diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 704 |
1 files changed, 550 insertions, 154 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 8137d665fd..d2786e4826 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -38,7 +38,7 @@ ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> ;;; Copyright © 2017, 2018 Adriano Peluso <catonano@gmail.com> ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au> -;;; Copyright © 2017, 2018 Mathieu Othacehe <m.othacehe@gmail.com> +;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018 Kei Kebreau <kkebreau@posteo.net> @@ -66,6 +66,7 @@ ;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com> ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> +;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -165,14 +166,13 @@ (define-public python-psutil (package (name "python-psutil") - (version "5.6.2") + (version "5.6.5") (source (origin (method url-fetch) (uri (pypi-uri "psutil" version)) (sha256 - (base32 - "1v95vb5385qscfdvphv8l2w22bmir3d7yhpi02n58v3mlqy1r3l2")))) + (base32 "0isil5jxwwd8awz54qk28rpgjg43i5l6yl70g40vxwa4r4m56lfh")))) (build-system python-build-system) (arguments ;; FIXME: some tests does not return and times out. @@ -548,14 +548,13 @@ concepts.") (define-public python-cftime (package (name "python-cftime") - (version "1.0.3.4") + (version "1.0.4.2") (source (origin (method url-fetch) (uri (pypi-uri "cftime" version)) (sha256 - (base32 - "0362dhxbzk593walyjz30dll6y2y79wialik647cbwdsf3ad0x6x")))) + (base32 "0w0gi6jnch38hiygl62j4xkcirv4y3dcwrvxl9p7bsk6j27lzihs")))) (build-system python-build-system) (propagated-inputs `(("python-numpy" ,python-numpy))) @@ -909,10 +908,18 @@ some helpful Python 2 compatibility convenience methods.") (base32 "09z4d1jiasn7k1hs5af2ckmnrd0i1d1m04bhfjhv7z6svzfdwgg3")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; Do not run pylint plugin test, as astroid is an old + ;; unsupported version. + (invoke "pytest" "-v" "-k" "not test_pylint_plugin" + "verboselogs/tests.py")))))) (native-inputs `(("python-mock" ,python-mock) - ("python-astroid" ,python-astroid) - ("python-pylint" ,python-pylint))) + ("python-pytest" ,python-pytest))) (home-page "https://verboselogs.readthedocs.io") (synopsis "Verbose logging level for Python's logging module") (description @@ -926,14 +933,14 @@ add the log levels NOTICE, SPAM, SUCCESS and VERBOSE.") (define-public python-coloredlogs (package (name "python-coloredlogs") - (version "7.3") + (version "10.0") (source (origin (method url-fetch) (uri (pypi-uri "coloredlogs" version)) (sha256 (base32 - "1blcann6dyg5dhps9pg12rn0q0rjrlajpmmil0gy0j4cbvnl2il9")))) + "0dkw6xp0r1dwgz4s2f58npx5nxfq51wf4l6qkm5ib27slgfs4sdq")))) (build-system python-build-system) (arguments `(;Tests require some updated modules @@ -1150,13 +1157,13 @@ human-friendly syntax.") (define-public python-pandas (package (name "python-pandas") - (version "0.24.2") + (version "0.25.2") (source (origin (method url-fetch) (uri (pypi-uri "pandas" version)) (sha256 - (base32 "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag")))) + (base32 "1gp2pvzdiakvgjmykdzdlzrsfbg4vjm49jjdl9s0ha0a3yfs34fa")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -1219,10 +1226,22 @@ structures designed to make working with structured (tabular, multidimensional, potentially heterogeneous) and time series data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python.") + (properties `((python2-variant . ,(delay python2-pandas)))) (license license:bsd-3))) +;; Pandas 0.24.x are the last versions that support Python 2. (define-public python2-pandas - (package-with-python2 python-pandas)) + (let ((pandas (package-with-python2 + (strip-python2-variant python-pandas)))) + (package/inherit + pandas + (version "0.24.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "pandas" version)) + (sha256 + (base32 + "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag"))))))) (define-public python2-mechanize (package @@ -1571,6 +1590,27 @@ existing ones.") ;; Tests don't work with python2. #:tests? #f))))) +(define-public python-poyo + (package + (name "python-poyo") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "poyo" version)) + (sha256 + (base32 + "1pflivs6j22frz0v3dqxnvc8yb8fb52g11lqr88z0i8cg2m5csg2")))) + (build-system python-build-system) + (home-page "https://github.com/hackebrot/poyo") + (synopsis "Lightweight YAML Parser for Python") + (description + "This package provides a lightweight YAML Parser for Python. It supports +only a chosen subset of the YAML format that is required to parse cookiecutter +user configuration files. It does not have support for serializing into YAML +and is not compatible with JSON.") + (license license:expat))) + (define-public scons (package (name "scons") @@ -1894,13 +1934,13 @@ files.") (define-public python-pyld (package (name "python-pyld") - (version "1.0.3") + (version "1.0.5") (source (origin (method url-fetch) (uri (pypi-uri "PyLD" version)) (sha256 (base32 - "12i2g6xdj30k7xxcibg3sc5y76snwq8l6n8fy9lyi577kgy0h2pm")))) + "1ywbdbsrkg533qh8xn9ifjh2mvam6v5msrjyqq73jfpvcp89qvff")))) (build-system python-build-system) (home-page "https://github.com/digitalbazaar/pyld") (synopsis "Python implementation of the JSON-LD specification") @@ -2173,13 +2213,13 @@ cutting and pasting that code over and over.") (define-public python-unidecode (package (name "python-unidecode") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (pypi-uri "Unidecode" version)) (sha256 (base32 - "00pi0czzwvbf7djhkkjyvimj60wqdx0llbddzfnax650g9b8yscc")))) + "1s6cp2lv4m0f00hjckjz8p6m7d3n3v16jvg353llf5ia1iqsnsib")))) (build-system python-build-system) (home-page "https://pypi.python.org/pypi/Unidecode") (synopsis "ASCII transliterations of Unicode text") @@ -2495,6 +2535,30 @@ written in pure Python.") (define-public python2-jinja2 (package-with-python2 python-jinja2)) +(define-public python-jinja2-time + (package + (name "python-jinja2-time") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jinja2-time" version)) + (sha256 + (base32 + "0h0dr7cfpjnjj8bgl2vk9063a53649pn37wnlkd8hxjy656slkni")))) + (build-system python-build-system) + (propagated-inputs + `(("python-arrow" ,python-arrow) + ("python-jinja2" ,python-jinja2))) + (home-page + "https://github.com/hackebrot/jinja2-time") + (synopsis "Jinja2 Extension for Dates and Times") + (description + "This package provides an extension for the template engine Jinja2. It +adds a 'now' tag providing a convenient access to the arrow.now() API from +templates. A format string can be provided to control the output.") + (license license:expat))) + (define-public python-pystache (package (name "python-pystache") @@ -2714,7 +2778,7 @@ to deprecate classes, functions or methods.") (define-public python-pygithub (package (name "python-pygithub") - (version "1.43.7") + (version "1.43.8") (source ;; We fetch from the Git repo because there are no tests in the PyPI ;; archive. @@ -2725,8 +2789,7 @@ to deprecate classes, functions or methods.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "0ww92zz0ja9w6rw83vphmn8rwmcn6abg16j4q7zxjc0rrg2cfj9i")))) + (base32 "1625v558xga5mwhl9jqmibywy5qafmg1vqrirqz6zfq1la1d22mw")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -2947,14 +3010,13 @@ receive files via the SCP1 protocol, as implemented by the OpenSSH (define-public python-rst.linker (package (name "python-rst.linker") - (version "1.10") + (version "1.11") (source (origin (method url-fetch) (uri (pypi-uri "rst.linker" version)) (sha256 - (base32 - "0iqaacp7pj1s8avs4kc0qg0r7dscywaq37y6l9j14glqdikk0wdj")))) + (base32 "0pqsfqqx8h0pq21k8l3k62kznrgaj2ala93c64s4d9rpbr4mgkd2")))) (build-system python-build-system) (propagated-inputs `(("python-dateutil" ,python-dateutil) @@ -3075,44 +3137,39 @@ Language (TOML) configuration files.") Server (PLS).") (license license:expat))) -;; XXX: We must use a non-release version since the latest release version -;; requires python-jedi version < 0.15. (define-public python-language-server - (let ((commit "c3cab77a85b1de4af1aec1bafea6a7320d6baec5") - (revision "1")) - (package - (name "python-language-server") - (version (git-version "0.28.3" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/palantir/python-language-server.git") - (commit commit))) - (sha256 - (base32 - "1q0xdwgln09sh58j0ryygj92hfgdhwcs57zjvqihya23jr5v0bz4")))) - (build-system python-build-system) - (propagated-inputs - `(("python-pluggy" ,python-pluggy) - ("python-jsonrpc-server" ,python-jsonrpc-server) - ("python-jedi" ,python-jedi) - ("python-yapf" ,python-yapf) - ("python-pyflakes" ,python-pyflakes) - ("python-pydocstyle" ,python-pydocstyle) - ("python-pycodestyle" ,python-pycodestyle) - ("python-mccabe" ,python-mccabe) - ("python-rope" ,python-rope) - ("python-autopep8" ,python-autopep8) - ("python-pylint" ,python-pylint))) - (home-page "https://github.com/palantir/python-language-server") - (synopsis "Python implementation of the Language Server Protocol") - (description - "The Python Language Server (pyls) is an implementation of the Python 3 + (package + (name "python-language-server") + (version "0.29.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-language-server" version)) + (sha256 + (base32 + "1f8qlflh6j3s7qfmzhirpl8fgidl6f0qbakdmiml96wdxzvka0s3")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pluggy" ,python-pluggy) + ("python-jsonrpc-server" ,python-jsonrpc-server) + ("python-jedi" ,python-jedi) + ("python-yapf" ,python-yapf) + ("python-pyflakes" ,python-pyflakes) + ("python-pydocstyle" ,python-pydocstyle) + ("python-pycodestyle" ,python-pycodestyle) + ("python-mccabe" ,python-mccabe) + ("python-rope" ,python-rope) + ("python-autopep8" ,python-autopep8) + ("python-flake8" ,python-flake8) + ("python-pylint" ,python-pylint))) + (home-page "https://github.com/palantir/python-language-server") + (synopsis "Python implementation of the Language Server Protocol") + (description + "The Python Language Server (pyls) is an implementation of the Python 3 language specification for the Language Server Protocol (LSP). This tool is used in text editing environments to provide a complete and integrated feature-set for programming Python effectively.") - (license license:expat)))) + (license license:expat))) (define-public python-black (package @@ -3405,7 +3462,7 @@ between language specification and implementation aspects.") (define-public python-numpy (package (name "python-numpy") - (version "1.15.4") + (version "1.17.3") (source (origin (method url-fetch) @@ -3414,7 +3471,7 @@ between language specification and implementation aspects.") version "/numpy-" version ".tar.gz")) (sha256 (base32 - "102vcl2qq4pjbm7a3d67vkkvn4466ngia1d8wi5avqwqh8j0jvkn")))) + "1ak9dmjja0q90a7fsxli51ypcwssh8c4pb6f8wkrsnf2xgdk6dy9")))) (build-system python-build-system) (inputs `(("openblas" ,openblas) @@ -3479,10 +3536,24 @@ with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities.") + (properties `((python2-variant . ,(delay python2-numpy)))) (license license:bsd-3))) +;; Numpy 1.16.x are the last versions that support Python 2. (define-public python2-numpy - (package-with-python2 python-numpy)) + (let ((numpy (package-with-python2 + (strip-python2-variant python-numpy)))) + (package/inherit + numpy + (version "1.16.5") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/numpy/numpy/releases/download/v" + version "/numpy-" version ".tar.gz")) + (sha256 + (base32 + "0lg1cycxzi4rvvrd5zxinpdz0ni792fpx6xjd75z1923zcac8qrb"))))))) ;; NOTE: NumPy 1.8 is packaged only for Python 2 because it is of ;; interest only for legacy code going back to NumPy's predecessor @@ -3892,7 +3963,7 @@ To address this and enable easy cycling over arbitrary @code{kwargs}, the (define-public python-colorspacious (package (name "python-colorspacious") - (version "1.1.0") + (version "1.1.2") (source (origin (method git-fetch) @@ -3901,7 +3972,7 @@ To address this and enable easy cycling over arbitrary @code{kwargs}, the (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0g0lxqiscy5g5rq9421vv7abg0c90jzy0zmas2z3hya6k2dr5aid")))) + (base32 "0x7nkphr6g5ql5fvgss8l56rgiyjgh6fm8zzs73i94ci9wzlm63w")))) (build-system python-build-system) (propagated-inputs `(("python-numpy" ,python-numpy))) @@ -4238,14 +4309,13 @@ operators such as union, intersection, and difference.") (define-public python-scipy (package (name "python-scipy") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (pypi-uri "scipy" version)) (sha256 - (base32 - "1df113c9i6vazsn6y3n9wc22jh737z1g7dmx3mypkdwpdnscyhr6")))) + (base32 "192d8dsybvhv19igkrsafbdafx198nz7pibkjgrqjhlr66s3jfd0")))) (build-system python-build-system) (propagated-inputs `(("python-numpy" ,python-numpy) @@ -4383,6 +4453,35 @@ as the original project seems to have been abandoned circa 2007.") (define-public python2-socksipy-branch (package-with-python2 python-socksipy-branch)) +(define-public python-socksipychain + (package + (name "python-socksipychain") + (version "2.0.15") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pagekite/PySocksipyChain.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1pkljnh9hfwla8sg7mil4f9zrnsqj0dbhr3crxjw3k8dnjz70dvk")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; Tests try to access the network. + (home-page "http://pagekite.net/wiki/Floss/PySocksipyChain/") + (synopsis "Python SOCKS module with chained proxies support") + (description + "SocksiPyChain is a modified version of the SocksiPy SOCKS module, which +adds support for arbitrary chaining of proxy servers and various modes of +TLS/SSL encryption. It was developed for use in PageKite, and also includes +a simple netcat replacement with chaining support.") + (license license:bsd-3))) + +(define-public python2-socksipychain + (package-with-python2 python-socksipychain)) + (define-public python-pycodestyle (package (name "python-pycodestyle") @@ -5071,6 +5170,18 @@ child application and control it as if a human were typing commands.") them as the version argument or in a SCM managed file.") (license license:expat))) +;; Needed by python-lazy-object-proxy, remove on next update cycle. +(define-public python-setuptools-scm-3.3 + (package + (inherit python-setuptools-scm) + (version "3.3.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "setuptools_scm" version)) + (sha256 + (base32 + "19cyndx23xmpbhz4qrwmfwsmnnaczd0dw7qg977ksq2dbvxy29dx")))))) + (define-public python2-setuptools-scm (package-with-python2 python-setuptools-scm)) @@ -5160,13 +5271,13 @@ releases.") (define-public python-pathpy (package (name "python-pathpy") - (version "11.5.0") + (version "11.5.1") (source (origin (method url-fetch) (uri (pypi-uri "path.py" version)) (sha256 - (base32 "1jxkf91syzxlpiwgm83fjfz1m5xh3jrvv4iyl5wjsnkk599pls5n")))) + (base32 "0ir9j1haq2jbi7aip6k2fa9l7q1l03k4hp1awxhjhcwzsnwp3ll8")))) (outputs '("out" "doc")) (build-system python-build-system) (propagated-inputs @@ -5380,13 +5491,13 @@ installing @code{kernelspec}s for use with Jupyter frontends.") (define-public python-ipykernel (package (name "python-ipykernel") - (version "5.1.1") + (version "5.1.3") (source (origin (method url-fetch) (uri (pypi-uri "ipykernel" version)) (sha256 - (base32 "173nm29g85w8cac3fg40b27qaq26g41wgg6qn79ql1hq4w2n5sgh")))) + (base32 "1a08y677lpn80qzvv7z0smgggmr5m5ayf0bs6vds47xpxl9sss5k")))) (build-system python-build-system) (arguments `(#:phases @@ -5411,8 +5522,9 @@ installing @code{kernelspec}s for use with Jupyter frontends.") ;; imported at runtime during connect ("python-jupyter-client" ,python-jupyter-client))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-nose" ,python-nose))) + `(("python-flaky" ,python-flaky) + ("python-nose" ,python-nose) + ("python-pytest" ,python-pytest))) (home-page "https://ipython.org") (synopsis "IPython Kernel for Jupyter") (description @@ -5566,13 +5678,13 @@ computing.") (define-public python-ipython (package (name "python-ipython") - (version "7.5.0") + (version "7.9.0") (source (origin (method url-fetch) (uri (pypi-uri "ipython" version ".tar.gz")) (sha256 - (base32 "09mbxq37mfn88xjnib7qfzaq9krr7gf1jxwy1p6mcjr254082h78")))) + (base32 "103jkw18z7fnwdal1mdbijjxi1fndzn31g887lmj7ddpf2r07lyz")))) (build-system python-build-system) (propagated-inputs `(("python-backcall" ,python-backcall) @@ -5832,27 +5944,15 @@ parsing (browser/HTTP) user agent strings.") (define-public python-dbus (package (name "python-dbus") - (version "1.2.8") + (version "1.2.10") (source (origin (method url-fetch) (uri (string-append "https://dbus.freedesktop.org/releases/dbus-python/" "dbus-python-" version ".tar.gz")) (sha256 - (base32 - "0vvvjmiwnc9cjlks3gcdk43ap7llhlpz7cm1wbw0nc2yfsxjpwdb")))) + (base32 "11nqk01iq5bx2llgb3ksknyinijdp29w4ndj210glm009ayjncyl")))) (build-system gnu-build-system) - (arguments - '(#:phases - (modify-phases %standard-phases - (add-before - 'check 'pre-check - (lambda _ - ;; XXX: For the missing '/etc/machine-id'. - (substitute* "test/run-test.sh" - (("DBUS_FATAL_WARNINGS=1") - "DBUS_FATAL_WARNINGS=0")) - #t))))) (native-inputs `(("pkg-config" ,pkg-config))) (inputs @@ -5905,15 +6005,20 @@ the GObject Introspection bindings to libnotify for non-GTK applications.") (define-public python-lxml (package (name "python-lxml") - (version "4.2.5") + (version "4.4.1") (source (origin (method url-fetch) (uri (pypi-uri "lxml" version)) (sha256 (base32 - "0zw0y9hs0nflxhl9cs6ipwwh53szi3w2x06wl0k9cylyqac0cwin")))) + "14jnpfcpgqr9sx8ppd286jzcbk0b36hbqsvd8jkvffipzw5v8768")))) (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "make" "test")))))) (inputs `(("libxml2" ,libxml2) ("libxslt" ,libxslt))) @@ -5976,14 +6081,14 @@ converts incoming documents to Unicode and outgoing documents to UTF-8.") (define-public python-soupsieve (package (name "python-soupsieve") - (version "1.9.2") + (version "1.9.5") (source (origin (method url-fetch) (uri (pypi-uri "soupsieve" version)) (sha256 (base32 - "0in9rc9q3h8w5b4qf7kvl3qxcvw6vrz35ckblchgf70hm6pg3dbj")))) + "1nhd0q0ifwva9wn645s6pn74p1rd97asn3qfg75nphx1wkgcbhg2")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;;XXX: 2 tests fail currently despite claming they were to be @@ -6086,13 +6191,13 @@ Python.") (define-public snakemake (package (name "snakemake") - (version "5.2.4") + (version "5.7.1") (source (origin (method url-fetch) (uri (pypi-uri "snakemake" version)) (sha256 - (base32 "0gj0xxgiq3mp9qyyrbfzldiaq1giliqw0in64nqiz7vx49myqj7z")))) + (base32 "1pnpvvn8n2a78cg360wz3ldmpqrsm2wzi0c0dmvki9fnsw6fxdas")))) (build-system python-build-system) (arguments ;; TODO: Package missing test dependencies. @@ -6110,18 +6215,19 @@ Python.") "/bin/snakemake"))) #t))))) (propagated-inputs - `(("python-gitpython" ,python-gitpython) - ("python-wrapt" ,python-wrapt) - ("python-requests" ,python-requests) - ("python-appdirs" ,python-appdirs) + `(("python-appdirs" ,python-appdirs) ("python-configargparse" ,python-configargparse) ("python-datrie" ,python-datrie) ("python-docutils" ,python-docutils) + ("python-gitpython" ,python-gitpython) ("python-jinja2" ,python-jinja2) ("python-jsonschema" ,python-jsonschema) ("python-networkx" ,python-networkx) + ("python-psutil" ,python-psutil) ("python-pyyaml" ,python-pyyaml) - ("python-ratelimiter" ,python-ratelimiter))) + ("python-ratelimiter" ,python-ratelimiter) + ("python-requests" ,python-requests) + ("python-wrapt" ,python-wrapt))) (home-page "https://snakemake.readthedocs.io") (synopsis "Python-based execution environment for make-like workflows") (description @@ -6130,24 +6236,6 @@ providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.") (license license:expat))) -;; This is currently needed for the pigx-* packages. -(define-public snakemake-4 - (package (inherit snakemake) - (version "4.4.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "snakemake" version)) - (sha256 - (base32 "0g0paia4z7w3srnqdmavq3hrb2x7qnpf81jx50njl0p7y4y0j8jv")))) - (propagated-inputs - `(("python-wrapt" ,python-wrapt) - ("python-requests" ,python-requests) - ("python-appdirs" ,python-appdirs) - ("python-configargparse" ,python-configargparse) - ("python-pyyaml" ,python-pyyaml) - ("python-ratelimiter" ,python-ratelimiter))))) - (define-public python-pyqrcode (package (name "python-pyqrcode") @@ -7201,21 +7289,23 @@ Supported netlink families and protocols include: (define-public python-xlrd (package (name "python-xlrd") - (version "1.0.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "xlrd" version)) (sha256 (base32 - "0s8hjiz01vbhy85xalrz0qlsmd9ypf36zjqrf97hh984spapvy0g")))) + "1ci93fda4n67qhdvfl16zasyxrpygzk53hs6m8z0rd4dxrnb6vjl")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - ;; Current test in setup.py does not work as of 1.0.0, so use nose to - ;; run tests instead for now. - (replace 'check (lambda _ (invoke "nosetests")))))) - (native-inputs `(("python-nose" ,python-nose))) + ;; Some tests depend on writing a temporary file to the user's home + ;; directory. + (add-after 'unpack 'fix-tests + (lambda _ + (delete-file "tests/test_open_workbook.py") + #t))))) (home-page "http://www.python-excel.org/") (synopsis "Library for extracting data from Excel files") (description "This package provides a library to extract data from @@ -8930,14 +9020,14 @@ servers.") (define-public python-jmespath (package (name "python-jmespath") - (version "0.9.3") + (version "0.9.4") (source (origin (method url-fetch) (uri (pypi-uri "jmespath" version)) (sha256 (base32 - "0r7wc7fsxmlwzxx9j1j7rms06c6xs6d4sysirdhz1jk2mb4x90ba")))) + "0k0765x1mybcrzajh3hiqkl8sy9hs0bmn4900frxy0j3ykvaxqmx")))) (build-system python-build-system) (native-inputs `(("python-nose" ,python-nose))) @@ -9081,6 +9171,63 @@ server with very acceptable performance.") (define-public python2-waitress (package-with-python2 python-waitress)) +(define-public python-whichcraft + (package + (name "python-whichcraft") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "whichcraft" version)) + (sha256 + (base32 + "11yfkzyplizdgndy34vyd5qlmr1n5mxis3a3svxmx8fnccdvknxc")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/pydanny/whichcraft") + (synopsis "Cross-platform cross-python shutil.which functionality") + (description + "This package provides a shim of the shutil.which function that's +designed to work across multiple versions of Python.") + (license license:bsd-3))) + +(define-public python-cookiecutter + (package + (name "python-cookiecutter") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cookiecutter" version)) + (sha256 + (base32 + "0glsvaz8igi2wy1hsnhm9fkn6560vdvdixzvkq6dn20z3hpaa5hk")))) + (build-system python-build-system) + (native-inputs + `(("python-freezegun" ,python-freezegun) + ("python-pytest" ,python-pytest) + ("python-pytest-catchlog" ,python-pytest-catchlog) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock))) + (propagated-inputs + `(("python-binaryornot" ,python-binaryornot) + ("python-click" ,python-click) + ("python-future" ,python-future) + ("python-jinja2" ,python-jinja2) + ("python-jinja2-time" ,python-jinja2-time) + ("python-poyo" ,python-poyo) + ("python-requests" ,python-requests) + ("python-whichcraft" ,python-whichcraft))) + (home-page "https://github.com/audreyr/cookiecutter") + (synopsis + "Command-line utility that creates projects from project templates") + (description + "This package provides a command-line utility that creates projects from +project templates, e.g. creating a Python package project from a Python package +project template.") + (license license:bsd-3))) + (define-public python-pyquery (package (name "python-pyquery") @@ -9459,6 +9606,7 @@ useful for solving the Assignment Problem.") (base32 "10qsqdjpbc85fykc1vgcs8xwbgn4l2l52c8d83xf1q59pwyn79bw")))) (build-system python-build-system) + (arguments '(#:tests? #f)) ; Test invocation is no longer supported by Python. (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://bitbucket.org/mchaput/whoosh") @@ -9962,14 +10110,13 @@ to occurrences in strings and comments.") (define-public python-py3status (package (name "python-py3status") - (version "3.16") + (version "3.21") (source (origin (method url-fetch) (uri (pypi-uri "py3status" version)) (sha256 - (base32 - "1xrfph277bgjln3jbpzpgkhxad04fjvj7s3xfil42q1sxi4s3q3g")))) + (base32 "16z8zq83hxy48g6hh4xczbdz50qvxv9k1aahr4fqq7jis60cc262")))) (build-system python-build-system) (inputs `(("file" ,file))) @@ -10490,16 +10637,16 @@ Wikipedia code samples at (define-public python-cleo (package (name "python-cleo") - (version "0.6.1") + (version "0.6.8") (source (origin (method url-fetch) (uri (pypi-uri "cleo" version)) (sha256 (base32 - "0q1cf0szr0d54am4pypzwdnm74zpladdsinad94c2fz5i06fdpf7")))) + "06zp695hq835rkaq6irr1ds1dp2qfzyf32v60vxpd8rcnxv319l5")))) (build-system python-build-system) (native-inputs - `(;; For testing + `( ;; For testing ("python-mock" ,python-mock) ("python-pytest-mock" ,python-pytest-mock) ("python-pytest" ,python-pytest))) @@ -10517,16 +10664,203 @@ docstring and colored output.") (define-public python2-cleo (package-with-python2 python-cleo)) +(define-public python-tomlkit + (package + (name "python-tomlkit") + (version "0.5.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tomlkit" version)) + (sha256 + (base32 + "18820ga5z3if1w8dvykxrfm000akracq01ic402xrbljgbn5grn4")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page + "https://github.com/sdispater/tomlkit") + (synopsis "Style preserving TOML library") + (description + "TOML Kit is a 0.5.0-compliant TOML library. It includes a parser that +preserves all comments, indentations, whitespace and internal element ordering, +and makes them accessible and editable via an intuitive API. It can also +create new TOML documents from scratch using the provided helpers. Part of the +implementation as been adapted, improved and fixed from Molten.") + (license license:expat))) + +(define-public python-shellingham + (package + (name "python-shellingham") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "shellingham" version)) + (sha256 + (base32 + "1q7kws7w4x2hji3g7y0ni9ddk4sd676ylrb3db54gbpys6xj6nwq")))) + (build-system python-build-system) + (home-page + "https://github.com/sarugaku/shellingham") + (synopsis "Tool to detect surrounding shell") + (description + "Shellingham detects what shell the current Python executable is +running in.") + (license license:isc))) + +(define-public python-memcached + (package + (name "python-memcached") + (version "1.59") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-memcached" version)) + (sha256 + (base32 + "0kvyapavbirk2x3n1jx4yb9nyigrj1s3x15nm3qhpvhkpqvqdqm2")))) + (build-system python-build-system) + (propagated-inputs `(("python-six" ,python-six))) + (home-page + "https://github.com/linsomniac/python-memcached") + (synopsis "Pure python memcached client") + (description + "This software is a pure Python interface to the memcached memory cache +daemon. It is the client side software which allows storing values in one or +more, possibly remote, memcached servers.") + (license license:psfl))) + +(define-public python-clikit + (package + (name "python-clikit") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "clikit" version)) + (sha256 + (base32 + "0dc8czib5f4j9px1ivcpqnmivnx2zjpc0xb00ldrhsqylks7r06n")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pastel" ,python-pastel) + ("python-pylev" ,python-pylev))) + (home-page "https://github.com/sdispater/clikit") + (synopsis "Group of utilities to build command line interfaces") + (description + "CliKit is a group of utilities to build testable command line +interfaces.") + (license license:expat))) + +(define-public python-msgpack-python + (package + (name "python-msgpack-python") + (version "0.5.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "msgpack-python" version)) + (sha256 + (base32 + "16wh8qgybmfh4pjp8vfv78mdlkxfmcasg78lzlnm6nslsfkci31p")))) + (build-system python-build-system) + (home-page "http://msgpack.org/") + (synopsis "Package to deserialize messages in MessagePack binary format") + (description + "MessagePack is an efficient binary serialization format. It lets you +exchange data among multiple languages like JSON. But it's faster and +smaller. Small integers are encoded into a single byte, and typical short +strings require only one extra byte in addition to the strings themselves.") + (license license:asl2.0))) + +(define-public python-cachy + (package + (name "python-cachy") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cachy" version)) + (sha256 + (base32 + "0v6mjyhgx6j7ya20bk69cr3gdzdkdf6psay0h090rscclgji65dp")))) + (build-system python-build-system) + (native-inputs + `(("python-fakeredis" ,python-fakeredis) + ("python-flexmock" ,python-flexmock) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-memcached" ,python-memcached) + ("python-msgpack-python" ,python-msgpack-python) + ("python-redis" ,python-redis))) + (home-page "https://github.com/sdispater/cachy") + (synopsis "Simple yet effective caching library") + (description + "Cachy provides a simple yet effective caching library. A simple but +powerful API: thread-safety; decorator syntax; support for memcached, redis, +database, file, dict stores. Cachy supports python versions 2.7+ and 3.2+.") + (license license:expat))) + +(define-public poetry + (package + (name "poetry") + (version "0.12.17") + ;; Poetry can only be built from source with poetry. + (source + (origin + (method url-fetch) + (uri (pypi-uri "poetry" version)) + (sha256 + (base32 + "0gxwcd65qjmzqzppf53x51sic1rbcd9py6cdzx3aprppipimslvf")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ;; Pypi does not have tests. + #:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + ;; Bug in poetry https://github.com/sdispater/poetry/issues/866. + (invoke "sed" "-i" "-e" "s/from distutils.core/from setuptools/" + "setup.py") + #t))))) + (propagated-inputs + `(("python-cachecontrol" ,python-cachecontrol) + ("python-cachy" ,python-cachy) + ("python-cleo" ,python-cleo) + ("python-glob2" ,python-glob2) + ("python-html5lib" ,python-html5lib) + ("python-jsonschema" ,python-jsonschema) + ("python-msgpack" ,python-msgpack) + ("python-pathlib2" ,python-pathlib2) + ("python-pkginfo" ,python-pkginfo) + ("python-pyparsing" ,python-pyparsing) + ("python-pyrsistent" ,python-pyrsistent) + ("python-requests" ,python-requests) + ("python-requests-toolbelt" ,python-requests-toolbelt) + ("python-shellingham" ,python-shellingham) + ("python-tomlkit" ,python-tomlkit) + ("python-virtualenv" ,python-virtualenv))) + (home-page "https://poetry.eustace.io/") + (synopsis "Python dependency management and packaging made easy") + (description "Poetry is a tool for dependency management and packaging +in Python. It allows you to declare the libraries your project depends on and +it will manage (install/update) them for you.") + (license license:expat))) + (define-public python-lazy-object-proxy (package (name "python-lazy-object-proxy") - (version "1.3.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (pypi-uri "lazy-object-proxy" version)) (sha256 (base32 - "0yha7q9bhw857fwaby785d63mffhngl9npwzlk9i0pwlkwvbx4gb")))) + "1wgl0fmddi0ind78a74yyk2qrr9pb5llvj1892cdpp6z6n6mn4zx")))) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm-3.3))) (build-system python-build-system) (home-page "https://github.com/ionelmc/python-lazy-object-proxy") (synopsis "Lazy object proxy for python") @@ -12428,18 +12762,18 @@ clone, while other processes access the original tree.") (define-public python-astroid (package (name "python-astroid") - (version "2.1.0") + (version "2.3.3") (source (origin (method url-fetch) (uri (pypi-uri "astroid" version)) (sha256 - (base32 - "08hz675knh4294bancdapql392fmbjyimhbyrmfkz1ka7l035c1m")))) + (base32 "0fnibsl2cb5mvzbfm7sycj85smx48f8w8m7ks1sqlmpr9ps0gski")))) (build-system python-build-system) (propagated-inputs `(("python-lazy-object-proxy" ,python-lazy-object-proxy) ("python-six" ,python-six) + ("python-typed-ast" ,python-typed-ast) ("python-wrapt" ,python-wrapt))) (native-inputs `(("python-dateutil" ,python-dateutil) @@ -12506,7 +12840,8 @@ builds partial trees by inspecting living objects.") ,python2-backports-functools-lru-cache) ("python2-enum34" ,python2-enum34) ("python2-singledispatch" ,python2-singledispatch) - ,@(package-propagated-inputs base)))))) + ,@(alist-delete "python-typed-ast" + (package-propagated-inputs base))))))) (define-public python-isort (package @@ -14223,14 +14558,20 @@ such as figshare or Zenodo.") (define-public python-pyro4 (package (name "python-pyro4") - (version "4.75") + (version "4.77") (source (origin (method url-fetch) (uri (pypi-uri "Pyro4" version)) (sha256 - (base32 "1dfpp36imddx19yv0kd28gk1l71ckhpqy6jd590wpm2680jw15rq")))) + (base32 "0gsjg869y4gpy265s1gj1f2qy6jn5iz8r2bwwnq78r1r5yi15zib")))) (build-system python-build-system) + (arguments + '(#:tests? #f)) ;FIXME: Some tests require network access. + (native-inputs + `(("python-cloudpickle" ,python-cloudpickle) + ("python-dill" ,python-dill) + ("python-msgpack" ,python-msgpack))) (propagated-inputs `(("python-serpent" ,python-serpent))) (home-page "https://pyro4.readthedocs.io") @@ -14625,14 +14966,16 @@ source bytes using the UTF-8 encoding and then rewrites Python 3.6 style (define-public python-typed-ast (package (name "python-typed-ast") - (version "1.3.5") + (version "1.4.0") (source (origin - (method url-fetch) - (uri (pypi-uri "typed-ast" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/python/typed_ast.git") + (commit version))) (sha256 - (base32 - "1m7pr6qpana3cvqwiw7mlvrgvmw27ch5mx1592572xhlki8g85ak")))) + (base32 "0l0hz809f7i356kmqkvfsaswiidb98j9hs9rrjnfawzqcbffzgyb")) + (file-name (git-file-name name version)))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -14732,14 +15075,13 @@ Included are implementations of: (define-public bpython (package (name "bpython") - (version "0.17.1") + (version "0.18") (source (origin (method url-fetch) (uri (pypi-uri "bpython" version)) (sha256 - (base32 - "0bxhxi5zxdkrf8b4gwn0d363kdz3qnypjwhm1aydki53ph8ca1w9")))) + (base32 "1hl6frgvr2lqaxqczl8amg9xih32b3gzv429vs0qrjb8wpdj1k2n")))) (build-system python-build-system) (arguments `(#:phases @@ -14762,10 +15104,10 @@ Included are implementations of: (propagated-inputs `(("python-pygments" ,python-pygments) ("python-requests" ,python-requests) - ("python-babel" ,python-babel) ; optional, for internationalization + ("python-babel" ,python-babel) ; optional, for internationalization ("python-curtsies" ,python-curtsies) ; >= 0.1.18 ("python-greenlet" ,python-greenlet) - ("python-urwid" ,python-urwid) ; for bpython-urwid only + ("python-urwid" ,python-urwid) ; for bpython-urwid only ("python-six" ,python-six))) (native-inputs `(("python-sphinx" ,python-sphinx) @@ -14937,13 +15279,13 @@ working with iterables.") (define-public python-latexcodec (package (name "python-latexcodec") - (version "1.0.6") + (version "1.0.7") (source (origin (method url-fetch) (uri (pypi-uri "latexcodec" version)) (sha256 - (base32 "0s4wdbg0w2l8pj3i0y4510i0s04p8nhxcsa2z41bjsv0k66npb81")))) + (base32 "0wnp3yqcgx0rpy8dz51vh75lbp2qif67da19zi7m3ca98n887hgb")))) (build-system python-build-system) (inputs `(("python-six" ,python-six))) @@ -15065,16 +15407,16 @@ manager compatible with @code{asyncio}.") (define-public python-glob2 (package (name "python-glob2") - (version "0.6") + (version "0.7") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/miracle2k/python-glob2.git") - (commit version))) + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1lm1xz3k3l0k1c5bcp9hlzmi3gp5j8dl1k3xhpiq5mnm0xq6n163")))) + (base32 "160nh2ay9lw2hi0rixpzb2k87r6ql56k0j2cm87lqz8xc8zbw919")))) (build-system python-build-system) (home-page "https://github.com/miracle2k/python-glob2/") (synopsis "Extended Version of the python buildin glob module") @@ -16488,3 +16830,57 @@ It is the recommended replacement for Python's original @code{distro} also provides a command-line interface to output the platform information in various formats.") (license license:asl2.0))) + +(define-public python-cairosvg + (package + (name "python-cairosvg") + (version "2.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "CairoSVG" version)) + (sha256 + (base32 "1bb7irxbaxxb9ahm3z5wsx1q96mm5gzskc7b6q07h9ikcnb8yrjf")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "pytest")))))) + (propagated-inputs + `(("python-cairocffi" ,python-cairocffi) + ("python-cssselect2" ,python-cssselect2) + ("python-defusedxml" ,python-defusedxml) + ("python-pillow" ,python-pillow) + ("python-tinycss2" ,python-tinycss2))) + (native-inputs + `(("python-pytest-flake8" ,python-pytest-flake8) + ("python-pytest-isort" ,python-pytest-isort) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://cairosvg.org/") + (synopsis "SVG to PDF/PS/PNG converter based on Cairo") + (description "CairoSVG is a SVG converter based on Cairo. It can export +SVG files to PDF, PostScript and PNG files. The main part of CairoSVG is a +SVG parser, trying to follow the SVG 1.1 recommendation from the W3C. Once +parsed, the result is drawn to a Cairo surface that can be exported to +qvarious formats: PDF, PostScript, PNG and even SVG.") + (license license:lgpl3+))) + +(define-public python-pyphen + (package + (name "python-pyphen") + (version "0.9.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pyphen" version)) + (sha256 + (base32 "08c9y69ry9d6m4zalhnalg86lsp9v2j5n1ziw5vxfmiihx83lqrv")))) + (build-system python-build-system) + ;; TODO: Use the Guix system hyphenation packages hyphen-* rather than the + ;; embedded set provided by upstream - like Debian does. + (home-page "https://github.com/Kozea/Pyphen") + (synopsis "Pure Python module to hyphenate text") + (description "Pyphen is a pure Python module to hyphenate text using +existing Hunspell hyphenation dictionaries.") + (license (list license:gpl2 license:lgpl2.1 license:mpl1.1)))) |