diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 1119 |
1 files changed, 1005 insertions, 114 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9da8e47755..0c06b32907 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -88,7 +88,7 @@ ;;; Copyright © 2020 Malte Frank Gerdes <malte.f.gerdes@gmail.com> ;;; Copyright © 2020 Joseph LaFreniere <joseph@lafreniere.xyz> ;;; Copyright © 2020 Tim Gesthuizen <tim.gesthuizen@yahoo.de> -;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki@gmail.com> +;;; Copyright © 2020, 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; Copyright © 2020 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; Copyright © 2020 Diego N. Barbato <dnbarbato@posteo.de> ;;; Copyright © 2020 Leo Prikler <leo.prikler@student.tugraz.at> @@ -217,6 +217,172 @@ #:use-module (srfi srfi-1) #:use-module (srfi srfi-26)) +(define-public python-colorful + (package + (name "python-colorful") + (version "0.5.4") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "colorful" version)) + (sha256 + (base32 "1sh7g2cn1fyz2hzmzs933razdxi2bna9i1lxa790r9pdwba8m146")))) + (build-system python-build-system) + ;; FIXME: tests cannot be computed: + ;; "Can't perform this operation for unregistered loader type" + (arguments + `(#:tests? #f)) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-flake8" ,python-flake8) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-colorama" ,python-colorama))) + (home-page "http://github.com/timofurrer/colorful") + (synopsis "Terminal string styling") + (description "Colorful provides an array of text styles, that can be used +as functions or string constants to form colored terminal output.") + (license license:expat))) + +(define-public python-yaspin + (package + (name "python-yaspin") + (version "1.5.0") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "yaspin" version)) + (sha256 + (base32 "1iirah0kydrdp505qnjj6gi54avcr7z0hbkfx9vmh8myr30rpz6q")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/pavdmyt/yaspin") + (synopsis "Yet Another Terminal Spinner") + (description "Yaspin provides a terminal spinner to indicate the progress +during long operations.") + (license license:expat))) + +(define-public python-lunr + (package + (name "python-lunr") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "lunr" version)) + (sha256 + (base32 "106akalywfmnypzkdrhgz4n4740a8xayspybsw59kq06vz8i2qrc")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-nltk" ,python-nltk-3.4))) + (home-page + "https://github.com/yeraydiazdiaz/lunr.py") + (synopsis "Full-text search library") + (description "This package provides python library for full-text search. +It indexes documents and provides a search interface for retrieving documents +that best match text queries.") + (license license:expat))) + +(define-public python-mkdocs + (package + (name "python-mkdocs") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "mkdocs" version)) + (sha256 + (base32 "0fgv5zawpyyv0vd4j5y8m4h058lh9jkwfcm0xy4pg7dr09a1xdph")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Requirements refer to a specific version of dependencies, + ;; which are too old. So we patch to refer to any later version. + (add-after 'unpack 'patch-requirements + (lambda _ + (substitute* "setup.py" + (("==") ">="))))))) + (propagated-inputs + `(("python-click" ,python-click) + ("python-jinja2" ,python-jinja2) + ("python-livereload" ,python-livereload) + ("python-lunr" ,python-lunr) + ("python-markdown" ,python-markdown) + ("python-pyyaml" ,python-pyyaml) + ("python-tornado" ,python-tornado))) + (home-page "https://www.mkdocs.org") + (synopsis "Project documentation with Markdown") + (description "MkDocs is a static site generator geared towards building +project documentation. Documentation source files are written in Markdown, and +configured with a single YAML configuration file.") + (license license:bsd-3))) + +(define-public python-pymdown-extensions + (package + (name "python-pymdown-extensions") + (version "8.1.1") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "pymdown-extensions" version)) + (sha256 + (base32 "0d8pdndrl1kj105lq7r6kw2dnhcvll6h2qs07w71mcpi7gx728v3")))) + (build-system python-build-system) + ;; FIXME: "AssertionError: False is not true" + (arguments + `(#:tests? #f)) + (propagated-inputs + `(("python-markdown" ,python-markdown))) + (home-page "https://github.com/facelessuser/pymdown-extensions") + (synopsis "Extension pack for Python Markdown") + (description "PyMdown Extensions is a collection of extensions for Python +Markdown. All extensions are found under the module namespace of pymdownx.") + (license license:expat))) + +(define-public python-mkdocs-material + (package + (name "python-mkdocs-material") + (version "7.1.3") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "mkdocs-material" version)) + (sha256 + (base32 "0ci9xiasq9nfn09v11m7p49vzazdbgslw7rpzjd6y3hsmn9vljz3")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Requirement mkdocs-material-extensions + ;; in-turn requires mkdocs-material. This causes + ;; circular dependency, so we remove this requirement. + (add-after 'unpack 'patch-requirements + (lambda _ + (substitute* "requirements.txt" + (("mkdocs-material-extensions.*$") ""))))))) + (propagated-inputs + `(("python-markdown" ,python-markdown) + ("python-mkdocs" ,python-mkdocs) + ("python-pygments" ,python-pygments) + ("python-pymdown-extensions" + ,python-pymdown-extensions))) + (home-page "https://squidfunk.github.io/mkdocs-material/") + (synopsis "Material Design theme for MkDocs") + (description "This package provides a theme plugin for the static site +generator MkDocs.") + (license license:expat))) + (define-public python-slixmpp (package (name "python-slixmpp") @@ -948,6 +1114,39 @@ concepts.") (define-public python2-h5py (package-with-python2 python-h5py)) +(define-public python-pyls-black + (package + (name "python-pyls-black") + (version "0.4.6") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/rupert/pyls-black/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0cjf0mjn156qp0x6md6mncs31hdpzfim769c2lixaczhyzwywqnj")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest")) + (propagated-inputs + `(("python-black" ,python-black) + ("python-language-server" + ,python-language-server) + ("python-toml" ,python-toml))) + (native-inputs + `(("python-flake8" ,python-flake8) + ("python-isort" ,python-isort) + ("python-mypy" ,python-mypy) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/rupert/pyls-black") + (synopsis "Black plugin for the Python Language Server") + (description "Black plugin for the Python Language Server.") + (license license:expat))) + (define-public python-sh (package (name "python-sh") @@ -3160,32 +3359,6 @@ memory usage and transliteration quality.") (define-public python2-pyjwt (package-with-python2 python-pyjwt)) -(define-public python-pykka - (package - (name "python-pykka") - (version "1.2.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "Pykka" version)) - (sha256 - (base32 - "049w3r0mdnnw7xv19jiq7rvls9k7xs73x05b4qs5d6z4vvmgyiz8")))) - (build-system python-build-system) - (native-inputs - `(("python-mock" ,python-mock) - ("python-nose" ,python-nose) - ("python-gevent" ,python-gevent) - ("python-eventlet" ,python-eventlet))) - (home-page "https://www.pykka.org/") - (synopsis "Pykka is a Python implementation of the actor model") - (description - "Pykka is a Python implementation of the actor model. -The actor model introduces some simple rules to control the sharing -of state and cooperation between execution units, which makes it -easier to build concurrent applications.") - (license license:asl2.0))) - (define-public python-pymsgbox (package (name "python-pymsgbox") @@ -4297,10 +4470,27 @@ Server (PLS).") (base32 "1c0pnk2aibfhfaanrs0a5gkabkvz81gj20z7r0152b7fcx5ci14r")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-deps + (lambda _ + (substitute* "setup.py" (("pycodestyle>=2.6.0,<2.7.0") + "pycodestyle")) + (substitute* "setup.py" (("pyflakes>=2.2.0,<2.3.0") "pyflakes")) + #t)) + (add-before 'check 'set-HOME + (lambda _ (setenv "HOME" "/tmp") #t)) + (replace 'check + (lambda _ + ;; Disable failing test. + (invoke "python" "-m" "pytest" "-k" + "not test_pyqt_completion")))))) (propagated-inputs `(("python-autopep8" ,python-autopep8) ("python-configparser" ,python-configparser) ("python-pydocstyle" ,python-pydocstyle) + ("python-flake8" ,python-flake8) ("python-future" ,python-future) ("python-jedi" ,python-jedi) ("python-jsonrpc-server" ,python-jsonrpc-server) @@ -5666,6 +5856,17 @@ Python code against some of the style conventions in (define-public python2-pycodestyle (package-with-python2 python-pycodestyle)) +(define-public python-pycodestyle-2.6 + (package + (inherit python-pycodestyle) + (version "2.6.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pycodestyle" version)) + (sha256 + (base32 + "0bhr6ia0hmgx3nhgibc9pmkzhlh1zcqk707i5fbxgs702ll7v2n5")))))) + (define-public python-multidict (package (name "python-multidict") @@ -5888,13 +6089,13 @@ the OleFileIO module from PIL, the Python Image Library.") (define-public python-pikepdf (package (name "python-pikepdf") - (version "2.10.0") + (version "2.11.4") (source (origin (method url-fetch) (uri (pypi-uri "pikepdf" version)) (sha256 - (base32 "09wfj1hjvj3r9gv7ywrqd7h3d0bz64bvils8sm3ghj90jhalb03s")))) + (base32 "0kd5ydnsmlikkg69r255wvq4vy7plh7dx077s2saly5s5vdcqlkk")))) (build-system python-build-system) (arguments `(#:tests? #false)) ;require python-xmp-toolkit @@ -6034,17 +6235,99 @@ a general image processing tool.") (description "This package is a fork of Pillow which adds support for SIMD parallelism."))) +(define-public python-imagecodecs + (package + (name "python-imagecodecs") + (version "2021.3.31") + (source + (origin + (method url-fetch) + (uri (pypi-uri "imagecodecs" version)) + (sha256 + (base32 + "0q7pslb6wd56vbcq2mdxwsiha32mxjr7mgqqfbq5w42q601p9pi0")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Unbundle 3rd party modules. + (delete-file-recursively "3rdparty") + ;; Delete pre-generated Cython files. + (for-each delete-file (find-files "imagecodecs" "_.*\\.c$")) + #t)))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Tests are disabled, because dependencies are missing. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'create-configuration + (lambda* (#:key inputs #:allow-other-keys) + ;; By default everything is enabled. We can selectively disable + ;; extensions (and thus dependencies) by deleting them from the + ;; EXTENSIONS dictionary. This is upstream’s preferred way. + (call-with-output-file "imagecodecs_distributor_setup.py" + (lambda (port) + (format port "\ +def customize_build(EXTENSIONS, OPTIONS): + del EXTENSIONS['aec'] + del EXTENSIONS['avif'] + del EXTENSIONS['bitshuffle'] + del EXTENSIONS['deflate'] + del EXTENSIONS['jpeg2k'] + del EXTENSIONS['jpeg12'] + del EXTENSIONS['jpegls'] + del EXTENSIONS['jpegxl'] + del EXTENSIONS['jpegxr'] + del EXTENSIONS['lerc'] + del EXTENSIONS['ljpeg'] + del EXTENSIONS['lzf'] + del EXTENSIONS['zfp'] + del EXTENSIONS['zopfli'] + OPTIONS['cythonize'] +"))) + #t))))) + (inputs + `(("c-blosc" ,c-blosc) + ("giflib" ,giflib) + ("google-brotli" ,google-brotli) + ("libjpeg-turbo" ,libjpeg-turbo) + ("libpng" ,libpng) + ("libtiff" ,libtiff) + ("libwebp" ,libwebp) + ("lz4" ,lz4) + ("snappy" ,snappy) + ("xz" ,xz) + ("zlib" ,zlib) + ("zstd" ,zstd "lib"))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + ;; For building. + `(("python-cython" ,python-cython) + ;; For testing. Incomplete. + ;("python-numcodecs" ,python-numcodecs) + ;("python-zarr" ,python-zarr) + ;("python-pytest" ,python-pytest) + )) + (home-page "https://www.lfd.uci.edu/~gohlke/") + (synopsis + "Image transformation, compression, and decompression codecs") + (description + "Imagecodecs is a Python library that provides block-oriented, in-memory +buffer transformation, compression, and decompression functions for use in the +tifffile, czifile, and other scientific image input/output modules.") + (license license:bsd-3))) + (define-public python-roifile (package (name "python-roifile") - (version "2020.5.28") + (version "2020.11.28") (source (origin (method url-fetch) (uri (pypi-uri "roifile" version)) (sha256 (base32 - "1vwbwfsw745gyqymff6dllc5zqjsgqmxaw245sw4an6yw9rcbzc0")))) + "04argnc7qccybkrj9ww18bf81ghsghhh93hnqy3p111rcdlyn66p")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; there are none (propagated-inputs @@ -6059,21 +6342,20 @@ regions of interest, geometric shapes, paths, text, etc for image overlays.") (define-public python-tifffile (package (name "python-tifffile") - (version "2020.6.3") + (version "2021.4.8") (source (origin (method url-fetch) (uri (pypi-uri "tifffile" version)) (sha256 (base32 - "0xv3ynkbrsibqvx7250075idb7wm3canjd6lx2nzf3cbp6l07577")))) + "16r0hw7shka1bqf28bv198lj2jhf2r9gy3s5zv4nf5cfsfm8pajm")))) (build-system python-build-system) ;; Tests require lfdfiles, which depends on tifffile (arguments `(#:tests? #f)) (propagated-inputs `(("python-numpy" ,python-numpy) - ;;("python-lfdfiles" ,python-lfdfiles) - ("python-roifile" ,python-roifile))) + ("python-imagecodecs" ,python-imagecodecs))) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Read and write TIFF(r) files") (description "This package lets you read image and metadata from many @@ -6085,19 +6367,28 @@ numpy arrays to TIFF, BigTIFF, and ImageJ hyperstack compatible files.") (define-public python-lfdfiles (package (name "python-lfdfiles") - (version "2020.1.1") + (version "2021.2.22") (source (origin (method url-fetch) (uri (pypi-uri "lfdfiles" version)) (sha256 (base32 - "1n9bkfn4vxl0lbhzd0m35lq86ayx5fwcj3ghpfl2vbjbsnfp3h47")))) + "12fxm4v805dgjrih7x6jnl1wd7y7jw1rkhjs3d4am8s6qk1cbar2")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete pre-generated Cython files. + (for-each delete-file (find-files "lfdfiles" "_.*\\.c$")) + #t)))) (build-system python-build-system) + (arguments + `(#:tests? #f)) ; No tests exist, despite a test dependency on pytest. (propagated-inputs `(("python-click" ,python-click) ("python-numpy" ,python-numpy) ("python-tifffile" ,python-tifffile))) + (native-inputs `(("python-cython" ,python-cython))) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Work with LFD data files") (description @@ -6193,7 +6484,7 @@ a front-end for C compilers or analysis tools.") (define-public python-xlsxwriter (package (name "python-xlsxwriter") - (version "1.3.7") + (version "1.3.9") (source (origin ;; There are no tests in the PyPI tarball. @@ -6203,7 +6494,7 @@ a front-end for C compilers or analysis tools.") (commit (string-append "RELEASE_" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1qg40r2mwrqfmhaxnary1cfgi0dwwazp5qga7c9p2cdji2v0x5rm")))) + (base32 "04idf331rp0iyhlnh7268jmim8ydw4jjb81hr5rh548sqnq4bhpl")))) (build-system python-build-system) (home-page "https://github.com/jmcnamara/XlsxWriter") (synopsis "Python module for creating Excel XLSX files") @@ -7246,10 +7537,41 @@ without using the configuration machinery.") (base32 "1d12j5hkff0xiax87pnhmzbsph3jqqzhz16h8xld7z2y4armq0kr")))) (build-system python-build-system) - ;; FIXME: not sure how to run the tests - (arguments `(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + ; Some tests write to $HOME. + (setenv "HOME" "/tmp") + ; Some tests load the installed package. + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv")))) + (add-after 'unpack 'patch-testsuite + (lambda _ + ;; test_not_on_path() and test_path_priority() try to run a test + ;; that loads jupyter_core, so we need PYTHONPATH + (substitute* "jupyter_core/tests/test_command.py" + (("env = \\{'PATH': ''\\}") + "env = {'PATH': '', 'PYTHONPATH': os.environ['PYTHONPATH']}") + (("env = \\{'PATH': str\\(b\\)\\}") + "env = {'PATH': str(b), 'PYTHONPATH': os.environ['PYTHONPATH']}")) + #t))))) (propagated-inputs `(("python-traitlets" ,python-traitlets))) + (native-inputs + `(("python-six" ,python-six) + ("python-pytest" ,python-pytest))) + ;; This package provides the `jupyter` binary and thus also exports the + ;; search paths. + (native-search-paths + (list (search-path-specification + (variable "JUPYTER_CONFIG_DIR") + (files '("etc/jupyter"))) + (search-path-specification + (variable "JUPYTER_PATH") + (files '("share/jupyter"))))) (home-page "https://jupyter.org/") (synopsis "Jupyter base package") (description @@ -7268,19 +7590,22 @@ without using the configuration machinery.") (base32 "10p7fcgvv9hvz9zical9wk68ks5ssak2ykbzx65wm1k1hk8a3g64")))) (build-system python-build-system) - ;; Tests fail because of missing native python kernel which I assume is - ;; provided by the ipython package, which we cannot use because it would - ;; cause a dependency cycle. (arguments - `(#:tests? #f - #:phases (modify-phases %standard-phases - (add-after 'unpack 'set-tool-file-names - (lambda* (#:key inputs #:allow-other-keys) - (let ((iproute (assoc-ref inputs "iproute"))) - (substitute* "jupyter_client/localinterfaces.py" - (("'ip'") - (string-append "'" iproute "/sbin/ip'"))) - #t)))))) + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-tool-file-names + (lambda* (#:key inputs #:allow-other-keys) + (let ((iproute (assoc-ref inputs "iproute"))) + (substitute* "jupyter_client/localinterfaces.py" + (("'ip'") + (string-append "'" iproute "/sbin/ip'"))) + #t))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Some tests try to write to $HOME. + (setenv "HOME" "/tmp") + (invoke "pytest" "-vv"))))))) (inputs `(("iproute" ,iproute))) (propagated-inputs @@ -7290,7 +7615,14 @@ without using the configuration machinery.") ("python-tornado" ,python-tornado-6) ("python-traitlets" ,python-traitlets))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest) + ("python-pytest-asyncio" ,python-pytest-asyncio) + ("python-pytest-timeout" ,python-pytest-timeout) + ("python-async-generator" ,python-async-generator) + ("python-mock" ,python-mock) + ("python-msgpack" ,python-msgpack) + ("python-ipython" ,python-ipython) + ("python-ipykernel" ,python-ipykernel-bootstrap))) (home-page "https://jupyter.org/") (synopsis "Jupyter protocol implementation and client libraries") (description @@ -7300,6 +7632,20 @@ for working with kernels, and the @code{jupyter kernelspec} entrypoint for installing @code{kernelspec}s for use with Jupyter frontends.") (license license:bsd-3))) +;; Bootstrap variant of jupyter-client, which breaks the loop between ipykernel +;; and jupyter-client by removing the former from its native-inputs and +;; disabling tests. +(define-public python-jupyter-client-bootstrap + (let ((base python-jupyter-client)) + (hidden-package + (package + (inherit base) + (name "python-jupyter-client-bootstrap") + (arguments + `(#:tests? #f + ,@(package-arguments base))) + (native-inputs `()))))) + (define-public python2-jupyter-client (package-with-python2 python-jupyter-client)) @@ -7334,6 +7680,8 @@ installing @code{kernelspec}s for use with Jupyter frontends.") #t)))))) (propagated-inputs `(("python-ipython" ,python-ipython) + ("python-tornado" ,python-tornado-6) + ("python-traitlets" ,python-traitlets) ;; imported at runtime during connect ("python-jupyter-client" ,python-jupyter-client))) (native-inputs @@ -7346,6 +7694,19 @@ installing @code{kernelspec}s for use with Jupyter frontends.") "This package provides the IPython kernel for Jupyter.") (license license:bsd-3))) +;; Bootstrap variant of ipykernel, which uses the bootstrap jupyter-client to +;; break the cycle between ipykernel and jupyter-client. +(define-public python-ipykernel-bootstrap + (let ((parent python-ipykernel)) + (hidden-package + (package + (inherit parent) + (name "python-ipykernel-bootstrap") + (propagated-inputs + `(("python-jupyter-client" ,python-jupyter-client-bootstrap) + ,@(fold alist-delete (package-propagated-inputs parent) + '("python-jupyter-client")))))))) + (define-public python-pari-jupyter (package (name "python-pari-jupyter") @@ -7689,6 +8050,43 @@ features useful for text console applications.") supports @code{readline} shortcuts.") (license license:expat))) +(define-public python-textdistance + (package + (name "python-textdistance") + (version "4.2.1") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/life4/textdistance") + (commit (string-append "v." version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1g17i356fnny4k6hjr2ayy9k77jbvd6zzmngws2kbrnvhss1wgwf")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-external-test + (lambda _ + ;; All tests in this file require external libraries. + (delete-file "tests/test_external.py") + #t))))) + (native-inputs + `(("python-hypothesis" ,python-hypothesis) + ("python-isort" ,python-isort) + ("python-numpy" ,python-numpy) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner) + ("python-tabulate" ,python-tabulate))) + (home-page "https://github.com/life4/textdistance") + (synopsis "Compute distance between the two texts") + (description "@code{textdistance} is a pure Python library for comparing +distance between two or more sequences by many algorithms.") + (license license:expat))) + (define-public python-urwidtrees (package (name "python-urwidtrees") @@ -8080,6 +8478,40 @@ solve linear problems.") algorithm.") (license license:asl2.0))) +(define-public python-three-merge + (package + (name "python-three-merge") + (version "0.1.1") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/spyder-ide/three-merge") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1fw28swh6jq4myr09j7gv68l241b8vwg470ak5xv0x4xwh2a1m86")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest")) + (propagated-inputs + `(("python-diff-match-patch" ,python-diff-match-patch))) + (native-inputs + `(("python-flaky" ,python-flaky) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner) + ("python-pytest-timeout" ,python-pytest-timeout))) + (home-page "https://github.com/spyder-ide/three-merge") + (synopsis "Library for merging two strings with respect to a base one") + (description + "This package provides a Python library to perform a 3-way merge between +strings, based on @code{diff-match-patch}. This library performs merges at a +character level, as opposed to most VCS systems, which opt for a line-based +approach.") + (license license:expat))) + (define-public snakemake (package (name "snakemake") @@ -8620,6 +9052,17 @@ PEP 8.") (define-public python2-pyflakes (package-with-python2 python-pyflakes)) +(define-public python-pyflakes-2.2 + (package + (inherit python-pyflakes) + (version "2.2.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyflakes" version)) + (sha256 + (base32 + "1j3zqbiwkyicvww499bblq33x0bjpzdrxajhaysr7sk7x5gdgcim")))))) + (define-public python-mccabe (package (name "python-mccabe") @@ -8648,23 +9091,21 @@ cyclomatic complexity of Python source code.") (define-public python-flake8 (package (name "python-flake8") - (version "3.9.0") + (version "3.9.1") (source (origin (method url-fetch) (uri (pypi-uri "flake8" version)) (sha256 (base32 - "1w65iyjnrwipv4dbcqxh725ri7mdx01d6pjyggd97c0j5cvkx1vq")))) + "0y732h02n2aih8gzyfj4bbhg4jgahyv84mjwfindk2g6w45rka0s")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - (delete 'check) - (add-after 'install 'check + (replace 'check (lambda* (#:key inputs outputs #:allow-other-keys) (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-v") - #t))))) + (invoke "pytest" "-v")))))) (propagated-inputs `(("python-pycodestyle" ,python-pycodestyle) ("python-entrypoints" ,python-entrypoints) @@ -8672,7 +9113,7 @@ cyclomatic complexity of Python source code.") ("python-mccabe" ,python-mccabe))) (native-inputs `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest-bootstrap))) + ("python-pytest" ,python-pytest))) (home-page "https://gitlab.com/pycqa/flake8") (synopsis "The modular source code checker: pep8, pyflakes and co") @@ -8691,6 +9132,22 @@ cyclomatic complexity of Python source code.") ("python2-typing" ,python2-typing) ,@(package-propagated-inputs base)))))) +(define-public python-flake8-3.8 + (package + (inherit python-flake8) + (version "3.8.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "flake8" version)) + (sha256 + (base32 + "0fvcrsbyzjpcli8ldbpsdbpmf238nkvwc1dy4hy82lf63rvfinma")))) + (propagated-inputs + `(("python-pycodestyle" ,python-pycodestyle-2.6) + ("python-entrypoints" ,python-entrypoints) + ("python-pyflakes" ,python-pyflakes-2.2) + ("python-mccabe" ,python-mccabe))))) + (define-public python-flake8-bugbear (package (name "python-flake8-bugbear") @@ -8776,7 +9233,7 @@ These should be used in preference to using a backslash for line continuation. correct string literal concatenation. It looks for style problems like implicitly concatenated string literals on -the same line (which can be introduced by the code formating tool Black), or +the same line (which can be introduced by the code formatting tool Black), or unnecessary plus operators for explicit string literal concatenation.") (license license:expat))) @@ -9321,14 +9778,14 @@ reading and writing MessagePack data.") (define-public python-netaddr (package (name "python-netaddr") - (version "0.7.19") + (version "0.8.0") (source (origin (method url-fetch) (uri (pypi-uri "netaddr" version)) (sha256 (base32 - "1zdfadvpq4lmcqzr383gywxn4xyn355kj1n3lk9q2l03vmyfrbiq")))) + "0hx2npi0wnhwlcybilgwlddw6qffx1mb7a3sj4p9s7bvl33mgk6n")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;; No tests. (home-page "https://github.com/drkjam/netaddr/") @@ -9755,9 +10212,9 @@ implementations of ASN.1-based codecs and protocols.") (define-public python2-pyasn1-modules (package-with-python2 python-pyasn1-modules)) -(define-public python-ipaddress +(define-public python2-ipaddress (package - (name "python-ipaddress") + (name "python2-ipaddress") (version "1.0.23") (source (origin (method url-fetch) @@ -9766,6 +10223,8 @@ implementations of ASN.1-based codecs and protocols.") (base32 "1qp743h30s04m3cg3yk3fycad930jv17q7dsslj4mfw0jlvf1y5p")))) (build-system python-build-system) + (arguments + `(#:python ,python-2)) (home-page "https://github.com/phihag/ipaddress") (synopsis "IP address manipulation library") (description @@ -9775,9 +10234,6 @@ implementations of ASN.1-based codecs and protocols.") module to older versions of Python.") (license license:psfl))) -(define-public python2-ipaddress - (package-with-python2 python-ipaddress)) - (define-public python2-ipaddr (package (name "python2-ipaddr") @@ -10167,25 +10623,103 @@ Debian-related files, such as: ;; Modules are either GPLv2+ or GPLv3+. (license license:gpl3+))) +(define-public python-json-spec + (package + (name "python-json-spec") + (version "0.10.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "json-spec" version)) + (sha256 + (base32 + "06dpbsq61ja9r89wpa2pzdii47qh3xri9ajdrgn1awfl102znchb")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pathlib" ,python-pathlib) + ("python-six" ,python-six))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "http://py.errorist.io/json-spec") + (synopsis + "JSON Schema, JSON Pointer and JSON Reference for Python") + (description + "This Python library implements several JSON specs, like JSON Schema, +JSON Reference and JSON Pointer.") + (license license:bsd-3))) + +(define-public python-fastjsonschema + (package + (name "python-fastjsonschema") + (version "2.15.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fastjsonschema" version)) + (sha256 + (base32 + "0xknp399gpdjf08lrq2yvv66s7nsc51fgbm6vph7vyyg1ckbmv71")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Fail with a strange backtrace ending in importlib. + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv" "-m" "not benchmark"))))))) + (native-inputs + `(("python-colorama" ,python-colorama) + ("python-json-spec" ,python-json-spec) + ("python-jsonschema" ,python-jsonschema) + ("python-pylint" ,python-pylint) + ("python-pytest" ,python-pytest-6) + ("python-pytest-benchmark" + ,python-pytest-benchmark) + ("python-pytest-cache" ,python-pytest-cache) + ("python-validictory" ,python-validictory))) + (home-page + "https://github.com/horejsek/python-fastjsonschema") + (synopsis + "Fast Python implementation of JSON schema") + (description + "This library implements validation of JSON documents by JSON schema for +drafts 04, 06 and 07.") + (license license:bsd-3))) + (define-public python-nbformat (package (name "python-nbformat") (version "5.1.3") - (source - (origin - (method url-fetch) - (uri (pypi-uri "nbformat" version)) - (sha256 - (base32 - "1j6idwsw59cslsssvlkg2bkfpvd6ri7kghbp14jwcw87sy57h5mm")))) + ;; The PyPi release tarball lacks some test cases and test data. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jupyter/nbformat.git") + (commit version))) + (sha256 + (base32 + "033v16cfmxzh3jn5phnil4p3silr49iwh9wiigzhv0crc6sanvwz")) + (file-name (git-file-name name version)))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) (propagated-inputs `(("python-ipython-genutils" ,python-ipython-genutils) ("python-jsonschema" ,python-jsonschema) ("python-jupyter-core" ,python-jupyter-core) ("python-traitlets" ,python-traitlets))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest) + ("python-fastjsonschema" ,python-fastjsonschema) ; This is only active + ; when setting NBFORMAT_VALIDATOR="fastjsonschema", so include it for + ; testing only. + ("python-testpath" ,python-testpath))) (home-page "https://jupyter.org") (synopsis "Jupyter Notebook format") (description "This package provides the reference implementation of the @@ -10368,32 +10902,88 @@ time.") (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-paths-and-tests + (lambda _ + ;; Use pandoc binary from input. + (substitute* "nbconvert/utils/pandoc.py" + (("'pandoc'") (string-append "'" (which "pandoc") "'"))) + ;; Same for LaTeX. + (substitute* "nbconvert/exporters/pdf.py" + (("\"xelatex\"") (string-append "\"" (which "xelatex") "\"")) + (("\"bibtex\"") (string-append "\"" (which "bibtex") "\""))) + ;; Make sure tests are not skipped. + (substitute* (find-files "." "test_.+\\.py$") + (("@onlyif_cmds_exist\\(('(pandoc|xelatex)'(, )?)+\\)") "")) + ;; Pandoc is never missing, disable test. + (substitute* "nbconvert/utils/tests/test_pandoc.py" + (("import os" all) (string-append all "\nimport pytest")) + (("(.+)(def test_pandoc_available)" all indent def) + (string-append indent "@pytest.mark.skip('disabled by guix')\n" + indent def))) + ;; Not installing pyppeteer, delete test. + (delete-file "nbconvert/exporters/tests/test_webpdf.py") + (substitute* "nbconvert/tests/test_nbconvertapp.py" + (("(.+)(def test_webpdf_with_chromium)" all indent def) + (string-append indent "@pytest.mark.skip('disabled by guix')\n" + indent def))))) (replace 'check (lambda* (#:key tests? inputs outputs #:allow-other-keys) (when tests? + ;; Some tests invoke the installed nbconvert binary. (add-installed-pythonpath inputs outputs) - - ;; This seems to require Chromium. - (delete-file "nbconvert/exporters/tests/test_webpdf.py") - - ;; This depends on the python3 kernel, which is provided by a - ;; package that depends on nbconvert. - (delete-file "nbconvert/preprocessors/tests/test_execute.py") - - ;; Most of these tests fail because nbconvert fails to execute - ;; itself. - (delete-file "nbconvert/tests/test_nbconvertapp.py") - - ;; One test here fails with an unclear error. It looks like - ;; "%%pylabprint" is supposed to be expanded to some other - ;; code, but isn't. - (delete-file "nbconvert/filters/tests/test_strings.py") - + ;; Tries to write to this path. + (unsetenv "JUPYTER_CONFIG_DIR") + ;; Tests depend on templates installed to output. + (setenv "JUPYTER_PATH" + (string-append + (assoc-ref outputs "out") + "/share/jupyter:" + (getenv "JUPYTER_PATH"))) ;; Some tests need HOME (setenv "HOME" "/tmp") - (invoke "pytest"))))))) + (invoke "pytest" "-vv"))))))) + (inputs + `(("pandoc" ,pandoc) + ;; XXX: Disabled, needs substitute*. + ;;("inkscape" ,inkscape) + )) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-ipykernel" ,python-ipykernel) + ;; XXX: Disabled, not in guix. + ;;("python-pyppeteer" ,python-pyppeteer) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-dependency" ,python-pytest-dependency) + ("texlive" ,(texlive-union (list texlive-adjustbox + texlive-amsfonts/patched + texlive-booktabs + texlive-caption + texlive-eurosym + texlive-fonts-rsfs + texlive-generic-ulem + texlive-iftex + texlive-jknappen + texlive-latex-amsmath + texlive-latex-enumitem + texlive-latex-fancyvrb + texlive-latex-float + texlive-latex-fontspec + texlive-latex-geometry + texlive-latex-hyperref + texlive-latex-jknapltx + texlive-latex-ms + texlive-latex-oberdiek + texlive-latex-parskip + texlive-latex-trimspaces + texlive-latex-upquote + texlive-latex-ucs + texlive-lm + texlive-mathpazo + texlive-tcolorbox + texlive-titling + texlive-tools + texlive-xcolor + texlive-zapfding))))) (propagated-inputs `(("python-bleach" ,python-bleach) ("python-defusedxml" ,python-defusedxml) @@ -10407,7 +10997,9 @@ time.") ("python-pygments" ,python-pygments) ("python-jupyterlab-pygments" ,python-jupyterlab-pygments) ("python-testpath" ,python-testpath) - ("python-traitlets" ,python-traitlets))) + ("python-traitlets" ,python-traitlets) + ;; Required, even if [serve] is not used. + ("python-tornado" ,python-tornado-6))) (home-page "https://jupyter.org") (synopsis "Converting Jupyter Notebooks") (description "The @code{nbconvert} tool, @{jupyter nbconvert}, converts @@ -10476,6 +11068,9 @@ convert an @code{.ipynb} notebook file into various static formats including: (delete-file-recursively "notebook/tests/selenium") (when tests? (add-installed-pythonpath inputs outputs) + ;; Some tests do not expect all files to be installed in the + ;; same directory, but JUPYTER_PATH contains multiple entries. + (unsetenv "JUPYTER_PATH") ;; Some tests need HOME (setenv "HOME" "/tmp") (with-directory-excursion "/tmp" @@ -10730,10 +11325,6 @@ popular online obfuscators.") ("python-nbconvert" ,python-nbconvert) ("python-notebook" ,python-notebook) ("python-qtconsole" ,python-qtconsole))) - (native-search-paths - (list (search-path-specification - (variable "JUPYTER_PATH") - (files '("share/jupyter"))))) (home-page "https://jupyter.org") (synopsis "Web application for interactive documents") (description @@ -11025,6 +11616,44 @@ for atomic file system operations.") (define-public python2-atomicwrites (package-with-python2 python-atomicwrites)) +(define-public python-qstylizer + (package + (name "python-qstylizer") + (version "0.1.10") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/blambright/qstylizer") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zvkn6g1dn51kkw33v8qrlnwlmf5h6sw1ay3bh14ifjr8b9xsjjz")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + (add-before 'build 'set-pbr-version + (lambda _ + (setenv "PBR_VERSION" "3.0.1")))))) + (native-inputs + `(("python-pbr" ,python-pbr) + ("python-pytest" ,python-pytest) + ("python-pytest-catchlog" ,python-pytest-catchlog) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock) + ("python-pytest-runner" ,python-pytest-runner) + ("python-pytest-xdist" ,python-pytest-xdist))) + (propagated-inputs + `(("python-inflection" ,python-inflection) + ("python-tinycss" ,python-tinycss))) + (home-page "https://github.com/blambright/qstylizer") + (synopsis "Qt stylesheet generation utility for PyQt/PySide") + (description "@code{qstylizer} is a Python package designed to help with +the construction of PyQt/PySide stylesheets.") + (license license:expat))) + (define-public python-click-threading (package (name "python-click-threading") @@ -11251,13 +11880,13 @@ output, progress bar display, and pipes.") (define-public python-rply (package (name "python-rply") - (version "0.7.5") + (version "0.7.8") (source (origin (method url-fetch) (uri (pypi-uri "rply" version)) (sha256 (base32 - "0lv428895zxsz43968qx0q9bimwqnfykndz4dpjbq515w2gvzhjh")))) + "1j81nddvnb145x4p81bnfpyai6g26i2dc1633ycsk025bb18m01a")))) (build-system python-build-system) (propagated-inputs `(("python-appdirs" ,python-appdirs))) @@ -11311,6 +11940,25 @@ its Lisp code into the Python Abstract Syntax Tree, you have the whole world of Python at your fingertips, in Lisp form.") (license license:expat))) +(define-public python-hissp + (package + (name "python-hissp") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hissp" version)) + (sha256 + (base32 + "0yns7f0q699zn2ziagyas2nkndl7mp1hhssv9x9mpl7jxj2p5myw")))) + (build-system python-build-system) + (home-page "https://github.com/gilch/hissp") + (synopsis "It's Python with a Lissp") + (description "Hissp is a modular Lisp implementation that compiles to a +functional subset of Python—Syntactic macro metaprogramming with full access +to the Python ecosystem.") + (license license:asl2.0))) + (define-public python2-functools32 (package (name "python2-functools32") @@ -12405,6 +13053,119 @@ ISO 8859, etc.).") (define-public python2-translitcodec (package-with-python2 python-translitcodec)) +(define-public python-anyqt + (package + (name "python-anyqt") + (version "0.0.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "AnyQt" version)) + (sha256 + (base32 "0gl2czirzjvhbq963i2awxp8kwbc1grh67lpcwfipyn9w3kdwdj4")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ;there are no tests + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-files + ;; Delete files related to other operating systems. + (lambda _ + (delete-file "AnyQt/QtMacExtras.py") + (delete-file "AnyQt/QtWinExtras.py") + #t))))) + (home-page "https://github.com/ales-erjavec/anyqt") + (synopsis "PyQt4/PyQt5 compatibility layer") + (description "AnyQt is a PyQt4/PyQt5 compatibility layer.") + (license license:gpl3))) + +(define-public python-pyqtgraph + (package + (name "python-pyqtgraph") + (version "0.12.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyqtgraph" version)) + (sha256 + (base32 "0kc7ncv0lr3spni29i9g8nszyr4xinswqi2zzs6v8kqqi593pvyj")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'set-home-and-qpa + (lambda _ + (setenv "HOME" "/tmp") + (setenv "QT_QPA_PLATFORM" "offscreen") + #t)) + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv" "-k" + ;; These tests try to download online data. + (string-append "not test_PolyLineROI" + " and not test_getArrayRegion_axisorder" + " and not test_getArrayRegion" + " and not test_PlotCurveItem" + " and not test_NonUniformImage_colormap" + " and not test_NonUniformImage_lut" + " and not test_ImageItem_axisorder" + " and not test_ImageItem"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-xdist" ,python-pytest-xdist))) + (inputs + `(("qtbase" ,qtbase))) + (propagated-inputs + `(("python-h5py" ,python-h5py) + ("python-numpy" ,python-numpy) + ("python-pyopengl" ,python-pyopengl) + ("python-scipy" ,python-scipy) + ("python-pyqt" ,python-pyqt))) + (home-page "http://www.pyqtgraph.org") + (synopsis "Scientific graphics and GUI library for Python") + (description + "PyQtGraph is a Pure-python graphics library for PyQt5, PyQt6, PySide2 +and PySide6. It is intended for use in mathematics, scientific or engineering +applications.") + (license license:expat))) + +(define-public python-qasync + (package + (name "python-qasync") + (version "0.15.0") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/CabbageDevelopment/qasync/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0va9h6v102d7mxz608banjc0l0v02dq3ywhr5i4nqaxx3qkazc2l")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + (add-before 'check 'set-qpa + (lambda _ + (setenv "QT_QPA_PLATFORM" "offscreen") + #t))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-pyqt" ,python-pyqt))) + (home-page "https://github.com/CabbageDevelopment/qasync") + (synopsis "Implementation of the PEP 3156 Event-Loop with Qt") + (description + "@code{qasync} allows coroutines to be used in PyQt/PySide applications +by providing an implementation of the PEP 3156 event-loop.") + (license license:bsd-2))) + (define-public python-editor (package (name "python-editor") @@ -13997,13 +14758,13 @@ until the object is actually required, and caches the result of said call.") (define-public python-dnspython (package (name "python-dnspython") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (pypi-uri "dnspython" version ".zip")) (sha256 (base32 - "1dyip5ygqqhrgcaiy7qzjpndl9xciip186paxqwkm726fj9z0jh4")))) + "1m0xvyby8baaxp6pfm0fgq8d2pq5dd8qm8bzfbrs009jaw5pza74")))) (build-system python-build-system) (native-inputs `(("unzip" ,unzip))) (arguments '(#:tests? #f)) ; XXX: requires internet access @@ -14364,6 +15125,80 @@ etc.") (package/inherit base (name "ptpython2")))) +(define-public python-easyprocess + (package + (name "python-easyprocess") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "EasyProcess" version)) + (sha256 + (base32 "115rzzr0hx4af4m6krf7dxn8851n4l8jfxahjzjc2r0zq2m8v57v")))) + (build-system python-build-system) + (arguments + ;; Tests require pyvirtualdisplay, which requires this package. + `(#:tests? #f)) + (home-page "https://github.com/ponty/easyprocess") + (synopsis "Python subprocess interface") + (description + "@code{easyprocess} is an easy to use Python subprocess interface.") + (license license:bsd-3))) + +(define-public python-entrypoint2 + (package + (name "python-entrypoint2") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "entrypoint2" version)) + (sha256 + (base32 "1qyxq54r2fbh09ab5sffbxajy8arbk6czxz5lq3ccr9qrypw6w27")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest")) + (native-inputs + `(("python-easyprocess" ,python-easyprocess) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/ponty/entrypoint2") + (synopsis "Command-line interface for Python modules") + (description + "@code{entrypoint2} is an easy to use command-line interface for Python +modules based on @code{argparse}. It translates function signature and +documentation to argparse configuration.") + (license license:bsd-3))) + +(define-public python-pyvirtualdisplay + (package + (name "python-pyvirtualdisplay") + (version "2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyVirtualDisplay" version)) + (sha256 + (base32 "1z2fzgiw3xv3m1d9ppn53g07zhnpj05addiz56sm6ircxibnjk4x")))) + (build-system python-build-system) + (arguments + ;; Tests fail with: + ;; FileNotFoundError: [Errno 2] No such file or directory: 'Xvnc'. + `(#:tests? #f)) + (native-inputs + `(("python-entrypoint2" ,python-entrypoint2) + ("python-psutil" ,python-psutil) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-easyprocess" ,python-easyprocess) + ("python-pillow" ,python-pillow))) + (home-page "https://github.com/ponty/pyvirtualdisplay") + (synopsis "Python wrapper for Xvfb, Xephyr and Xvnc") + (description + "@code{pyvirtualdisplay} is a Python wrapper for Xvfb, Xephyr and Xvnc.") + (license license:bsd-3))) + (define-public python-stem (package (name "python-stem") @@ -14539,18 +15374,20 @@ extracting firmware images") (define-public python-nltk (package (name "python-nltk") - (version "3.2.1") + (version "3.6.2") (source (origin (method url-fetch) - (uri (pypi-uri "nltk" version)) + (uri (pypi-uri "nltk" version ".zip")) (sha256 (base32 - "0skxbhnymwlspjkzga0f7x1hg3y50fwpfghs8g8k7fh6f4nknlym")))) + "1sq32lwgij9h8rsksymnxxr7bqfw3vgx5ijw4azbj6k2xnmmdmap")))) (build-system python-build-system) (arguments '(;; The tests require some extra resources to be downloaded. ;; TODO Try packaging these resources. #:tests? #f)) + (native-inputs + `(("unzip" ,unzip))) (home-page "http://nltk.org/") (synopsis "Natural Language Toolkit") (description "It provides interfaces to over 50 corpora and lexical @@ -14559,6 +15396,19 @@ for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for natural language processing libraries.") (license license:asl2.0))) +;; Versions >=3.5 breaks backward-compatibility, +;; so we keep version 3.4.x around for a while. +(define-public python-nltk-3.4 + (package + (inherit python-nltk) + (version "3.4.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nltk" version ".zip")) + (sha256 + (base32 "153x2clrnigs74jdgnn3qmljdjj4gprmvpdvh49i18ls4m8mbm5y")))))) + (define-public python2-nltk (package-with-python2 python-nltk)) @@ -14730,13 +15580,13 @@ command @command{natsort} that exposes this functionality in the command line.") (define-public glances (package (name "glances") - (version "3.1.6") + (version "3.1.7") (source (origin (method url-fetch) (uri (pypi-uri "Glances" version)) (sha256 - (base32 "11xbm8jgcxha191ly7q76nab1ilabiz14mqf6i3y6aw5xvgg017c")) + (base32 "020vb38qrb0m3sdr7xjr43cmcfxpnyg4hmb97wgxsa9zvwsjwa5x")) (modules '((guix build utils))) (snippet '(begin @@ -21179,14 +22029,14 @@ one-off scripts.") (define-public python-cached-property (package (name "python-cached-property") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (pypi-uri "cached-property" version)) (sha256 (base32 - "010m1bl380l2r3vwq24r5v14l6gwvgm9v0mqqjkjss552jgsa5wj")))) + "0c51i6yzg6dlq6zhk4c6nv33mg8gv05kkan36k9b5jzf71c7b9cz")))) (build-system python-build-system) (arguments `(#:phases @@ -23966,13 +24816,13 @@ applications with variable CPU loads).") (define-public python-djvulibre (package (name "python-djvulibre") - (version "0.8.5") + (version "0.8.6") (source (origin (method url-fetch) (uri (pypi-uri "python-djvulibre" version)) (sha256 - (base32 "1c0lvpg7j2525cv52s3q5sg7hfnakkb8rmghg0jc02gshsxmrj4f")))) + (base32 "089smpq29ll0z37lnq26r2f72d31i33xm9fw9pc6hlcsm6nbjbiv")))) (build-system python-build-system) (native-inputs `(("ghostscript" ,ghostscript) @@ -24192,6 +25042,47 @@ query Watchman to discover file changes.") environment.") (license license:expat))) +(define-public python-qtsass + (package + (name "python-qtsass") + (version "0.3.0") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/spyder-ide/qtsass/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09s04aa14d8jqbh71clrb5y7vcmkxlp94mwmvzrkxahry3bk03cb")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + ;; Tests need to read and write files. + (add-before 'check 'make-git-checkout-writable + (lambda _ + (for-each make-file-writable (find-files ".")) + #t))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-libsass" ,python-libsass))) + (home-page "https://github.com/spyder-ide/qtsass") + (synopsis "Compile SCSS files to valid Qt stylesheets") + (description + "Besides being used in web development, CSS is also the way to stylize +Qt-based desktop applications. However, Qt's CSS has a few variations that +prevent the direct use of SASS compiler. + +The purpose of this tool is to fill the gap between SASS and Qt-CSS by +handling those variations.") + (license license:expat))) + (define-public python-qdarkstyle (package (name "python-qdarkstyle") |