with-python2 (strip-python2-variant python-flake8)))) + (package (inherit base) + (propagated-inputs + (package-propagated-inputs python2-flake8-3.5))))) + +;; python-hacking requires flake8 <2.6.0. +(define-public python-flake8-2.5 + (package + (inherit python-flake8) + (version "2.5.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "flake8" version)) + (sha256 + (base32 + "1snylqwbmrylbx3r1wpz8ggk98f6bcag4441ag8mm2l7wyn58sij")))) + (propagated-inputs + `(("python-pep8" ,python-pep8) + ,@(package-propagated-inputs python-flake8))) + (properties `((python2-variant . ,(delay python2-flake8-2.5)))))) + +(define-public python2-flake8-2.5 + (package + (inherit python2-flake8) + (version (package-version python-flake8-2.5)) + (source (origin + (inherit (package-source python-flake8-2.5)))) + (propagated-inputs + `(("python2-pep8" ,python2-pep8) + ,@(package-propagated-inputs python2-flake8))))) + +(define-public python-flake8-polyfill + (package + (name "python-flake8-polyfill") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "flake8-polyfill" version)) + (sha256 + (base32 + "1nlf1mkqw856vi6782qcglqhaacb23khk9wkcgn55npnjxshhjz4")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + (zero? (system* "py.test" "-v"))))))) + (native-inputs + `(("python-flake8" ,python-flake8) + ("python-mock" ,python-mock) + ("python-pep8" ,python-pep8) + ("python-pycodestyle" ,python-pycodestyle) + ("python-pytest" ,python-pytest))) + (home-page "https://gitlab.com/pycqa/flake8-polyfill") + (synopsis "Polyfill package for Flake8 plugins") + (description + "This package that provides some compatibility helpers for Flake8 +plugins that intend to support Flake8 2.x and 3.x simultaneously.") + (license license:expat))) + +(define-public python2-flake8-polyfill + (package-with-python2 python-flake8-polyfill)) + +(define-public python-mistune + (package + (name "python-mistune") + (version "0.8.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "mistune" version)) + (sha256 + (base32 + "0vkmsh0x480rni51lhyvigfdf06b9247z868pk3bal1wnnfl58sr")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose) + ("python-cython" ,python-cython))) + (home-page "https://github.com/lepture/mistune") + (synopsis "Markdown parser in pure Python") + (description "This package provides a fast markdown parser in pure +Python.") + (license license:bsd-3))) + +(define-public python2-mistune + (package-with-python2 python-mistune)) + +(define-public python-markdown + (package + (name "python-markdown") + (version "3.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Markdown" version)) + (sha256 + (base32 + "0z6v8649sr434d5r5zmrhydka7v7f9yas4bwcgkcs0650jdhybnh")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose) + ("python-pyyaml" ,python-pyyaml))) + (home-page "https://python-markdown.github.io/") + (synopsis "Python implementation of Markdown") + (description + "This package provides a Python implementation of John Gruber's +Markdown. The library features international input, various Markdown +extensions, and several HTML output formats. A command line wrapper +markdown_py is also provided to convert Markdown files to HTML.") + (license license:bsd-3))) + +(define-public python2-markdown + (package-with-python2 python-markdown)) + +(define-public python-ptyprocess + (package + (name "python-ptyprocess") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ptyprocess" version)) + (sha256 + (base32 + "0ra31k10v3629xq0kdn8lwmfbi97anmk48r03yvh7mks0kq96hg6")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "nosetests"))))))) + (home-page "https://github.com/pexpect/ptyprocess") + (synopsis "Run a subprocess in a pseudo terminal") + (description + "This package provides a Python library used to launch a subprocess in a +pseudo terminal (pty), and interact with both the process and its pty.") + (license license:isc))) + +(define-public python2-ptyprocess + (package-with-python2 python-ptyprocess)) + +(define-public python-cram + (package + (name "python-cram") + (version "0.7") + (home-page "https://bitheap.org/cram/") + (source (origin + (method url-fetch) + (uri (list (string-append home-page "cram-" + version ".tar.gz") + (pypi-uri "cram" version))) + (sha256 + (base32 + "0bvz6fwdi55rkrz3f50zsy35gvvwhlppki2yml5bj5ffy9d499vx")))) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda _ + (substitute* (find-files "cram" ".*\\.py$") + ;; Replace default shell path. + (("/bin/sh") (which "sh"))) + (substitute* (find-files "tests" ".*\\.t$") + (("md5") "md5sum") + (("/bin/bash") (which "bash")) + (("/bin/sh") (which "sh"))) + (substitute* "cram/_test.py" + ;; This hack works around a bug triggered by substituting + ;; the /bin/sh paths. "tests/usage.t" compares the output of + ;; "cram -h", which breaks the output at 80 characters. This + ;; causes the line showing the default shell to break into two + ;; lines, but the test expects a single line... + (("env\\['COLUMNS'\\] = '80'") + "env['COLUMNS'] = '160'")) + #t)) + (delete 'check) + (add-after 'install 'check + ;; The test phase uses the built library and executable. + ;; It's easier to run it after install since the build + ;; directory contains version-specific PATH. + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (setenv "PATH" (string-append (getenv "PATH") ":" + (assoc-ref outputs "out") "/bin")) + (zero? (system* "make" "test"))))))) + (build-system python-build-system) + (native-inputs + `(("python-coverage" ,python-coverage) + ("which" ,which))) + (synopsis "Simple testing framework for command line applications") + (description + "Cram is a functional testing framework for command line applications. +Cram tests look like snippets of interactive shell sessions. Cram runs each +command and compares the command output in the test with the command’s actual +output.") + (license license:gpl2+))) + +(define-public python2-cram + (package-with-python2 python-cram)) + +(define-public python-straight-plugin + (package + (name "python-straight-plugin") + (version "1.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "straight.plugin" version)) + (sha256 + (base32 + "069pjll4383p4kkgvcc40hgyvf79j2wdbpgwz77yigzxksh1gj62")))) + (build-system python-build-system) + (home-page "https://github.com/ironfroggy/straight.plugin") + (synopsis "Simple namespaced plugin facility") + (description "Straight Plugin provides a type of plugin you can create from +almost any existing Python modules, and an easy way for outside developers to +add functionality and customization to your projects with their own plugins.") + (license license:expat))) + +(define-public python2-straight-plugin + (package-with-python2 python-straight-plugin)) + +(define-public python-fonttools + (package + (name "python-fonttools") + (version "3.28.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "fonttools" version ".zip")) + (sha256 + (base32 + "0vsvjhidpb5kywpjgz1j3fywzkddxkb0afqai18qa3h6lqjyxwpb")))) + (build-system python-build-system) + (native-inputs + `(("unzip" ,unzip) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/behdad/fonttools") + (synopsis "Tools to manipulate font files") + (description + "FontTools/TTX is a library to manipulate font files from Python. It +supports reading and writing of TrueType/OpenType fonts, reading and writing +of AFM files, reading (and partially writing) of PS Type 1 fonts. The package +also contains a tool called “TTX” which converts TrueType/OpenType fonts to and +from an XML-based format.") + (license license:expat))) + +(define-public python2-fonttools + (package-with-python2 python-fonttools)) + +(define-public python-ly + (package + (name "python-ly") + (version "0.9.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri name version)) + (sha256 + (base32 + "0x98dv7p8mg26p4816yy8hz4f34zf6hpnnfmr56msgh9jnsm2qfl")))) + (build-system python-build-system) + (arguments + ;; FIXME: Some tests need network access. + '(#:tests? #f)) + (synopsis "Tool and library for manipulating LilyPond files") + (description "This package provides a Python library to parse, manipulate +or create documents in LilyPond format. A command line program ly is also +provided that can be used to do various manipulations with LilyPond files.") + (home-page "https://pypi.python.org/pypi/python-ly") + (license license:gpl2+))) + +(define-public python-appdirs + (package + (name "python-appdirs") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "appdirs" version)) + (sha256 + (base32 + "14id6wxi12lgyw0mg3bcfnf888ad07jz9yj46gfzhn186z8rcn4y")))) + (build-system python-build-system) + (home-page "https://github.com/ActiveState/appdirs") + (synopsis + "Determine platform-specific dirs, e.g. a \"user data dir\"") + (description + "This module provides a portable way of finding out where user data +should be stored on various operating systems.") + (license license:expat))) + +(define-public python2-appdirs + (package-with-python2 python-appdirs)) + +(define-public python-llfuse + (package + (name "python-llfuse") + (version "1.3.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "llfuse" version ".tar.bz2")) + (sha256 + (base32 + "1n7a90jww3ly49fm7x27m3xw3la3qfrnykcakga654g6kcyjlhbf")))) + (build-system python-build-system) + (inputs + `(("fuse" ,fuse) + ("attr" ,attr))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (synopsis "Python bindings for FUSE") + (description + "Python-LLFUSE is a set of Python bindings for the low level FUSE API.") + (home-page "https://bitbucket.org/nikratio/python-llfuse/") + (license license:lgpl2.0+) + (properties `((python2-variant . ,(delay python2-llfuse)))))) + +(define-public python2-llfuse + (package (inherit (package-with-python2 + (strip-python2-variant python-llfuse))) + (propagated-inputs `(("python2-contextlib2" ,python2-contextlib2))))) + +;; For attic-0.16 +(define-public python-llfuse-0.41 + (package (inherit python-llfuse) + (version "0.41.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://bitbucket.org/nikratio/python-llfuse/downloads/" + "llfuse-" version ".tar.bz2")) + (sha256 + (base32 + "1imlqw9b73086y97izr036f58pgc5akv4ihc2rrf8j5h75jbrlaa")))) + ;; Python-LLFUSE < 0.42 includes underscore.js, which is MIT (expat) + ;; licensed. The rest of the package is licensed under LGPL2.0 or later. + (license (list license:expat license:lgpl2.0+)))) + +(define-public python-msgpack + (package + (name "python-msgpack") + (version "0.5.6") + (source (origin + (method url-fetch) + (uri (pypi-uri "msgpack" version)) + (sha256 + (base32 + "1hz2dba1nvvn52afg34liijsm7kn65cmn06dl0xbwld6bb4cis0f")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26)) + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH"))) + (invoke "pytest" "-v" "test"))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (synopsis "MessagePack (de)serializer") + (description "MessagePack is a fast, compact binary serialization format, +suitable for similar data to JSON. This package provides CPython bindings for +reading and writing MessagePack data.") + (home-page "https://pypi.python.org/pypi/msgpack/") + (license license:asl2.0))) + +;; This msgpack library's name changed from "python-msgpack" to "msgpack" with +;; release 0.5. Some packages like borg still call it by the old name for now. +;; <https://bugs.gnu.org/30662> +(define-public python-msgpack-transitional + (package + (inherit python-msgpack) + (name "python-msgpack-transitional") + (arguments + (substitute-keyword-arguments (package-arguments python-msgpack) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'configure-transitional + (lambda _ + ;; Keep using the old name. + (substitute* "setup.py" + (("TRANSITIONAL = False") + "TRANSITIONAL = 1")) + #t)))))))) + +(define-public python2-msgpack + (package-with-python2 python-msgpack)) + +(define-public python-netaddr + (package + (name "python-netaddr") + (version "0.7.19") + (source + (origin + (method url-fetch) + (uri (pypi-uri "netaddr" version)) + (sha256 + (base32 + "1zdfadvpq4lmcqzr383gywxn4xyn355kj1n3lk9q2l03vmyfrbiq")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ;; No tests. + (home-page "https://github.com/drkjam/netaddr/") + (synopsis "Pythonic manipulation of network addresses") + (description + "A Python library for representing and manipulating IPv4, IPv6, CIDR, EUI +and MAC network addresses.") + (license license:bsd-3))) + +(define-public python2-netaddr + (package-with-python2 python-netaddr)) + +(define-public python-wrapt + (package + (name "python-wrapt") + (version "1.10.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "wrapt" version)) + (sha256 + (base32 + "1ip3dwib39xhp79kblskgvz3fjzcwxgx3fs3ahdixhpjg7a61mfl")))) + (build-system python-build-system) + (arguments + ;; Tests are not included in the tarball, they are only available in the + ;; git repository. + `(#:tests? #f)) + (home-page "https://github.com/GrahamDumpleton/wrapt") + (synopsis "Module for decorators, wrappers and monkey patching") + (description + "The aim of the wrapt module is to provide a transparent object proxy for + Python, which can be used as the basis for the construction of function + wrappers and decorator functions.") + (license license:bsd-2))) + +(define-public python2-wrapt + (package-with-python2 python-wrapt)) + +(define-public python-xlrd + (package + (name "python-xlrd") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "xlrd" version)) + (sha256 + (base32 + "0s8hjiz01vbhy85xalrz0qlsmd9ypf36zjqrf97hh984spapvy0g")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Current test in setup.py does not work as of 1.0.0, so use nose to + ;; run tests instead for now. + (replace 'check (lambda _ (zero? (system* "nosetests"))))))) + (native-inputs `(("python-nose" ,python-nose))) + (home-page "http://www.python-excel.org/") + (synopsis "Library for extracting data from Excel files") + (description "This packages provides a library to extract data from +spreadsheets using Microsoft Excel proprietary file formats @samp{.xls} and +@samp{.xlsx} (versions 2.0 onwards). It has support for Excel dates and is +Unicode-aware. It is not intended as an end-user tool.") + (license license:bsd-3))) + +(define-public python2-xlrd + (package-with-python2 python-xlrd)) + +(define-public python-prettytable + (package + (name "python-prettytable") + (version "0.7.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/P/PrettyTable/" + "prettytable-" version ".tar.bz2")) + (sha256 + (base32 + "0diwsicwmiq2cpzpxri7cyl5fmsvicafw6nfqf6p6p322dji2g45")))) + (build-system python-build-system) + (home-page "http://code.google.com/p/prettytable/") + (synopsis "Display tabular data in an ASCII table format") + (description + "A library designed to represent tabular data in visually appealing ASCII +tables. PrettyTable allows for selection of which columns are to be printed, +independent alignment of columns (left or right justified or centred) and +printing of sub-tables by specifying a row range.") + (license license:bsd-3))) + +(define-public python2-prettytable + (package-with-python2 python-prettytable)) + +(define-public python-tables + (package + (name "python-tables") + (version "3.4.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tables" version)) + (sha256 + (base32 + "0affz7k8babh8wdmsgrz5jxrd569by2w8ffimcxs9wiaf5rw1idx")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) + (build-system python-build-system) + (arguments + `(;; FIXME: python-build-system does not pass configure-flags to "build" + ;; or "check", so we must override the build and check phases. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'use-gcc + (lambda _ + (substitute* "setup.py" + (("compiler = new_compiler\\(\\)" line) + (string-append line + "\ncompiler.set_executables(compiler='gcc'," + "compiler_so='gcc'," + "linker_exe='gcc'," + "linker_so='gcc -shared')"))) + #t)) + (replace 'build + (lambda* (#:key inputs #:allow-other-keys) + (zero? (system* "python" "setup.py" "build" + (string-append "--hdf5=" + (assoc-ref inputs "hdf5")))))) + (replace 'check + (lambda* (#:key inputs #:allow-other-keys) + (zero? (system* "python" "setup.py" "check" + (string-append "--hdf5=" + (assoc-ref inputs "hdf5"))))))))) + (propagated-inputs + `(("python-numexpr" ,python-numexpr) + ("python-numpy" ,python-numpy))) + (native-inputs + `(("python-cython" ,python-cython) + ("pkg-config" ,pkg-config))) + (inputs + `(("hdf5" ,hdf5) + ("bzip2" ,bzip2) + ("zlib" ,zlib))) + (home-page "http://www.pytables.org/") + (synopsis "Hierarchical datasets for Python") + (description "PyTables is a package for managing hierarchical datasets and +designed to efficiently cope with extremely large amounts of data.") + (license license:bsd-3))) + +(define-public python2-tables + (package-with-python2 python-tables)) + +(define-public python-pyasn1 + (package + (name "python-pyasn1") + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyasn1" version)) + (sha256 + (base32 + "1z5h38anjzzrxpraa9iq9llffyx2zs8gx0q6dc1g029miwnn50gv")))) + (build-system python-build-system) + (home-page "http://pyasn1.sourceforge.net/") + (synopsis "ASN.1 types and codecs") + (description + "This is an implementation of ASN.1 types and codecs in Python. It is +suitable for a wide range of protocols based on the ASN.1 specification.") + (license license:bsd-2))) + +(define-public python2-pyasn1 + (package-with-python2 python-pyasn1)) + +(define-public python-pyasn1-modules + (package + (name "python-pyasn1-modules") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyasn1-modules" version)) + (sha256 + (base32 + "0ivm850yi7ajjbi8j115qpsj95bgxdsx48nbjzg0zip788c3xkx0")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pyasn1" ,python-pyasn1))) + (home-page "https://sourceforge.net/projects/pyasn1/") + (synopsis "ASN.1 codec implementations") + (description + "Pyasn1-modules is a collection of Python modules providing ASN.1 types and +implementations of ASN.1-based codecs and protocols.") + (license license:bsd-3))) + +(define-public python2-pyasn1-modules + (package-with-python2 python-pyasn1-modules)) + +(define-public python-ipaddress + (package + (name "python-ipaddress") + (version "1.0.22") + (source (origin + (method url-fetch) + (uri (pypi-uri "ipaddress" version)) + (sha256 + (base32 + "0b570bm6xqpjwqis15pvdy6lyvvzfndjvkynilcddjj5x98wfimi")))) + (build-system python-build-system) + (home-page "https://github.com/phihag/ipaddress") + (synopsis "IP address manipulation library") + (description + "This package provides a fast, lightweight IPv4/IPv6 manipulation library + in Python. This library is used to create, poke at, and manipulate IPv4 and + IPv6 addresses and networks. This is a port of the Python 3.3 ipaddress + module to older versions of Python.") + (license license:psfl))) + +(define-public python2-ipaddress + (package-with-python2 python-ipaddress)) + +(define-public python2-ipaddr + (package + (name "python2-ipaddr") + (version "2.1.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ipaddr" version)) + (sha256 + (base32 "1dwq3ngsapjc93fw61rp17fvzggmab5x1drjzvd4y4q0i255nm8v")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ;version 2 only + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* _ + (zero? (system* "python" "ipaddr_test.py"))))))) + (home-page "https://github.com/google/ipaddr-py") + (synopsis "IP address manipulation library") + (description + "Ipaddr is a Python@tie{}2 library for creating and manupilating IPv4 and +IPv6 addresses and networks. + +For new implementations you may prefer to use the standard module +@code{ipaddress}, which was introduced in Python 3.3 and backported to older +versions of Python.") + (license license:asl2.0))) + +(define-public python-idna + (package + (name "python-idna") + (version "2.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "idna" version)) + (sha256 + (base32 + "05jam7d31767dr12x0rbvvs8lxnpb1mhdb2zdlfxgh83z6k3hjk8")))) + (build-system python-build-system) + (home-page "https://github.com/kjd/idna") + (synopsis "Internationalized domain names in applications") + (description + "This is a library to support the Internationalised Domain Names in +Applications (IDNA) protocol as specified in RFC 5891. This version of the +protocol is often referred to as “IDNA2008” and can produce different results +from the earlier standard from 2003. The library is also intended to act as a +suitable drop-in replacement for the “encodings.idna” module that comes with +the Python standard library but currently only supports the older 2003 +specification.") + (license license:bsd-4))) + +(define-public python2-idna + (package-with-python2 python-idna)) + +(define-public python-idna-ssl + (package + (name "python-idna-ssl") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "idna-ssl" version)) + (sha256 + (base32 + "0ydrc8hpg9mdr5hqq1lqfsfbn6sjq69slwpfrnlrm3k0phqg14qj")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;circular dependency with python-aiohttp + (home-page "https://github.com/aio-libs/idna-ssl") + (synopsis "Patch @code{ssl.match_hostname} for Unicode(idna) domains support") + (description "Patch @code{ssl.match_hostname} for Unicode(idna) +domains support.") + (license license:expat))) + +(define-public python-pretend + (package + (name "python-pretend") + (version "1.0.9") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/p/" + "pretend/pretend-" version ".tar.gz")) + (sha256 + (base32 + "040vm94lcbscg5p81g1icmwwwa2jm7wrd1ybmxnv1sz8rl8bh3n9")))) + (build-system python-build-system) + (home-page "https://github.com/alex/pretend") + (synopsis "Library for stubbing in Python") + (description + "Pretend is a library to make stubbing with Python easier. Stubbing is a +technique for writing tests. You may hear the term mixed up with mocks, +fakes, or doubles. Basically, a stub is an object that returns pre-canned +responses, rather than doing any computation.") + (license license:bsd-3))) + +(define-public python2-pretend + (package-with-python2 python-pretend)) + +(define-public python-pip + (package + (name "python-pip") + (version "18.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pip" version)) + (sha256 + (base32 + "188fclay154s520n43s7cxxlhdaiysvxf19zk8vr1xbyjyyr58n0")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; there are no tests in the pypi archive. + (home-page "https://pip.pypa.io/") + (synopsis "Package manager for Python software") + (description + "Pip is a package manager for Python software, that finds packages on the +Python Package Index (PyPI).") + (license license:expat))) + +(define-public python2-pip + (package-with-python2 python-pip)) + +(define-public python-tlsh + (package + (name "python-tlsh") + (version "3.4.5") + (home-page "https://github.com/trendmicro/tlsh") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/trendmicro/tlsh/archive/v" + version ".tar.gz")) + (sha256 + (base32 + "1x1vahd4zg5kpyr9h9hs3fvh460p25rjy4cclwdnbbw8x3vc30q3")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system cmake-build-system) + (arguments + '(#:out-of-source? #f + #:phases (modify-phases %standard-phases + (replace + 'install + (lambda* (#:key outputs #:allow-other-keys) + ;; Build and install the Python bindings. The underlying + ;; C++ library is apparently not meant to be installed. + (let ((out (assoc-ref outputs "out"))) + (with-directory-excursion "py_ext" + (and (system* "python" "setup.py" "build") + (system* "python" "setup.py" "install" + (string-append "--prefix=" out)))))))))) + (inputs `(("python" ,python-wrapper))) ;for the bindings + (synopsis "Fuzzy matching library for Python") + (description + "Trend Micro Locality Sensitive Hash (TLSH) is a fuzzy matching library. +Given a byte stream with a minimum length of 256 bytes, TLSH generates a hash +value which can be used for similarity comparisons. Similar objects have +similar hash values, which allows for the detection of similar objects by +comparing their hash values. The byte stream should have a sufficient amount +of complexity; for example, a byte stream of identical bytes will not generate +a hash value.") + (license license:asl2.0))) + +(define-public python2-tlsh + (package + (inherit python-tlsh) + (name "python2-tlsh") + (inputs `(("python" ,python-2))))) + +(define-public python-termcolor + (package + (name "python-termcolor") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "termcolor" version)) + (sha256 + (base32 + "0fv1vq14rpqwgazxg4981904lfyp84mnammw7y046491cv76jv8x")))) + (build-system python-build-system) + (arguments + ;; There are no tests. + `(#:tests? #f)) + (home-page "https://pypi.python.org/pypi/termcolor") + (synopsis "ANSII Color formatting for terminal output") + (description + "This package provides ANSII Color formatting for output in terminals.") + (license license:expat))) + +(define-public python2-termcolor + (package-with-python2 python-termcolor)) + +(define-public python-libarchive-c + (package + (name "python-libarchive-c") + (version "2.8") + (source (origin + (method url-fetch) + (uri (pypi-uri "libarchive-c" version)) + (sha256 + (base32 + "0qg0v1s9c1xdk9philhnv8k6c6nicvnvfwlc0j9srg90jmdlvm06")))) + (build-system python-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (add-before + 'build 'reference-libarchive + (lambda* (#:key inputs #:allow-other-keys) + ;; Retain the absolute file name of libarchive.so. + (let ((libarchive (assoc-ref inputs "libarchive"))) + (substitute* "libarchive/ffi.py" + (("find_library\\('archive'\\)") + (string-append "'" libarchive + "/lib/libarchive.so'")))))) + (replace 'check + (lambda _ (invoke "pytest" "-vv")))))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest))) + (inputs + `(("libarchive" ,libarchive))) + (home-page "https://github.com/Changaco/python-libarchive-c") + (synopsis "Python interface to libarchive") + (description + "This package provides Python bindings to libarchive, a C library to +access possibly compressed archives in many different formats. It uses +Python's @code{ctypes} foreign function interface (FFI).") + (license license:lgpl2.0+))) + +(define-public python2-libarchive-c + (package-with-python2 python-libarchive-c)) + +(define-public python-file + (package + (inherit file) + (name "python-file") + (build-system python-build-system) + (arguments + '(#:tests? #f ;no tests + #:configure-flags '("--single-version-externally-managed" "--root=/") + #:phases (modify-phases %standard-phases + (add-before 'build 'change-directory + (lambda _ + (chdir "python") + #t)) + (add-before 'build 'set-library-file-name + (lambda* (#:key inputs #:allow-other-keys) + (let ((file (assoc-ref inputs "file"))) + (substitute* "magic.py" + (("find_library\\('magic'\\)") + (string-append "'" file "/lib/libmagic.so'"))) + #t)))))) + (inputs `(("file" ,file))) + (self-native-input? #f) + (synopsis "Python bindings to the libmagic file type guesser. Note that +this module and the python-magic module both provide a \"magic.py\" file; +these two modules, which are different and were developed separately, both +serve the same purpose: provide Python bindings for libmagic."))) + +(define-public python2-file + (package-with-python2 python-file)) + +(define-public python-debian + (package + (name "python-debian") + (home-page "https://salsa.debian.org/python-debian-team/python-debian") + (version "0.1.28") + (source + (origin + (method url-fetch) + (uri (pypi-uri name version)) + (sha256 + (base32 + "0i15f0xzx679sd0ldq2sls9pnnps9fv6vhqvnv9dzf4qhma42i0y")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (synopsis "Debian package related modules") + (description + ;; XXX: Use @enumerate instead of @itemize to work around + ;; <http://bugs.gnu.org/21772>. + "This package provides Python modules that abstract many formats of +Debian-related files, such as: + +@enumerate +@item Debtags information; +@item @file{debian/changelog} files; +@item packages files, pdiffs; +@item control files of single or multiple RFC822-style paragraphs---e.g. + @file{debian/control}, @file{.changes}, @file{.dsc}; +@item Raw @file{.deb} and @file{.ar} files, with (read-only) access to + contained files and meta-information. +@end enumerate\n") + + ;; Modules are either GPLv2+ or GPLv3+. + (license license:gpl3+))) + +(define-public python2-debian + (package-with-python2 python-debian)) + +(define-public python-nbformat + (package + (name "python-nbformat") + (version "4.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nbformat" version)) + (sha256 + (base32 + "00nlf08h8yc4q73nphfvfhxrcnilaqanb8z0mdy6nxk0vzq4wjgp")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ; no test target + (propagated-inputs + `(("python-ipython-genutils" ,python-ipython-genutils) + ("python-jsonschema" ,python-jsonschema) + ("python-jupyter-core" ,python-jupyter-core) + ("python-traitlets" ,python-traitlets))) + (home-page "http://jupyter.org") + (synopsis "Jupyter Notebook format") + (description "This package provides the reference implementation of the +Jupyter Notebook format and Python APIs for working with notebooks.") + (license license:bsd-3))) + +(define-public python2-nbformat + (package-with-python2 python-nbformat)) + +(define-public python-bleach + (package + (name "python-bleach") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bleach" version)) + (sha256 + (base32 + "0jvg3jxrvnx7xmm9gj262v60ib452xlnwlb0navyp7jsvcd0d4qj")))) + (build-system python-build-system) + (propagated-inputs + `(("python-html5lib" ,python-html5lib-0.9) + ("python-six" ,python-six))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://github.com/jsocol/bleach") + (synopsis "Whitelist-based HTML-sanitizing tool") + (description "Bleach is an easy whitelist-based HTML-sanitizing tool.") + (license license:asl2.0))) + +(define-public python2-bleach + (package-with-python2 python-bleach)) + +(define-public python-entrypoints + (package + (name "python-entrypoints") + (version "0.2.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/takluyver/entrypoints/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1pdvgfr5bxyvnfvxbsd3zi0dh3il71pc4k6rinx6zpps91b84a56")))) + (build-system python-build-system) + ;; The package does not come with a setup.py file, so we have to generate + ;; one ourselves. + (arguments + `(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'create-setup.py + (lambda _ + (call-with-output-file "setup.py" + (lambda (port) + (format port "\ +from setuptools import setup +setup(name='entrypoints', version='~a', py_modules=['entrypoints']) +" ,version)))))))) + (home-page "https://github.com/takluyver/entrypoints") + (synopsis "Discover and load entry points from installed Python packages") + (description "Entry points are a way for Python packages to advertise +objects with some common interface. The most common examples are +@code{console_scripts} entry points, which define shell commands by +identifying a Python function to run. The @code{entrypoints} module contains +functions to find and load entry points.") + (license license:expat))) + +(define-public python2-entrypoints + (package-with-python2 python-entrypoints)) + +(define-public python-nbconvert + (package + (name "python-nbconvert") + (version "5.0.0b1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nbconvert" version)) + (sha256 + (base32 + "0brclbb18l4nmd5qy3dl9wn05rjdh1fz4rmzdlfqacj12rcdvdgp")))) + (build-system python-build-system) + (arguments + `(;; The "bdist_egg" target is disabled by default, causing the installation + ;; to fail. + #:configure-flags (list "bdist_egg") + ;; FIXME: 5 failures, 40 errors. + #:tests? #f)) + ;; #:phases + ;; (modify-phases %standard-phases + ;; (replace 'check + ;; (lambda _ + ;; (zero? (system* "py.test" "-v"))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-bleach" ,python-bleach) + ("python-entrypoints" ,python-entrypoints) + ("python-jinja2" ,python-jinja2) + ("python-jupyter-core" ,python-jupyter-core) + ("python-mistune" ,python-mistune) + ("python-nbformat" ,python-nbformat) + ("python-pygments" ,python-pygments) + ("python-traitlets" ,python-traitlets))) + (home-page "http://jupyter.org") + (synopsis "Converting Jupyter Notebooks") + (description "The @code{nbconvert} tool, @{jupyter nbconvert}, converts +notebooks to various other formats via Jinja templates. It allows you to +convert an @code{.ipynb} notebook file into various static formats including: + +@enumerate +@item HTML +@item LaTeX +@item PDF +@item Reveal JS +@item Markdown (md) +@item ReStructured Text (rst) +@item executable script +@end enumerate\n") + (license license:bsd-3))) + +(define-public python2-nbconvert + (package-with-python2 python-nbconvert)) + +(define-public python-prometheus-client + (package + (name "python-prometheus-client") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "prometheus_client" version)) + (sha256 + (base32 + "0g7rpv1pq2lab1nfqdx98z9d3bqwc400alg1j4ynrpjkrbsizhg8")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; tests are not included + (propagated-inputs + `(("python-twisted" ,python-twisted))) + (home-page "https://github.com/prometheus/client_python") + (synopsis "Python client for the Prometheus monitoring system") + (description + "This package provides a Python client for the Prometheus monitoring +system.") + (license license:asl2.0))) + +(define-public python2-prometheus-client + (package-with-python2 python-prometheus-client)) + +(define-public python-notebook + (package + (name "python-notebook") + (version "5.7.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "notebook" version)) + (sha256 + (base32 + "0jm7324mbxljmn9hgapj66q7swyz5ai92blmr0jpcy0h80x6f26r")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; These tests require a browser + (delete-file-recursively "notebook/tests/selenium") + ;; Some tests need HOME + (setenv "HOME" "/tmp") + ;; This file contains "warningfilters", which are not supported + ;; by this version of nose. + (delete-file "setup.cfg") + (with-directory-excursion "/tmp" + (invoke "nosetests" "-v")) + #t))))) + (propagated-inputs + `(("python-jupyter-core" ,python-jupyter-core) + ("python-nbformat" ,python-nbformat) + ("python-nbconvert" ,python-nbconvert) + ("python-prometheus-client" ,python-prometheus-client) + ("python-send2trash" ,python-send2trash) + ("python-terminado" ,python-terminado))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-requests" ,python-requests))) + (home-page "http://jupyter.org/") + (synopsis "Web-based notebook environment for interactive computing") + (description + "The Jupyter HTML notebook is a web-based notebook environment for +interactive computing.") + (properties `((python2-variant . ,(delay python2-notebook)))) + (license license:bsd-3))) + +(define-public python2-notebook + (let ((base (package-with-python2 + (strip-python2-variant python-notebook)))) + (package (inherit base) + (native-inputs + `(("python2-mock" ,python2-mock) + ,@(package-native-inputs base))) + (arguments + (substitute-keyword-arguments (package-arguments base) + ((#:phases phases) + `(modify-phases ,phases + (add-before 'check 'disable-test-case + ;; The test requires network access to localhost. Curiously it + ;; fails with Python 2 only. Simply make the test-case return + ;; immediately. + (lambda _ + (substitute* + "notebook/services/nbconvert/tests/test_nbconvert_api.py" + (("formats = self.nbconvert_api") "return #"))))))))))) + +(define-public python-widgetsnbextension + (package + (name "python-widgetsnbextension") + (version "3.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "widgetsnbextension" version)) + (sha256 + (base32 + "0rc2nivdy7k4m3vljx7wdh2jh11djapcgwhvzlbs0isl8gl8nqgs")))) + (build-system python-build-system) + (propagated-inputs + `(("python-ipykernel" ,python-ipykernel) + ("python-notebook" ,python-notebook))) + (native-inputs + `(("python-certifi" ,python-certifi) + ("python-nose" ,python-nose))) + (home-page "https://ipython.org") + (synopsis "IPython HTML widgets for Jupyter") + (description "This package provides interactive HTML widgets for Jupyter +notebooks.") + (license license:bsd-3))) + +(define-public python2-widgetsnbextension + (package-with-python2 python-widgetsnbextension)) + +(define-public python-ipywidgets + (package + (name "python-ipywidgets") + (version "5.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ipywidgets" version)) + (sha256 + (base32 + "1lk0qrr5l9a0z7qkkn30hv5832whxwxymf1l576fmmad0n7hkxms")))) + (build-system python-build-system) + (propagated-inputs + `(("python-ipython" ,python-ipython) + ("python-traitlets" ,python-traitlets) + ("python-widgetsnbextension" ,python-widgetsnbextension))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-pytest" ,python-pytest))) + (home-page "https://ipython.org") + (synopsis "IPython HTML widgets for Jupyter") + (description "Ipywidgets are interactive HTML widgets for Jupyter +notebooks and the IPython kernel. Notebooks come alive when interactive +widgets are used. Users gain control of their data and can visualize changes +in the data.") + (license license:bsd-3))) + +(define-public python2-ipywidgets + (package-with-python2 python-ipywidgets)) + +(define-public python-jupyter-console + (package + (name "python-jupyter-console") + (version "5.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyter_console" version)) + (sha256 + (base32 + "1kam1qzgwr7srhm5r6aj90di5sws4bq0jmiw15452ddamb9yspal")))) + (build-system python-build-system) + ;; Tests only run in an TTY. + (arguments `(#:tests? #f)) + (propagated-inputs + `(("python-ipykernel" ,python-ipykernel) + ("python-jupyter-client" ,python-jupyter-client) + ("python-prompt-toolkit" ,python-prompt-toolkit-1) + ("python-pygments" ,python-pygments))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://jupyter.org") + (synopsis "Jupyter terminal console") + (description "This package provides a terminal-based console frontend for +Jupyter kernels. It also allows for console-based interaction with non-Python +Jupyter kernels such as IJulia and IRKernel.") + (license license:bsd-3))) + +(define-public python2-jupyter-console + (package-with-python2 python-jupyter-console)) + +;; The python-ipython and python-jupyter-console require each other. To get +;; the functionality in both packages working, strip down the +;; python-jupyter-console package when using it as an input to python-ipython. +(define python-jupyter-console-minimal + (package + (inherit python-jupyter-console) + (name "python-jupyter-console-minimal") + (arguments + (substitute-keyword-arguments + (package-arguments python-jupyter-console) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'install 'delete-bin + (lambda* (#:key outputs #:allow-other-keys) + ;; Delete the bin files, to avoid conflicts in profiles + ;; where python-ipython and python-jupyter-console are + ;; both present. + (delete-file-recursively + (string-append + (assoc-ref outputs "out") "/bin")))))))) + ;; Remove the python-ipython propagated input, to avoid the cycle + (propagated-inputs + (alist-delete + "python-ipython" + (package-propagated-inputs python-jupyter-console))))) + +(define-public python-qtconsole + (package + (name "python-qtconsole") + (version "4.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "qtconsole" version)) + (sha256 + (base32 + "1b03n1ixzscm0jw97l4dq5iy4fslnqxq5bb8287xb7n2a1gs26xw")))) + (build-system python-build-system) + (arguments + ;; XXX: Tests are disabled, because this package needs python-ipython 7, + ;; but we only have the LTS version 5.x. This means that there might be + ;; runtime errors, but since this is a dependency of the Jupyter package, + ;; and Jupyter can be used without the qtconsole we can overlook this for + ;; now. + `(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda _ + (setenv "QT_QPA_PLATFORM" "offscreen") + #t))))) + (propagated-inputs + `(("python-ipykernel" ,python-ipykernel) + ("python-ipython" ,python-ipython))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "http://jupyter.org") + (synopsis "Jupyter Qt console") + (description "This package provides a Qt-based console for Jupyter with +support for rich media output.") + (license license:bsd-3))) + +(define-public jupyter + (package + (name "jupyter") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyter" version)) + (sha256 + (base32 + "0pwf3pminkzyzgx5kcplvvbvwrrzd3baa7lmh96f647k30rlpp6r")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; there are none. + (propagated-inputs + `(("python-ipykernel" ,python-ipykernel) + ("python-ipywidgets" ,python-ipywidgets) + ("python-jupyter-console" ,python-jupyter-console) + ("python-nbconvert" ,python-nbconvert) + ("python-notebook" ,python-notebook) + ("python-qtconsole" ,python-qtconsole))) + (native-search-paths + (list (search-path-specification + (variable "JUPYTER_PATH") + (files '("share/jupyter"))))) + (home-page "https://jupyter.org") + (synopsis "Web application for interactive documents") + (description + "The Jupyter Notebook is a web application that allows you to create and +share documents that contain live code, equations, visualizations and +explanatory text. Uses include: data cleaning and transformation, numerical +simulation, statistical modeling, machine learning and much more.") + (license license:bsd-3))) + +(define-public python-chardet + (package + (name "python-chardet") + (version "3.0.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "chardet" version)) + (sha256 + (base32 + "1bpalpia6r5x1kknbk11p1fzph56fmmnp405ds8icksd3knr5aw4")))) + (native-inputs + `(("python-hypothesis" ,python-hypothesis) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (build-system python-build-system) + (home-page "https://github.com/chardet/chardet") + (synopsis "Universal encoding detector for Python 2 and 3") + (description + "This package provides @code{chardet}, a Python module that can +automatically detect a wide range of file encodings.") + (license license:lgpl2.1+))) + +(define-public python2-chardet + (package-with-python2 python-chardet)) + +(define-public python-docopt + (package + (name "python-docopt") + (version "0.6.2") + (source + (origin + (method url-fetch) + ;; The release on PyPI does not include tests. + (uri (string-append + "https://github.com/docopt/docopt/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "16bf890xbdz3m30rsv2qacklh2rdn1zrfspfnwzx9g7vwz8yw4r1")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "py.test")))))) + (home-page "http://docopt.org") + (synopsis "Command-line interface description language for Python") + (description "This library allows the user to define a command-line +interface from a program's help message rather than specifying it +programatically with command-line parsers like @code{getopt} and +@code{argparse}.") + (license license:expat))) + +(define-public python2-docopt + (package-with-python2 python-docopt)) + +(define-public python-pythondialog + (package + (name "python-pythondialog") + (version "3.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pythondialog" version)) + (sha256 + (base32 + "1728ghsran47jczn9bhlnkvk5bvqmmbihabgif5h705b84r1272c")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-path + (lambda* (#:key inputs #:allow-other-keys) + (let* ((dialog (assoc-ref inputs "dialog"))) + ;; Since this library really wants to grovel the search path, we + ;; must hardcode dialog's store path into it. + (substitute* "dialog.py" + (("os.getenv\\(\"PATH\", \":/bin:/usr/bin\"\\)") + (string-append "os.getenv(\"PATH\") + \":" dialog "/bin\""))) + #t)))) + #:tests? #f)) ; no test suite + (propagated-inputs + `(("dialog" ,dialog))) + (home-page "http://pythondialog.sourceforge.net/") + (synopsis "Python interface to the UNIX dialog utility") + (description "A Python wrapper for the dialog utility. Its purpose is to +provide an easy to use, pythonic and comprehensive Python interface to dialog. +This allows one to make simple text-mode user interfaces on Unix-like systems") + (license license:lgpl2.1) + (properties `((python2-variant . ,(delay python2-pythondialog)))))) + +(define-public python2-pythondialog + (let ((base (package-with-python2 (strip-python2-variant python-pythondialog)))) + (package + (inherit base) + (version (package-version python-pythondialog)) + (source (origin + (method url-fetch) + (uri (pypi-uri "python2-pythondialog" version)) + (sha256 + (base32 + "0d8k7lxk50imdyx85lv8j98i4c93a71iwpapnl1506rpkbm9qvd9"))))))) + +(define-public python-configobj + (package + (name "python-configobj") + (version "5.0.6") + (source (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/c/configobj/" + "configobj-" version ".tar.gz")) + (sha256 + (base32 + "00h9rcmws03xvdlfni11yb60bz3kxfvsj6dg6nrpzj71f03nbxd2")) + ;; Patch setup.py so it looks for python-setuptools, which is + ;; required to parse the keyword 'install_requires' in setup.py. + (patches (search-patches "python-configobj-setuptools.patch")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (synopsis "Config file reading, writing and validation") + (description "ConfigObj is a simple but powerful config file reader and +writer: an ini file round tripper. Its main feature is that it is very easy to +use, with a straightforward programmer’s interface and a simple syntax for +config files.") + (home-page "https://github.com/DiffSK/configobj") + (license license:bsd-3))) + +(define-public python2-configobj + (package-with-python2 python-configobj)) + +(define-public python-configargparse + (package + (name "python-configargparse") + (version "0.12.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "ConfigArgParse" version)) + (sha256 + (base32 + "0fgkiqh6r3rbkdq3k8c48m85g52k96686rw3a6jg4lcncrkpvk98")))) + (build-system python-build-system) + (native-inputs + `(("python-pyyaml" ,python-pyyaml))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Bypass setuptools-shim because one test relies on "setup.py" + ;; being the first argument passed to the python call. + ;; + ;; NOTE: Many tests do not run because they rely on Python's + ;; built-in test.test_argparse, but we remove the unit tests from + ;; our Python installation. + (invoke "python" "setup.py" "test")))))) + (synopsis "Replacement for argparse") + (description "A drop-in replacement for argparse that allows options to also +be set via config files and/or environment variables.") + (home-page "https://github.com/bw2/ConfigArgParse") + (license license:expat))) + +(define-public python2-configargparse + (package-with-python2 python-configargparse)) + +(define-public python-argparse-manpage + (package + (name "python-argparse-manpage") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "argparse-manpage" version)) + (sha256 + (base32 + "0blh31zns68anina9lba5wh81d1414s97p60zw5l0d0shhh0wj5p")))) + (build-system python-build-system) + (home-page "https://github.com/praiskup/argparse-manpage") + (synopsis "Build manual page from Python's ArgumentParser object") + (description + "This package provides tools to build manual pages from Python's +@code{ArgumentParser} object.") + (license license:asl2.0))) + +(define-public python2-contextlib2 + (package + (name "python2-contextlib2") + (version "0.5.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "contextlib2" version)) + (sha256 + (base32 + "0j6ad6lwwyc9kv71skj098v5l7x5biyj2hs4lc5x1kcixqcr97sh")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "python" "test_contextlib2.py" "-v")))))) + (native-inputs + `(("python2-unittest2" ,python2-unittest2))) + (home-page "http://contextlib2.readthedocs.org/") + (synopsis "Tools for decorators and context managers") + (description "This module is primarily a backport of the Python +3.2 contextlib to earlier Python versions. Like contextlib, it +provides utilities for common tasks involving decorators and context +managers. It also contains additional features that are not part of +the standard library.") + (license license:psfl))) + +(define-public python-texttable + (package + (name "python-texttable") + (version "0.8.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "texttable" version)) + (sha256 + (base32 + "1liiiydgkg37i46a418aw19fyf6z3ds51wdwwpyjbs12x0phhf4a")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; no tests + (home-page "https://github.com/foutaise/texttable/") + (synopsis "Python module for creating simple ASCII tables") + (description "Texttable is a Python module for creating simple ASCII +tables.") + (license license:lgpl2.1+))) + +(define-public python2-texttable + (package-with-python2 python-texttable)) + +(define-public python-atomicwrites + (package + (name "python-atomicwrites") + (version "1.1.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "atomicwrites" version)) + (sha256 + (base32 + "11bm90fwm2avvf4f3ib8g925w7jr4m11vcsinn1bi6ns4bm32214")))) + (build-system python-build-system) + (synopsis "Atomic file writes in Python") + (description "Library for atomic file writes using platform dependent tools +for atomic file system operations.") + (home-page "https://github.com/untitaker/python-atomicwrites") + (license license:expat))) + +(define-public python2-atomicwrites + (package-with-python2 python-atomicwrites)) + +(define-public python-click-threading + (package + (name "python-click-threading") + (version "0.4.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "click-threading" version)) + (sha256 + (base32 + "1rsxc2fbkxlhwhlmxsdjzq3spn284l6rvjfcz9mbb17ibgdgmc5j")))) + (build-system python-build-system) + (propagated-inputs + `(("python-click" ,python-click))) + (synopsis "Utilities for multithreading in Click") + (description "This package provides utilities for multithreading in Click +applications.") + (home-page "https://github.com/click-contrib/click-threading") + (license license:expat))) + +(define-public python-click-log + (package + (name "python-click-log") + (version "0.3.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "click-log" version)) + (sha256 + (base32 + "091i03bhxyzsdbc6kilxhivfda2f8ymz3b33xa6cj5kbzjiirz8n")))) + (build-system python-build-system) + (propagated-inputs + `(("python-click" ,python-click))) + (synopsis "Logging for click applications") + (description "This package provides a Python library for logging Click +applications.") + (home-page "https://github.com/click-contrib/click-log") + (license license:expat))) + +(define-public python-apipkg + (package + (name "python-apipkg") + (version "1.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "apipkg" version)) + (sha256 + (base32 + "1iks5701qnp3dlr3q1d9qm68y2plp2m029irhpz92a44psfkjf1f")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (synopsis "Namespace control and lazy-import mechanism") + (description "With apipkg you can control the exported namespace of a Python +package and greatly reduce the number of imports for your users. It is a small +pure Python module that works on virtually all Python versions.") + (home-page "https://github.com/pytest-dev/apipkg") + (license license:expat))) + +(define-public python2-apipkg + (package-with-python2 python-apipkg)) + +(define-public python-execnet + (package + (name "python-execnet") + (version "1.4.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "execnet" version)) + (sha256 + (base32 + "1rpk1vyclhg911p3hql0m0nrpq7q7mysxnaaw6vs29cpa6kx8vgn")))) + (build-system python-build-system) + (arguments + `(;; 2 failed, 275 passed, 670 skipped, 4 xfailed + ;; The two test failures are caused by the lack of an `ssh` executable. + ;; The test suite can be run with pytest after the 'install' phase. + #:tests? #f)) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-apipkg" ,python-apipkg))) + (synopsis "Rapid multi-Python deployment") + (description "Execnet provides a share-nothing model with +channel-send/receive communication for distributing execution across many +Python interpreters across version, platform and network barriers. It has a +minimal and fast API targeting the following uses: +@enumerate +@item distribute tasks to (many) local or remote CPUs +@item write and deploy hybrid multi-process applications +@item write scripts to administer multiple environments +@end enumerate") + (home-page "http://codespeak.net/execnet/") + (license license:expat))) + +(define-public python2-execnet + (package-with-python2 python-execnet)) + +(define-public python-icalendar + (package + (name "python-icalendar") + (version "4.0.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "icalendar" version)) + (sha256 + (base32 + "0mk3dk1dxkcm46jy48v27j2w2349iv4sbimqj1yb5js43mx49hh7")))) + (build-system python-build-system) + (propagated-inputs + `(("python-dateutil" ,python-dateutil) + ("python-pytz" ,python-pytz))) + (synopsis "Python library for parsing iCalendar files") + (description "The icalendar package is a parser/generator of iCalendar +files for use with Python.") + (home-page "https://github.com/collective/icalendar") + (license license:bsd-2))) + +(define-public python-sphinxcontrib-newsfeed + (package + (name "python-sphinxcontrib-newsfeed") + (version "0.1.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "sphinxcontrib-newsfeed" version)) + (sha256 + (base32 + "1d7gam3mn8v4in4p16yn3v10vps7nnaz6ilw99j4klij39dqd37p")))) + (arguments '(#:tests? #f)) ; No tests. + (build-system python-build-system) + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (synopsis "News Feed extension for Sphinx") + (description "Sphinxcontrib-newsfeed is an extension for adding a simple +Blog, News or Announcements section to a Sphinx website.") + (home-page "https://bitbucket.org/prometheus/sphinxcontrib-newsfeed") + (license license:bsd-2))) + +(define-public python-args + (package + (name "python-args") + (version "0.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "args" version)) + (sha256 + (base32 + "057qzi46h5dmxdqknsbrssn78lmqjlnm624iqdhrnpk26zcbi1d7")))) + (build-system python-build-system) + (home-page "https://github.com/kennethreitz/args") + (synopsis "Command-line argument parser") + (description + "This library provides a Python module to parse command-line arguments.") + (license license:bsd-3))) + +(define-public python2-args + (package-with-python2 python-args)) + +(define-public python-clint + (package + (name "python-clint") + (version "0.5.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "clint" version)) + (sha256 + (base32 + "1an5lkkqk1zha47198p42ji3m94xmzx1a03dn7866m87n4r4q8h5")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "py.test" "-v")))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-args" ,python-args))) + (home-page "https://github.com/kennethreitz/clint") + (synopsis "Command-line interface tools") + (description + "Clint is a Python module filled with a set of tools for developing +command-line applications, including tools for colored and indented +output, progress bar display, and pipes.") + (license license:isc))) + +(define-public python2-clint + (package-with-python2 python-clint)) + +(define-public python-astor + (package + (name "python-astor") + (version "0.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "astor" version)) + (sha256 + (base32 + "1fdafq5hkis1fxqlmhw0sn44zp2ar46nxhbc22cvwg7hsd8z5gsa")))) + (build-system python-build-system) + (home-page "https://github.com/berkerpeksag/astor") + (synopsis "Read and write Python ASTs") + (description + "Astor is designed to allow easy manipulation of Python source via the +Abstract Syntax Tree.") + (license license:bsd-3))) + +(define-public python2-astor + (package-with-python2 python-astor)) + +(define-public python-rply + (package + (name "python-rply") + (version "0.7.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "rply" version)) + (sha256 + (base32 + "0lv428895zxsz43968qx0q9bimwqnfykndz4dpjbq515w2gvzhjh")))) + (build-system python-build-system) + (propagated-inputs + `(("python-appdirs" ,python-appdirs))) + (home-page "https://github.com/alex/rply") + (synopsis "Parser generator for Python") + (description + "This package provides a pure Python based parser generator, that also +works with RPython. It is a more-or-less direct port of David Bazzley's PLY, +with a new public API, and RPython support.") + (license license:bsd-3))) + +(define-public python2-rply + (package-with-python2 python-rply)) + +(define-public python-hy + (package + (name "python-hy") + (version "0.13.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "hy" version)) + (sha256 + (base32 + "19sfymaksx9jhksfnb15ahid46mzrhdfzz6yy2craz2qnzvpmky8")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Tests require write access to HOME. + (setenv "HOME" "/tmp") + (invoke "nosetests")))))) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-nose" ,python-nose))) + (propagated-inputs + `(("python-astor" ,python-astor) + ("python-clint" ,python-clint) + ("python-rply" ,python-rply))) + (home-page "http://hylang.org/") + (synopsis "Lisp frontend to Python") + (description + "Hy is a dialect of Lisp that's embedded in Python. Since Hy transforms +its Lisp code into the Python Abstract Syntax Tree, you have the whole world of +Python at your fingertips, in Lisp form.") + (license license:expat))) + +(define-public python2-hy + (package-with-python2 python-hy)) + +(define-public python2-functools32 + (package + (name "python2-functools32") + (version "3.2.3-2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "functools32" version)) + (sha256 + (base32 + "0v8ya0b58x47wp216n1zamimv4iw57cxz3xxhzix52jkw3xks9gn")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:tests? #f)) ; no test target + (home-page "https://github.com/MiCHiLU/python-functools32") + (synopsis + "Backport of the functools module from Python 3.2.3") + (description + "This package is a backport of the @code{functools} module from Python +3.2.3 for use with older versions of Python and PyPy.") + (license license:expat))) + +(define-public python2-subprocess32 + (package + (name "python2-subprocess32") + (version "3.2.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "subprocess32" version)) + (sha256 + (base32 + "14350dhhlhyz5gqzi3lihn9m6lvskx5mcb20srx1kgsk9i50li8y")) + (patches + (search-patches "python2-subprocess32-disable-input-test.patch")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + ;; The test suite fails with Python > 2.7.13: + ;; import test.support + ;; ImportError: No module named support + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-/bin/sh + (lambda _ + (substitute* '("subprocess32.py" + "test_subprocess32.py") + (("/bin/sh") (which "sh"))) + #t))))) + (home-page "https://github.com/google/python-subprocess32") + (synopsis "Backport of the subprocess module from Python 3.2") + (description + "This is a backport of the @code{subprocess} standard library module +from Python 3.2 and 3.3 for use on Python 2. It includes bugfixes and some +new features. On POSIX systems it is guaranteed to be reliable when used +in threaded applications. It includes timeout support from Python 3.3 but +otherwise matches 3.2’s API.") + (license license:psfl))) + +(define-public python2-futures + (package + (name "python2-futures") + (version "3.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "futures" version)) + (sha256 + (base32 + "0rdjmmsab550kxsssdq49jcniz77zlkpw4pvi9hvib3lsskjmh4y")))) + (build-system python-build-system) + (arguments `(#:python ,python-2 + ;; FIXME: Python 2.7.14 moved the test.support library, + ;; but our package has not yet been adjusted. Enable + ;; tests when the python2 package has been fixed. + #:tests? #f)) + (home-page "https://github.com/agronholm/pythonfutures") + (synopsis + "Backport of the concurrent.futures package from Python 3.2") + (description + "The concurrent.futures module provides a high-level interface for +asynchronously executing callables. This package backports the +concurrent.futures package from Python 3.2") + (license license:bsd-3))) + +(define-public python-promise + (package + (name "python-promise") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "promise" version)) + (sha256 + (base32 + "1k19ms8l3d5jzjh557rgkxb5sg4mqgfc315rn4hx1z3n8qq6lr3h")))) + (build-system python-build-system) + ;; Tests wants python-futures, which is a python2 only program, and + ;; can't be found by python-promise at test time. + (arguments `(#:tests? #f)) + (home-page "https://github.com/syrusakbary/promise") + (synopsis "Promises/A+ implementation for Python") + (description + "Promises/A+ implementation for Python") + (properties `((python2-variant . ,(delay python2-promise)))) + (license license:expat))) + +(define-public python2-promise + (let ((promise (package-with-python2 + (strip-python2-variant python-promise)))) + (package (inherit promise) + (arguments (substitute-keyword-arguments (package-arguments promise) + ((#:tests? _) #t))) + (native-inputs + `(("python2-futures" ,python2-futures) + ("python2-pytest" ,python2-pytest) + ,@(package-native-inputs promise)))))) + +(define-public python-colorama + (package + (name "python-colorama") + (version "0.3.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "colorama" version)) + (sha256 + (base32 + "1wd1szk0z3073ghx26ynw43gnc140ibln1safgsis6s6z3s25ss8")))) + (build-system python-build-system) + (synopsis "Colored terminal text rendering for Python") + (description "Colorama is a Python library for rendering colored terminal +text.") + (home-page "https://pypi.python.org/pypi/colorama") + (license license:bsd-3))) + +(define-public python2-colorama + (package-with-python2 python-colorama)) + +(define-public python-rsa + (package + (name "python-rsa") + (version "3.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rsa" version)) + (sha256 + (base32 + "1dcxvszbikgzh99ybdc7jq0zb9wspy2ds8z9mjsqiyv3q884xpr5")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pyasn1" ,python-pyasn1))) + (synopsis "Pure-Python RSA implementation") + (description "Python-RSA is a pure-Python RSA implementation. It supports +encryption and decryption, signing and verifying signatures, and key +generation according to PKCS#1 version 1.5. It can be used as a Python +library as well as on the command line.") + (home-page "https://stuvel.eu/rsa") + (license license:asl2.0))) + +(define-public python2-rsa + (package-with-python2 python-rsa)) + +(define-public python-pluggy + (package + (name "python-pluggy") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pluggy" version)) + (sha256 + (base32 + "1qbn70mksmr03hac6jgp6fiqc4l7859z8dchx2x950vhlij87swm")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + (synopsis "Plugin and hook calling mechanism for Python") + (description "Pluggy is an extraction of the plugin manager as used by +Pytest but stripped of Pytest specific details.") + (home-page "https://pypi.python.org/pypi/pluggy") + (license license:expat))) + +(define-public python2-pluggy + (package-with-python2 python-pluggy)) + +(define-public python-tox + (package + (name "python-tox") + (version "2.8.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tox" version)) + (sha256 + (base32 + "1drp6mwm8wdypjym15ia8lwjxbhcksb9vzxg4ay5dh4ji57by2ny")))) + (build-system python-build-system) + (arguments + ;; FIXME: Tests require pytest-timeout, which itself requires + ;; pytest>=2.8.0 for installation. + '(#:tests? #f)) + (propagated-inputs + `(("python-pluggy" ,python-pluggy) ; >=0.3.0,<0.4.0 + ("python-py" ,python-py) + ("python-virtualenv" ,python-virtualenv))) + (native-inputs + `(; FIXME: Missing: ("python-pytest-timeout" ,python-pytest-timeout) + ("python-pytest" ,python-pytest) ; >= 2.3.5 + ("python-setuptools-scm" ,python-setuptools-scm))) + (home-page "http://tox.testrun.org/") + (synopsis "Virtualenv-based automation of test activities") + (description "Tox is a generic virtualenv management and test command line +tool. It can be used to check that a package installs correctly with +different Python versions and interpreters, or run tests in each type of +supported environment, or act as a frontend to continuous integration +servers.") + (license license:expat))) + +(define-public python2-tox + (package-with-python2 python-tox)) + +(define-public python-jmespath + (package + (name "python-jmespath") + (version "0.9.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jmespath" version)) + (sha256 + (base32 + "0r7wc7fsxmlwzxx9j1j7rms06c6xs6d4sysirdhz1jk2mb4x90ba")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (synopsis "JSON Matching Expressions") + (description "JMESPath (pronounced “james path”) is a Python library that +allows one to declaratively specify how to extract elements from a JSON +document.") + (home-page "https://github.com/jmespath/jmespath.py") + (license license:expat))) + +(define-public python2-jmespath + (package-with-python2 python-jmespath)) + +(define-public python-botocore + (package + (name "python-botocore") + (version "1.8.43") + (source + (origin + (method url-fetch) + (uri (pypi-uri "botocore" version)) + (sha256 + (base32 + "12cqpbnz3vfv41mp9admvciw7bc7hz57sjpqs2bxaw9wnfmbw5lg")))) + (build-system python-build-system) + (arguments + ;; FIXME: Many tests are failing. + '(#:tests? #f)) + (propagated-inputs + `(("python-dateutil" ,python-dateutil) + ("python-docutils" ,python-docutils) + ("python-jmespath" ,python-jmespath))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose) + ("behave" ,behave) + ("python-tox" ,python-tox) + ("python-wheel" ,python-wheel))) + (home-page "https://github.com/boto/botocore") + (synopsis "Low-level interface to AWS") + (description "Botocore is a Python library that provides a low-level +interface to the Amazon Web Services (AWS) API.") + (license license:asl2.0))) + +(define-public python2-botocore + (package-with-python2 python-botocore)) + +(define-public python-xdo + (package + (name "python-xdo") + (version "0.3") + (source (origin + (method url-fetch) + (uri (string-append + "http://http.debian.net/debian/pool/main/p/python-xdo/" + "python-xdo_" version ".orig.tar.gz")) + (sha256 + (base32 + "1vqh1n5yy5dhnq312kwrl90fnck4v26is3lq3lxdvcn60vv19da0")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'install 'patch-libxdo-path + ;; Hardcode the path of dynamically loaded libxdo library. + (lambda* (#:key inputs #:allow-other-keys) + (let ((libxdo (string-append + (assoc-ref inputs "xdotool") + "/lib/libxdo.so"))) + (substitute* "xdo/_xdo.py" + (("find_library\\(\"xdo\"\\)") + (simple-format #f "\"~a\"" libxdo))) + #t)))) + #:tests? #f)) ; no tests provided + (propagated-inputs + `(("python-six" ,python-six))) + (inputs + `(("xdotool" ,xdotool) + ("libX11" ,libx11))) + (home-page "https://tracker.debian.org/pkg/python-xdo") + (synopsis "Python library for simulating X11 keyboard/mouse input") + (description "Provides bindings to libxdo for manipulating X11 via simulated +input. (Note that this is mostly a legacy library; you may wish to look at +python-xdo for newer bindings.)") + (license license:bsd-3))) + +(define-public python2-xdo + (package-with-python2 python-xdo)) + +(define-public python-mako + (package + (name "python-mako") + (version "1.0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Mako" version)) + (sha256 + (base32 + "1bi5gnr8r8dva06qpyx4kgjc6spm2k1y908183nbbaylggjzs0jf")))) + (build-system python-build-system) + (propagated-inputs + `(("python-markupsafe" ,python-markupsafe))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose) + ("python-pytest" ,python-pytest))) + (home-page "http://www.makotemplates.org/") + (synopsis "Templating language for Python") + (description "Mako is a templating language for Python that compiles +templates into Python modules.") + (license license:expat))) + +(define-public python2-mako + (package-with-python2 python-mako)) + +(define-public python-waitress + (package + (name "python-waitress") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "waitress" version)) + (patches (search-patches "python-waitress-fix-tests.patch")) + (sha256 + (base32 + "1a85gyji0kajc3p0s1pwwfm06w4wfxjkvvl4rnrz3h164kbd6g6k")))) + (build-system python-build-system) + (home-page "https://github.com/Pylons/waitress") + (synopsis "Waitress WSGI server") + (description "Waitress is meant to be a production-quality pure-Python WSGI +server with very acceptable performance.") + (license license:zpl2.1))) + +(define-public python2-waitress + (package-with-python2 python-waitress)) + +(define-public python-pyquery + (package + (name "python-pyquery") + (version "1.2.17") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyquery" version)) + (sha256 + (base32 + "1xia20wm0vx5dk85kcwgh13bylz8qh47ffjxssd2586r60xi783a")))) + (build-system python-build-system) + (native-inputs + `(("python-webob" ,python-webob) + ("python-webtest" ,python-webtest))) + (propagated-inputs + `(("python-lxml" ,python-lxml) + ("python-cssselect" ,python-cssselect))) + (home-page "https://github.com/gawel/pyquery") + (synopsis "Make jQuery-like queries on xml documents") + (description "pyquery allows you to make jQuery queries on xml documents. +The API is as much as possible the similar to jQuery. pyquery uses lxml for +fast xml and html manipulation.") + (license license:bsd-3))) + +(define-public python2-pyquery + (package-with-python2 python-pyquery)) + +(define-public python-anyjson + (package + (name "python-anyjson") + (version "0.3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "anyjson" version)) + (sha256 + (base32 + "1fjph4alvcscsl5d4b6qpv1yh31jy05jxi1l0xff7lws7j32v09p")))) + (build-system python-build-system) + (arguments + `(;; We could possibly get tests working, but on Python 3 it's not so easy. + ;; Very strangely, 2to3 is run *during setup.py install* (or bdist, or + ;; whatever) so this transformation needs to be done before the tests + ;; can be run. Maybe we could add a build step to transform beforehand + ;; but it could be annoying/difficult. + ;; We can enable tests for the Python 2 version, though, and do below. + #:tests? #f)) + (home-page "https://bitbucket.org/runeh/anyjson/") + (synopsis + "Wraps best available JSON implementation in a common interface") + (description + "Anyjson loads whichever is the fastest JSON module installed +and provides a uniform API regardless of which JSON implementation is used.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-anyjson)))))) + +(define-public python2-anyjson + (let ((anyjson (package-with-python2 + (strip-python2-variant python-anyjson)))) + (package + (inherit anyjson) + (arguments `(;; Unlike the python 3 variant, we do run tests. See above! + #:tests? #t + ,@(package-arguments anyjson))) + (native-inputs `(("python2-nose" ,python2-nose)))))) + +(define-public python-amqp + (package + (name "python-amqp") + (version "2.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "amqp" version)) + (sha256 + (base32 + "1sv600dgqwpimr6i1g59y9hpn50mc236gdqkr7zin13kvlpx0g87")))) + (build-system python-build-system) + (native-inputs + `(("python-case" ,python-case) + ("python-pytest-sugar" ,python-pytest-sugar) + ("python-mock" ,python-mock))) + (propagated-inputs + `(("python-vine" ,python-vine))) + (home-page "https://github.com/celery/py-amqp") + (synopsis + "Low-level AMQP client for Python (fork of amqplib)") + (description + "This is a fork of amqplib which was originally written by Barry Pederson. +It is maintained by the Celery project, and used by kombu as a pure python +alternative when librabbitmq is not available.") + (license license:lgpl2.1+) + (properties `((python2-variant . ,(delay python2-amqp)))))) + +(define-public python2-amqp + (let ((amqp (package-with-python2 + (strip-python2-variant python-amqp)))) + (package + (inherit amqp) + (arguments `(;; Tries to run coverage tests with nose-cover3, which seems + ;; unmaintained. Weirdly, does not do this on the python 3 + ;; version? + #:tests? #f + ,@(package-arguments amqp)))))) + +(define-public python-txamqp + (package + (name "python-txamqp") + (version "0.8.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "txAMQP" version)) + (sha256 + (base32 + "0jd9864k3csc06kipiwzjlk9mq4054s8kzk5q1cfnxj8572s4iv4")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six) + ("python-twisted" ,python-twisted))) + (home-page "https://github.com/txamqp/txamqp") + (synopsis "Communicate with AMQP peers and brokers using Twisted") + (description + "This package provides a Python library for communicating with AMQP peers +and brokers using the asynchronous networking framework Twisted. It contains +all the necessary code to connect, send and receive messages to/from an +AMQP-compliant peer or broker (Qpid, OpenAMQ, RabbitMQ) using Twisted. It +also includes support for using Thrift RPC over AMQP in Twisted +applications.") + (license license:asl2.0))) + +(define-public python2-txamqp + (package-with-python2 python-txamqp)) + +(define-public python-kombu + (package + (name "python-kombu") + (version "4.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "kombu" version)) + (sha256 + (base32 + "15k8f7mzqr049sg9vi48m19vjykviafk3f0p5xzgw9by0x0kyxjj")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-case" ,python-case) + ("python-pyro4" ,python-pyro4) + ("python-pytest-sugar" ,python-pytest-sugar) + ("python-pytz" ,python-pytz))) + (propagated-inputs + `(("python-anyjson" ,python-anyjson) + ("python-amqp" ,python-amqp) + ("python-redis" ,python-redis))) + (home-page "https://kombu.readthedocs.io") + (synopsis "Message passing library for Python") + (description "The aim of Kombu is to make messaging in Python as easy as +possible by providing an idiomatic high-level interface for the AMQ protocol, +and also provide proven and tested solutions to common messaging problems. +AMQP is the Advanced Message Queuing Protocol, an open standard protocol for +message orientation, queuing, routing, reliability and security, for which the +RabbitMQ messaging server is the most popular implementation.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-kombu)))))) + +(define-public python2-kombu + (let ((kombu (package-with-python2 + (strip-python2-variant python-kombu)))) + (package + (inherit kombu) + (arguments `(;; FIXME: 'TestTransport.test_del_sync' fails on python2. + ;; It works fine on the python3 variant. + #:tests? #f + ,@(package-arguments kombu))) + (native-inputs `(("python2-unittest2" ,python2-unittest2) + ,@(package-native-inputs kombu)))))) + +(define-public python-billiard + (package + (name "python-billiard") + (version "3.5.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "billiard" version)) + (sha256 + (base32 + "03msmapj3s5zgqk87d646mafz7a01h5bm2wijalgpi0s80ks5na2")))) + (build-system python-build-system) + (native-inputs + `(("python-case" ,python-case) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/celery/billiard") + (synopsis + "Python multiprocessing fork with improvements and bugfixes") + (description + "Billiard is a fork of the Python 2.7 multiprocessing package. The +multiprocessing package itself is a renamed and updated version of R Oudkerk's +pyprocessing package. This standalone variant is intended to be compatible with +Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-billiard)))))) + +(define-public python2-billiard + (let ((billiard (package-with-python2 + (strip-python2-variant python-billiard)))) + (package + (inherit billiard) + (native-inputs `(("python2-unittest2" ,python2-unittest2) + ("python2-mock" ,python2-mock) + ,@(package-native-inputs billiard)))))) + +(define-public python-celery + (package + (name "python-celery") + (version "4.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "celery" version)) + (sha256 + (base32 + "0y66rz7z8dfcgs3s0qxmdddlaq57bzbgxgfz896nbp14grkv9nkp")))) + (build-system python-build-system) + (arguments + '(;; TODO The tests fail with Python 3.7 + ;; https://github.com/celery/celery/issues/4849 + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-requirements + (lambda _ + (substitute* "requirements/test.txt" + (("pytest>=3\\.0,<3\\.3") + "pytest>=3.0")) + #t))))) + (native-inputs + `(("python-case" ,python-case) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-pytz" ,python-pytz) + ("python-billiard" ,python-billiard) + ("python-kombu" ,python-kombu))) + (home-page "https://celeryproject.org") + (synopsis "Distributed Task Queue") + (description "Celery is an asynchronous task queue/job queue based on +distributed message passing. It is focused on real-time operation, but +supports scheduling as well. The execution units, called tasks, are executed +concurrently on a single or more worker servers using multiprocessing, +Eventlet, or gevent. Tasks can execute asynchronously (in the background) or +synchronously (wait until ready).") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-celery)))))) + +(define-public python2-celery + (let ((celery (package-with-python2 + (strip-python2-variant python-celery)))) + (package + (inherit celery) + (native-inputs `(("python2-unittest2" ,python2-unittest2) + ("python2-mock" ,python2-mock) + ,@(package-native-inputs celery)))))) + +(define-public python-translitcodec + (package + (name "python-translitcodec") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "translitcodec" version)) + (sha256 + (base32 + "10x6pvblkzky1zhjs8nmx64nb9jdzxad4bxhq4iwv0j4z2aqjnki")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; no tests provided + (home-page + "https://github.com/claudep/translitcodec") + (synopsis + "Unicode to 8-bit charset transliteration codec") + (description + "This package contains codecs for transliterating ISO 10646 texts into +best-effort representations using smaller coded character sets (ASCII, +ISO 8859, etc.).") + (license license:expat))) + +(define-public python2-translitcodec + (package-with-python2 python-translitcodec)) + +(define-public python-editor + (package + (name "python-editor") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-editor" version)) + (sha256 + (base32 + "1ypnpgvzpkbwsg4rdvy4sy51j28b5xq9v8pnkwxncn07vqz06p7n")))) + (build-system python-build-system) + (home-page + "https://github.com/fmoo/python-editor") + (synopsis + "Programmatically open an editor, capture the result") + (description + "python-editor is a library that provides the editor module for +programmatically interfacing with your system's $EDITOR.") + (license license:asl2.0))) + +(define-public python2-editor + (package-with-python2 python-editor)) + +(define-public python-sphinxcontrib-programoutput + (package + (name "python-sphinxcontrib-programoutput") + (version "0.10") + (source (origin + (method url-fetch) + (uri (pypi-uri "sphinxcontrib-programoutput" version)) + (sha256 + (base32 + "153hhnlbx4688zj9wd64819ps5znc2jlyp5crkgzvn5hxgy99vpx")))) + (build-system python-build-system) + (arguments + ;; FIXME: Many tests are failing and the upstream is gone. + '(#:tests? #f)) + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (synopsis "Sphinx extension to include program output") + (description "A Sphinx extension to literally insert the output of arbitrary +commands into documents, helping you to keep your command examples up to date.") + (home-page "https://github.com/lunaryorn/sphinxcontrib-programoutput") + (license license:bsd-2))) + +(define-public python2-sphinxcontrib-programoutput + (package-with-python2 python-sphinxcontrib-programoutput)) + +(define-public python-sphinx-repoze-autointerface + (package + (name "python-sphinx-repoze-autointerface") + (version "0.8") + (source (origin + (method url-fetch) + (uri (pypi-uri "repoze.sphinx.autointerface" version)) + (sha256 + (base32 + "08ycivzf7bh4a1zcyp31hbyqs1b2c9r26raa3vxjwwmbfqr3iw4f")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; No tests. + (propagated-inputs + `(("python-sphinx" ,python-sphinx) + ("python-zope-interface" ,python-zope-interface))) + (synopsis "Auto-generate Sphinx API docs from Zope interfaces") + (description "This package defines an extension for the Sphinx documentation +system. The extension allows generation of API documentation by +introspection of @code{zope.interface} instances in code.") + (home-page "https://github.com/repoze/repoze.sphinx.autointerface") + (license license:repoze))) + +(define-public python2-sphinx-repoze-autointerface + (package-with-python2 python-sphinx-repoze-autointerface)) + +(define-public python-vobject + (package + (name "python-vobject") + (version "0.9.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "vobject" version)) + (sha256 + (base32 + "0hqjgf3ay1m5w1c0k00g5yfpdz1zni5qnr5rh9b8fg9hjvhwlmhg")))) + (build-system python-build-system) + (arguments + '(;; The test suite relies on some non-portable Windows interfaces. + #:tests? #f)) + (propagated-inputs + `(("python-dateutil" ,python-dateutil) + ("python-pyicu" ,python-pyicu))) + (synopsis "Parse and generate vCard and vCalendar files") + (description "Vobject is intended to be a full featured Python package for +parsing and generating vCard and vCalendar files. Currently, iCalendar files +are supported and well tested. vCard 3.0 files are supported, and all data +should be imported, but only a few components are understood in a sophisticated +way.") + (home-page "http://eventable.github.io/vobject/") + (license license:asl2.0))) + +(define-public python2-vobject + (package-with-python2 python-vobject)) + +(define-public python-munkres + (package + (name "python-munkres") + (version "1.0.8") + (source (origin + (method url-fetch) + (uri (pypi-uri "munkres" version)) + (sha256 + (base32 + "0mbspx4zv8id4x6pim6ybsa1xh96qwpbqj7skbqz4c9c9nf1lpqq")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; no test suite + (home-page "http://software.clapper.org/munkres/") + (synopsis "Implementation of the Munkres algorithm") + (description "The Munkres module provides an implementation of the Munkres +algorithm (also called the Hungarian algorithm or the Kuhn-Munkres algorithm), +useful for solving the Assignment Problem.") + (license license:bsd-3))) + +(define-public python2-munkres + (package-with-python2 python-munkres)) + +(define-public python-whoosh + (package + (name "python-whoosh") + (version "2.7.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Whoosh" version)) + (sha256 + (base32 + "10qsqdjpbc85fykc1vgcs8xwbgn4l2l52c8d83xf1q59pwyn79bw")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://bitbucket.org/mchaput/whoosh") + (synopsis "Full text indexing, search, and spell checking library") + (description + "Whoosh is a fast, pure-Python full text indexing, search, and spell +checking library.") + (license license:bsd-2))) + +(define-public python2-whoosh + (let ((whoosh (package-with-python2 (strip-python2-variant python-whoosh)))) + (package (inherit whoosh) + (propagated-inputs + `(("python2-backport-ssl-match-hostname" + ,python2-backport-ssl-match-hostname) + ,@(package-propagated-inputs whoosh)))))) + +(define-public python-pathlib + (package + (name "python-pathlib") + (version "1.0.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "pathlib" version)) + (sha256 + (base32 + "17zajiw4mjbkkv6ahp3xf025qglkj0805m9s41c45zryzj6p2h39")))) + (build-system python-build-system) + ;; The tests depend on the internal "test" module, which does not provide + ;; a stable interface. + (arguments `(#:tests? #f)) + (home-page "https://pathlib.readthedocs.org/") + (synopsis "Object-oriented file system paths") + (description "Pathlib offers a set of classes to handle file system paths. +It offers the following advantages over using string objects: + +@enumerate +@item No more cumbersome use of os and os.path functions. Everything can +be done easily through operators, attribute accesses, and method calls. +@item Embodies the semantics of different path types. For example, +comparing Windows paths ignores casing. +@item Well-defined semantics, eliminating any inconsistencies or +ambiguities (forward vs. backward slashes, etc.). +@end enumerate + +Note: In Python 3.4, pathlib is now part of the standard library. For other +Python versions please consider python-pathlib2 instead, which tracks the +standard library module. This module (python-pathlib) isn't maintained +anymore.") + (license license:expat))) + +(define-public python2-pathlib + (package-with-python2 python-pathlib)) + +(define-public python2-pathlib2 + (package + (name "python2-pathlib2") + (version "2.3.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "pathlib2" version)) + (sha256 + (base32 + "10yb0iv5x2hs631rcppkhbddx799d3h8pcwmkbh2a66ns3w71ccf")))) + (build-system python-build-system) + ;; We only need the the Python 2 variant, since for Python 3 our minimum + ;; version is 3.4 which already includes this package as part of the + ;; standard library. + (arguments + `(#:python ,python-2)) + (propagated-inputs + `(("python2-scandir" ,python2-scandir) + ("python2-six" ,python2-six))) + (home-page "https://pypi.python.org/pypi/pathlib2/") + (synopsis "Object-oriented file system paths - backport of standard +pathlib module") + (description "The goal of pathlib2 is to provide a backport of standard +pathlib module which tracks the standard library module, so all the newest +features of the standard pathlib can be used also on older Python versions. + +Pathlib offers a set of classes to handle file system paths. It offers the +following advantages over using string objects: + +@enumerate +@item No more cumbersome use of os and os.path functions. Everything can +be done easily through operators, attribute accesses, and method calls. +@item Embodies the semantics of different path types. For example, +comparing Windows paths ignores casing. +@item Well-defined semantics, eliminating any inconsistencies or +ambiguities (forward vs. backward slashes, etc.). +@end enumerate") + (license license:expat))) + +(define-public python2-pathlib2-bootstrap + (hidden-package + (package + (inherit python2-pathlib2) + (name "python2-pathlib2-bootstrap") + (propagated-inputs + `(("python2-scandir" ,python2-scandir) + ("python2-six" ,python2-six-bootstrap)))))) + +(define-public python-jellyfish + (package + (name "python-jellyfish") + (version "0.5.6") + (source (origin + (method url-fetch) + (uri (pypi-uri "jellyfish" version)) + (sha256 + (base32 + "1j9rplb16ba2prjj6mip46z0w9pnhnqpwgiwi0x93vnas14rlyl8")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/jamesturk/jellyfish") + (synopsis "Approximate and phonetic matching of strings") + (description "Jellyfish uses a variety of string comparison and phonetic +encoding algorithms to do fuzzy string matching.") + (license license:bsd-2) + (properties `((python2-variant . ,(delay python2-jellyfish)))))) + +(define-public python2-jellyfish + (let ((jellyfish (package-with-python2 + (strip-python2-variant python-jellyfish)))) + (package (inherit jellyfish) + (native-inputs `(("python2-unicodecsv" ,python2-unicodecsv) + ,@(package-native-inputs jellyfish)))))) + +(define-public python2-unicodecsv + (package + (name "python2-unicodecsv") + (version "0.14.1") + (source (origin + (method url-fetch) + ;; The test suite is not included in the PyPi release. + ;; https://github.com/jdunck/python-unicodecsv/issues/19 + (uri (string-append "https://github.com/jdunck/python-unicodecsv/" + "archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "087nqanfcyp6mlfbbr5lva5f3w6iz1bybls9xlrb8icmc474wh4w")))) + (build-system python-build-system) + (arguments + `(;; It supports Python 3, but Python 3 can already do Unicode CSV. + #:python ,python-2)) + (native-inputs + `(("python2-unittest2" ,python2-unittest2))) + (home-page "https://github.com/jdunck/python-unicodecsv") + (synopsis "Unicode CSV module for Python 2") + (description "Unicodecsv is a drop-in replacement for Python 2.7's CSV +module, adding support for Unicode strings.") + (license license:bsd-2))) + +(define-public python-rarfile + (package + (name "python-rarfile") + (version "2.8") + (source (origin + (method url-fetch) + (uri (pypi-uri "rarfile" version)) + (sha256 + (base32 + "0qfad483kcbga0bn4qmcz953xjk16r52fahiy46zzn56v80y89ra")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + ;; Many tests fail, but the installation proceeds. + (lambda _ (zero? (system* "make" "-C" "test" "test"))))))) + (native-inputs + `(("which" ,which))) ; required for tests + (propagated-inputs + `(("libarchive" ,libarchive))) + (home-page "https://github.com/markokr/rarfile") + (synopsis "RAR archive reader for Python") + (description "This is Python module for RAR archive reading. The interface +is made as zipfile like as possible.") + (license license:isc))) + +(define-public python2-rarfile + (package-with-python2 python-rarfile)) + +(define-public python-magic + (package + (name "python-magic") + (version "0.4.15") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-magic" version)) + (sha256 + (base32 + "1mgwig9pnzgkf86q9ji9pnc99bngms15lfszq5rgqb9db07mqxpk")) + (file-name (string-append name "-" version "-checkout")))) + (build-system python-build-system) + (arguments + ;; The tests are unreliable, so don't run them. The tests fail + ;; under Python3 because they were written for Python2 and + ;; contain import statements that do not work in Python3. One of + ;; the tests fails under Python2 because its assertions are + ;; overly stringent; it relies on comparing output strings which + ;; are brittle and can change depending on the version of + ;; libmagic being used and the system on which the test is + ;; running. In my case, under GuixSD 0.10.0, only one test + ;; failed, and it seems to have failed only because the version + ;; of libmagic that is packaged in Guix outputs a slightly + ;; different (but not wrong) string than the one that the test + ;; expected. + '(#:tests? #f + #:phases (modify-phases %standard-phases + ;; Replace a specific method call with a hard-coded + ;; path to the necessary libmagic.so file in the + ;; store. If we don't do this, then the method call + ;; will fail to find the libmagic.so file, which in + ;; turn will cause any application using + ;; python-magic to fail. + (add-before 'build 'hard-code-path-to-libmagic + (lambda* (#:key inputs #:allow-other-keys) + (let ((file (assoc-ref inputs "file"))) + (substitute* "magic.py" + (("ctypes.util.find_library\\('magic'\\)") + (string-append "'" file "/lib/libmagic.so'"))) + #t))) + (add-before 'install 'disable-egg-compression + (lambda _ + (let ((port (open-file "setup.cfg" "a"))) + (display "\n[easy_install]\nzip_ok = 0\n" + port) + (close-port port) + #t)))))) + (inputs + ;; python-magic needs to be able to find libmagic.so. + `(("file" ,file))) + (home-page + "https://github.com/ahupp/python-magic") + (synopsis + "File type identification using libmagic") + (description + "This module uses ctypes to access the libmagic file type +identification library. It makes use of the local magic database and +supports both textual and MIME-type output. Note that this module and +the python-file module both provide a \"magic.py\" file; these two +modules, which are different and were developed separately, both serve +the same purpose: to provide Python bindings for libmagic.") + (license license:expat))) + +(define-public python2-magic + (package-with-python2 python-magic)) + +(define-public python2-s3cmd + (package + (name "python2-s3cmd") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/s3tools/s3cmd/" version "/" + "s3cmd-" version ".tar.gz")) + (sha256 + (base32 + "0ki1rzhm5icvi9ry5jswi4b22yqwyj0d2wsqsgilwx6qhi7pjxa6")))) + (build-system python-build-system) + (arguments + ;; s3cmd is written for python2 only and contains no tests. + `(#:python ,python-2 + #:tests? #f)) + (propagated-inputs + `(("python2-dateutil" ,python2-dateutil) + ;; The python-file package also provides a magic.py module. + ;; This is an unfortunate state of affairs; however, s3cmd + ;; fails to install if it cannot find specifically the + ;; python-magic package. Thus we include it, instead of using + ;; python-file. Ironically, s3cmd sometimes works better + ;; without libmagic bindings at all: + ;; https://github.com/s3tools/s3cmd/issues/198 + ("python2-magic" ,python2-magic))) + (home-page "http://s3tools.org/s3cmd") + (synopsis "Command line tool for S3-compatible storage services") + (description + "S3cmd is a command line tool for uploading, retrieving and managing data +in storage services that are compatible with the Amazon Simple Storage +Service (S3) protocol, including S3 itself. It supports rsync-like backup, +GnuPG encryption, and more. It also supports management of Amazon's +CloudFront content delivery network.") + (license license:gpl2+))) + +(define-public python-pkgconfig + (package + (name "python-pkgconfig") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pkgconfig" version)) + (sha256 + (base32 + "107x2wmchlch8saixb488cgjz9n6inl38wi7nxkb942rbaapxiqb")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (inputs + `(("pkg-config" ,pkg-config))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'patch + ;; Hard-code the path to pkg-config. + (lambda _ + (substitute* "pkgconfig/pkgconfig.py" + (("cmd = 'pkg-config") + (string-append "cmd = '" (which "pkg-config")))) + #t)) + (replace 'check + (lambda _ + (invoke "nosetests" "test.py")))))) + (home-page "https://github.com/matze/pkgconfig") + (synopsis "Python interface for pkg-config") + (description "This module provides a Python interface to pkg-config. It +can be used to find all pkg-config packages, check if a package exists, +check if a package meets certain version requirements, query CFLAGS and +LDFLAGS and parse the output to build extensions with setup.py.") + (license license:expat))) + +(define-public python2-pkgconfig + (package-with-python2 python-pkgconfig)) + +(define-public python-bz2file + (package + (name "python-bz2file") + (version "0.98") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bz2file" version)) + (sha256 + (base32 + "126s53fkpx04f33a829yqqk8fj4png3qwg4m66cvlmhmwc8zihb4")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; Tests use deprecated python modules. + (home-page "https://github.com/nvawda/bz2file") + (synopsis "Read and write bzip2-compressed files") + (description + "Bz2file is a Python library for reading and writing bzip2-compressed +files. It contains a drop-in replacement for the I/O interface in the +standard library's @code{bz2} module, including features from the latest +development version of CPython that are not available in older releases.") + (license license:asl2.0))) + +(define-public python2-bz2file + (package-with-python2 python-bz2file)) + +(define-public python-future + (package + (name "python-future") + (version "0.16.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "future" version)) + (sha256 + (base32 + "1nzy1k4m9966sikp0qka7lirh8sqrsyainyf8rk97db7nwdfv773")))) + (build-system python-build-system) + ;; Many tests connect to the network or are otherwise flawed. + ;; https://github.com/PythonCharmers/python-future/issues/210 + (arguments + `(#:tests? #f)) + (home-page "http://python-future.org") + (synopsis "Single-source support for Python 3 and 2") + (description + "@code{python-future} is the missing compatibility layer between Python 2 and +Python 3. It allows you to use a single, clean Python 3.x-compatible codebase +to support both Python 2 and Python 3 with minimal overhead.") + (license license:expat))) + +(define-public python2-future + (package-with-python2 python-future)) + +(define-public python-cysignals + (package + (name "python-cysignals") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cysignals" version ".tar.bz2")) + (sha256 + (base32 + "14cbyd9znlz6cxy1s3g6v6dv5jj45hn27pywkidd9b1zanaysqc6")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython) + ("python-sphinx" ,python-sphinx))) + (inputs + `(("pari-gp" ,pari-gp))) + (arguments + `(#:modules ((guix build python-build-system) + ((guix build gnu-build-system) #:prefix gnu:) + (guix build utils)) + ;; FIXME: Tests are executed after installation and currently fail + ;; when not installing into standard locations; the author is working + ;; on a fix. + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-before + 'build 'configure + (assoc-ref gnu:%standard-phases 'configure))))) + (home-page + "https://github.com/sagemath/cysignals") + (synopsis + "Handling of interrupts and signals for Cython") + (description + "The cysignals package provides mechanisms to handle interrupts (and +other signals and errors) in Cython code, using two related approaches, +for mixed Cython/Python code or external C libraries and pure Cython code, +respectively.") + (license license:lgpl3+))) + +(define-public python2-cysignals + (package-with-python2 python-cysignals)) + +(define-public python2-shedskin + (package + (name "python2-shedskin") + (version "0.9.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/shedskin/shedskin/" + "releases/download/v" version + "/shedskin-" version ".tgz")) + (sha256 + (base32 + "0nzwrzgw1ga8rw6f0ryq7zr9kkiavd1cqz5hzxkcbicl1dk7kz41")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-resulting-include-libs + (lambda* (#:key inputs #:allow-other-keys) + (let ((libgc (assoc-ref inputs "libgc")) + (pcre (assoc-ref inputs "pcre"))) + (substitute* "shedskin/makefile.py" + (("variable == 'CCFLAGS':[ ]*") + (string-append "variable == 'CCFLAGS':\n" + " line += ' -I " pcre "/include" + " -I " libgc "/include'")) + (("variable == 'LFLAGS':[ ]*") + (string-append "variable == 'LFLAGS':\n" + " line += ' -L" pcre "/lib" + " -L " libgc "/lib'"))) + #t)))))) + (inputs `(("pcre" ,pcre) + ("libgc" ,libgc))) + (home-page "https://shedskin.github.io/") + (synopsis "Experimental Python-2 to C++ Compiler") + (description (string-append "This is an experimental compiler for a subset of +Python. It generates C++ code and a Makefile.")) + (license (list license:gpl3 license:bsd-3 license:expat)))) + +(define-public python2-rope + (package + (name "python2-rope") + (version "0.10.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rope" version)) + (sha256 + (base32 + "18k5znhpwvrfck3yp0jmhd5j8r0f0s8bk1zh5yhs2cfgmfhbwigb")))) + (arguments + ;; Rope is currently python-2 only. + ;; https://github.com/python-rope/rope/issues/57 + `(#:python ,python-2)) + (build-system python-build-system) + (native-inputs + `(("python2-unittest2" ,python2-unittest2))) + (home-page "https://github.com/python-rope/rope") + (synopsis "Refactoring library for Python") + (description "Rope is a refactoring library for Python. It facilitates +the renaming, moving and extracting of attributes, functions, modules, fields +and parameters in Python 2 source code. These refactorings can also be applied +to occurrences in strings and comments.") + (license license:gpl2))) + +(define-public python-py3status + (package + (name "python-py3status") + (version "3.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "py3status" version)) + (sha256 + (base32 + "0shxcfz4wcczj0mhwp4w0dvwd2fdd9bgprq8slim1519iiqzgwhq")))) + (build-system python-build-system) + (inputs + `(("file" ,file))) + (arguments + '(#:phases + (modify-phases %standard-phases + ;; 'file' is used for detection of configuration file encoding + ;; let's make link the dependency to particular input + (add-before 'build 'patch-file-path + (lambda* (#:key inputs #:allow-other-keys) + (let ((file-path (assoc-ref inputs "file"))) + (substitute* "py3status/parse_config.py" + (("\\['file', '-b'") + (string-append "['" file-path "/bin/file', '-b'"))) + #t)))) + #:tests? #f)) ; TODO: Requires many libraries not in Guix. + (home-page "https://github.com/ultrabug/py3status") + (synopsis "Extensible i3status wrapper written in Python") + (description "py3status is an i3status wrapper which extends i3status +functionality in a modular way, allowing you to extend your panel with your +own code, responding to click events and updating clock every second.") + (license license:bsd-3))) + +(define-public python-tblib + (package + (name "python-tblib") + (version "1.3.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "tblib" version)) + (sha256 (base32 + "1rsg8h069kqgncyv8fgzyj6qflk6j10cb78pa5jk34ixwq044vj3")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'adjust-tests + (lambda _ + (when (which "python3") + ;; Adjust the example output to match that of Python 3.7: + ;; <https://github.com/ionelmc/python-tblib/issues/36>. + (substitute* "README.rst" + (("Exception\\('fail',") "Exception('fail'")) + #t))) + (replace 'check + (lambda _ + ;; Upstream runs tests after installation and the package itself + ;; resides in a subdirectory. Extend PYTHONPATH so it will be + ;; found. + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + (invoke "py.test" "-vv" "tests" "README.rst")))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-six" ,python-six))) + (home-page "https://github.com/ionelmc/python-tblib") + (synopsis "Traceback serialization library") + (description + "Traceback serialization allows you to: + +@enumerate +@item Pickle tracebacks and raise exceptions with pickled tracebacks in +different processes. This allows better error handling when running code over +multiple processes (imagine multiprocessing, billiard, futures, celery etc). + +@item Parse traceback strings and raise with the parsed tracebacks. +@end enumerate\n") + (license license:bsd-3))) + +(define-public python2-tblib + (package-with-python2 python-tblib)) + +(define-public python-greenlet + (package + (name "python-greenlet") + (version "0.4.15") + (source (origin + (method url-fetch) + (uri (pypi-uri "greenlet" version)) + (sha256 + (base32 + "1g4g1wwc472ds89zmqlpyan3fbnzpa8qm48z3z1y6mlk44z485ll")))) + (build-system python-build-system) + (home-page "https://greenlet.readthedocs.io/") + (synopsis "Lightweight in-process concurrent programming") + (description + "Greenlet package is a spin-off of Stackless, a version of CPython +that supports micro-threads called \"tasklets\". Tasklets run +pseudo-concurrently (typically in a single or a few OS-level threads) and +are synchronized with data exchanges on \"channels\".") + (license (list license:psfl license:expat)))) + +(define-public python2-greenlet + (package-with-python2 python-greenlet)) + +(define-public python-objgraph + (package + (name "python-objgraph") + (version "3.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "objgraph" version)) + (sha256 + (base32 + "184m09am5gpbqfaiy7l0hwh476mczbrly1dffs0rw2p1d1i2q32a")))) + (build-system python-build-system) + (propagated-inputs + `(("python-graphviz" ,python-graphviz))) + (native-inputs + `(("python-mock" ,python-mock) + ("graphviz" ,graphviz))) + (home-page "https://mg.pov.lt/objgraph/") + (synopsis "Draw Python object reference graphs with graphviz") + (description + "This package provides tools to draw Python object reference graphs with +graphviz.") + (license license:expat))) + +(define-public python-gevent + (package + (name "python-gevent") + (version "1.3.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "gevent" version)) + (sha256 + (base32 + "0b0fr04qdk1p4sniv87fh8z5psac60x01pv054kpgi94520g81iz")) + (modules '((guix build utils))) + (snippet + '(begin + ;; unbunding libev and c-ares + (delete-file-recursively "deps") + #t)))) + (build-system python-build-system) + (arguments + `(#:modules ((ice-9 ftw) + (ice-9 match) + (srfi srfi-26) + (guix build utils) + (guix build python-build-system)) + #:phases (modify-phases %standard-phases + (add-after 'unpack 'unpack-libev + (lambda* (#:key inputs #:allow-other-keys) + (mkdir-p "deps/libev") + ;; FIXME: gevent requires building libev, even though + ;; it only links against the proper one. + (invoke "tar" "-xf" (assoc-ref inputs "libev-source") + "--strip-components=1" "-C" "deps/libev"))) + (add-before 'patch-source-shebangs 'patch-hard-coded-paths + (lambda _ + (substitute* "src/gevent/subprocess.py" + (("/bin/sh") (which "sh"))) + (for-each (lambda (file) + (substitute* file + (("/bin/sh") (which "sh")) + (("/bin/true") (which "true")))) + (find-files "src/greentest" "\\.py$")) + #t)) + (add-before 'build 'do-not-use-bundled-sources + (lambda* (#:key inputs #:allow-other-keys) + (setenv "CONFIG_SHELL" (which "bash")) + (setenv "LIBEV_EMBED" "false") + (setenv "CARES_EMBED" "false") + (setenv "EMBED" "false") + + (let ((greenlet (string-append + (assoc-ref inputs "python-greenlet") + "/include"))) + (match (scandir greenlet + (lambda (item) + (string-prefix? "python" item))) + ((python) + (setenv "CPATH" + (string-append greenlet "/" python))))) + #t)) + (add-before 'check 'skip-timer-test + (lambda _ + ;; XXX: Skip 'TestTimerResolution', which appears to be + ;; unreliable. + (substitute* "src/greentest/test__core_timer.py" + (("not greentest.RUNNING_ON_CI") "False")) + #t)) + (replace 'check + (lambda _ + ;; Make sure the build directory is on PYTHONPATH. + (setenv "PYTHONPATH" + (string-append + (getenv "PYTHONPATH") ":" + (getcwd) "/build/" + (car (scandir "build" (cut string-prefix? "lib." <>))))) + (with-directory-excursion "src/greentest" + ;; XXX: Many tests require network access. Instead we only + ;; run known-good tests. Unfortunately we cannot use + ;; recursion here since this directory also contains + ;; Python-version-specific subfolders. + (apply invoke "python" "testrunner.py" "--config" + "known_failures.py" + (scandir "." (cut regexp-exec + (make-regexp "test_+(subprocess|core)") + <>))))))))) + (propagated-inputs + `(("python-greenlet" ,python-greenlet) + ("python-objgraph" ,python-objgraph))) + (native-inputs + `(("libev-source" ,(package-source libev)) + ("python-six" ,python-six))) + (inputs + `(("c-ares" ,c-ares) + ("libev" ,libev))) + (home-page "http://www.gevent.org/") + (synopsis "Coroutine-based network library") + (description + "gevent is a coroutine-based Python networking library that uses greenlet +to provide a high-level synchronous API on top of the libev event loop.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-gevent)))))) + +(define-public python2-gevent + (let ((base (package-with-python2 + (strip-python2-variant python-gevent)))) + (package + (inherit base) + (native-inputs `(,@(package-native-inputs python-gevent) + ("python-mock" ,python2-mock)))))) + +(define-public python-fastimport + (package + (name "python-fastimport") + (version "0.9.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fastimport" version)) + (sha256 + (base32 "1aqjsin4rmqm7ln4j0p73fzxifws6c6ikgyhav7r137m2ixsxl43")))) + (build-system python-build-system) + (home-page "https://github.com/jelmer/python-fastimport") + (synopsis "VCS fastimport parser and generator in Python") + (description "This package provides a parser for and generator of the Git +@url{https://www.kernel.org/pub/software/scm/git/docs/git-fast-import.html,fastimport} +format.") + (license license:gpl2+))) + +(define-public python2-fastimport + (package-with-python2 python-fastimport)) + +(define-public python-twisted + (package + (name "python-twisted") + (version "17.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "Twisted" version ".tar.bz2")) + (sha256 + (base32 + "1p245mg15hkxp7hy5cyq2fgvlgjkb4cg0gwkwd148nzy1bbi3wnv")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; FIXME: Some tests are failing. + ;; #:phases + ;; (modify-phases %standard-phases + ;; (replace 'check + ;; (lambda _ + ;; (zero? (system* "./bin/trial" "twisted"))))) + (propagated-inputs + `(("python-zope-interface" ,python-zope-interface) + ("python-incremental" ,python-incremental) + ("python-constantly" ,python-constantly) + ("python-automat" ,python-automat))) + (home-page "https://twistedmatrix.com/") + (synopsis "Asynchronous networking framework written in Python") + (description + "Twisted is an extensible framework for Python programming, with special +focus on event-based network programming and multiprotocol integration.") + (license license:expat))) + +(define-public python2-twisted + (package-with-python2 python-twisted)) + +(define-public python-pika + (package + (name "python-pika") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pika" version)) + (sha256 + (base32 + "0ld7akgm93s8pfa4dsx9qlzlhj76zspbr5m9ms0ns09yd2w4aq9h")))) + (build-system python-build-system) + (native-inputs + `(("python-pyev" ,python-pyev) + ("python-tornado" ,python-tornado) + ("python-twisted" ,python-twisted))) + (home-page "https://pika.readthedocs.org") + (synopsis "Pure Python AMQP Client Library") + (description + "Pika is a pure-Python implementation of the AMQP (Advanced Message Queuing +Protocol) 0-9-1 protocol that tries to stay fairly independent of the underlying +network support library.") + (license license:bsd-3))) + +(define-public python2-pika + (package-with-python2 python-pika)) + +(define-public python-ply + (package + (name "python-ply") + (version "3.10") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ply" version)) + (sha256 + (base32 + "1jxsr1d2f732r6ljhvm827113dckwl6qwakfvpbdhcbhvpvlmscn")))) + (build-system python-build-system) + (home-page "http://www.dabeaz.com/ply/") + (synopsis "Python Lex & Yacc") + (description "PLY is a @code{lex}/@code{yacc} implemented purely in Python. +It uses LR parsing and does extensive error checking.") + (license license:bsd-3))) + +(define-public python2-ply + (package-with-python2 python-ply)) + +(define-public python-tabulate + (package + (name "python-tabulate") + (version "0.7.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "tabulate" version)) + (sha256 + (base32 + "1inqhspd4frxnp08c32yndr0lc4px1xfkqah184i5w09gkhvi843")))) + (build-system python-build-system) + (arguments + ;; FIXME: The pypi release tarball is missing a 'test/common.py' + ;; and the latest release is not tagged in the upstream repository. + '(#:tests? #f)) + (home-page "https://bitbucket.org/astanin/python-tabulate") + (synopsis "Pretty-print tabular data") + (description + "Tabulate is a library and command-line utility to pretty-print tabular +data in Python.") + (license license:expat))) + +(define-public python2-tabulate + (package-with-python2 python-tabulate)) + +(define-public python-kazoo + (package + (name "python-kazoo") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "kazoo" version)) + (sha256 + (base32 + "16y213k7r8shyn2zw1k6lkzjgcrvm441pqv8scvcjixhvpbx3hm7")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; XXX: needs zookeeper + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://kazoo.readthedocs.org") + (synopsis "High-level Zookeeper client library") + (description + "Kazoo is a Python client library for the Apache Zookeeper distributed +application service. It is designed to be easy to use and to avoid common +programming errors.") + (license license:asl2.0))) + +(define-public python2-kazoo + (package-with-python2 python-kazoo)) + +(define-public python-pykafka + (package + (name "python-pykafka") + (version "2.4.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/8b/3e/" + "384eeff406b06315738b62483fd2126c6e4f544167116b17cc04ea7d2a59/" + "pykafka-" version ".tar.gz")) + (sha256 + (base32 + "1id6sr159p6aa13bxcqyr9gln8sqg1l0ddzns5iws8kk5q1p5cfv")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; XXX: needs zookeeper, kafka, etc. + (propagated-inputs + `(("python-gevent" ,python-gevent) + ("python-kazoo" ,python-kazoo) + ("python-tabulate" ,python-tabulate))) + (inputs + `(("librdkafka" ,librdkafka))) + (home-page "https://pykafka.readthedocs.io/") + (synopsis "Apache Kafka client for Python") + (description + "PyKafka is a client for the Apache Kafka distributed messaging system. +It includes Python implementations of Kafka producers and consumers, which +are optionally backed by a C extension built on librdkafka.") + (license license:asl2.0))) + +(define-public python2-pykafka + (package-with-python2 python-pykafka)) + +(define-public python-wcwidth + (package + (name "python-wcwidth") + (version "0.1.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "wcwidth" version)) + (sha256 + (base32 + "0pn6dflzm609m4r3i8ik5ni9ijjbb5fa3vg1n7hn6vkd49r77wrx")))) + (build-system python-build-system) + (home-page "https://github.com/jquast/wcwidth") + (synopsis "Measure number of terminal column cells of wide-character codes") + (description "Wcwidth measures the number of terminal column cells of +wide-character codes. It is useful for those implementing a terminal emulator, +or programs that carefully produce output to be interpreted by one. It is a +Python implementation of the @code{wcwidth} and @code{wcswidth} C functions +specified in POSIX.1-2001 and POSIX.1-2008.") + (license license:expat))) + +(define-public python2-wcwidth + (package-with-python2 python-wcwidth)) + +(define-public python2-jsonrpclib + (package + (name "python2-jsonrpclib") + (version "0.1.7") + (source (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/j/jsonrpclib/" + "jsonrpclib-" version ".tar.gz")) + (sha256 + (base32 + "02vgirw2bcgvpcxhv5hf3yvvb4h5wzd1lpjx8na5psdmaffj6l3z")))) + (build-system python-build-system) + (arguments + `(#:tests? #f + #:python ,python-2)) + (home-page "https://github.com/joshmarshall/jsonrpclib/") + (synopsis "Implementation of JSON-RPC specification for Python") + (description + "This library is an implementation of the JSON-RPC specification. +It supports both the original 1.0 specification, as well as the +new (proposed) 2.0 spec, which includes batch submission, keyword arguments, +etc.") + (license license:asl2.0))) + +(define-public python-chai + (package + (name "python-chai") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "chai" version)) + (sha256 + (base32 + "1k6n6zbgrrs83crp6mr3yqj9zlv40b8rpisyrliwsq7naml2p3gz")))) + (build-system python-build-system) + (home-page "https://github.com/agoragames/chai") + (synopsis "Mocking framework for Python") + (description + "Chai provides an api for mocking, stubbing and spying your python +objects, patterned after the Mocha library for Ruby.") + (license license:bsd-3))) + +(define-public python2-chai + (package-with-python2 python-chai)) + +(define-public python-inflection + (package + (name "python-inflection") + (version "0.3.1") + (source + (origin (method url-fetch) + (uri (pypi-uri "inflection" version)) + (sha256 + (base32 + "1jhnxgnw8y3mbzjssixh6qkc7a3afc4fygajhqrqalnilyvpzshq")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/jpvanhal/inflection") + (synopsis "Python string transformation library") + (description + "Inflection is a string transformation library. It singularizes +and pluralizes English words, and transforms strings from CamelCase to +underscored string.") + (license license:expat))) + +(define-public python2-inflection + (package-with-python2 python-inflection)) + +(define-public python-pylev + (package + (name "python-pylev") + (version "1.3.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pylev" version)) + (sha256 + (base32 + "1hz1x9blsbxya1y9nnhnwwdnqmakxi9mc0jkwj0rn6b1h44i0f86")))) + (build-system python-build-system) + (home-page "https://github.com/toastdriven/pylev") + (synopsis "Levenshtein distance implementation in Python") + (description "Pure Python Levenshtein implementation, based off the +Wikipedia code samples at +@url{http://en.wikipedia.org/wiki/Levenshtein_distance}.") + (license license:bsd-3))) + +(define-public python2-pylev + (package-with-python2 python-pylev)) + +(define-public python-cleo + (package + (name "python-cleo") + (version "0.6.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "cleo" version)) + (sha256 + (base32 + "0q1cf0szr0d54am4pypzwdnm74zpladdsinad94c2fz5i06fdpf7")))) + (build-system python-build-system) + (native-inputs + `(;; For testing + ("python-mock" ,python-mock) + ("python-pytest-mock" ,python-pytest-mock) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-backpack" ,python-backpack) + ("python-pastel" ,python-pastel) + ("python-pylev" ,python-pylev))) + (home-page "https://github.com/sdispater/cleo") + (synopsis "Command-line arguments library for Python") + (description + "Cleo allows you to create command-line commands with signature in +docstring and colored output.") + (license license:expat))) + +(define-public python2-cleo + (package-with-python2 python-cleo)) + +(define-public python-lazy-object-proxy + (package + (name "python-lazy-object-proxy") + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "lazy-object-proxy" version)) + (sha256 + (base32 + "0yha7q9bhw857fwaby785d63mffhngl9npwzlk9i0pwlkwvbx4gb")))) + (build-system python-build-system) + (home-page "https://github.com/ionelmc/python-lazy-object-proxy") + (synopsis "Lazy object proxy for python") + (description + "Lazy object proxy is an object that wraps a callable but defers the call +until the object is actually required, and caches the result of said call.") + (license license:bsd-2))) + +(define-public python2-lazy-object-proxy + (package-with-python2 python-lazy-object-proxy)) + +(define-public python-dnspython + (package + (name "python-dnspython") + (version "1.15.0") + (source (origin + (method url-fetch) + (uri (string-append "http://www.dnspython.org/kits/" + version "/dnspython-" version ".tar.gz")) + (sha256 + (base32 + "0jr4v2pd90i6l1xxbss2m05psbjaxvyvvvpq44wycijpfgjqln8i")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; XXX: requires internet access + (home-page "http://www.dnspython.org") + (synopsis "DNS toolkit for Python") + (description + "dnspython is a DNS toolkit for Python. It supports almost all record +types. It can be used for queries, zone transfers, and dynamic updates. +It supports TSIG authenticated messages and EDNS0.") + (license license:expat))) + +(define-public python2-dnspython + (package-with-python2 python-dnspython)) + +(define-public python-email-validator + (package + (name "python-email-validator") + (version "1.0.2") + (source + (origin (method url-fetch) + (uri (pypi-uri "email_validator" version)) + (sha256 + (base32 + "1ja9149l9ck5n45a72h3is7v476hjny5ybxbcamx1nw6iplsm7k6")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'build 'use-dnspython + (lambda _ + (substitute* "setup.py" + (("dnspython3") "dnspython")) + #t))))) + (propagated-inputs + `(("python-dnspython" ,python-dnspython) + ("python-idna" ,python-idna))) + (home-page "https://github.com/JoshData/python-email-validator") + (synopsis "Email address validation library for Python") + (description + "This library validates email address syntax and deliverability.") + (license license:cc0))) + +(define-public python2-email-validator + (package-with-python2 python-email-validator)) + +(define-public python-ukpostcodeparser + (package + (name "python-ukpostcodeparser") + (version "1.0.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "UkPostcodeParser" version)) + (sha256 + (base32 + "1jwg9z4rz51mcka1821rwgycsd0mcicyp1kiwjfa2kvg8bm9p2qd")))) + (build-system python-build-system) + (home-page "https://github.com/hamstah/ukpostcodeparser") + (synopsis "UK Postcode parser for Python") + (description + "This library provides the @code{parse_uk_postcode} function for +parsing UK postcodes.") + (license license:expat))) + +(define-public python2-ukpostcodeparser + (package-with-python2 python-ukpostcodeparser)) + +(define-public python-faker + (package + (name "python-faker") + (version "0.7.9") + (source (origin + (method url-fetch) + (uri (pypi-uri "Faker" version)) + (sha256 + (base32 + "1fh2p2yz0fsdr4fqwxgddwbvfb6qn6vp8yx0qwqzra27yq5d1wsm")) + (patches + (search-patches "python-faker-fix-build-32bit.patch")) + (modules '((guix build utils))) + (snippet + '(begin + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "python" "-m" "unittest" "-v" "tests"))))))) + (native-inputs + `(;; For testing + ("python-email-validator" ,python-email-validator) + ("python-mock" ,python-mock) + ("python-ukpostcodeparser" ,python-ukpostcodeparser))) + (propagated-inputs + `(("python-dateutil" ,python-dateutil) + ("python-six" ,python-six))) + (home-page "https://github.com/joke2k/faker") + (synopsis "Python package that generates fake data") + (description + "Faker is a Python package that generates fake data such as names, +addresses, and phone numbers.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-faker)))))) + +(define-public python2-faker + (let ((base (package-with-python2 (strip-python2-variant + python-faker)))) + (package + (inherit base) + (propagated-inputs + `(("python2-ipaddress" ,python2-ipaddress) + ,@(package-propagated-inputs base)))))) + +(define-public python-pyaml + (package + (name "python-pyaml") + (version "18.11.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyaml" version)) + (sha256 + (base32 + "0fi604ix8lbpj1266q7js6szm771saprdzzcdwmj43wy83694qmr")))) + (build-system python-build-system) + (native-inputs + `(("python-unidecode" ,python-unidecode))) + (propagated-inputs + `(("python-pyyaml" ,python-pyyaml))) + (home-page "https://github.com/mk-fg/pretty-yaml") + (synopsis "YAML pretty-print library for Python") + (description + "pyaml is a PyYAML based python module to produce pretty and readable +YAML-serialized data.") + (license (license:non-copyleft "http://www.wtfpl.net/txt/copying/")))) + +(define-public python2-pyaml + (package-with-python2 python-pyaml)) + +(define-public python-backpack + (package + (name "python-backpack") + (version "0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "backpack" version)) + (sha256 + (base32 + "14rq1mvm0jda90lcx9gyyby9dvq4x3js2cmxvd6vl4686ixwyqh1")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-nose" ,python-nose))) + (propagated-inputs + `(("python-simplejson" ,python-simplejson))) + (home-page "https://github.com/sdispater/backpack") + (synopsis "Utilities for working with Python collections") + (description "Backpack provides some useful utilities for working with +collections of data.") + (license license:expat))) + +(define-public python2-backpack + (package-with-python2 python-backpack)) + +(define-public python-prompt-toolkit + (package + (name "python-prompt-toolkit") + (version "2.0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "prompt_toolkit" version ".tar.gz")) + (sha256 + (base32 + "0fgacqk73w7s932vy46pan2yp8rvjmlkag20xvaydh9mhf6h85zx")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'check) + (add-after 'install 'post-install-check + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; HOME is needed for the test + ;; "test_pathcompleter_can_expanduser". + (setenv "HOME" "/tmp") + (add-installed-pythonpath inputs outputs) + (invoke "py.test")))))) + (propagated-inputs + `(("python-wcwidth" ,python-wcwidth) + ("python-six" ,python-six) + ("python-pygments" ,python-pygments))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/jonathanslenders/python-prompt-toolkit") + (synopsis "Library for building command line interfaces in Python") + (description + "Prompt-Toolkit is a library for building interactive command line +interfaces in Python. It's like GNU Readline but it also features syntax +highlighting while typing, out-of-the-box multi-line input editing, advanced +code completion, incremental search, support for Chinese double-width +characters, mouse support, and auto suggestions.") + (license license:bsd-3))) + +(define-public python2-prompt-toolkit + (package-with-python2 python-prompt-toolkit)) + +(define-public python-prompt-toolkit-1 + (package (inherit python-prompt-toolkit) + (version "1.0.15") + (source + (origin + (method url-fetch) + (uri (pypi-uri "prompt_toolkit" version ".tar.gz")) + (sha256 + (base32 + "05v9h5nydljwpj5nm8n804ms0glajwfy1zagrzqrg91wk3qqi1c5")))))) + +(define-public python2-prompt-toolkit-1 + (package-with-python2 python-prompt-toolkit-1)) + +(define-public python-jedi + (package + (name "python-jedi") + (version "0.13.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jedi" version)) + (sha256 + (base32 + "0j11q42g5vjkyhhjpyy8nb0gdxs78m3rpjai7p1hvgpyl9rkyjdp")))) + (build-system python-build-system) + (arguments + `( ;; Many tests are failing with Python 3.7.x as of version 0.13.1 (see: + ;; https://github.com/davidhalter/jedi/issues/1263) + #:tests? #f + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "py.test" "-vv"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-docopt" ,python-docopt))) + (propagated-inputs + `(("python-parso" ,python-parso))) + (home-page "https://github.com/davidhalter/jedi") + (synopsis "Autocompletion and static analysis library for Python") + (description + "Jedi is a static analysis tool for Python that can be used in Integrated +Development Environments (@dfn{IDE}s) and text editors. It understands Python +on a deeper level than many other static analysis frameworks for Python. + +Jedi understands docstrings and you can use Jedi autocompletion in your REPL as +well.") + (license license:expat))) + +(define-public python2-jedi + (package-with-python2 python-jedi)) + +(define-public ptpython + (package + (name "ptpython") + (version "0.34") + (source (origin + (method url-fetch) + (uri (pypi-uri "ptpython" version)) + (sha256 + (base32 + "1mmbiyzf0n8hm7z2a562x7w5cbl6jc0zsk6vp40q1z4cyblv1k13")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; FIXME: No tests in pypi tarball. + (propagated-inputs + `(("python-docopt" ,python-docopt) + ("python-jedi" ,python-jedi) + ("python-prompt-toolkit" ,python-prompt-toolkit) + ("python-pygments" ,python-pygments))) + (home-page "https://github.com/jonathanslenders/ptpython") + (synopsis "Python Read-Eval-Print-Loop with nice IDE-like features") + (description + "ptpython is a Python read-eval-print loop with IDE-like features. +It supports syntax highlighting, multiline editing, autocompletion, mouse, +color schemes, bracketed paste, Vi and Emacs keybindings, Chinese characters +etc.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay ptpython-2)))))) + +(define-public ptpython-2 + (let ((base (package-with-python2 (strip-python2-variant ptpython)))) + (package + (inherit base) + (name "ptpython2")))) + +(define-public python-stem + (package + (name "python-stem") + (version "1.7.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "stem" version)) + (sha256 + (base32 + "1awiglfiajnx2hva9aqpj3fmdvdb4qg7cwnlfyih827m68y3cq8v")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "./run_tests.py" "--unit") + #t))))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pycodestyle" ,python-pycodestyle) + ("python-pyflakes" ,python-pyflakes))) + (home-page "https://stem.torproject.org/") + (synopsis + "Python controller library that allows applications to interact with Tor") + (description + "Stem is a Python controller library for Tor. With it you can use Tor's +control protocol to script against the Tor process and read descriptor data +relays publish about themselves.") + (license license:lgpl3))) + +(define-public python2-stem + (package-with-python2 python-stem)) + +(define-public python-pyserial + (package + (name "python-pyserial") + (version "3.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyserial" version)) + (sha256 + (base32 + "0k1nfdrxxkdlv4zgaqsdv8li0pj3gbh2pyxw8q2bsg6f9490amyn")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; FIXME: 3/49 tests are failing. + ;; #:phases + ;; (modify-phases %standard-phases + ;; (replace 'check + ;; (lambda _ + ;; (zero? (system* "python" "test/run_all_tests.py" "loop://"))))))) + (home-page + "https://github.com/pyserial/pyserial") + (synopsis "Python Serial Port Bindings") + (description "@code{pyserial} provide serial port bindings for Python. It +supports different byte sizes, stop bits, parity and flow control with RTS/CTS +and/or Xon/Xoff. The port is accessed in RAW mode.") + (license license:bsd-3))) + +(define-public python2-pyserial + (package-with-python2 python-pyserial)) + +(define-public python-kivy + (package + (name "python-kivy") + (version "1.10.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Kivy" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1zzxjdp78hfjjiklzr82l4zwibwcq4j6kgicspqs6iyyfn5yisbw")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Tests require many optional packages + #:phases + (modify-phases %standard-phases + (add-after 'patch-generated-file-shebangs 'set-sdl-paths + (lambda* (#:key inputs #:allow-other-keys) + (setenv "KIVY_SDL2_PATH" + (string-append (assoc-ref inputs "sdl-union") + "/include/SDL2")) + #t))))) + (native-inputs + `(("git" ,git) + ("pkg-config" ,pkg-config) + ("python-cython" ,python-cython))) + (inputs + `(("gstreamer" ,gstreamer) + ("mesa" ,mesa) + ("sdl-union" + ,(sdl-union (list sdl2 sdl2-image sdl2-mixer sdl2-ttf))))) + (home-page "http://kivy.org") + (synopsis + "Multitouch application framework") + (description + "A software library for rapid development of +hardware-accelerated multitouch applications.") + (license license:expat))) + +(define-public python2-kivy + (package-with-python2 python-kivy)) + +(define-public python-kivy-next + (deprecated-package "python-kivy-next" python-kivy)) + +(define-public python2-kivy-next + (deprecated-package "python2-kivy-next" python2-kivy)) + +(define-public python-binaryornot + (package + (name "python-binaryornot") + (version "0.4.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "binaryornot" version)) + (sha256 + (base32 + "0qc006986rb6bcbmiymwgcl1mns2jphr1j7sr7nk41nlr7gh359m")))) + (build-system python-build-system) + (propagated-inputs + `(("python-chardet" ,python-chardet) + ("python-hypothesis" ,python-hypothesis))) + (home-page "https://github.com/audreyr/binaryornot") + (synopsis "Package to check if a file is binary or text") + (description "Ultra-lightweight pure Python package to check if a file is +binary or text.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-binaryornot)))))) + +(define-public python2-binaryornot + (let ((base (package-with-python2 (strip-python2-variant python-binaryornot)))) + (package (inherit base) + (propagated-inputs + `(("python2-enum34" ,python2-enum34) + ,@(package-propagated-inputs base)))))) + +(define-public python-nltk + (package + (name "python-nltk") + (version "3.2.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "nltk" version)) + (sha256 + (base32 + "0skxbhnymwlspjkzga0f7x1hg3y50fwpfghs8g8k7fh6f4nknlym")))) + (build-system python-build-system) + (arguments + '(;; The tests require some extra resources to be downloaded. + ;; TODO Try packaging these resources. + #:tests? #f)) + (home-page "http://nltk.org/") + (synopsis "Natural Language Toolkit") + (description "It provides interfaces to over 50 corpora and lexical +resources such as WordNet, along with a suite of text processing libraries +for classification, tokenization, stemming, tagging, parsing, and semantic +reasoning, wrappers for natural language processing libraries.") + (license license:asl2.0))) + +(define-public python2-nltk + (package-with-python2 python-nltk)) + +(define-public python-pymongo + (package + (name "python-pymongo") + (version "3.7.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "pymongo" version)) + (sha256 + (base32 + "0zis4707r9hdg5qgkhp3wss9camr9h56ixyfc8n9dxwlnnly4x4c")))) + (build-system python-build-system) + (propagated-inputs + `(("python-certifi" ,python-certifi))) + (home-page "https://github.com/mongodb/mongo-python-driver") + (synopsis "Python driver for MongoDB") + (description "Python driver for MongoDB.") + (license license:asl2.0))) + +(define-public python2-pymongo + (package-with-python2 python-pymongo)) + +(define-public python-sh + (package + (name "python-sh") + (version "1.11") + (source (origin + (method url-fetch) + (uri (pypi-uri "sh" version)) + (sha256 + (base32 + "192r0mpv6dmkysjzhc43ddffiwb5g7c76bgr1mb1z2xz9awbj3sr")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; no tests + (home-page "https://github.com/amoffat/sh") + (synopsis "Python subprocess interface") + (description "Abstracts process invocation by providing a function +interface for programs.") + (license license:expat))) + +(define-public python2-sh + (package-with-python2 python-sh)) + +(define-public python-consul + (package + (name "python-consul") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-consul" version)) + (sha256 + (base32 + "0rfyxcy4cr3x848vhx876ifalxd5ghq6l5x813m49h4vq2d4jiq8")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; The tests are not distributed + (propagated-inputs + `(("python-requests" ,python-requests) + ("python-six" ,python-six))) + (home-page "https://github.com/cablehead/python-consul") + (synopsis "Python client for Consul") + (description + "Python client for @url{http://www.consul.io/,Consul}, a tool for service +discovery, monitoring and configuration.") + (license license:expat))) + +(define-public python2-consul + (package-with-python2 python-consul)) + +(define-public python-schematics + (package + (name "python-schematics") + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/schematics/schematics/archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "19v1i69bf3bzarfxmbv0v6ivpcn758x3shvbiy9l2hy0lvqwnp6l")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (arguments + `(#:tests? #f)) ; requires a bunch of not very nice packages with fixed + ; version requirements (eg python-coveralls) + (home-page "https://github.com/schematics/schematics") + (synopsis "Python Data Structures for Humans") + (description "Python Data Structures for Humans.") + (license license:bsd-3))) + +(define-public python2-schematics + (package-with-python2 python-schematics)) + +(define-public python-odfpy + (package + (name "python-odfpy") + (version "1.3.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "odfpy" version)) + (sha256 + (base32 + "1a6ms0w9zfhhkqhvrnynwwbxrivw6hgjc0s5k7j06npc7rq0blxw")))) + (arguments + `(#:modules ((srfi srfi-1) + (guix build python-build-system) + (guix build utils)) + #:phases + (modify-phases %standard-phases + (replace 'check + ;; The test runner invokes python2 and python3 for test*.py. + ;; To avoid having both in inputs, we replicate it here. + (lambda _ + (every (lambda (test-file) + (zero? (system* "python" test-file))) + (find-files "tests" "^test.*\\.py$"))))))) + (build-system python-build-system) + (home-page "https://github.com/eea/odfpy") + (synopsis "Python API and tools to manipulate OpenDocument files") + (description "Collection of libraries and utility programs written in +Python to manipulate OpenDocument 1.2 files.") + (license + ;; The software is mainly dual GPL2+ and ASL2.0, but includes a + ;; number of files with other licenses. + (list license:gpl2+ license:asl2.0 license:lgpl2.1+ license:cc-by-sa3.0)))) + +(define-public python2-odfpy + (package-with-python2 python-odfpy)) + +(define-public python-natsort + (package + (name "python-natsort") + (version "5.4.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "natsort" version)) + (sha256 + (base32 + "0i732amg6yzkx4g4c9j09jmqq39q377x9cl2nbkm5hax2c2v0wxf")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (srfi srfi-1) + (srfi srfi-26) + (ice-9 ftw)) + #:phases + (modify-phases %standard-phases + (add-before 'check 'set-cachedir + ;; Tests require write access to $HOME by default + (lambda _ (setenv "PYTHON_EGG_CACHE" "/tmp") #t)) + (replace 'check + (lambda _ + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append + cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH"))) + (invoke "pytest" "-v"))))))) + (native-inputs + `(("python-hypothesis" ,python-hypothesis) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock) + ("python-pytest" ,python-pytest))) + (propagated-inputs ; TODO: Add python-fastnumbers. + `(("python-pyicu" ,python-pyicu))) + (home-page "https://github.com/SethMMorton/natsort") + (synopsis "Natural sorting for python and shell") + (description + "Natsort lets you apply natural sorting on lists instead of +lexicographical. If you use the built-in @code{sorted} method in python +on a list such as @code{['a20', 'a9', 'a1', 'a4', 'a10']}, it would be +returned as @code{['a1', 'a10', 'a20', 'a4', 'a9']}. Natsort provides a +function @code{natsorted} that identifies numbers and sorts them separately +from strings. It can also sort version numbers, real numbers, mixed types +and more, and comes with a shell command @command{natsort} that exposes this +functionality in the command line.") + (license license:expat) + (properties `((python2-variant . ,(delay python2-natsort)))))) + +(define-public python2-natsort + (let ((base (package-with-python2 (strip-python2-variant python-natsort)))) + (package (inherit base) + (native-inputs + `(("python2-pathlib" ,python2-pathlib) + ,@(package-native-inputs base)))))) + +(define-public python-glances + (package + (name "python-glances") + (version "3.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Glances" version)) + (sha256 + (base32 + "09fxysfp1n16csqvzvawy74qm6a94nvwjf3vcf5gkqp4i6k4vjjy")))) + (build-system python-build-system) + (propagated-inputs + `(("python-psutil" ,python-psutil))) + (home-page + "https://github.com/nicolargo/glances") + (synopsis + "A cross-platform curses-based monitoring tool") + (description + "Glances is a curses-based monitoring tool for a wide variety of platforms. +Glances uses the PsUtil library to get information from your system. It monitors +CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") + (license license:lgpl3+))) + +(define-public python2-glances + (package-with-python2 python-glances)) + +(define-public python-graphql-core + (package + (name "python-graphql-core") + (version "0.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "graphql-core" version)) + (sha256 + (base32 + "0rsaarx2sj4xnw9966rhh4haiqaapm4lm2mfqm48ywd51j5vh1a0")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Tests require the unpackaged pytest-benchmark. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-hardcoded-version + (lambda _ (substitute* + "setup.py" + (("'gevent==1.1rc1'") "'gevent'")) + #t))))) + (native-inputs + `(("python-gevent" ,python-gevent) + ("python-mock" ,python-mock) + ("python-pytest-mock" ,python-pytest-mock))) + (propagated-inputs + `(("python-promise" ,python-promise) + ("python-six" ,python-six))) + (home-page "https://github.com/graphql-python/graphql-core") + (synopsis "GraphQL implementation for Python") + (description + "GraphQL implementation for Python. GraphQL is a data query language and +runtime designed and used to request and deliver data to mobile and web apps. +This library is a port of @url{https://github.com/graphql/graphql-js,graphql-js} +to Python.") + (license license:expat))) + +(define-public python2-graphql-core + (package-with-python2 python-graphql-core)) + +(define-public python-graphql-relay + (package + (name "python-graphql-relay") + (version "0.4.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "graphql-relay" version)) + (sha256 + (base32 + "1nv5dxcj59zv31qvl8bd142njmxcmymny2dz3br1l2cpbljbf5i7")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; The tests are not distributed + (propagated-inputs + `(("python-graphql-core" ,python-graphql-core) + ("python-promise" ,python-promise) + ("python-six" ,python-six))) + (home-page "https://github.com/graphql-python/graphql-relay-py") + (synopsis "Relay implementation for Python") + (description + "This is a library to allow the easy creation of Relay-compliant servers +using the GraphQL Python reference implementation of a GraphQL server. It +should be noted that the code is a exact port of the original +@url{https://github.com/graphql/graphql-relay-js,graphql-relay js implementation} +from Facebook.") + (license license:expat))) + +(define-public python2-graphql-relay + (package-with-python2 python-graphql-relay)) + +(define-public python-graphene + (package + (name "python-graphene") + (version "0.10.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "graphene" version)) + (sha256 + (base32 + "09zhac7igh9ixdz0ay6csy35b40l1jwbf2wrbxmgxwfhy51iy06q")))) + (build-system python-build-system) + (propagated-inputs + `(("python-graphql-core" ,python-graphql-core) + ("python-graphql-relay" ,python-graphql-relay) + ("python-iso8601" ,python-iso8601) + ("python-promise" ,python-promise) + ("python-six" ,python-six))) + (arguments + `(#:tests? #f)) ; no tests/ in the PyPI tarball + (home-page "http://graphene-python.org/") + (synopsis "GraphQL Framework for Python") + (description + "Graphene is a Python library for building GraphQL schemas/types. +A GraphQL schema describes your data model, and provides a GraphQL server +with an associated set of resolve methods that know how to fetch data.") + (properties `((python2-variant . ,(delay python2-graphene)))) + (license license:expat))) + +(define-public python2-graphene + (let ((base (package-with-python2 + (strip-python2-variant python-graphene)))) + (package (inherit base) + (native-inputs + `(("python2-sqlalchemy" ,python2-sqlalchemy) + ,@(package-native-inputs base)))))) + +(define-public python-nautilus + (package + (name "python-nautilus") + (version "0.4.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nautilus" version)) + (sha256 + (base32 + "01hwzjc1zshk4vvxrcghm398fpy4jls66dyz06g07mrwqif8878p")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ; fails to import test modules + (propagated-inputs + `(("python-bcrypt" ,python-bcrypt) + ("python-click" ,python-click) + ("python-consul" ,python-consul) + ("python-graphene" ,python-graphene) + ("python-jinja2" ,python-jinja2) + ("python-peewee" ,python-peewee) + ("python-pika" ,python-pika) + ("python-tornado" ,python-tornado) + ("python-wtforms" ,python-wtforms))) + (native-inputs + `(("python-nose2" ,python-nose2))) + (home-page "https://github.com/AlecAivazis/nautilus") + (synopsis "Library for creating microservice applications") + (description + "Nautilus is a framework for flux based microservices that looks to +provide extendible implementations of common aspects of a cloud so that you can +focus on building massively scalable web applications.") + (license license:expat))) + +(define-public python-snowballstemmer + (package + (name "python-snowballstemmer") + (version "1.2.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "snowballstemmer" version)) + (sha256 + (base32 + "0a0idq4y5frv7qsg2x62jd7rd272749xk4x99misf5rcifk2d7wi")))) + (build-system python-build-system) + (arguments + `(;; No tests exist + #:tests? #f)) + (home-page "https://github.com/shibukawa/snowball_py") + (synopsis "Snowball stemming library collection for Python") + (description "This package provides 16 word stemmer algorithms generated +from Snowball algorithms. It includes the 15 original ones plus the Poerter +English stemmer.") + (license license:bsd-3))) + +(define-public python2-snowballstemmer + (package-with-python2 python-snowballstemmer)) + +(define-public python-sphinx-cloud-sptheme + (package + (name "python-sphinx-cloud-sptheme") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "cloud_sptheme" version)) + (sha256 + (base32 + "1dniqb6a39yh786f86c4jn666rwnyi1jvzn4616zhcchb7sfdshd")))) + (build-system python-build-system) + ;; FIXME: The 'pypi' release archive does not contain tests. + (arguments '(#:tests? #f)) + (native-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://bitbucket.org/ecollins/cloud_sptheme") + (synopsis "'Cloud' theme for Sphinx documenter") + (description "This package contains the \"Cloud\" theme for Sphinx and some +related extensions.") + (license license:bsd-3))) + +(define-public python2-sphinx-cloud-sptheme + (package-with-python2 python-sphinx-cloud-sptheme)) + +(define-public python-sphinx-alabaster-theme + (package + (name "python-sphinx-alabaster-theme") + (version "0.7.12") + (source (origin + (method url-fetch) + (uri (pypi-uri "alabaster" version)) + (sha256 + (base32 + "00nwwjj2d2ym4s2kk217x7jkx1hnczc3fvm8yxbqmsp6b0nxfqd6")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pygments" ,python-pygments))) + (home-page "https://alabaster.readthedocs.io/") + (synopsis "Configurable sidebar-enabled Sphinx theme") + (description "Alabaster is a visually (c)lean, responsive, configurable +theme for the Sphinx documentation system. It's the default theme of Sphinx.") + (license license:bsd-3))) + +(define-public python2-sphinx-alabaster-theme + (package-with-python2 python-sphinx-alabaster-theme)) + +(define-public python-setproctitle +(package + (name "python-setproctitle") + (version "1.1.10") + (source + (origin + (method url-fetch) + (uri (pypi-uri "setproctitle" version)) + (sha256 + (base32 + "163kplw9dcrw0lffq1bvli5yws3rngpnvrxrzdw89pbphjjvg0v2")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'check 'patch-Makefile + ;; Stricly this is only required for the python2 variant. + ;; But adding a phase in an inherited package seems to be + ;; cumbersum. So we patch even for python3. + (lambda _ + (let ((nose (assoc-ref %build-inputs "python2-nose"))) + (when nose + (substitute* "Makefile" + (("\\$\\(PYTHON\\) [^ ]which nosetests[^ ] ") + (string-append nose "/bin/nosetests ")))) + #t))) + (replace 'check + (lambda _ + (setenv "PYTHON" (or (which "python3") (which "python"))) + (setenv "PYCONFIG" (or (which "python3-config") + (which "python-config"))) + (setenv "CC" "gcc") + ;; No need to extend PYTHONPATH to find the built package, since + ;; the Makefile will build anyway + (invoke "make" "check")))))) + (native-inputs + `(("procps" ,procps))) ; required for tests + (home-page + "https://github.com/dvarrazzo/py-setproctitle") + (synopsis + "Setproctitle implementation for Python to customize the process title") + (description "The library allows a process to change its title (as displayed +by system tools such as ps and top). + +Changing the title is mostly useful in multi-process systems, for +example when a master process is forked: changing the children's title +allows to identify the task each process is busy with. The technique +is used by PostgreSQL and the OpenSSH Server for example.") + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-setproctitle)))))) + +(define-public python2-setproctitle + (let ((base (package-with-python2 + (strip-python2-variant python-setproctitle)))) + (package + (inherit base) + (native-inputs `(("python2-nose" ,python2-nose) + ,@(package-native-inputs base)))))) + +(define-public python-validictory + (package + (name "python-validictory") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "validictory" version)) + (sha256 + (base32 + "1zf1g9sw47xzp5f80bd94pb42j9yqv82lcrgcvdwr6nkaphfi37q")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'bootstrap + ;; Move the tests out of the package directory to avoid + ;; packaging them. + (lambda* _ + (rename-file "validictory/tests" "tests") + (delete-file "tests/__init__.py"))) + (replace 'check + (lambda _ + ;; Extend PYTHONPATH so the built package will be found. + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + (zero? (system* "py.test" "-vv" ))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page + "https://github.com/jamesturk/validictory") + (synopsis "General purpose Python data validator") + (description "It allows validation of arbitrary Python data structures. + +The schema format is based on the JSON Schema +proposal (http://json-schema.org), so combined with json the library is also +useful as a validator for JSON data.") + (license license:expat))) + +(define-public python2-validictory + (package-with-python2 python-validictory)) + +(define-public python-pyelftools + (package + (name "python-pyelftools") + (version "0.25") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyelftools" version)) + (sha256 + (base32 + "090vdksbz341f7ljvr0zswblw4lspa8qaiikzyjkf318arpxmil9")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'set-pythonpath + (lambda _ + (setenv "PYTHONPATH" + (string-append + (getcwd) "/test/" + ":" (getenv "PYTHONPATH"))) + #t))))) + (home-page + "https://github.com/eliben/pyelftools") + (synopsis + "Analyze binary and library file information") + (description "This Python library provides interfaces for parsing and +analyzing two binary and library file formats; the Executable and Linking +Format (ELF), and debugging information in the Debugging With Attributed +Record Format (DWARF).") + (license license:public-domain))) + +(define-public python-pyev + (package + (name "python-pyev") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyev" version)) + (sha256 + (base32 + "0rf603lc0s6zpa1nb25vhd8g4y337wg2wyz56i0agsdh7jchl0sx")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; no test suite + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch + (lambda* (#:key inputs #:allow-other-keys) + (let ((libev (string-append (assoc-ref inputs "libev") + "/lib/libev.so.4"))) + (substitute* "setup.py" + (("libev_dll_name = find_library\\(\\\"ev\\\"\\)") + (string-append "libev_dll_name = \"" libev "\""))))))))) + (inputs + `(("libev" ,libev))) + (home-page "http://pythonhosted.org/pyev/") + (synopsis "Python libev interface") + (description "Pyev provides a Python interface to libev.") + (license license:gpl3))) + +(define-public python2-pyev + (package-with-python2 python-pyev)) + +(define-public python-imagesize + (package + (name "python-imagesize") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "imagesize" version)) + (sha256 + (base32 + "1dg3wn7qpwmhgqc0r9na2ding1wif9q5spz3j9zn2riwphc2k0zk")))) + (build-system python-build-system) + (home-page "https://github.com/shibukawa/imagesize_py") + (synopsis "Gets image size of files in various formats in Python") + (description + "This package allows determination of image size from +PNG, JPEG, JPEG2000 and GIF files in pure Python.") + (license license:expat))) + +(define-public python2-imagesize + (package-with-python2 python-imagesize)) + +(define-public python-termstyle + (package + (name "python-termstyle") + (version "0.1.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "termstyle" version)) + (sha256 + (base32 + "17wzkkcqy5zc0g68xlad3kcv66iw14d2pwqc0h9420gak0vbhx7g")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "python" "test3.py"))))))) + (home-page "https://github.com/gfxmonk/termstyle") + (synopsis "Console text coloring for Python") + (description "This package provides console text coloring for Python.") + (license license:bsd-3))) + +(define-public python-argcomplete + (package + (name "python-argcomplete") + (version "1.7.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "argcomplete" version)) + (sha256 + (base32 + "11bwiw6j0nilgz81xnw6f1npyga3prp8asjqrm87cdr3ria5l03x")))) + (build-system python-build-system) + (native-inputs + `(("python-pexpect" ,python-pexpect) + ("tcsh" ,tcsh) + ("bash-full" ,bash))) ;full Bash for 'test_file_completion' + (home-page "https://github.com/kislyuk/argcomplete") + (synopsis "Shell tab completion for Python argparse") + (description "argcomplete provides extensible command line tab completion +of arguments and options for Python scripts using @code{argparse}. It's +particularly useful for programs with many options or sub-parsers that can +dynamically suggest completions; for example, when browsing resources over the +network.") + (license license:asl2.0))) + +(define-public python2-argcomplete + (package-with-python2 python-argcomplete)) + +(define-public python-xopen + (package + (name "python-xopen") + (version "0.3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xopen" version)) + (sha256 + (base32 + "1a0wbil552wsmklwd89ssmgz3pjd86qa9i7jh8wqb9wslc8a2qjr")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system python-build-system) + (home-page "https://github.com/marcelm/xopen/") + (synopsis "Open compressed files transparently") + (description "This module provides an @code{xopen} function that works like +Python's built-in @code{open} function, but can also deal with compressed files. +Supported compression formats are gzip, bzip2 and, xz, and are automatically +recognized by their file extensions. The focus is on being as efficient as +possible on all supported Python versions.") + (license license:expat))) + +(define-public python2-xopen + (let ((base (package-with-python2 + (strip-python2-variant python-xopen)))) + (package + (inherit base) + (propagated-inputs `(("python2-bz2file" ,python2-bz2file) + ,@(package-propagated-inputs base)))))) + +(define-public python-cheetah + (package + (name "python-cheetah") + (version "3.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Cheetah3" version)) + (sha256 + (base32 + "1ihag9cxll6b86fc8v5lkhmr3brdbi4yiz16zpgw79yylmv8fgr9")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26)) + #:phases (modify-phases %standard-phases + (add-after 'unpack 'use-absolute-python + (lambda _ + (substitute* "Cheetah/CheetahWrapper.py" + (("#!/usr/bin/env python") + (string-append "#!" (which "python")))) + #t)) + (replace 'check + (lambda _ + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append + cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" (getenv "PYTHONPATH"))) + (setenv "PATH" + (string-append (getenv "PATH") + ":" cwd "/bin")) + (setenv "TMPDIR" "/tmp") + + (substitute* "Cheetah/Tests/Test.py" + (("unittest.TextTestRunner\\(\\)") + "unittest.TextTestRunner(verbosity=2)")) + + (invoke "python" "Cheetah/Tests/Test.py"))))))) + (propagated-inputs + `(("python-markdown" ,python-markdown))) ;optional + (home-page "http://cheetahtemplate.org/") + (synopsis "Template engine") + (description "Cheetah is a text-based template engine and Python code +generator. + +Cheetah can be used as a standalone templating utility or referenced as +a library from other Python applications. It has many potential uses, +but web developers looking for a viable alternative to ASP, JSP, PHP and +PSP are expected to be its principle user group. + +Features: +@enumerate +@item Generates HTML, SGML, XML, SQL, Postscript, form email, LaTeX, or any other + text-based format. +@item Cleanly separates content, graphic design, and program code. +@item Blends the power and flexibility of Python with a simple template language + that non-programmers can understand. +@item Gives template writers full access to any Python data structure, module, + function, object, or method in their templates. +@item Makes code reuse easy by providing an object-orientated interface to + templates that is accessible from Python code or other Cheetah templates. + One template can subclass another and selectively reimplement sections of it. +@item Provides a simple, yet powerful, caching mechanism that can dramatically + improve the performance of a dynamic website. +@item Compiles templates into optimized, yet readable, Python code. +@end enumerate") + (license (license:x11-style "file://LICENSE")))) + +(define-public python2-cheetah + (package-with-python2 python-cheetah)) + +(define-public python-dulwich + (package + (name "python-dulwich") + (version "0.18.6") + (source + (origin + (method url-fetch) + (uri (list (string-append "https://www.dulwich.io/releases/" + "dulwich-" version ".tar.gz") + (pypi-uri "dulwich" version))) + (sha256 + (base32 + "1aa1xfrxkc3j9s4xi0llhf5gndyi9ryprcxsqfa5fcb8ph34981q")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'fix-tests + (lambda* (#:key inputs #:allow-other-keys) + ;; The tests use Popen with a custom environment which doesn't + ;; include PATH. + (substitute* "dulwich/tests/compat/utils.py" + (("'git'") (string-append "'" + (which "git") + "'"))) + (substitute* '("dulwich/tests/test_repository.py" + "dulwich/tests/test_hooks.py") + (("#!/bin/sh") (string-append "#!" (which "sh")))) + (setenv "TEST_RUNNER" "unittest") + (setenv "PYTHONHASHSEED" "random") + #t))))) + (propagated-inputs + `(("python-fastimport" ,python-fastimport))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-geventhttpclient" ,python-geventhttpclient) + ("git" ,git))) + (home-page "https://www.dulwich.io/") + (synopsis "Git implementation in Python") + (description "Dulwich is an implementation of the Git file formats and +protocols written in pure Python.") + ;; Can be used with either license. + (license (list license:asl2.0 license:gpl2+)))) + +(define-public python2-dulwich + (package-with-python2 python-dulwich)) + +(define-public python-pbkdf2 + (package + (name "python-pbkdf2") + (version "1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pbkdf2" version)) + (sha256 + (base32 + "0yb99rl2mbsaamj571s1mf6vgniqh23v98k4632150hjkwv9fqxc")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + (zero? (system* "python" "test/test_pbkdf2.py"))))))) + (propagated-inputs + `(("python-pycrypto" ,python-pycrypto))) ; optional + (home-page "https://www.dlitz.net/software/python-pbkdf2/") + (synopsis "Password-based key derivation") + (description "This module implements the password-based key derivation +function, PBKDF2, specified in RSA PKCS#5 v2.0. + +PKCS#5 v2.0 Password-Based Key Derivation is a key derivation function which +is part of the RSA Public Key Cryptography Standards series. The provided +implementation takes a password or a passphrase and a salt value (and +optionally a iteration count, a digest module, and a MAC module) and provides +a file-like object from which an arbitrarly-sized key can be read.") + (license license:expat))) + +(define-public python2-pbkdf2 + (package-with-python2 python-pbkdf2)) + +(define-public python-qrcode + (package + (name "python-qrcode") + (version "6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "qrcode" version)) + (sha256 + (base32 + "1gz1g2n9kqwqkak78aavr354z1v3yyiksk7q6xp5hi1zr6s0syq3")))) + (build-system python-build-system) + (arguments + ;; FIXME: Tests require packaging 'pymaging'. + '(#:tests? #f)) + (propagated-inputs + `(("python-lxml" ,python-lxml) ; for SVG output + ("python-pillow" ,python-pillow) ; for PNG output + ("python-six" ,python-six))) + (inputs + `(;; The setup.cfg file needs to be used, and support for this requires + ;; at least version 30.3.0 of setuptools + ("python-setuptools" ,python-setuptools))) + (home-page "https://github.com/lincolnloop/python-qrcode") + (synopsis "QR Code image generator") + (description "This package provides a pure Python QR Code generator +module. It uses the Python Imaging Library (PIL) to allow for the generation +of QR Codes. + +In addition this package provides a command line tool to generate QR codes and +either write these QR codes to a file or do the output as ascii art at the +console.") + (license license:bsd-3))) + +(define-public python2-qrcode + (package-with-python2 python-qrcode)) + +(define-public python-rst2ansi + (package + (name "python-rst2ansi") + (version "0.1.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rst2ansi" version)) + (sha256 + (base32 + "0vzy6gd60l79ff750scl0sz48r1laalkl6md6dwzah4dcadgn5qv")))) + (build-system python-build-system) + (propagated-inputs + `(("python-docutils" ,python-docutils))) + (home-page "https://github.com/Snaipe/python-rst-to-ansi") + (synopsis "Convert RST to ANSI-decorated console output") + (description + "Python module dedicated to rendering RST (reStructuredText) documents +to ansi-escaped strings suitable for display in a terminal.") + (license license:expat))) + +(define-public python-ansi2html + (package + (name "python-ansi2html") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ansi2html" version)) + (sha256 + (base32 + "1wa00zffprb78w1mqq90dk47czz1knanys2a40zbw2vyapd5lp9y")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose))) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/ralphbean/ansi2html") + (synopsis "Convert ANSI-decorated console output to HTML") + (description + "@command{ansi2html} is a Python library and command line utility for +convering text with ANSI color codes to HTML or LaTeX.") + (license license:gpl3+))) + +(define-public python2-ansi2html + (package-with-python2 python-ansi2html)) + +(define-public python-ddt + (package + (name "python-ddt") + (version "1.1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ddt" version)) + (sha256 + (base32 + "1lw17420iimhghkgzgax85nn8d1an2d6k2cfvb7j5kwn2dqlr1vk")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose))) + (propagated-inputs + `(("python-six" ,python-six) + ("python-pyyaml" ,python-pyyaml))) + (home-page "https://github.com/txels/ddt") + (synopsis "Data-Driven Tests") + (description + "Data-Driven Tests (@dfn{DDT}) allow you to multiply one test case by +running it with different test data, and make it appear as multiple test +cases.") + (license license:expat))) + +(define-public python2-ddt + (package-with-python2 python-ddt)) + +(define-public python-pycountry + (package + (name "python-pycountry") + (version "18.5.26") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pycountry" version)) + (sha256 + (base32 + "15q9j047s3yc9cfcxq1ch8b71f81na44cr6dydd5gxk0ki9a4akz")))) + (build-system python-build-system) + (home-page "https://bitbucket.org/flyingcircus/pycountry") + (synopsis "ISO databases for languages, countries, currencies, etc.") + (description + "@code{pycountry} provides the ISO databases for the standards: +@enumerate +@item 639-3 (Languages) +@item 3166 (Countries) +@item 3166-3 (Deleted Countries) +@item 3166-2 (Subdivisions of countries) +@item 4217 (Currencies) +@item 15924 (Scripts) +@end enumerate +It includes a copy from Debian’s pkg-isocodes and makes the data accessible +through a Python API.") + (license license:lgpl2.1+))) + +(define-public python2-pycountry + (package-with-python2 python-pycountry)) + +(define-public python-pycosat + (package + (name "python-pycosat") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pycosat" version)) + (sha256 + (base32 + "1kl3wh1f47rc712n4bmwplbx3fqz3x9i1b587jrbpmvdva4c8f6l")))) + ;; TODO: Unundle picosat. http://fmv.jku.at/picosat/ + (build-system python-build-system) + (home-page "https://github.com/ContinuumIO/pycosat") + (synopsis "Bindings to picosat (a SAT solver)") + (description + "This package provides efficient Python bindings to @code{picosat} on +the C level. When importing pycosat, the @code{picosat} solver becomes part +of the Python process itself. @code{picosat} is a @dfn{Boolean Satisfiability +Problem} (SAT) solver.") + (license license:expat))) + +(define-public python2-pycosat + (package-with-python2 python-pycosat)) + +(define-public python2-ruamel.ordereddict + (package + (name "python2-ruamel.ordereddict") + (version "0.4.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ruamel.ordereddict" version)) + (sha256 + (base32 + "1xmkl8v9l9inm2pyxgc1fm5005yxm7fkd5gv74q7lj1iy5qc8n3h")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (zero? (system* "python" "test/testordereddict.py"))))))) + (home-page "https://bitbucket.org/ruamel/ordereddict") + (synopsis "Version of dict that keeps keys in insertion order") + (description + "This is an implementation of an ordered dictionary with @dfn{Key +Insertion Order} (KIO: updates of values do not affect the position of the +key), @dfn{Key Value Insertion Order} (KVIO, an existing key's position is +removed and put at the back). The standard library module @code{OrderedDict}, +implemented later, implements a subset of @code{ordereddict} functionality. +Sorted dictionaries are also provided. Currently only with @dfn{Key Sorted +Order} (KSO, no sorting function can be specified, but a transform can be +specified to apply on the key before comparison (e.g. @code{string.lower})).") + (license license:expat))) + +(define-public python-pypeg2 + (package + (name "python-pypeg2") + (version "2.15.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyPEG2" version)) + (sha256 + (base32 + "0v8ziaam2r637v94ra4dbjw6jzxz99gs5x4i585kgag1v204yb9b")))) + (build-system python-build-system) + (propagated-inputs `(("python-lxml" ,python-lxml))) + (arguments + ;;https://bitbucket.org/fdik/pypeg/issues/36/test-failures-on-py35 + '(#:tests? #f)) + (home-page "https://fdik.org/pyPEG/") + (synopsis "Parsering Expression Grammars in Python") + (description "PyPEG is an intrinsic parser interpreter framework for +Python. It is based on Parsing Expression Grammars, PEG. With pyPEG you can +parse many formal languages.") + (license license:gpl2))) + +(define-public python-incremental + (package + (name "python-incremental") + (version "17.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "incremental" version)) + (sha256 + (base32 + "1cylxdz1cnkm5g3pklna3h2n0i0rks95ir1pnpxfnvpkmab1cxbv")))) + (build-system python-build-system) + (home-page "https://github.com/hawkowl/incremental") + (synopsis "Library for versioning Python projects") + (description "Incremental is a small library that versions your Python +projects.") + (license license:expat))) + +(define-public python2-incremental + (package-with-python2 python-incremental)) + +(define-public python-invoke + (package + (name "python-invoke") + (home-page "http://www.pyinvoke.org/") + (version "1.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "invoke" version)) + (sha256 + (base32 + "0aiy1xvk1f91246zxd1zqrm679vdvd10h843a2na41cqr3cflpi6")))) + (build-system python-build-system) + (arguments + ;; XXX: Requires many dependencies that are not yet in Guix. + `(#:tests? #f)) + (synopsis "Pythonic task execution") + (description + "Invoke is a Python task execution tool and library, drawing inspiration +from various sources to arrive at a powerful and clean feature set. It is +evolved from the Fabric project, but focuses on local and abstract concerns +instead of servers and network commands.") + (license license:bsd-3))) + +(define-public python2-invoke + (package-with-python2 python-invoke)) + +(define-public python-automat + (package + (name "python-automat") + (version "0.6.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "Automat" version)) + (sha256 + (base32 + "1a7nsrljysfmdqmpn2apfa1gg6rfah4y9sizvns8gb08rx7d07rw")))) + (build-system python-build-system) + ;; We disable the tests because they require python-twisted, while + ;; python-twisted depends on python-automat. Twisted is optional, but the + ;; tests fail if it is not available. Also see + ;; <https://github.com/glyph/automat/issues/71>. + (arguments '(#:tests? #f)) + (native-inputs + `(("python-m2r" ,python-m2r) + ("python-setuptools-scm" ,python-setuptools-scm) + ("python-graphviz" ,python-graphviz))) + (propagated-inputs + `(("python-six" ,python-six) + ("python-attrs" ,python-attrs))) + (home-page "https://github.com/glyph/Automat") + (synopsis "Self-service finite-state machines") + (description "Automat is a library for concise, idiomatic Python +expression of finite-state automata (particularly deterministic finite-state +transducers).") + (license license:expat))) + +(define-public python2-automat + (package-with-python2 python-automat)) + +(define-public python-m2r + (package + (name "python-m2r") + (version "0.1.12") + (source (origin + (method url-fetch) + (uri (pypi-uri "m2r" version)) + (sha256 + (base32 + "1axrwnf425sz4qz3c0qc7yhhki4myzb8rki7pczcsgzznzmqdyxd")))) + (build-system python-build-system) + (propagated-inputs + `(("python-docutils" ,python-docutils) + ("python-mistune" ,python-mistune))) + (native-inputs + `(("python-pygments" ,python-pygments) + ("python-mock" ,python-mock))) + (home-page "https://github.com/miyakogi/m2r") + (synopsis "Markdown to reStructuredText converter") + (description "M2R converts a markdown file including reST markups to valid +reST format.") + (license license:expat))) + +(define-public python2-m2r + (package-with-python2 python-m2r)) + +(define-public python-constantly + (package + (name "python-constantly") + (version "15.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "constantly" version)) + (sha256 + (base32 + "0dgwdla5kfpqz83hfril716inm41hgn9skxskvi77605jbmp4qsq")))) + (build-system python-build-system) + (home-page "https://github.com/twisted/constantly") + (synopsis "Symbolic constants in Python") + (description "Constantly is a Python library that provides symbolic +constant support. It includes collections and constants with text, numeric, +and bit flag values.") + (license license:expat))) + +(define-public python2-constantly + (package-with-python2 python-constantly)) + +(define-public python-attrs + (package + (name "python-attrs") + (version "18.2.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "attrs" version)) + (sha256 + (base32 + "0s9ydh058wmmf5v391pym877x4ahxg45dw6a0w4c7s5wgpigdjqh")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26)) + #:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append + cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH"))) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-hypothesis" ,python-hypothesis) + ("python-pympler" ,python-pympler) + ("python-pytest" ,python-pytest) + ("python-six" ,python-six) + ("python-sphinx" ,python-sphinx) + ("python-zope-interface" ,python-zope-interface))) + (home-page "https://github.com/python-attrs/attrs/") + (synopsis "Attributes without boilerplate") + (description "@code{attrs} is a Python package with class decorators that +ease the chores of implementing the most common attribute-related object +protocols.") + (license license:expat))) + +(define-public python2-attrs + (package-with-python2 python-attrs)) + +(define-public python-attrs-bootstrap + (package + (inherit python-attrs) + (name "python-attrs-bootstrap") + ;; Keep this on a fixed version so python-attrs can be updated without + ;; triggering a mass-rebuild. FIXME: Update this in the next rebuild cycle. + (version "17.4.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "attrs" version)) + (sha256 + (base32 + "1jafnn1kzd6qhxgprhx6y6ik1r5m2rilx25syzcmq03azp660y8w")))) + (native-inputs `()) + (arguments `(#:tests? #f)))) + +(define-public python2-attrs-bootstrap + (package-with-python2 python-attrs-bootstrap)) + +(define-public python2-cliapp + (package + (name "python2-cliapp") + (version "1.20170823") + (source + (origin + (method url-fetch) + (uri (string-append + "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/cliapp/snapshot/cliapp-" + version ".tar.gz")) + (sha256 + (base32 + "1i9gik0xrj6jmi95s5w988jl1y265baz5xm5pbqdyvsh8h9ln6yq")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + ;; check phase needs to be run before the build phase. If not, + ;; coverage-test-runner looks for tests for the built source files, + ;; and fails. + (delete 'check) + (add-before 'build 'check + (lambda _ + ;; Disable python3 tests + (substitute* "check" + (("python3") "# python3")) + (zero? (system* "./check"))))))) + (native-inputs + `(("python2-coverage-test-runner" ,python2-coverage-test-runner) + ("python2-pep8" ,python2-pep8))) + (propagated-inputs + `(("python2-pyaml" ,python2-pyaml))) + (home-page "https://liw.fi/cliapp/") + (synopsis "Python framework for command line programs") + (description "@code{python2-cliapp} is a python framework for +command line programs. It contains the typical stuff such programs +need to do, such as parsing the command line for options, and +iterating over input files.") + (license license:gpl2+))) + +(define-public python2-ttystatus + (package + (name "python2-ttystatus") + (version "0.35") + (source + (origin + (method url-fetch) + (uri (string-append + "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/ttystatus/snapshot/ttystatus-" + version ".tar.gz")) + (sha256 + (base32 + "0vivqbw7ddhsq1zj3g9cvvv4f0phl0pis2smsnwcr2szz2fk3hl6")))) + (build-system python-build-system) + (native-inputs + `(("python2-coverage-test-runner" ,python2-coverage-test-runner) + ("python2-pep8" ,python2-pep8))) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + ;; check phase needs to be run before the build phase. If not, + ;; coverage-test-runner looks for tests for the built source files, + ;; and fails. + (delete 'check) + (add-before 'build 'check + (lambda _ + (zero? (system* "make" "check"))))))) + (home-page "https://liw.fi/ttystatus/") + (synopsis "Python library for showing progress reporting and +status updates on terminals") + (description "@code{python2-ttystatus} is a python library for +showing progress reporting and status updates on terminals, for +command line programs. Output is automatically adapted to the width +of the terminal: truncated if it does not fit, and resized if the +terminal size changes.") + (license license:gpl3+))) + +(define-public python2-tracing + (package + (name "python2-tracing") + (version "0.10") + (source + (origin + (method url-fetch) + (uri (string-append + "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/python-tracing/snapshot/tracing-" + version ".tar.gz")) + (sha256 + (base32 + "06cw4zg42fsvqy372vi2whj26w56vzg5axhzwdjc2bgwf03garbw")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (home-page "https://liw.fi/tracing/") + (synopsis "Python debug logging helper") + (description "@code{python2-tracing} is a python library for +logging debug messages. It provides a way to turn debugging messages +on and off, based on the filename they occur in. It is much faster +than using @code{logging.Filter} to accomplish the same thing, which +matters when code is run in production mode. The actual logging still +happens using the @code{logging} library.") + (license license:gpl3+))) + +(define-public python2-larch + (package + (name "python2-larch") + (version "1.20151025") + (source + (origin + (method url-fetch) + (uri (string-append + "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/larch/snapshot/larch-" + version ".tar.gz")) + (patches (search-patches + "python2-larch-coverage-4.0a6-compatibility.patch")) + (sha256 + (base32 + "1p4knkkavlqymgciz2wbcnfrdgdbafhg14maplnk4vbw0q8xs663")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + ;; check phase needs to be run before the build phase. If not, + ;; coverage-test-runner looks for tests for the built source files, + ;; and fails. + (delete 'check) + (add-before 'build 'check + (lambda _ + (zero? (system* "make" "check"))))))) + (native-inputs + `(("cmdtest" ,cmdtest) + ("python2-coverage-test-runner" ,python2-coverage-test-runner))) + (propagated-inputs + `(("python2-tracing" ,python2-tracing))) + (home-page "https://liw.fi/larch/") + (synopsis "Python copy-on-write B-tree library") + (description "@code{python2-larch} is an implementation of +particular kind of B-tree, based on research by Ohad Rodeh. See +@url{http://liw.fi/larch/ohad-btrees-shadowing-clones.pdf} for details +on the data structure. + +The distinctive feature of this B-tree is that a node is never +(conceptually) modified. Instead, all updates are done by +copy-on-write. This makes it easy to clone a tree, and modify only the +clone, while other processes access the original tree.") + (license license:gpl3+))) + +(define-public python-astroid + (package + (name "python-astroid") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astroid" version)) + (sha256 + (base32 + "08hz675knh4294bancdapql392fmbjyimhbyrmfkz1ka7l035c1m")))) + (build-system python-build-system) + (propagated-inputs + `(("python-lazy-object-proxy" ,python-lazy-object-proxy) + ("python-six" ,python-six) + ("python-wrapt" ,python-wrapt))) + (native-inputs + `(("python-dateutil" ,python-dateutil) + ("python-nose" ,python-nose) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-spurious-test + (lambda _ + ;; This can be removed after upgrading from python-3.7 + ;; https://github.com/PyCQA/astroid/issues/593 + ;; https://bugs.python.org/issue34056 + (delete-file "astroid/tests/unittest_modutils.py") + #t)) + (replace 'check + (lambda _ + (invoke "pytest" "astroid")))))) + (home-page "https://github.com/PyCQA/astroid") + (synopsis "Common base representation of python source code for pylint and +other projects") + (description "@code{python-astroid} provides a common base representation +of python source code for projects such as pychecker, pyreverse, pylint, etc. + +It provides a compatible representation which comes from the _ast module. It +rebuilds the tree generated by the builtin _ast module by recursively walking +down the AST and building an extended ast. The new node classes have +additional methods and attributes for different usages. They include some +support for static inference and local name scopes. Furthermore, astroid +builds partial trees by inspecting living objects.") + (license license:lgpl2.1+) + (properties `((python2-variant . ,(delay python2-astroid)))))) + +(define-public python2-astroid + (let ((base (package-with-python2 + (strip-python2-variant python-astroid)))) + (package (inherit base) + ;; Version 2.x removes python2 support. + (version "1.6.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astroid" version)) + (sha256 + (base32 + "0fir4b67sm7shcacah9n61pvq313m523jb4q80sycrh3p8nmi6zw")))) + (arguments + (substitute-keyword-arguments (package-arguments base) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'remove-spurious-test + (lambda _ + ;; https://github.com/PyCQA/astroid/issues/276 + (delete-file "astroid/tests/unittest_brain.py") + #t)) + (replace 'check + (lambda _ + (invoke"python" "-m" "unittest" "discover" + "-p" "unittest*.py"))))))) + (native-inputs `()) + (propagated-inputs + `(("python2-backports-functools-lru-cache" + ,python2-backports-functools-lru-cache) + ("python2-enum34" ,python2-enum34) + ("python2-singledispatch" ,python2-singledispatch) + ,@(package-propagated-inputs base)))))) + +(define-public python-isort + (package + (name "python-isort") + (version "4.2.5") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/timothycrosley/isort/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0zsrgkb0krn5476yncy5dd56k7dk34zqb4bnlvwy44ixgilyjmfh")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/timothycrosley/isort") + (synopsis "Python utility/library to sort python imports") + (description "@code{python-isort} is a python utility/library to sort +imports alphabetically, and automatically separated into sections. It +provides a command line utility, a python library and plugins for various +editors.") + (license license:expat))) + +(define-public python2-isort + (package-with-python2 python-isort)) + +(define-public python2-backports-functools-lru-cache + (package + (name "python2-backports-functools-lru-cache") + (version "1.5") + (source + (origin + (method url-fetch) + ;; only the pypi tarballs contain the necessary metadata + (uri (pypi-uri "backports.functools_lru_cache" version)) + (sha256 + (base32 + "06jgv8gib4fhky0p5cmxdghvsgjyzcdgk48k8pxb1ccf11znk64x")))) + (build-system python-build-system) + (native-inputs + `(("python2-setuptools-scm" ,python2-setuptools-scm))) + (arguments + `(#:python ,python-2)) + (home-page "https://github.com/jaraco/backports.functools_lru_cache") + (synopsis "Backport of functools.lru_cache from Python 3.3") + (description "@code{python2-backports-functools-lru-cache} is a backport +of @code{functools.lru_cache} from python 3.3.") + (license license:expat))) + +(define-public python-configparser + (package + (name "python-configparser") + (version "3.5.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://bitbucket.org/ambv/configparser/get/" + version ".tar.bz2")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0waq40as14abwzbb321hfz4vr1fi363nscy32ga14qvfygrg96wa")))) + (build-system python-build-system) + (home-page "http://docs.python.org/py3k/library/configparser.html") + (synopsis "Backport of configparser from python 3.5") + (description "@code{python-configparser} is a backport of +@code{configparser} from Python 3.5 so that it can be used directly +in other versions.") + (license license:expat))) + +(define-public python2-configparser + (package-with-python2 python-configparser)) + +(define-public python-mando + (package + (name "python-mando") + (version "0.6.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "mando" version)) + (sha256 + (base32 + "0q6rl085q1hw1wic52pqfndr0x3nirbxnhqj9akdm5zhq2fv3zkr")))) + (build-system python-build-system) + (propagated-inputs + `(("python-rst2ansi" ,python-rst2ansi) + ("python-six" ,python-six))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://mando.readthedocs.org/") + (synopsis + "Wrapper around argparse, allowing creation of complete CLI applications") + (description + "This package is a wrapper around argparse, allowing you to write complete CLI +applications in seconds while maintaining all the flexibility.") + (license license:expat))) + +(define-public python2-mando + (package-with-python2 python-mando)) + +(define-public python-fudge + (package + (name "python-fudge") + ;; 0.9.6 is the latest version suitable for testing the "fabric" Python 2 + ;; package, which is currently the only use of this package. + (version "0.9.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fudge" version)) + (sha256 + (base32 + "185ia3vr3qk4f2s1a9hdxb8ci4qc0x0xidrad96pywg8j930qs9l")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;XXX: Tests require the NoseJS Python package. + (home-page "https://github.com/fudge-py/fudge") + (synopsis "Replace real objects with fakes/mocks/stubs while testing") + (description + "Fudge is a Python module for using fake objects (mocks and stubs) to +test real ones. + +In readable Python code, you declare the methods available on your fake object +and how they should be called. Then you inject that into your application and +start testing. This declarative approach means you don’t have to record and +playback actions and you don’t have to inspect your fakes after running code. +If the fake object was used incorrectly then you’ll see an informative +exception message with a traceback that points to the culprit.") + (license license:expat))) + +(define-public python2-fudge + (package-with-python2 python-fudge)) + +(define-public python-mwclient + (package + (name "python-mwclient") + (version "0.8.4") + (source + (origin + (method url-fetch) + ;; The PyPI version wouldn't contain tests. + (uri (string-append "https://github.com/mwclient/mwclient/archive/" + "v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1jj0yhilkjir00719fc7w133x7hdyhkxhk6xblla4asig45klsfv")))) + (build-system python-build-system) + (propagated-inputs + `(("python-requests" ,python-requests) + ("python-requests-oauthlib" + ,python-requests-oauthlib) + ("python-six" ,python-six))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest) + ("python-pytest-pep8" ,python-pytest-pep8) + ("python-pytest-cache" ,python-pytest-cache) + ("python-pytest-cov" ,python-pytest-cov) + ("python-responses" ,python-responses))) + (home-page "https://github.com/btongminh/mwclient") + (synopsis "MediaWiki API client") + (description "This package provides a MediaWiki API client.") + (license license:expat))) + +(define-public python2-mwclient + (package-with-python2 python-mwclient)) + +(define-public python-utils + (package + (name "python-utils") + (version "2.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "python-utils" version)) + (sha256 + (base32 + "1mcsy6q5am4ya72rgkpb6kax6vv7c93cfkkas89xnpa4sj9zf28p")))) + (build-system python-build-system) + (native-inputs + `(("pytest-runner" ,python-pytest-runner) + ("pytest" ,python-pytest) + ("six" ,python-six))) + (home-page "https://github.com/WoLpH/python-utils") + (synopsis "Convenient utilities not included with the standard Python install") + (description + "Python Utils is a collection of small Python functions and classes which +make common patterns shorter and easier.") + (license license:bsd-2))) + +(define-public python2-utils + (package-with-python2 python-utils)) + +(define-public python-sphinx-me + (package + (name "python-sphinx-me") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sphinx-me" version)) + (sha256 + (base32 + "06jzgp213zihnvpcy2y5jy3ykid3apc2ncp2pg6a2g05lhiziglq")))) + (build-system python-build-system) + (home-page "https://github.com/stephenmcd/sphinx-me") + (synopsis "Create a Sphinx documentation shell") + (description + "Create a Sphinx documentation shell for your project and include the +README file as the documentation index. It handles extracting the required +meta data such as the project name, author and version from your project for +use in your Sphinx docs.") + (license license:bsd-2))) + +(define-public python2-sphinx-me + (package-with-python2 python-sphinx-me)) + +(define-public python-diff-match-patch + (package + (name "python-diff-match-patch") + (version "20121119") + (source + (origin + (method url-fetch) + (uri (pypi-uri "diff-match-patch" version)) + (sha256 + (base32 + "0k1f3v8nbidcmmrk65m7h8v41jqi37653za9fcs96y7jzc8mdflx")))) + (build-system python-build-system) + (home-page "https://code.google.com/p/google-diff-match-patch") + (synopsis "Synchronize plain text") + (description "Diff Match and Patch libraries offer robust algorithms to +perform the operations required for synchronizing plain text.") + (license license:asl2.0))) + +(define-public python2-diff-match-patch + (package-with-python2 python-diff-match-patch)) + +(define-public python-dirsync + (package + (name "python-dirsync") + (version "2.2.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dirsync" version)) + (sha256 + (base32 + "1r40fkanksagcszf1ag85mdr8w7rgc7196n6s1qlsk2abw6i7v0z")))) + (build-system python-build-system) + (propagated-inputs + `(("six" ,python-six))) + (home-page "https://bitbucket.org/tkhyn/dirsync") + (synopsis "Advanced directory tree synchronisation tool") + (description "Advanced directory tree synchronisation tool.") + (license license:expat))) + +(define-public python2-dirsync + (package-with-python2 python-dirsync)) + +(define-public python-levenshtein + (package + (name "python-levenshtein") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-Levenshtein" version)) + (sha256 + (base32 + "1c9ybqcja31nghfcc8xxbbz9h60s9qi12b9hr4jyl69xbvg12fh3")))) + (build-system python-build-system) + (home-page "https://github.com/ztane/python-Levenshtein") + (synopsis "Fast computation of Levenshtein distance and string similarity") + (description + "The Levenshtein Python C extension module contains functions for fast computation of +@enumerate +@item Levenshtein (edit) distance, and edit operations +@item string similarity +@item approximate median strings, and generally string averaging +@item string sequence and set similarity +@end enumerate +It supports both normal and Unicode strings.") + (license license:gpl2+))) + +(define-public python2-levenshtein + (package-with-python2 python-levenshtein)) + +(define-public python-scandir + (package + (name "python-scandir") + (version "1.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "scandir" version)) + (sha256 + (base32 "0r3hvf1a9jm1rkqgx40gxkmccknkaiqjavs8lccgq9s8khh5x5s4")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "python" "test/run_tests.py")))))) + (home-page "https://github.com/benhoyt/scandir") + (synopsis "Directory iteration function") + (description + "Directory iteration function like os.listdir(), except that instead of +returning a list of bare filenames, it yields DirEntry objects that include +file type and stat information along with the name. Using scandir() increases +the speed of os.walk() by 2-20 times (depending on the platform and file +system) by avoiding unnecessary calls to os.stat() in most cases. + +This package is part of the Python standard library since version 3.5.") + (license license:bsd-3))) + +(define-public python2-scandir + (package-with-python2 python-scandir)) + +(define-public python2-stemming + (package + (name "python2-stemming") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "stemming" version)) + (sha256 + (base32 "0ldwa24gnnxhniv0fhygkpc2mwgd93q10ag8rvzayv6hw418frsr")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (home-page "https://bitbucket.org/mchaput/stemming/overview") + (synopsis "Python implementations of various stemming algorithms") + (description + "Python implementations of the Porter, Porter2, Paice-Husk, and Lovins +stemming algorithms for English. These implementations are straightforward and +efficient, unlike some Python versions of the same algorithms available on the +Web. This package is an extraction of the stemming code included in the Whoosh +search engine.") + (license license:public-domain))) + +(define-public python-factory-boy + (package + (name "python-factory-boy") + (version "2.8.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "factory_boy" version)) + (sha256 + (base32 "1fvin6san5xsjh2c4y18caj2lnmwxlylyqm8mh1yc6rp38wlwr56")))) + (build-system python-build-system) + (arguments + ;; Tests are not included in the tarball. + `(#:tests? #f)) + (propagated-inputs + `(("faker" ,python-faker))) + (home-page "https://github.com/benhoyt/scandir") + (synopsis "Versatile test fixtures replacement") + (description + "Factory_boy is a fixtures replacement based on thoughtbot’s factory_girl. + +As a fixtures replacement tool, it aims to replace static, hard to maintain +fixtures with easy-to-use factories for complex object. + +Instead of building an exhaustive test setup with every possible combination +of corner cases, factory_boy allows you to use objects customized for the +current test, while only declaring the test-specific fields") + (license license:expat))) + +(define-public python2-factory-boy + (package-with-python2 python-factory-boy)) + +(define-public python-translate-toolkit + (package + (name "python-translate-toolkit") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "translate-toolkit" version ".tar.bz2")) + (sha256 + (base32 "1vlkwrg83vb17jc36pmwh2b7jphwf390lz0jw8hakcg16qhwypvq")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-sphinx" ,python-sphinx))) + (propagated-inputs + `(("python-babel" ,python-babel) + ("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-chardet" ,python-chardet) + ("python-diff-match-patch" ,python-diff-match-patch) + ("python-levenshtein" ,python-levenshtein) + ("python-lxml" ,python-lxml) + ("python-six" ,python-six) + ("python-vobject" ,python-vobject) + ("python-pyyaml" ,python-pyyaml))) + (arguments + ;; TODO: tests are not run, because they end with + ;; TypeError: parse() missing 2 required positional arguments: 'tree' and + ;; 'parse_funcs' + ;; during test setup. + `(#:tests? #f)) + (home-page "http://toolkit.translatehouse.org") + (synopsis "Tools and API for translation and localization engineering") + (description + "Tools and API for translation and localization engineering. It contains +several utilities, as well as an API for building localization tools.") + (license license:gpl2+))) + +(define-public python2-translate-toolkit + (package-with-python2 python-translate-toolkit)) + +(define-public python-packaging + (package + (name "python-packaging") + (version "18.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "packaging" version)) + (sha256 + (base32 + "01wq9c53ix5rz6qg2c98gy8n4ff768rmanifm8m5jpjiaizj51h8")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "py.test" "-vv")))))) + (native-inputs + `(("python-pretend" ,python-pretend) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-pyparsing" ,python-pyparsing) + ("python-six" ,python-six))) + (home-page "https://github.com/pypa/packaging") + (synopsis "Core utilities for Python packages") + (description "Packaging is a Python module for dealing with Python packages. +It offers an interface for working with package versions, names, and dependency +information.") + ;; From 'LICENSE': This software is made available under the terms of + ;; *either* of the licenses found in LICENSE.APACHE or LICENSE.BSD. + ;; Contributions to this software is made under the terms of *both* these + ;; licenses. + (license (list license:asl2.0 license:bsd-2)))) + +(define-public python2-packaging + (package-with-python2 python-packaging)) + +(define-public python-relatorio + (package + (name "python-relatorio") + (version "0.8.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "relatorio" version)) + (sha256 + (base32 + "1na6hlhz1awi1hbjg1gyclq0khz42iz90wvdjw7mmj655788bpxx")))) + (build-system python-build-system) + (propagated-inputs + `(("python-lxml" ,python-lxml) + ("python-genshi" ,python-genshi))) + (native-inputs + `(("python-magic" ,python-magic))) + (home-page "https://relatorio.tryton.org/") + (synopsis "Templating library able to output ODT and PDF files") + (description "Relatorio is a templating library which provides a way to +easily output ODT, ODS, PNG, SVG and several other kinds of files. Support +for more filetypes can be easily added by creating plugins for them.") + (license license:gpl3+))) + +(define-public python2-relatorio + (package-with-python2 python-relatorio)) + +(define-public python-radon + (package + (name "python-radon") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "radon" version)) + (sha256 + (base32 + "07gq5hq4nrffxnlnksws9hrx7fd001gam63j62i82gyfr23gvdym")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "python" "radon/tests/run.py")))))) + (propagated-inputs + `(("python-colorama" ,python-colorama) + ("python-flake8-polyfill" ,python-flake8-polyfill) + ("python-mando" ,python-mando))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-mock" ,python-pytest-mock))) + (home-page "https://radon.readthedocs.org/") + (synopsis "Code Metrics in Python") + (description "Radon is a Python tool which computes various code metrics. +Supported metrics are: +@itemize @bullet +@item raw metrics: SLOC, comment lines, blank lines, &c. +@item Cyclomatic Complexity (i.e. McCabe’s Complexity) +@item Halstead metrics (all of them) +@item the Maintainability Index (a Visual Studio metric) +@end itemize") + (license license:expat))) + +(define-public python2-radon + (package-with-python2 python-radon)) + +(define-public python-sure + (package + (name "python-sure") + (version "1.4.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sure" version)) + (sha256 + (base32 + "1and0drq8w9iplsic22n2h7hkpyq03a1mbqk4sgcdqhqzdqm539w")))) + (build-system python-build-system) + (propagated-inputs + `(("python-mock" ,python-mock) + ("python-six" ,python-six))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://github.com/gabrielfalcao/sure") + (synopsis "Automated testing library in python for python") + (description + "Sure is a python library that leverages a DSL for writing assertions. +Sure is heavily inspired by @code{RSpec Expectations} and @code{should.js}.") + (license license:gpl3+))) + +(define-public python2-sure + (package-with-python2 python-sure)) + +(define-public python2-couleur + ;; This package does not seem to support python3 at all, hence, + ;; only the python2 variant definition is provided. + (package + (name "python2-couleur") + (version "0.6.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "couleur" version)) + (sha256 + (base32 + "1qqaxyqz74wvid0cr119dhcwz0h0if5b5by44zl49pd5z65v58k1")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (home-page "https://github.com/gabrielfalcao/couleur") + (synopsis + "ANSI terminal tool for python, colored shell and other handy fancy features") + (description + "@code{Couleur} provides python programs a way to use the ANSI features in a unix +terminal such as coloured output in the shell, overwriting output, indentation, etc.") + ;; README.md says ASL2.0, but all source code headers are LGPL3+. + ;; https://github.com/gabrielfalcao/couleur/issues/11 + (license license:lgpl3+))) + +(define-public python-misaka + (package + (name "python-misaka") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "misaka" version)) + (sha256 + (base32 + "1yqrq3a5rracirmvk52n28nn6ckdaz897gnigv89a9gmyn87sqw7")))) + (build-system python-build-system) + (arguments + `(;; Line 37 of setup.py calls self.run_command('develop') + ;; in the 'check' phase. This command seems to be trying + ;; to write to + ;; /gnu/store/...-python-<version>/lib/python<version>/site-packages/ + ;; for which it does not have the permission to write. + #:tests? #f)) + (propagated-inputs + `(("python-cffi" ,python-cffi))) + (home-page "https://github.com/FSX/misaka") + (synopsis "Python binding for Hoedown") + (description + "@code{Misaka} is a CFFI-based binding for @code{Hoedown}, a fast markdown processing +library written in C. It features a fast HTML renderer and functionality to make custom +renderers (e.g. man pages or LaTeX).") + (license license:expat))) + +(define-public python2-misaka + (package-with-python2 python-misaka)) + +(define-public python2-steadymark + ;; This is forced into being a python2 only variant + ;; due to its dependence on couleur that has no support + ;; for python3 + (package + (name "python2-steadymark") + (version "0.7.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "steadymark" version)) + (sha256 + (base32 + "1640i9g8dycql3cc8j0bky0jkzj0q39blfbp4lsgpkprkfgcdk8v")))) + (build-system python-build-system) + (native-inputs + `(("python-couleur" ,python2-couleur) + ("python-sure" ,python2-sure) + ("python-misaka" ,python2-misaka))) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-before 'build 'patch-setup-py + (lambda _ + ;; Update requirements from dependency==version + ;; to dependency>=version + (substitute* "setup.py" + (("==") ">=")) + #t))))) + (home-page "https://github.com/gabrielfalcao/steadymark") + (synopsis "Markdown-based test runner for python") + (description + "@code{Steadymark} allows documentation to be written in github-flavoured +markdown. The documentation may contain snippets of code surrounded by python +code blocks and @code{Steadymark} will find these snippets and run them, making +sure that there are no old malfunctional examples in the documentation examples.") + (license license:expat))) + +(define-public python-jsonpointer + (package + (name "python-jsonpointer") + (version "1.10") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jsonpointer" version)) + (sha256 + (base32 + "1cg0gvgqjysydv6p45v4jywg1jb3v48c7m3cbpi57zgf6nndr9cz")))) + (build-system python-build-system) + (home-page "https://github.com/stefankoegl/python-json-pointer") + (synopsis "Identify specific nodes in a JSON document") + (description "@code{jsonpointer} allows you to access specific nodes +by path in a JSON document (see RFC 6901).") + (license license:bsd-3))) + +(define-public python2-jsonpointer + (package-with-python2 python-jsonpointer)) + +(define-public python-jsonpatch + (package + (name "python-jsonpatch") + (version "1.16") + (source + (origin + (method url-fetch) + ;; pypi version lacks tests.js + (uri (string-append "https://github.com/stefankoegl/python-json-patch/" + "archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "085ykisl8v7mv9h7hvhdy3l2fjzs4214gx32r5k6nx4f76hbv6y5")))) + (build-system python-build-system) + (native-inputs + `(("python-jsonpointer" ,python-jsonpointer))) + (home-page "https://github.com/stefankoegl/python-json-patch") + (synopsis "Applying JSON Patches in Python 2.6+ and 3.x") + (description "@code{jsonpatch} is a library and program that allows +applying JSON Patches according to RFC 6902.") + (license license:bsd-3))) + +(define-public python2-jsonpatch + (package-with-python2 python-jsonpatch)) + +(define-public python-jsonpatch-0.4 + (package (inherit python-jsonpatch) + (name "python-jsonpatch") + (version "0.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/stefankoegl/python-json-patch/" + "archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0j0cd9z9zyp8kppp464jxrfgrnbgkzl1yi10i5gsv8yz6d95929d")))))) + +(define-public python2-jsonpatch-0.4 + (package-with-python2 python-jsonpatch-0.4)) + +(define-public python-rfc3986 + (package + (name "python-rfc3986") + (version "1.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "rfc3986" version)) + (sha256 + (base32 + "06wlmysw83f75ff84zr1yr6n0shvc2xn1n1sb4iwzqap9hf5fn44")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26)) + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH"))) + (invoke "pytest" "-v"))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://rfc3986.readthedocs.io/") + (synopsis "Parse and validate URI references") + (description + "@code{rfc3986} is a Python implementation of RFC@tie{}3986 including +validation and authority parsing. This module also supports RFC@tie{}6874 +which adds support for zone identifiers to IPv6 addresses.") + (license license:asl2.0))) + +(define-public python2-rfc3986 + (package-with-python2 python-rfc3986)) + +(define-public python-rfc3987 + (package + (name "python-rfc3987") + (version "1.3.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rfc3987" version)) + (sha256 + (base32 + "192pclzs2y0yaywqkrlvd0x73740q310kvqvm6jldhi619mq59wi")))) + (build-system python-build-system) + (home-page "https://pypi.python.org/pypi/rfc3987") + (synopsis "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)") + (description "@code{rfc3987} provides routines for parsing and +validation of URIs (see RFC 3986) and IRIs (see RFC 3987).") + (license license:gpl3+))) + +(define-public python2-rfc3987 + (package-with-python2 python-rfc3987)) + +(define-public python-validate-email + (package + (name "python-validate-email") + (version "1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "validate_email" version)) + (sha256 + (base32 + "1bxffaf5yz2cph8ki55vdvdypbwkvn2xr1firlcy62vqbzf1jivq")))) + (build-system python-build-system) + (home-page "https://github.com/syrusakbary/validate_email") + (synopsis "Verifies if an email address is valid and really exists") + (description "@code{validate_email} can be used to verify if an email +address is valid and really exists.") + (license license:lgpl3+))) + +(define-public python2-validate-email + (package-with-python2 python-validate-email)) + +(define-public python-flex + (package + (name "python-flex") + (version "6.10.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "flex" version)) + (sha256 + (base32 + "00pamnwla3khk8nyla7y28dq9jnh69swd7f4jfsl7sn1izs8n8zk")))) + (build-system python-build-system) + (propagated-inputs + `(("python-click" ,python-click) + ("python-iso8601" ,python-iso8601) + ("python-jsonpointer" ,python-jsonpointer) + ("python-pyyaml" ,python-pyyaml) + ("python-requests" ,python-requests) + ("python-rfc3987" ,python-rfc3987) + ("python-six" ,python-six) + ("python-validate-email" ,python-validate-email))) + (home-page "https://github.com/pipermerriam/flex") + (synopsis "Validates Swagger schemata") + (description "@code{flex} can be used to validate Swagger schemata.") + (license license:bsd-3))) + +(define-public python2-flex + (package-with-python2 python-flex)) + +(define-public python-marshmallow + (package + (name "python-marshmallow") + (version "3.0.0b14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "marshmallow" version)) + (sha256 + (base32 + "1digk3f5cfk7wmlka65mc7bzsd96pbsgcsvp6pimd5b4ff9zb5p3")))) + (build-system python-build-system) + (propagated-inputs + `(("python-dateutil" ,python-dateutil) + ("python-simplejson" ,python-simplejson))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytz" ,python-pytz))) + (home-page "https://github.com/marshmallow-code/marshmallow") + (synopsis "Convert complex datatypes to and from native +Python datatypes.") + (description "@code{marshmallow} provides a library for converting +complex datatypes to and from native Python datatypes.") + (license license:expat))) + +(define-public python2-marshmallow + (package-with-python2 python-marshmallow)) + +(define-public python-apispec + (package + (name "python-apispec") + (version "0.25.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "apispec" version)) + (sha256 + (base32 + "0kxa8723zbisx10363yh4mmmn4higxrspymbjfz5zq8f644zagm9")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pyyaml" ,python-pyyaml))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-flask" ,python-flask) + ("python-marshmallow" ,python-marshmallow) + ("python-tornado" ,python-tornado) + ("python-bottle" ,python-bottle) + ("python-mock" ,python-mock))) + (home-page "https://github.com/marshmallow-code/apispec") + (synopsis "Swagger 2.0 API specification generator") + (description "@code{python-apispec} is a pluggable API specification +generator. Currently supports the OpenAPI specification (f.k.a. +Swagger 2.0).") + (license license:expat))) + +(define-public python2-apispec + (package-with-python2 python-apispec)) + +(define-public python-flasgger + (package + (name "python-flasgger") + (version "0.6.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/rochacbruno/flasgger/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1gqzlm0rb55fdpsy5ipkganlx9cnpi454fqyycr03jm22zql14ay")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (substitute* "Makefile" + (("flake8 flasgger --ignore=F403") + "flake8 flasgger --ignore=E731,F403")) + (setenv "PYTHONPATH" (string-append (getcwd) + ":" + (getenv "PYTHONPATH"))) + (zero? (system* "py.test"))))))) + (propagated-inputs + `(("python-flask" ,python-flask) + ("python-pyyaml" ,python-pyyaml) + ("python-jsonschema" ,python-jsonschema) + ("python-mistune" ,python-mistune) + ("python-six" ,python-six))) + (native-inputs + `(("python-decorator" ,python-decorator) + ("python-flake8" ,python-flake8) + ("python-flask-restful" ,python-flask-restful) + ("python-flex" ,python-flex) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-marshmallow" ,python-marshmallow) + ("python-apispec" ,python-apispec))) + (home-page "https://github.com/rochacbruno/flasgger/") + (synopsis "Extract Swagger specs from your Flask project") + (description "@code{python-flasgger} allows extracting Swagger specs +from your Flask project. It is a fork of Flask-Swagger.") + (license license:expat))) + +(define-public python2-flasgger + (package-with-python2 python-flasgger)) + +(define-public python-swagger-spec-validator + (package + (name "python-swagger-spec-validator") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "swagger-spec-validator" version)) + (sha256 + (base32 + "13hkpn2lycwr0468yqhjb3kwszqf7hjwlq61w7vdxq1caz31k4nw")))) + (build-system python-build-system) + (propagated-inputs + `(("python-jsonschema" ,python-jsonschema) + ("python-six" ,python-six))) + (home-page + "https://github.com/Yelp/swagger_spec_validator") + (synopsis "Validation of Swagger specifications") + (description "@code{swagger_spec_validator} provides a library for +validating Swagger API specifications.") + (license license:asl2.0))) + +(define-public python2-swagger-spec-validator + (package-with-python2 python-swagger-spec-validator)) + +(define-public python-apache-libcloud + (package + (name "python-apache-libcloud") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "apache-libcloud" version)) + (sha256 + (base32 + "0daj3mkzw79v5zin2r1s2wkrz1hplfc16bwj4ss68i5qjq4l2p0j")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-ssh + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "libcloud/compute/ssh.py" + (("'ssh'") (string-append "'" (assoc-ref inputs "openssh") + "/bin/ssh" "'"))) + #t)) + (add-after 'unpack 'patch-tests + (lambda _ + (substitute* "./libcloud/test/test_file_fixtures.py" + ;; See <https://issues.apache.org/jira/browse/LIBCLOUD-923>. + (("def _ascii") "def _raw_data(self, method, url, body, headers): + return (httplib.OK, + \"1234abcd\", + {\"test\": \"value\"}, + httplib.responses[httplib.OK]) + def _ascii")) + (substitute* "libcloud/test/compute/test_ssh_client.py" + (("class ShellOutSSHClientTests") + "@unittest.skip(\"Guix container doesn't have ssh service\") +class ShellOutSSHClientTests") + ;; See <https://issues.apache.org/jira/browse/LIBCLOUD-924>. + (("'.xf0.x90.x8d.x88'") "b'\\xF0\\x90\\x8D\\x88'") + (("'.xF0', '.x90', '.x8D', '.x88'") + "b'\\xF0', b'\\x90', b'\\x8D', b'\\x88'")) + #t)) + (add-before 'check 'copy-secret + (lambda _ + (copy-file "libcloud/test/secrets.py-dist" + "libcloud/test/secrets.py") + #t))))) + (inputs + `(("openssh" ,openssh))) + (propagated-inputs + `(("python-paramiko" ,python-paramiko) + ("python-requests" ,python-requests))) + (native-inputs + `(("python-lockfile" ,python-lockfile) + ("python-mock" ,python-mock) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner) + ("python-requests-mock" ,python-requests-mock))) + (home-page "https://libcloud.apache.org/") + (synopsis "Unified Cloud API") + (description "@code{libcloud} is a Python library for interacting with +many of the popular cloud service providers using a unified API.") + (license license:asl2.0))) + +(define-public python2-apache-libcloud + (package-with-python2 python-apache-libcloud)) + +(define-public python-smmap2 + (package + (name "python-smmap2") + (version "2.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "smmap2" version)) + (sha256 + (base32 + "1hvn28p3zvxa98sbi9lrqvv2ps4q284j4jq9a619zw0m7yv0sly7")))) + (build-system python-build-system) + (native-inputs + `(("python-nosexcover" ,python-nosexcover))) + (home-page "https://github.com/Byron/smmap") + (synopsis "Python sliding window memory map manager") + (description "@code{smmap2} is a pure Python implementation of a sliding +window memory map manager.") + (license license:bsd-3))) + +(define-public python2-smmap2 + (package-with-python2 python-smmap2)) + +(define-public python-regex + (package + (name "python-regex") + (version "2017.06.07") + (source (origin + (method url-fetch) + (uri (pypi-uri "regex" version)) + (sha256 + (base32 + "06r6b7yigikbj3a72whl85r2b64pj1r0ypmw9yalmkm0wnxq8mz4")))) + (build-system python-build-system) + (home-page "https://bitbucket.org/mrabarnett/mrab-regex") + (synopsis "Alternative regular expression module") + (description "This regular expression implementation is backwards- +compatible with the standard @code{re} module, but offers additional +functionality like full case-folding for case-insensitive matches in Unicode.") + (license license:psfl))) + +(define-public python2-regex + (package-with-python2 python-regex)) + +(define-public python2-pyopengl + (package + (name "python2-pyopengl") + (version "3.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyOpenGL" version)) + (sha256 + (base32 + "1byxjj6a8rwzhxhjqlc588zdad2qwxdd7vlam2653ylll31waiwv")))) + (arguments + `(#:python ,python-2)) + (build-system python-build-system) + (home-page "http://pyopengl.sourceforge.net") + (synopsis "Standard OpenGL bindings for Python") + (description + "PyOpenGL is the most common cross platform Python binding to OpenGL and +related APIs. The binding is created using the standard @code{ctypes} +library.") + (license license:bsd-3))) + +(define-public python2-pyopengl-accelerate + (package + (inherit python2-pyopengl) + (name "python2-pyopengl-accelerate") + (version "3.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyOpenGL-accelerate" version)) + (sha256 + (base32 + "0464c1ifzk0k92lyndikmvzjgnx1y25r7bkkc8pnxm4kp1q4czwj")))) + (synopsis "Acceleration code for PyOpenGL") + (description + "This is the Cython-coded accelerator module for PyOpenGL."))) + +(define-public python-rencode + (package + (name "python-rencode") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rencode" version)) + (sha256 + (base32 + "0mzwdq1is7kyyr32i5k4iz6g5xxdvmiyc132jnc60p9m6lnwjrpv")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'delete-bogus-test + ;; This test requires /home/aresch/Downloads, which is not provided by + ;; the build environment. + (lambda _ + (delete-file "rencode/t.py") + #t))))) + (native-inputs `(("pkg-config" ,pkg-config) + ("python-cython" ,python-cython))) + (home-page "https://github.com/aresch/rencode") + (synopsis "Serialization of heterogeneous data structures") + (description + "The @code{rencode} module is a data structure serialization library, +similar to @code{bencode} from the BitTorrent project. For complex, +heterogeneous data structures with many small elements, r-encoding stake up +significantly less space than b-encodings. This version of rencode is a +complete rewrite in Cython to attempt to increase the performance over the +pure Python module.") + (license license:bsd-3))) + +(define-public python2-rencode + (package-with-python2 python-rencode)) + +(define-public python-xenon + (package + (name "python-xenon") + (version "0.5.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xenon" version)) + (sha256 + (base32 + "029cbhysg2vr5n4jz8gpg2793f8wkwnqpr1qgv6c1dn685vy31mc")))) + (build-system python-build-system) + (native-inputs + `(("python-pyyaml" ,python-pyyaml) + ("python-radon" ,python-radon) + ("python-requests" ,python-requests) + ("python-flake8" ,python-flake8) + ("python-tox" ,python-tox))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'patch-test-requirements + (lambda _ + ;; Remove httpretty dependency for tests. + (substitute* "setup.py" + (("httpretty") "")) + #t))))) + (home-page "https://xenon.readthedocs.org/") + (synopsis "Monitor code metrics for Python on your CI server") + (description + "Xenon is a monitoring tool based on Radon. It monitors code complexity. +Ideally, @code{xenon} is run every time code is committed. Through command +line options, various thresholds can be set for the complexity of code. It +will fail (i.e. it will exit with a non-zero exit code) when any of these +requirements is not met.") + (license license:expat))) + +(define-public python2-xenon + (package-with-python2 python-xenon)) + +(define-public python-pysocks + (package + (name "python-pysocks") + (version "1.6.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PySocks" version)) + (sha256 + (base32 + "0wn6xafwy9c1gamwljw3fyvih5w19qy9xp39zmv8c90ai5ajrr9z")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) + (home-page "https://github.com/Anorov/PySocks") + (synopsis "SOCKS client module") + (description "@code{pysocks} is an updated and semi-actively maintained +version of @code{SocksiPy} with bug fixes and extra features.") + (license license:bsd-3))) + +(define-public python2-pysocks + (package-with-python2 python-pysocks)) + +(define-public python-pydiff + (package + (name "python-pydiff") + (version "0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydiff" version)) + (sha256 + (base32 + "1als83h9w0gab24ipyna6khm390qmpnpkc5jksmdbs2xc8hp2z44")))) + (build-system python-build-system) + (home-page "https://github.com/myint/pydiff") + (synopsis "Library to diff two Python files at the bytecode level") + (description + "@code{pydiff} makes it easy to look for actual code changes while +ignoring formatting changes.") + (license license:expat))) + +(define-public python2-pydiff + (package-with-python2 python-pydiff)) + +(define-public python-tqdm + (package + (name "python-tqdm") + (version "4.19.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tqdm" version)) + (sha256 + (base32 + "1pw0ngm0zn9papdmkwipi3yih5c3di6d0w849bdmrraq4d2d9h2y")))) + (build-system python-build-system) + (native-inputs + `(("python-flake8" ,python-flake8) + ("python-nose" ,python-nose) + ("python-coverage" ,python-coverage))) + (home-page "https://github.com/tqdm/tqdm") + (synopsis "Fast, extensible progress meter") + (description + "Make loops show a progress bar on the console by just wrapping any +iterable with @code{|tqdm(iterable)|}. Offers many options to define +design and layout.") + (license (list license:mpl2.0 license:expat)))) + +(define-public python2-tqdm + (package-with-python2 python-tqdm)) + +(define-public python-pkginfo + (package + (name "python-pkginfo") + (version "1.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pkginfo" version)) + (sha256 + (base32 + "0x6lm17p1ks031mj6pajyp4rkq74vpqq8qwjb7ikgwmkli1day2q")))) + (build-system python-build-system) + (arguments + ;; The tests are broken upstream. + '(#:tests? #f)) + (home-page + "https://code.launchpad.net/~tseaver/pkginfo/trunk") + (synopsis + "Query metadatdata from sdists, bdists, and installed packages") + (description + "API to query the distutils metadata written in @file{PKG-INFO} inside a +source distriubtion (an sdist) or a binary distribution (e.g., created by +running bdist_egg). It can also query the EGG-INFO directory of an installed +distribution, and the *.egg-info stored in a \"development checkout\" (e.g, +created by running @code{python setup.py develop}).") + (license license:expat))) + +(define-public python2-pkginfo + (package-with-python2 python-pkginfo)) + +(define-public python-twine + (package + (name "python-twine") + (version "1.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "twine" version)) + (sha256 + (base32 + "1ay1b6kdq6k4bfbjsvf6ymj41wrgpvinhxndb09355pwhxwmp96a")))) + (build-system python-build-system) + (propagated-inputs + `(("python-tqdm" ,python-tqdm) + ("python-pkginfo" ,python-pkginfo) + ("python-requests" ,python-requests) + ("python-requests-toolbelt" ,python-requests-toolbelt))) + (home-page "https://github.com/pypa/twine") + (synopsis "Collection of utilities for interacting with PyPI") + (description + "@code{twine} currently supports registering projects and uploading +distributions. It authenticates the user over HTTPS, allows them to pre-sign +their files and supports any packaging format (including wheels).") + (license license:asl2.0))) + +(define-public python2-twine + (package-with-python2 python-twine)) + +(define-public python-linecache2 + (package + (name "python-linecache2") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "linecache2" version)) + (sha256 + (base32 + "0z79g3ds5wk2lvnqw0y2jpakjf32h95bd9zmnvp7dnqhf57gy9jb")))) + (build-system python-build-system) + (arguments + `(;; The tests depend on unittest2, and our version is a bit too old. + #:tests? #f)) + (native-inputs + `(("python-pbr" ,python-pbr-minimal))) + (home-page + "https://github.com/testing-cabal/linecache2") + (synopsis "Backports of the linecache module") + (description + "The linecache module allows one to get any line from any file, while +attempting to optimize internally, using a cache, the common case where many +lines are read from a single file.") + (license license:psfl))) + +(define-public python2-linecache2 + (package-with-python2 python-linecache2)) + +(define-public python-traceback2 + (package + (name "python-traceback2") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "traceback2" version)) + (sha256 + (base32 + "0c1h3jas1jp1fdbn9z2mrgn3jj0hw1x3yhnkxp7jw34q15xcdb05")))) + (build-system python-build-system) + (arguments + `(;; python-traceback2 and python-unittest2 depend on one another. + #:tests? #f)) + (native-inputs + `(("python-pbr" ,python-pbr-minimal))) + (propagated-inputs + `(("python-linecache2" ,python-linecache2))) + (home-page + "https://github.com/testing-cabal/traceback2") + (synopsis "Backports of the traceback module") + (description + "This module provides a standard interface to extract, format and print +stack traces of Python programs. It exactly mimics the behavior of the Python +interpreter when it prints a stack trace.") + (license license:psfl))) + +(define-public python2-traceback2 + (package-with-python2 python-traceback2)) + +(define-public python-ratelimiter + (package + (name "python-ratelimiter") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ratelimiter" version)) + (sha256 + (base32 + "1dhz85mj5bqd2mij84ncs6pz32hgidr79hay4aqfmzaa4rbb497p")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ; There are no tests in the pypi archive. + (home-page "https://github.com/RazerM/ratelimiter") + (synopsis "Simple rate limiting object") + (description + "The @code{ratelimiter} module ensures that an operation will not be +executed more than a given number of times during a given period.") + (license license:asl2.0))) + +(define-public python2-ratelimiter + (package-with-python2 python-ratelimiter)) + +(define-public python-dukpy + (package + (name "python-dukpy") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/kovidgoyal/dukpy/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0pj39rfwlzivqm5hkrsza7gssg6ggpxlq5ivc8f3h7x5pfgc6y6c")))) + (build-system python-build-system) + (home-page "https://github.com/kovidgoyal/dukpy") + (synopsis "Run JavaScript in python") + (description + "dukpy is a JavaScript runtime environment for Python using the duktape +embeddable JavaScript engine.") + ;; Dukpy is licensed under MIT like the embedded duktape library, + ;; with 'errors.c' as GPL3. + (license (list license:expat license:gpl3)))) + +(define-public python2-dukpy + (package-with-python2 python-dukpy)) + +(define-public python-jsonrpclib-pelix + (package + (name "python-jsonrpclib-pelix") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jsonrpclib-pelix" version)) + (sha256 + (base32 + "0f83z5zi7w32vprhk1dyc94ir1bh4hdd57bjdbwkq9ykng8qilhl")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; no tests in PyPI tarball + (home-page "https://github.com/tcalmant/jsonrpclib/") + (synopsis "JSON-RPC 2.0 client library for Python") + (description + "This library implements the JSON-RPC v2.0 +specification (backwards-compatible) as a client library for Python. This +version is a fork of jsonrpclib by Josh Marshall, usable with Pelix remote +services.") + (license license:asl2.0))) + +(define-public python2-jsonrpclib-pelix + (package-with-python2 python-jsonrpclib-pelix)) + +(define-public python-setuptools-scm-git-archive + (package + (name "python-setuptools-scm-git-archive") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "setuptools_scm_git_archive" version)) + (sha256 + (base32 + "1nii1sz5jq75ilf18bjnr11l9rz1lvdmyk66bxl7q90qan85yhjj")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + (home-page "https://github.com/Changaco/setuptools_scm_git_archive/") + (synopsis "Setuptools_scm plugin for git archives") + (description + "The setuptools_scm_git_archive package is a plugin to +setuptools_scm, which supports obtaining versions from git archives that +belong to tagged versions.") + (license license:expat))) + +(define-public python2-setuptools-scm-git-archive + (package-with-python2 python-setuptools-scm-git-archive)) + +(define-public python-pyclipper + (package + (name "python-pyclipper") + (version "1.1.0.post1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyclipper" version ".zip")) + (sha256 + (base32 + "0ldbkbnx94an4zzrwb1sxmg6k0jgk4cwmvcdyy8y5k1zslc612wa")) + (modules '((guix build utils))) + (snippet + '(begin + ;; This file is generated by Cython. + (delete-file "pyclipper/pyclipper.cpp") #t)))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'cythonize-sources + (lambda _ + (with-directory-excursion "pyclipper" + (invoke "cython" "--cplus" "pyclipper.pyx"))))))) + (propagated-inputs + `(("python-setuptools-scm-git-archive" ,python-setuptools-scm-git-archive))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner) + ("python-unittest2" ,python-unittest2) + ("unzip" ,unzip))) + (home-page "https://github.com/greginvm/pyclipper") + (synopsis "Wrapper for Angus Johnson's Clipper library") + (description + "Pyclipper is a Cython wrapper for the C++ translation of the +Angus Johnson's polygon clipping Clipper library (ver. 6.4.2).") + (license license:expat))) + +(define-public python2-pyclipper + (package-with-python2 python-pyclipper)) + +(define-public python2-booleanoperations + (package + (name "python2-booleanoperations") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "booleanOperations" version ".zip")) + (sha256 + (base32 + "1hw42fazdpvsn77glx96hwsj9l17mvx37sc5707s08y5w6fx16mn")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (native-inputs + `(("unzip" ,unzip) + ("python2-pytest" ,python2-pytest) + ("python2-pytest-runner" ,python2-pytest-runner))) + (propagated-inputs + `(("python-fonttools" ,python2-fonttools) + ("python-pyclipper" ,python2-pyclipper) + ("python-ufolib" ,python2-ufolib))) + (home-page "https://github.com/typemytype/booleanOperations") + (synopsis "Boolean operations on paths") + (description + "BooleanOperations provides a Python library that enables +boolean operations on paths.") + (license license:expat))) + +(define-public python-tempdir + (package + (name "python-tempdir") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tempdir" version)) + (sha256 + (base32 + "13msyyxqbicr111a294x7fsqbkl6a31fyrqflx3q7k547gnq15k8")))) + (build-system python-build-system) + (home-page "https://pypi.org/project/tempdir/") + (arguments + ;; the package has no tests + '(#:tests? #f)) + (synopsis "Python library for managing temporary directories") + (description + "This library manages temporary directories that are automatically +deleted with all their contents when they are no longer needed. It is +particularly convenient for use in tests.") + (license license:expat))) + +(define-public python2-tempdir + (package-with-python2 python-tempdir)) + +(define-public python-activepapers + (package + (name "python-activepapers") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ActivePapers.Py" version)) + (sha256 + (base32 + "12wkhjh90ffipjzv10swndp2xv9hd7xrxvg6v0n4n3i411pj4xb8")))) + (build-system python-build-system) + (arguments + `(#:modules ((ice-9 ftw) + (srfi srfi-1) + (guix build utils) + (guix build python-build-system)) + + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-python2-code + (lambda _ + (for-each delete-file + '("lib/activepapers/builtins2.py" + "lib/activepapers/standardlib2.py" + "lib/activepapers/utility2.py")))) + (replace 'check + (lambda _ + ;; Deactivate the test cases that download files + (setenv "NO_NETWORK_ACCESS" "1") + ;; For some strange reason, some tests fail if nosetests runs all + ;; test modules in a single execution. They pass if each test + ;; module is run individually. + (for-each (lambda (filename) + (invoke "nosetests" + (string-append "tests/" filename))) + (scandir "tests" + (lambda (filename) + (string-suffix? ".py" filename))))))))) + (native-inputs + `(("python-tempdir" ,python-tempdir) + ("python-nose" ,python-nose))) + (propagated-inputs + `(("python-h5py" ,python-h5py))) + (home-page "http://www.activepapers.org/") + (synopsis "Executable papers for scientific computing") + (description + "ActivePapers is a tool for working with executable papers, which +combine data, code, and documentation in single-file packages, +suitable for publication as supplementary material or on repositories +such as figshare or Zenodo.") + (properties `((python2-variant . ,(delay python2-activepapers)))) + (license license:bsd-3))) + +(define-public python2-activepapers + (let ((base (package-with-python2 + (strip-python2-variant python-activepapers)))) + (package + (inherit base) + (arguments + (substitute-keyword-arguments (package-arguments base) + ((#:phases phases) + `(modify-phases ,phases + (delete 'delete-python2-code) + (add-after 'unpack 'delete-python3-code + (lambda _ + (for-each delete-file + '("lib/activepapers/builtins3.py" + "lib/activepapers/standardlib3.py" + "lib/activepapers/utility3.py"))))))))))) + +(define-public python-semver + (package + (name "python-semver") + (version "2.7.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "semver" version)) + (sha256 + (base32 + "0hhgqppchv59rqj0yzi1prdg2nfsywqmjsqy2rycyxm0hvxmbyqz")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-test-requirements + (lambda _ + (substitute* "setup.py" + ;; Our Python is new enough. + (("'virtualenv<14\\.0\\.0'") "'virtualenv'")) + #t))))) + (native-inputs + `(("python-tox" ,python-tox) + ("python-virtualenv" ,python-virtualenv))) + (home-page "https://github.com/k-bx/python-semver") + (synopsis "Python helper for Semantic Versioning") + (description "This package provides a Python library for +@url{Semantic Versioning, http://semver.org/}.") + (license license:bsd-3))) + +(define-public python2-semver + (package-with-python2 python-semver)) + +(define-public python-pyro4 + (package + (name "python-pyro4") + (version "4.74") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pyro4" version)) + (sha256 + (base32 + "0pzp7c6q3vvkxq0wy9lr6wd5wky40sajz69g697i5rb2q497pvc9")))) + (build-system python-build-system) + (propagated-inputs + `(("python-serpent" ,python-serpent))) + (home-page "https://pyro4.readthedocs.io") + (synopsis "Distributed object middleware for Python") + (description + "Pyro enables you to build applications in which objects can talk to each +other over the network. You can just use normal Python method calls to call +objects on other machines, also known as remote procedure calls (RPC).") + (license license:expat))) + +(define-public python2-pyro + (package + (name "python2-pyro") + (version "3.16") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pyro" version)) + (file-name (string-append "Pyro-" version ".tar.gz")) + (sha256 + (base32 + "0y75wzdqbjy565rpxaxscav4j8xg060sa90lnmb7aypgaf251v8v")))) + (build-system python-build-system) + (arguments + ;; Pyro is not compatible with Python 3 + `(#:python ,python-2 + ;; Pyro has no test cases for automatic execution + #:tests? #f)) + (home-page "http://pythonhosted.org/Pyro/") + (synopsis "Distributed object manager for Python") + (description "Pyro is a Distributed Object Technology system +written in Python that is designed to be easy to use. It resembles +Java's Remote Method Invocation (RMI). It has less similarity to CORBA, +which is a system and language independent Distributed Object Technology +and has much more to offer than Pyro or RMI. Pyro 3.x is no +longer maintained. New projects should use Pyro4 instead, which +is the new Pyro version that is actively developed.") + (license license:expat))) + +(define-public python2-scientific + (package + (name "python2-scientific") + (version "2.9.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://bitbucket.org/khinsen/" + "scientificpython/downloads/ScientificPython-" + version ".tar.gz")) + (file-name (string-append "ScientificPython-" version ".tar.gz")) + (sha256 + (base32 + "0fc69zhlsn9d2jvbzyjl9ah53vj598h84nkq230c83ahfvgzx5y3")))) + (build-system python-build-system) + (inputs + `(("netcdf" ,netcdf))) + (propagated-inputs + `(("python-numpy" ,python2-numpy-1.8) + ("python-pyro" ,python2-pyro))) + (arguments + ;; ScientificPython is not compatible with Python 3 + `(#:python ,python-2 + #:tests? #f ; No test suite + #:phases + (modify-phases %standard-phases + (replace 'build + (lambda* (#:key inputs #:allow-other-keys) + (zero? (system* "python" "setup.py" "build" + (string-append "--netcdf_prefix=" + (assoc-ref inputs "netcdf"))))))))) + (home-page "https://bitbucket.org/khinsen/scientificpython") + (synopsis "Python modules for scientific computing") + (description "ScientificPython is a collection of Python modules that are +useful for scientific computing. Most modules are rather general (Geometry, +physical units, automatic derivatives, ...) whereas others are more +domain-specific (e.g. netCDF and PDB support). The library is currently +not actively maintained and works only with Python 2 and NumPy < 1.9.") + (license license:cecill-c))) + +(define-public python2-mmtk + (package + (name "python2-mmtk") + (version "2.7.11") + (source + (origin + (method url-fetch) + (uri (string-append "https://bitbucket.org/khinsen/" + "mmtk/downloads/MMTK-" version ".tar.gz")) + (file-name (string-append "MMTK-" version ".tar.gz")) + (sha256 + (base32 + "1d0nnjx4lwsvh8f99vv1r6gi50d93yba0adkz8b4zgv4za4c5862")))) + (build-system python-build-system) + (native-inputs + `(("netcdf" ,netcdf))) + (propagated-inputs + `(("python-scientific" ,python2-scientific) + ("python-tkinter" ,python-2 "tk"))) + (arguments + `(#:python ,python-2 + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-before 'build 'includes-from-scientific + (lambda* (#:key inputs #:allow-other-keys) + (mkdir-p "Include/Scientific") + (copy-recursively + (string-append + (assoc-ref inputs "python-scientific") + "/include/python2.7/Scientific") + "Include/Scientific")))))) + (home-page "http://dirac.cnrs-orleans.fr/MMTK") + (synopsis "Python library for molecular simulation") + (description "MMTK is a library for molecular simulations with an emphasis +on biomolecules. It provides widely used methods such as Molecular Dynamics +and normal mode analysis, but also basic routines for implementing new methods +for simulation and analysis. The library is currently not actively maintained +and works only with Python 2 and NumPy < 1.9.") + (license license:cecill-c))) + +(define-public python-phonenumbers + (package + (name "python-phonenumbers") + (version "8.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "phonenumbers" version)) + (sha256 + (base32 + "03fmrgb4r8x3ykmddjs9i3zhs703in8smikj3a6447blqpimwyh1")))) + (build-system python-build-system) + (home-page + "https://github.com/daviddrysdale/python-phonenumbers") + (synopsis + "Python library for dealing with international phone numbers") + (description + "This package provides a Python port of Google's libphonenumber library.") + (license license:asl2.0))) + +(define-public python2-phonenumbers + (package-with-python2 python-phonenumbers)) + +(define-public python-send2trash + (package + (name "python-send2trash") + (version "1.4.2") + (source + (origin (method url-fetch) + ;; Source tarball on PyPI doesn't include tests. + (uri (string-append "https://github.com/hsoft/send2trash/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0ffyhwjyx61slkdy38iwjc4gmj7fj9gs2q58f075gwvq630pzm9z")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda _ + (mkdir-p "/tmp/foo") + (setenv "HOME" "/tmp/foo") + #t))))) + (home-page "https://github.com/hsoft/send2trash") + (synopsis "Send files to the user's @file{~/Trash} directory") + (description "This package provides a Python library to send files to the +user's @file{~/Trash} directory.") + (license license:bsd-3))) + +(define-public python2-send2trash + (package + (inherit (package-with-python2 python-send2trash)) + (arguments + (substitute-keyword-arguments (package-arguments python-send2trash) + ((#:phases phases) + `(modify-phases ,phases + (add-before 'check 'setenv + (lambda _ + (setenv "PYTHONPATH" + (string-append (getcwd) ":" (getenv "PYTHONPATH"))) + #t)))))) + (properties `((python2-variant . ,(delay python-send2trash)))))) + +(define-public python-yapf + (package + (name "python-yapf") + (version "0.24.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "yapf" version)) + (sha256 + (base32 + "0anwby0ydmyzcsgjc5dn1ryddwvii4dq61vck447q0n96npnzfyf")))) + (build-system python-build-system) + (home-page "https://github.com/google/yapf") + (synopsis "Formatter for Python code") + (description "YAPF is a formatter for Python code. It's based off of +@dfn{clang-format}, developed by Daniel Jasper. In essence, the algorithm +takes the code and reformats it to the best formatting that conforms to the +style guide, even if the original code didn't violate the style guide.") + (license license:asl2.0))) + +(define-public python2-yapf + (package-with-python2 python-yapf)) + +(define-public python-gyp + (let ((commit "5e2b3ddde7cda5eb6bc09a5546a76b00e49d888f") + (revision "0")) + (package + (name "python-gyp") + ;; Google does not release versions, + ;; based on second most recent commit date. + (version (git-version "0.0.0" revision commit)) + (source + (origin + ;; Google does not release tarballs, + ;; git checkout is needed. + (method git-fetch) + (uri (git-reference + (url "https://chromium.googlesource.com/external/gyp") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0fr7nxcrk292djmxzpcjaphnsd123k31gp8jnd91vwknhq6snmv9")))) + (build-system python-build-system) + (home-page "https://gyp.gsrc.io/") + (synopsis "GYP is a Meta-Build system") + (description + "GYP builds build systems for large, cross platform applications. +It can be used to generate XCode projects, Visual Studio projects, Ninja build +files, and Makefiles.") + (license license:bsd-3)))) + +(define-public python2-gyp + (package-with-python2 python-gyp)) + +(define-public python-whatever + (package + (name "python-whatever") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/Suor/whatever/archive/" version + ".tar.gz")) + (sha256 + (base32 + "1iqvnaf0zpc6b4rvbqq4xy45mszcscyzpzknv8wg6j84pbp22sap")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "py.test")))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "http://github.com/Suor/whatever") + (synopsis "Make anonymous functions by partial application of operators") + (description "@code{whatever} provides an easy way to make anonymous +functions by partial application of operators.") + (license license:bsd-3))) + +(define-public python2-whatever + (package-with-python2 python-whatever)) + +(define-public python-funcy + (package + (name "python-funcy") + (version "1.10") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/Suor/funcy/archive/" version + ".tar.gz")) + (sha256 + (base32 + "1fanxivsip29vgarw6dn39xym3q4pbxcpa11plpp548lvxajpahz")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "py.test")))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-whatever" ,python-whatever))) + (home-page "http://github.com/Suor/funcy") + (synopsis "Functional tools") + (description "@code{funcy} is a library that provides functional tools. +Examples are: +@enumerate +@item merge - Merges collections of the same type +@item walk - Type-preserving map +@item select - Selects a part of a collection +@item take - Takes the first n items of a collection +@item first - Takes the first item of a collection +@item remove - Predicated-removes items of a collection +@item concat - Concatenates two collections +@item flatten - Flattens a collection with subcollections +@item distinct - Returns only distinct items +@item split - Predicated-splits a collection +@item split_at - Splits a collection at a given item +@item group_by - Groups items by group +@item pairwise - Pairs off adjacent items +@item partial - Partially-applies a function +@item curry - Curries a function +@item compose - Composes functions +@item complement - Complements a predicate +@item all_fn - \"all\" with predicate +@end enumerate") + (license license:bsd-3))) + +(define-public python2-funcy + (package-with-python2 python-funcy)) + +(define-public python-isoweek + (package + (name "python-isoweek") + (version "1.3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "isoweek" version)) + (sha256 + (base32 + "1s7zsf0pab0l9gn6456qadnz5i5h90hafcjwnhx5mq23qjxggwvk")))) + (build-system python-build-system) + (home-page "https://github.com/gisle/isoweek") + (synopsis "Objects representing a week") + (description "The @code{isoweek} module provide the class Week that +implements the week definition of ISO 8601. This standard also defines +a notation for identifying weeks; yyyyWww (where the W is a literal). +Week instances stringify to this form.") + (license license:bsd-3))) + +(define-public python2-isoweek + (package-with-python2 python-isoweek)) + +(define-public python-tokenize-rt + (package + (name "python-tokenize-rt") + (version "2.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tokenize-rt" version)) + (sha256 + (base32 + "1yjvbz7rvrz31zjyax1cgy3xhf4wb3j18jwnj4bnl77ca4gliyiw")))) + (build-system python-build-system) + (home-page "https://github.com/asottile/tokenize-rt") + (synopsis "Wrapper around the stdlib tokenize which roundtrips.") + (description + "This Python library is a wrapper around @code{tokenize} from the Python +standard library. It provides two additional tokens @code{ESCAPED_NL} and +@code{UNIMPORTANT_WS}, and a @code{Token} data type. Use @code{src_to_tokens} +and @code{tokens_to_src} to roundtrip.") + (license license:expat))) + +(define-public python-future-fstrings + (package + (name "python-future-fstrings") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "future_fstrings" version)) + (sha256 + (base32 + "0ydxqz2dvns44g55p8ix2x18qkfk3aaz0m0dc70f3g6n8js35h47")))) + (build-system python-build-system) + (propagated-inputs + `(("python-tokenize-rt" ,python-tokenize-rt))) + (home-page "https://github.com/asottile/future-fstrings") + (synopsis "Backport of fstrings to Python < 3.6") + (description + "This package provides a UTF-8 compatible encoding +@code{future_fstrings}, which performs source manipulation. It decodes the +source bytes using the UTF-8 encoding and then rewrites Python 3.6 style +@code{f} strings.") + (license license:expat))) + +(define-public python-typing + (package + (name "python-typing") + (version "3.6.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "typing" version)) + (sha256 + (base32 + "0ba9acs4awx15bf9v3nrs781msbd2nx826906nj6fqks2bvca9s0")))) + (build-system python-build-system) + (home-page "https://docs.python.org/3/library/typing.html") + (synopsis "Type hints for Python") + (description "This is a backport of the standard library @code{typing} +module to Python versions older than 3.5. Typing defines a standard notation +for Python function and variable type annotations. The notation can be used +for documenting code in a concise, standard format, and it has been designed +to also be used by static and runtime type checkers, static analyzers, IDEs +and other tools.") + (license license:psfl))) + +(define-public python2-typing + (package-with-python2 python-typing)) + +(define-public bpython + (package + (name "bpython") + (version "0.17.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bpython" version)) + (sha256 + (base32 + "0bxhxi5zxdkrf8b4gwn0d363kdz3qnypjwhm1aydki53ph8ca1w9")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test + (lambda _ + ;; Remove failing test. FIXME: make it pass + (delete-file "bpython/test/test_args.py") + #t)) + (add-after 'wrap 'add-aliases + ;; for symmetry to bpython2, add symlinks bypthon3, bpdb3, etc. + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (for-each + (lambda (old new) + (symlink old (string-append out "/bin/" new))) + '("bpython" "bpython-curses" "bpython-urwid" "bpdb") + '("bpython3" "bpython3-curses" "bpython3-urwid" "bpdb3"))) + #t))))) + (propagated-inputs + `(("python-pygments" ,python-pygments) + ("python-requests" ,python-requests) + ("python-babel" ,python-babel) ; optional, for internationalization + ("python-curtsies" ,python-curtsies) ; >= 0.1.18 + ("python-greenlet" ,python-greenlet) + ("python-urwid" ,python-urwid) ; for bpython-urwid only + ("python-six" ,python-six))) + (native-inputs + `(("python-sphinx" ,python-sphinx) + ("python-mock" ,python-mock))) + (home-page "https://bpython-interpreter.org/") + (synopsis "Fancy interface to the Python interpreter") + (description "Bpython is a fancy interface to the Python +interpreter. bpython's main features are + +@enumerate +@item in-line syntax highlighting, +@item readline-like autocomplete with suggestions displayed as you type, +@item expected parameter list for any Python function, +@item \"rewind\" function to pop the last line of code from memory and + re-evaluate, +@item send the code you've entered off to a pastebin, +@item save the code you've entered to a file, and +@item auto-indentation. +@end enumerate") + (license license:expat))) + +(define-public bpython2 + (let ((base (package-with-python2 + (strip-python2-variant bpython)))) + (package (inherit base) + (name "bpython2") + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test + (lambda _ + ;; Remove failing test. FIXME: make it pass + (delete-file "bpython/test/test_args.py") + ;; Disable failing test-cases (renaming inhibits they are + ;; discovered) + (substitute* "bpython/test/test_curtsies_repl.py" + (("^(\\s*def )(test_get_last_word_with_prev_line\\W)" _ a b) + (string-append a "xxx_off_" b)) + (("^(\\s*def )(test_complex\\W)" _ a b) + (string-append a "xxx_off_" b))) + #t)) + (add-before 'build 'rename-scripts + ;; rename the scripts to bypthon2, bpdb2, etc. + (lambda _ + (substitute* "setup.py" + (("^(\\s+'bpdb)(\\s+=.*',?)\\s*?$" _ name rest) + (string-append name "2" rest "\n")) + (("^(\\s+'bpython)(-\\S+)?(\\s+=.*',?)\\s*?$" _ name sub rest) + (string-append name "2" (or sub "") rest "\n"))) + #t)))))))) + +(define-public python-pyinotify + (package + (name "python-pyinotify") + (version "0.9.6") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyinotify" version)) + (sha256 + (base32 + "1x3i9wmzw33fpkis203alygfnrkcmq9w1aydcm887jh6frfqm6cw")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ;no tests + (home-page "https://github.com/seb-m/pyinotify") + (synopsis "Python library for monitoring inotify events") + (description + "@code{pyinotify} provides a Python interface for monitoring +file system events on Linux.") + (license license:expat))) + +(define-public python2-pyinotify + (package-with-python2 python-pyinotify)) + +;; Ada parser uses this version. +(define-public python2-quex-0.67.3 + (package + (name "python2-quex") + (version "0.67.3") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/quex/HISTORY/" + (version-major+minor version) + "/quex-" version ".zip")) + (sha256 + (base32 + "14gv8ll3ipqv4kyc2xiy891nrmjl4ic823zfyx8hassagyclyppw")))) + (build-system python-build-system) + (native-inputs + `(("unzip" ,unzip))) + (arguments + `(#:python ,python-2 + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure) + (delete 'build) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (share/quex (string-append out "/share/quex")) + (bin (string-append out "/bin"))) + (copy-recursively "." share/quex) + (mkdir-p bin) + (symlink (string-append share/quex "/quex-exe.py") + (string-append bin "/quex")) + #t)))))) + (native-search-paths + (list (search-path-specification + (variable "QUEX_PATH") + (files '("share/quex"))))) + (home-page "http://quex.sourceforge.net/") + (synopsis "Lexical analyzer generator in Python") + (description "@code{quex} is a lexical analyzer generator in Python.") + (license license:lgpl2.1+))) ; Non-military + +(define-public python2-quex + (package (inherit python2-quex-0.67.3) + (name "python2-quex") + (version "0.68.1") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/quex/DOWNLOAD/quex-" version ".tar.gz")) + (sha256 + (base32 + "0svc9nla3b9145d6b7fb9dizx412l3difzqw0ilh9lz52nsixw8j")) + (file-name (string-append name "-" version ".tar.gz")))))) + +(define-public python-more-itertools + (package + (name "python-more-itertools") + (version "4.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "more-itertools" version)) + (sha256 + (base32 + "17h3na0rdh8xq30w4b9pizgkdxmm51896bxw600x84jflg9vaxn4")))) + (build-system python-build-system) + (arguments + `(,@(if (any (cute string-prefix? <> (or (%current-system) + (%current-target-system))) + '("armhf" "i686")) + '(#:phases + (modify-phases %standard-phases + ;; This is required for 32-bit hardware. + ;; TODO: Try to remove this when upgrading. + (add-after 'unpack 'patch-test + (lambda _ + (substitute* "more_itertools/tests/test_more.py" + (("10 \\*\\* 10") "9 ** 9")) + #t)))) + '()))) + (propagated-inputs + `(("python-six" ,python-six-bootstrap))) + (home-page "https://github.com/erikrose/more-itertools") + (synopsis "More routines for operating on iterables, beyond itertools") + (description "Python's built-in @code{itertools} module implements a +number of iterator building blocks inspired by constructs from APL, Haskell, +and SML. @code{more-itertools} includes additional building blocks for +working with iterables.") + (license license:expat))) + +(define-public python2-more-itertools + (package-with-python2 python-more-itertools)) + +(define-public python-latexcodec + (package + (name "python-latexcodec") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "latexcodec" version)) + (sha256 + (base32 + "0zdd1gf24i83ykadx0y30n3001j43scqr2saql3vckk5c39dj1wn")))) + (build-system python-build-system) + (inputs + `(("python-six" ,python-six))) + (home-page "https://readthedocs.org/projects/latexcodec/") + (synopsis "Work with LaTeX code in Python") + (description "Lexer and codec to work with LaTeX code in Python.") + (license license:expat))) + +(define-public python-pybtex + (package + (name "python-pybtex") + (version "0.21") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pybtex" version)) + (sha256 + (base32 + "00300j8dn5pxq4ndxmfmbmycg2znawkqs49val2x6jlmfiy6r2mg")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (inputs + `(("python-latexcodec" ,python-latexcodec) + ("python-pyyaml" ,python-pyyaml) + ("python-six" ,python-six))) + (arguments + `(#:test-target "nosetests")) + (home-page "https://pybtex.org/") + (synopsis "BibTeX-compatible bibliography processor") + (description "Pybtex is a BibTeX-compatible bibliography processor written +in Python. You can simply type pybtex instead of bibtex.") + (license license:expat))) + +(define-public python-onetimepass + (package + (name "python-onetimepass") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "onetimepass" version)) + (sha256 + (base32 "09vagxgbq78wvq4xbikmn2hpqqsa2i96kqsmphf7dqynfv0dlsd5")))) + (build-system python-build-system) + (propagated-inputs `(("python-six" ,python-six))) + (home-page "https://github.com/tadeck/onetimepass/") + (synopsis "One-time password library") + (description "Python one-time password library for HMAC-based (HOTP) and +time-based (TOTP) passwords.") + (license license:expat))) + +(define-public python-parso + (package + (name "python-parso") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "parso" version)) + (sha256 + (base32 + "18p89iwcm8mnf380f92g9w0bhx5km8wxp392vvjcq4y1ld1llw1m")))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (build-system python-build-system) + (home-page "https://github.com/davidhalter/parso") + (synopsis "Python Parser") + (description "Parso is a Python parser that supports error recovery and +round-trip parsing for different Python versions (in multiple Python versions). +Parso is also able to list multiple syntax errors in your Python file.") + (license license:expat))) + +(define-public python2-parso + (package-with-python2 python-parso)) + +(define-public python-async-generator + (package + (name "python-async-generator") + (version "1.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "async_generator" version)) + (sha256 + (base32 + "0wc3hidz1q85cja93k5pzybn0fprfnqyrv4qlkdqdzklc5f4dmdp")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/python-trio/async_generator") + (synopsis "Async generators and context managers for Python 3.5+") + (description "@code{async_generator} back-ports Python 3.6's native async +generators and Python 3.7's context managers into Python 3.5.") + ;; Dual licensed. + (license (list license:expat license:asl2.0)))) + +(define-public python-async-timeout + (package + (name "python-async-timeout") + (version "3.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "async-timeout" version)) + (sha256 + (base32 + "0pscbyr840m7fyfc3r8zv9kgkwdcn9f78p7zsrczciwd09m82g0c")))) + (build-system python-build-system) + (home-page "https://github.com/aio-libs/async_timeout/") + (synopsis "Timeout context manager for asyncio programs") + (description "@code{async-timeout} provides a timeout timeout context +manager compatible with @code{asyncio}.") + (license license:asl2.0))) + +(define-public python-glob2 + (package + (name "python-glob2") + (version "0.6") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/miracle2k/python-glob2/archive/" + version + ".tar.gz")) + (sha256 + (base32 + "0ja168f0dz4kbz4m06dm0rd3acaypk6hjx2km541pw22y9s40mag")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system python-build-system) + (home-page "https://github.com/miracle2k/python-glob2/") + (synopsis "Extended Version of the python buildin glob module") + (description "This is an extended version of the Python +@url{http://docs.python.org/library/glob.html, built-in glob module} which +adds: + +@itemize +@item The ability to capture the text matched by glob patterns, and return +those matches alongside the file names. +@item A recursive @code{**} globbing syntax, akin for example to the +@code{globstar} option of Bash. +@item The ability to replace the file system functions used, in order to glob +on virtual file systems. +@item Compatible with Python 2 and Python 3 (tested with 3.3). +@end itemize + +Glob2 currently based on the glob code from Python 3.3.1.") + (license license:bsd-2))) + +(define-public python2-glob2 + (package-with-python2 python-glob2)) + +(define-public python-gipc + (package + (name "python-gipc") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "gipc" version ".zip")) + (sha256 + (base32 + "0pd9by719qh882hqs6xpby61sn1x5h98hms5p2p8yqnycrf1s0h2")))) + (build-system python-build-system) + (native-inputs + `(("unzip" ,unzip))) + (propagated-inputs + `(("python-gevent" ,python-gevent))) + (home-page "http://gehrcke.de/gipc") + (synopsis "Child process management in the context of gevent") + (description "Usage of Python's multiprocessing package in a +gevent-powered application may raise problems. With @code{gipc}, +process-based child processes can safely be created anywhere within a +gevent-powered application.") + (license license:expat))) + +(define-public python2-gipc + (package-with-python2 python-gipc)) + +(define-public python-fusepy + (package + (name "python-fusepy") + (version "2.0.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fusepy" version)) + (sha256 + (base32 + "0v5grm4zyf58hsplwsxfbihddw95lz9w8cy3rpzbyha287swgx8h")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'set-library-file-name + (lambda* (#:key inputs #:allow-other-keys) + (let ((fuse (assoc-ref inputs "fuse"))) + (substitute* "fuse.py" + (("find_library\\('fuse'\\)") + (string-append "'" fuse "/lib/libfuse.so'"))) + #t)))))) + (propagated-inputs + `(("fuse" ,fuse))) + (home-page "https://github.com/fusepy/fusepy") + (synopsis "Simple ctypes bindings for FUSE") + (description "Python module that provides a simple interface to FUSE and +MacFUSE. The binding is created using the standard @code{ctypes} library.") + (license license:isc))) + +(define-public python2-fusepy + (package-with-python2 python-fusepy)) + +(define-public python2-gdrivefs + (package + (name "python2-gdrivefs") + (version "0.14.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "gdrivefs" version)) + (sha256 + (base32 + "0v9sp2cfg4ki3wagkwf3rnfpjhvgf845anz3757il9z95yvvcvb7")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-before 'build 'patch-setup-py + (lambda _ + ;; Update requirements from dependency==version + ;; to dependency>=version + (substitute* "gdrivefs/resources/requirements.txt" + (("==") ">=")) + #t))))) + (native-inputs + `(("python2-gipc" ,python2-gipc) + ("python2-gevent" ,python2-gevent) + ("python2-greenlet" ,python2-greenlet) + ("python2-httplib2" ,python2-httplib2) + ("python2-uritemplate" ,python2-uritemplate) + ("python2-oauth2client" ,python2-oauth2client) + ("python2-six" ,python2-six))) + (propagated-inputs + `(("python2-dateutil" ,python2-dateutil) + ("python2-fusepy" ,python2-fusepy) + ("python2-google-api-client" ,python2-google-api-client))) + (home-page "https://github.com/dsoprea/GDriveFS") + (synopsis "Mount Google Drive as a local file system") + (description "@code{gdrivefs} provides a FUSE wrapper for Google Drive +under Python 2.7.") + (license license:gpl2))) + +(define-public pybind11 + (package + (name "pybind11") + (version "2.2.4") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pybind/pybind11.git") + (commit (string-append "v" version)))) + (sha256 + (base32 + "0pa79ymcasv8br5ifbx7878id5py2jpjac3i20cqxr6gs9l6ivlv")) + (file-name (git-file-name name version)))) + (build-system cmake-build-system) + (native-inputs + `(("python" ,python) + ("python-pytest" ,python-pytest))) + (arguments + `(#:test-target "check")) + (home-page "https://github.com/pybind/pybind11/") + (synopsis "Seamless operability between C++11 and Python") + (description "pybind11 is a lightweight header-only library that exposes +C++ types in Python and vice versa, mainly to create Python bindings of +existing C++ code. Its goals and syntax are similar to the excellent +Boost.Python library by David Abrahams: to minimize boilerplate code in +traditional extension modules by inferring type information using compile-time +introspection.") + (license license:expat))) + +(define-public python-fasteners + (package + (name "python-fasteners") + (version "0.14.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fasteners" version)) + (sha256 + (base32 + "063y20kx01ihbz2mziapmjxi2cd0dq48jzg587xdsdp07xvpcz22")))) + (build-system python-build-system) + (propagated-inputs + `(("python-monotonic" ,python-monotonic) + ("python-six" ,python-six) + ("python-testtools" ,python-testtools))) + (home-page "https://github.com/harlowja/fasteners") + (synopsis "Python package that provides useful locks") + (description + "This package provides a Python program that provides following locks: + +@itemize +@item Locking decorator +@item Reader-writer locks +@item Inter-process locks +@item Generic helpers +@end itemize\n") + (properties `((python2-variant . ,(delay python2-fasteners)))) + (license license:asl2.0))) + +(define-public python2-fasteners + (let ((base (package-with-python2 (strip-python2-variant python-fasteners)))) + (package + (inherit base) + (propagated-inputs + `(("python2-futures" ,python2-futures) + ,@(package-propagated-inputs base)))))) + +(define-public python-requests-file + (package + (name "python-requests-file") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "requests-file" version)) + (sha256 + (base32 + "1yp2jaxg3v86pia0q512dg3hz6s9y5vzdivsgrba1kds05ial14g")))) + (build-system python-build-system) + (propagated-inputs + `(("python-requests" ,python-requests) + ("python-six" ,python-six))) + (home-page + "https://github.com/dashea/requests-file") + (synopsis "File transport adapter for Requests") + (description + "Requests-File is a transport adapter for use with the Requests Python +library to allow local filesystem access via file:// URLs.") + (license license:asl2.0))) + +(define-public python2-requests-file + (package-with-python2 python-requests-file)) + +(define-public python-tldextract + (package + (name "python-tldextract") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tldextract" version)) + (sha256 + (base32 + "1d5s8v6kpsgazyahflhji1cfdcf89rv7l7z55v774bhzvcjp2y99")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-responses" ,python-responses))) + (propagated-inputs + `(("python-idna" ,python-idna) + ("python-requests" ,python-requests) + ("python-requests-file" ,python-requests-file))) + (home-page + "https://github.com/john-kurkowski/tldextract") + (synopsis + "Separate the TLD from the registered domain and subdomains of a URL") + (description + "TLDExtract accurately separates the TLD from the registered domain and +subdomains of a URL, using the Public Suffix List. By default, this includes +the public ICANN TLDs and their exceptions. It can optionally support the +Public Suffix List's private domains as well.") + (license license:bsd-3))) + +(define-public python2-tldextract + (package-with-python2 python-tldextract)) + +(define-public python-pynamecheap + (package + (name "python-pynamecheap") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyNamecheap" version)) + (sha256 + (base32 + "0wkbwz208j8nfrsmzmclvxg22ymknn0mlz76wbdza9k2bx2zja6l")))) + (build-system python-build-system) + (propagated-inputs + `(("python-requests" ,python-requests))) + (home-page + "https://github.com/Bemmu/PyNamecheap") + (synopsis + "Namecheap API client in Python") + (description + "PyNamecheap is a Namecheap API client in Python.") + (license license:expat))) + +(define-public python2-pynamecheap + (package-with-python2 python-pynamecheap)) + +(define-public python-dns-lexicon + (package + (name "python-dns-lexicon") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dns-lexicon" version)) + (sha256 + (base32 + "0jdn3ns71bsybr7njgsqr9xlxsqh7zh6phn4ld0liazqdn2l5f6m")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;requires internet access + (propagated-inputs + `(("python-future" ,python-future) + ("python-pynamecheap" ,python-pynamecheap) + ("python-requests" ,python-requests) + ("python-tldextract" ,python-tldextract) + ("python-urllib3" ,python-urllib3))) + (home-page "https://github.com/AnalogJ/lexicon") + (synopsis + "Manipulate DNS records on various DNS providers") + (description + "Lexicon provides a way to manipulate DNS records on multiple DNS +providers in a standardized way. It has a CLI but it can also be used as a +Python library. It was designed to be used in automation, specifically with +Let's Encrypt.") + (license license:expat))) + +(define-public python2-dns-lexicon + (package-with-python2 python-dns-lexicon)) + +(define-public python-commandlines + (package + (name "python-commandlines") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "commandlines" version)) + (sha256 + (base32 + "0r7xcr0knv02p4mswa2bng61nn8nbhhrs6kvdnb9bb3hhjvm1dl6")))) + (build-system python-build-system) + (home-page "https://github.com/chrissimpkins/commandlines") + (synopsis "Command line argument to object parsing library") + (description + "@code{Commandlines} is a Python library for command line application +development that supports command line argument parsing, command string +validation testing and application logic.") + (license license:expat))) + +;; Make sure to upgrade python-llvmlite in (gnu packages llvm) together with +;; python-numba. They have a very unflexible relationship. +(define-public python-numba + (package + (name "python-numba") + (version "0.39.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "numba" version)) + (sha256 + (base32 + "1bibvkwga1v8293i9ivl469d8bzgabn3vgr2ig7c1i68v8frsx07")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-proprietary-features + (lambda _ + (setenv "NUMBA_DISABLE_HSA" "1") + (setenv "NUMBA_DISABLE_CUDA" "1") + #t)) + (add-after 'unpack 'remove-failing-tests + (lambda _ + ;; FIXME: these tests fail for unknown reasons: + ;; test_non_writable_pycache, test_non_creatable_pycache, and + ;; test_frozen (all in numba.tests.test_dispatcher.TestCache). + (substitute* "numba/tests/test_dispatcher.py" + (("def test(_non_writable_pycache)" _ m) + (string-append "def guix_skip" m)) + (("def test(_non_creatable_pycache)" _ m) + (string-append "def guix_skip" m)) + (("def test(_frozen)" _ m) + (string-append "def guix_skip" m))) + + ;; These tests fail because we don't run the tests from the build + ;; directory: test_setup_py_distutils, test_setup_py_setuptools + ;; They ar in numba.tests.test_pycc.TestDistutilsSupport. + (substitute* "numba/tests/test_pycc.py" + (("def test(_setup_py_distutils|_setup_py_setuptools)" _ m) + (string-append "def guix_skip" m))) + #t)) + (replace 'check + (lambda _ + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH"))) + ;; Something is wrong with the PYTHONPATH when running the + ;; tests from the build directory, as it complains about not being + ;; able to import certain modules. + (with-directory-excursion "/tmp" + (invoke "python3" "-m" "numba.runtests" "-v" "-m"))) + #t))))) + (propagated-inputs + `(("python-llvmlite" ,python-llvmlite) + ("python-numpy" ,python-numpy) + ("python-singledispatch" ,python-singledispatch))) + ;; Needed for tests. + (inputs + `(("python-jinja2" ,python-jinja2) + ("python-pygments" ,python-pygments))) + (home-page "https://numba.pydata.org") + (synopsis "Compile Python code using LLVM") + (description "Numba gives you the power to speed up your applications with +high performance functions written directly in Python. With a few +annotations, array-oriented and math-heavy Python code can be just-in-time +compiled to native machine instructions, similar in performance to C, C++ and +Fortran, without having to switch languages or Python interpreters. + +Numba works by generating optimized machine code using the LLVM compiler +infrastructure at import time, runtime, or statically (using the included pycc +tool).") + (license license:bsd-3))) + +(define-public python-anndata + (package + (name "python-anndata") + (version "0.6.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "anndata" version)) + (sha256 + (base32 + "1fh461xyyc7pcrjfgd013bdc2alf53r46ss3gfw3431mbb1gappi")))) + (build-system python-build-system) + (propagated-inputs + `(("python-h5py" ,python-h5py) + ("python-natsort" ,python-natsort) + ("python-pandas" ,python-pandas) + ("python-scipy" ,python-scipy))) + (home-page "https://github.com/theislab/anndata") + (synopsis "Annotated data for data analysis pipelines") + (description "Anndata is a package for simple (functional) high-level APIs +for data analysis pipelines. In this context, it provides an efficient, +scalable way of keeping track of data together with learned annotations and +reduces the code overhead typically encountered when using a mostly +object-oriented library such as @code{scikit-learn}.") + (license license:bsd-3))) + +(define-public python-dill + (package + (name "python-dill") + (version "0.2.8.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dill" version)) + (sha256 + (base32 + "1cymzn9fxwdy33h21zkk4gqgzvd25110hh3zdqnvnwa3p52c4kb2")))) + (build-system python-build-system) + ;; FIXME: The check phase fails with "don't know how to make test". + (arguments '(#:tests? #f)) + (home-page "https://pypi.org/project/dill") + (synopsis "Serialize all of Python") + (description "Dill extends Python's @code{pickle} module for serializing +and de-serializing Python objects to the majority of the built-in Python +types. Dill provides the user the same interface as the @code{pickle} module, +and also includes some additional features. In addition to pickling Python +objects, @code{dill} provides the ability to save the state of an interpreter +session in a single command. Hence, it would be feasable to save a +interpreter session, close the interpreter, ship the pickled file to another +computer, open a new interpreter, unpickle the session and thus continue from +the saved state of the original interpreter session.") + (license license:bsd-3))) + +(define-public python-multiprocess + (package + (name "python-multiprocess") + (version "0.70.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "multiprocess" version)) + (sha256 + (base32 + "1ip5caz67b3q0553mr8gm8xwsb8x500jn8ml0gihgyfy52m2ypcq")))) + (build-system python-build-system) + (propagated-inputs + `(("python-dill" ,python-dill))) + (home-page "https://pypi.org/project/multiprocess") + (synopsis "Multiprocessing and multithreading in Python") + (description + "This package is a fork of the multiprocessing Python package, a package +which supports the spawning of processes using the API of the standard +library's @code{threading} module.") + (license license:bsd-3))) + +(define-public python-toolz + (package + (name "python-toolz") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "toolz" version)) + (sha256 + (base32 + "1j9i7fdjnx9dz35fdj5gvgxx6585ja9sxgaiv65if77nlxz0m7wj")))) + (build-system python-build-system) + ;; FIXME: tests cannot be computed: "Can't perform this operation for + ;; unregistered loader type" + (arguments '(#:tests? #f)) + (home-page "https://github.com/pytoolz/toolz/") + (synopsis "List processing tools and functional utilities") + (description + "This package provides a set of utility functions for iterators, +functions, and dictionaries.") + (license license:bsd-3))) + +(define-public python2-toolz + (package-with-python2 python-toolz)) + +(define-public python-cytoolz + (package + (name "python-cytoolz") + (version "0.9.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cytoolz" version)) + (sha256 + (base32 + "1r80p88hm3f3r4zpixzr047y5hw4bzy41m4xywnhycda83x0dk44")))) + (build-system python-build-system) + ;; FIXME: tests fail with "module 'cytoolz.curried' has no attribute + ;; 'exceptions'" + (arguments '(#:tests? #f)) + (propagated-inputs + `(("python-toolz" ,python-toolz))) + (native-inputs + `(("python-cython" ,python-cython))) + (home-page "https://github.com/pytoolz/cytoolz") + (synopsis "High performance functional utilities") + (description + "The cytoolz package implements the same API as provided by toolz. The +main differences are that @code{cytoolz} is faster and cytoolz offers a C API +that is accessible to other projects developed in Cython.") + (license license:bsd-3))) + +(define-public python-sortedcontainers + (package + (name "python-sortedcontainers") + (version "2.0.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sortedcontainers" version)) + (sha256 + (base32 + "10hrk2k0hbf9x78vd3f0lj277m1yzfhzzxr0hja718liwb398wk0")))) + (build-system python-build-system) + (native-inputs + `(("python-tox" ,python-tox))) + (home-page "http://www.grantjenks.com/docs/sortedcontainers/") + (synopsis "Sorted List, Sorted Dict, Sorted Set") + (description + "This package provides a sorted collections library, written in +pure-Python.") + (license license:asl2.0))) + +(define-public python-cloudpickle + (package + (name "python-cloudpickle") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cloudpickle" version)) + (sha256 + (base32 + "1wdw89mlm7fqa3fm3ymskx05jrys66n8m1z1a8s0mss0799ahsgi")))) + (build-system python-build-system) + ;; FIXME: there are 5 errors in 122 tests: + ;; ERROR: test_function_pickle_compat_0_4_0 (tests.cloudpickle_test.CloudPickleTest) + ;; ERROR: test_function_pickle_compat_0_4_1 (tests.cloudpickle_test.CloudPickleTest) + ;; ERROR: test_function_pickle_compat_0_4_0 (tests.cloudpickle_test.Protocol2CloudPickleTest) + ;; ERROR: test_function_pickle_compat_0_4_1 (tests.cloudpickle_test.Protocol2CloudPickleTest) + ;; ERROR: test_temp_file (tests.cloudpickle_file_test.CloudPickleFileTests) + ;; TypeError: cannot serialize '_io.BufferedRandom' object + (arguments '(#:tests? #f)) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-mock" ,python-mock) + ("python-tornado" ,python-tornado))) + (home-page "https://github.com/cloudpipe/cloudpickle") + (synopsis "Extended pickling support for Python objects") + (description + "Cloudpickle makes it possible to serialize Python constructs not +supported by the default pickle module from the Python standard library. It +is especially useful for cluster computing where Python expressions are +shipped over the network to execute on remote hosts, possibly close to the +data.") + (license license:bsd-3))) + +(define-public python2-cloudpickle + (package-with-python2 python-cloudpickle)) + +(define-public python-locket + (package + (name "python-locket") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "locket" version)) + (sha256 + (base32 + "1d4z2zngrpqkrfhnd4yhysh66kjn4mblys2l06sh5dix2p0n7vhz")))) + (build-system python-build-system) + (home-page "https://github.com/mwilliamson/locket.py") + (synopsis "File-based locks for Python") + (description + "Locket implements a lock that can be used by multiple processes provided +they use the same path.") + (license license:bsd-2))) + +(define-public python2-locket + (package-with-python2 python-locket)) + +(define-public python-blosc + (package + (name "python-blosc") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "blosc" version)) + (sha256 + (base32 + "1cm91c6r431yla2mbs4895bgiianjf30dfz14vvv99dslygd65jw")))) + (build-system python-build-system) + ;; FIXME: all tests pass, but then this error is printed: + ;; TypeError: calling <function run at 0x7ffff2568d90> returned None, not a test + (arguments '(#:tests? #f)) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (home-page "https://github.com/blosc/python-blosc") + (synopsis "Python wrapper for the Blosc data compressor library") + (description "Blosc is a high performance compressor optimized for binary +data. It has been designed to transmit data to the processor cache faster +than the traditional, non-compressed, direct memory fetch approach via a +@code{memcpy()} system call. + +Blosc works well for compressing numerical arrays that contains data with +relatively low entropy, like sparse data, time series, grids with +regular-spaced values, etc. + +This Python package wraps the Blosc library.") + (license license:bsd-3))) + +(define-public python2-blosc + (package-with-python2 python-blosc)) + +(define-public python-partd + (package + (name "python-partd") + (version "0.3.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "partd" version)) + (sha256 + (base32 + "0sz6rwlnl4fqq220pyz863cnv0gjdxl4m7lscl71ishl5z0xkmhz")))) + (build-system python-build-system) + (propagated-inputs + `(("python-blosc" ,python-blosc) + ("python-locket" ,python-locket) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-pyzmq" ,python-pyzmq) + ("python-toolz" ,python-toolz))) + (home-page "https://github.com/dask/partd/") + (synopsis "Appendable key-value storage") + (description "Partd stores key-value pairs. Values are raw bytes. We +append on old values. Partd excels at shuffling operations.") + (license license:bsd-3))) + +(define-public python2-partd + (package-with-python2 python-partd)) + +(define-public python-dask + (package + (name "python-dask") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "dask" version)) + (sha256 + (base32 + "1xwz8h020ipwav2p5gcq9pskya1cvzd6hjyvd06dvr3w5lxlmym1")))) + (build-system python-build-system) + ;; A single test out of 5000+ fails. This test is marked as xfail when + ;; pytest-xdist is used. + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-broken-test + (lambda _ + (substitute* "dask/tests/test_threaded.py" + (("def test_interrupt\\(\\)" m) + (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" + m))) + (when (which "python2") + ;; This test fails with recent Pandas: + ;; <https://github.com/dask/dask/issues/3794>. + (substitute* "dask/dataframe/tests/test_dataframe.py" + (("def test_info\\(\\)" m) + (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" + m)))) + #t)) + (replace 'check + (lambda _ (invoke "pytest" "-vv")))))) + (propagated-inputs + `(("python-cloudpickle" ,python-cloudpickle) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-partd" ,python-partd) + ("python-toolz" ,python-toolz) + ("python-pyyaml" ,python-pyyaml))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/dask/dask/") + (synopsis "Parallel computing with task scheduling") + (description + "Dask is a flexible parallel computing library for analytics. It +consists of two components: dynamic task scheduling optimized for computation, +and large data collections like parallel arrays, dataframes, and lists that +extend common interfaces like NumPy, Pandas, or Python iterators to +larger-than-memory or distributed environments. These parallel collections +run on top of the dynamic task schedulers. ") + (license license:bsd-3))) + +(define-public python2-dask + (package-with-python2 python-dask)) + +(define-public python-ilinkedlist + (package + (name "python-ilinkedlist") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ilinkedlist" version)) + (sha256 + (base32 + "0nrw4sr3afldrp7073hvc0rgdz282s0l819jdmj1i6nn05v33h0l")))) + (build-system python-build-system) + (native-inputs `(("python-pytest" ,python-pytest))) + (inputs `(("python" ,python))) + (home-page "https://github.com/luther9/ilinkedlist-py") + (synopsis "Immutable linked list library") + (description + "This is a implementation of immutable linked lists for Python. It +contains @code{nil} (the empty linked list) and a @code{Pair} class for nodes. +Since a linked list is treated as immutable, it is hashable, and its length +can be retrieved in constant time. Some of the terminology is inspired by +LISP. It is possible to create an improper list by creating a @code{Pair} +with a non-list @code{cdr}.") + (license license:gpl3+))) + +(define-public python-readlike + (package + (name "python-readlike") + (version "0.1.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "readlike" version)) + (sha256 + (base32 "027w8fvi50ksl57q0a7kb5zvmq8jxaawnviib1jdqw0p3igvm1j4")))) + (build-system python-build-system) + (home-page "https://github.com/jangler/readlike") + (synopsis "GNU Readline-like line editing module") + (description + "This Python module provides line editing functions similar to the default +Emacs-style ones of GNU Readline. Unlike the Python standard library's +@code{readline} package, this one allows access to those capabilties in settings +outside of a standard command-line interface. It is especially well-suited to +interfacing with Urwid, due to a shared syntax for describing key inputs. + +Currently, all stateless Readline commands are implemented. Yanking and history +are not supported.") + (license license:expat))) + +(define-public python2-readlike + (package-with-python2 python-readlike)) + +(define-public python-reparser + (package + (name "python-reparser") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ReParser" version)) + (sha256 + (base32 "0nniqb69xr0fv7ydlmrr877wyyjb61nlayka7xr08vlxl9caz776")))) + (build-system python-build-system) + (home-page "https://github.com/xmikos/reparser") + (synopsis "Simple lexer/parser for inline markup based on regular expressions") + (description + "This Python library provides a simple lexer/parser for inline markup based +on regular expressions.") + (license license:expat))) + +(define-public python2-reparser + (let ((reparser (package-with-python2 + (strip-python2-variant python-reparser)))) + (package (inherit reparser) + (propagated-inputs + `(("python2-enum34" ,python2-enum34) + ,@(package-propagated-inputs reparser)))))) + +(define-public python-precis-i18n + (package + (name "python-precis-i18n") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "precis_i18n" version)) + (sha256 + (base32 + "0gjhvwd8aifx94rl1ag08vlmndyx2q3fkyqb0c4i46x3p2bc2yi2")))) + (build-system python-build-system) + (home-page "https://github.com/byllyfish/precis_i18n") + (synopsis "Implementation of the PRECIS framework") + (description + "This module implements the PRECIS Framework as described in RFC 8264, +RFC 8265 and RFC 8266.") + (license license:expat))) + +(define-public python-absl-py + (package + (name "python-absl-py") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "absl-py" version)) + (sha256 + (base32 + "1mp9lk0b2qa37b7y6ak4lvf6ifw2ylyy6bkf9ik77md3j4xrwlc7")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/abseil/abseil-py") + (synopsis "Abseil Python common libraries") + (description + "This package provides the Abseil Python Common Libraries, a collection +of Python libraries for building Python applications.") + (license license:asl2.0))) + +(define-public python-astor + (package + (name "python-astor") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astor" version)) + (sha256 + (base32 + "13gv6f2xz9i564byp21gcpc0l3w4cs23k1wbcam8kky2ls3hvhwm")))) + (build-system python-build-system) + ;; FIXME: There are two errors and two test failures. + (arguments `(#:tests? #f)) + (home-page "https://github.com/berkerpeksag/astor") + (synopsis "Read/rewrite/write Python ASTs") + (description "Astor is designed to allow easy manipulation of Python +source via the AST.") + (license license:bsd-3))) + +(define-public python-grpcio + (package + (name "python-grpcio") + (version "1.17.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "grpcio" version)) + (sha256 + (base32 + "0qb9y6j83nxa6d4kc60i8yfgdm7a8ms7b54kncjzf5y7nsxp8rzx")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://grpc.io") + (synopsis "HTTP/2-based RPC framework") + (description "This package provides a Python library for communicating +with the HTTP/2-based RPC framework gRPC.") + (license license:asl2.0))) + +(define-public python-astunparse + (package + (name "python-astunparse") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astunparse" version)) + (sha256 + (base32 + "1jhidwyrqn17avqh9xnnm3wd7q7aahaq009cba67g86y6gxicyyj")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; there are none + (propagated-inputs + `(("python-six" ,python-six) + ("python-wheel" ,python-wheel))) + (home-page "https://github.com/simonpercivall/astunparse") + (synopsis "AST unparser for Python") + (description "This package provides an AST unparser for Python. It is a +factored out version of @code{unparse} found in the Python source +distribution.") + (license license:bsd-3))) + +(define-public python-gast + (package + (name "python-gast") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "gast" version)) + (sha256 + (base32 + "0c296xm1vz9x4w4inmdl0k8mnc0i9arw94si2i7pglpc461r0s3h")))) + (build-system python-build-system) + (propagated-inputs + `(("python-astunparse" ,python-astunparse))) + (home-page "https://pypi.org/project/gast/") + (synopsis "Generic Python AST that abstracts the underlying Python version") + (description + "GAST provides a compatibility layer between the AST of various Python +versions, as produced by @code{ast.parse} from the standard @code{ast} +module.") + (license license:bsd-3))) + +(define-public python-wikidata + (package + (name "python-wikidata") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Wikidata" version)) + (sha256 + (base32 + "08nlnydddfp1jj0cdmshvld1irzngbp3dij928wqsg9ziklm6mw9")))) + (build-system python-build-system) + (propagated-inputs + `(("python-babel" ,python-babel))) + (home-page "https://github.com/dahlia/wikidata") + (synopsis "Wikidata client library") + (description + "This package provides a Python interface to +@url{https://www.wikidata.org/, Wikidata}.") + (properties '((upstream-name . "Wikidata"))) + (license license:gpl3+))) + +(define-public python-doctest-ignore-unicode + (package + (name "python-doctest-ignore-unicode") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "doctest-ignore-unicode" version)) + (sha256 + (base32 + "1m9aa4qnyj21lbq4sbvmv1vcz7zksss4rz37ddf2hxv4hk8b547w")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://github.com/gnublade/doctest-ignore-unicode") + (synopsis "Ignore Unicode literal prefixes in doctests") + (description + "This package adds support for a flag to ignore Unicode literal prefixes +in doctests.") + (license license:asl2.0))) + +(define-public python-attr + (package + (name "python-attr") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "attr" version)) + (sha256 + (base32 + "0pbpskvxp5hzdvcaf766ljwpckshir8sf7z6jqji6zyib20594ch")))) + (build-system python-build-system) + (home-page "https://github.com/denis-ryzhkov/attr") + (synopsis "Decorator for attributes of target function or class") + (description "Simple decorator to set attributes of target function or +class in a @acronym{DRY, Don't Repeat Yourself} way.") + (license license:expat))) |