diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 241 |
1 files changed, 122 insertions, 119 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index aad329400f..6e18fc3f4d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -68,6 +68,7 @@ #:use-module (gnu packages java) #:use-module (gnu packages javascript) #:use-module (gnu packages libffi) + #:use-module (gnu packages linux) #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) @@ -203,7 +204,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.1.3") + (version "4.2.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -211,7 +212,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "1mpy4sar1amx5ai9rqr9s0nw8p65iqfrqbm5n9h402b17hrmpzqm")))) + "123l17sv3smh5cz0vrjxjj8jf81bb860kah6iww9bl3skdqvgsiq")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -237,6 +238,16 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (("uname") uname-bin)) (substitute* "src/unix/sys-std.c" (("rm -Rf ") (string-append rm-bin " -Rf ")))))) + (add-after 'unpack 'patch-tests + (lambda _ + ;; This is needed because R is run during the check phase and + ;; /bin/sh doesn't exist in the build container. + (substitute* "src/unix/sys-unix.c" + (("\"/bin/sh\"") + (string-append "\"" (which "sh") "\""))) + ;; This test fails because line numbers are off by two. + (substitute* "tests/reg-packages.R" + (("8 <= print" m) (string-append "## " m))))) (add-after 'unpack 'build-reproducibly (lambda _ ;; The documentation contains time stamps to demonstrate @@ -315,6 +326,9 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ (setenv "TZDIR" (search-input-directory inputs "share/zoneinfo")))) + (add-before 'check 'set-home + ;; Some tests require that HOME be set. + (lambda _ (setenv "HOME" "/tmp"))) (add-after 'build 'make-info (lambda _ (invoke "make" "info"))) (add-after 'build 'install-info @@ -493,14 +507,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-56") + (version "7.3-57") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "11gv5965ba6xr4qsp1945vd39rp0sggzpa103rwj1c5hw0abvnlv")))) + "13asg609szqq8d1a4ybr508qcanr9gvqd439vfras6mw0l0qi2xx")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -912,13 +926,13 @@ additions (tooltips, bipartite diagram type).") (define-public r-dichromat (package (name "r-dichromat") - (version "2.0-0") + (version "2.0-0.1") (source (origin (method url-fetch) (uri (cran-uri "dichromat" version)) (sha256 - (base32 "1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i")))) + (base32 "10b0avdar3d1y8x2ya3x5kqxqg0z0mq872hdzvc1nn4amplph1d1")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/dichromat") (synopsis "Color schemes for dichromats") @@ -1215,13 +1229,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.3.5") + (version "3.3.6") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "1si46bf9p09qzs208hqffwcb40305p361whmwhc1pwrsmx7jjxdh")))) + (base32 "1aa377jdfajj8ld2fh159y8havlibsr4pjisf6mkzk8g5awlxjxz")))) (build-system r-build-system) (propagated-inputs (list r-digest @@ -1537,13 +1551,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.38") + (version "1.39") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "1bg7nmd2bvfd2gscp4nly4a2c05bpgzq536bmmf93vaf860yhf6i")))) + "0wmcj6xv0bcqzmp5vm8s574rfx366rkgm03lgyppk9ywxgnna6n9")))) (build-system r-build-system) (propagated-inputs (list r-evaluate r-highr r-stringr r-xfun r-yaml)) @@ -1680,13 +1694,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.1.3") + (version "3.1.4") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "0c7whxl6zwapqzdplwplvhs73w9blb419h2mdl21pwmqjhzjaq68")))) + "02cwdix7v8zsvcmcl3h5hfi66w1ln9qi60risf5nl62f3c1yqzm4")))) (build-system r-build-system) (propagated-inputs (list r-brio @@ -1760,14 +1774,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.1.6") + (version "3.1.7") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "14l2i6ri3v5y0h8g0ahc4kz0pdqsp5yabxk2w8wavss6y44xjcsv")))) + "0wn8j7slfqrdl126g536sg1xkrvjd9rlsk0bjqk3b03nyj8hi9g1")))) (build-system r-build-system) (propagated-inputs (list r-ellipsis @@ -1790,13 +1804,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.8") + (version "1.0.9") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0xb04ckp29pva1h2rfahqhmk9gcwp2dbbx3av8ip40v7dnha6siv")))) + "0sxl9yzccsdhlrrwj26lmh9frsijxyfaf7csv8mf7d0q4qqzgqg2")))) (build-system r-build-system) (propagated-inputs (list r-generics @@ -1929,13 +1943,13 @@ and density estimation.") (define-public r-chron (package (name "r-chron") - (version "2.3-56") + (version "2.3-57") (source (origin (method url-fetch) (uri (cran-uri "chron" version)) (sha256 (base32 - "0p9zz96jfyf139924hdwkzhr8knkjvx6547ac53rknm3a6wwngl6")))) + "0cn2367mw27qf2nj8d1i182ns3nlzlkgix6c18mc3byihimdhicn")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/chron") (synopsis "Chronological R objects which can handle dates and times") @@ -2019,9 +2033,6 @@ building design matrices.") ;; and is covered by the PSFL. (license (list license:bsd-2 license:psfl)))) -(define-public python2-patsy - (package-with-python2 python-patsy)) - (define-public python-statsmodels (package (name "python-statsmodels") @@ -2068,27 +2079,6 @@ statistical computations including descriptive statistics and estimation and inference for statistical models.") (license license:bsd-3))) -(define-public python2-statsmodels - (let ((stats (package-with-python2 python-statsmodels))) - (package/inherit stats - ;; Version 0.11.1 and later does not work with Python 2. It may build - ;; fine but loading modules fails. - (version "0.9.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "statsmodels" version)) - (sha256 - (base32 - "0fxs8a7sp4d7jvqlm36yi45i2d28kjfvraf9q8i9jr1chhxgjqb4")))) - (propagated-inputs - `(("python2-pytz" ,python2-pytz) - ("python2-numpy" ,python2-numpy) - ("python2-scipy" ,python2-scipy) - ("python2-pandas" ,python2-pandas) - ("python2-patsy" ,python2-patsy) - ("python2-matplotlib" ,python2-matplotlib)))))) - (define-public r-coda (package (name "r-coda") @@ -2113,14 +2103,14 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-18") + (version "1.7-19") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "09f5kh2mwygqpnvf53k0r54k0cvaafxm9x4nm819gwv05k2g9dpc")))) + "1vv5y6badksnpjb3bcphhjdzzh6i2grmwnsalcf2cfpr3y412lf8")))) (build-system r-build-system) (propagated-inputs (list r-mass r-pixmap r-sp)) @@ -2245,17 +2235,19 @@ R version.") (define-public r-checkmate (package (name "r-checkmate") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "checkmate" version)) (sha256 (base32 - "193gkifr9spp0x0rwnjq1spdhjkfkh4mv27iklskcj604075phhd")))) + "1ii11lypfz8qwswaiagaxnfq6wqkg3cq4j7k9q40sdd0cd8xv15p")))) (build-system r-build-system) (propagated-inputs (list r-backports)) + (native-inputs + (list r-knitr)) (home-page "https://github.com/mllg/checkmate") (synopsis "Fast and versatile argument checks") (description @@ -2406,16 +2398,17 @@ tables, autolinks and strikethrough text.") (define-public r-roxygen2 (package (name "r-roxygen2") - (version "7.1.2") + (version "7.2.0") (source (origin (method url-fetch) (uri (cran-uri "roxygen2" version)) (sha256 (base32 - "1zf55wywlpy7mk7zfyi3s9fhhg1m9kvafzj46iqw5cbvnlg3ssdk")))) + "12s436jn7aagjpc2lnlrhzwqgsdl8lbbwhkddih6rnxrczawzgrf")))) (build-system r-build-system) (propagated-inputs (list r-brew + r-cli r-commonmark r-cpp11 r-desc @@ -2427,6 +2420,7 @@ tables, autolinks and strikethrough text.") r-rlang r-stringi r-stringr + r-withr r-xml2)) (native-inputs (list r-knitr)) @@ -2440,14 +2434,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "2.0.0") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "0jsnzxa72bfxsdai25xyklmmrraaf9yv2nmqmf0bgzrkbzkgsa7b")))) + "1i7il5kkr1yp2xk8zw7max4llga4hfz0cx9sx0v2xnb9pg4ksbc6")))) (build-system r-build-system) (arguments (list @@ -2482,13 +2476,13 @@ integers.") (define-public r-httr (package (name "r-httr") - (version "1.4.2") + (version "1.4.3") (source (origin (method url-fetch) (uri (cran-uri "httr" version)) (sha256 (base32 - "1y8y1g1dkgv9jafrk1kj6pzxpw95c0rr9lplblfq2byrs1pfsas6")))) + "0skwi501rzndywn81704d68n1l6lrvqilf91q08cjfhpjvx171ls")))) (build-system r-build-system) (propagated-inputs (list r-curl r-jsonlite r-openssl r-mime r-r6)) @@ -2721,13 +2715,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.11.0.0.0") + (version "0.11.1.1.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "13blvrlbw8194a96v38hnllnwvyhdw5x9m0dnkyw3xsi3jrhcxin")))) + "15s8lx3s0g9npwmys509ahrqc786lg2cid21civ3wm219i4gq2zb")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2813,13 +2807,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.13") + (version "2.14") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "0i07p3dxxv2s2a4xmyhc3qxmwg86vakniq5jjjclmcq2sahvw5vj")))) + (base32 "081j1hpxcwadn606ch5lq279s66c1b0f0mjvap7yimnrljpigv79")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2928,13 +2922,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.12") + (version "2.2.14") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "12ka9cp591sc3hn5r6z4skbjzm3nfq338wlpjdmw6rz26mmr2c9s")))) + "0z307d7rx7blh2apc9dbw9vgad2ldbf9vbdjhmwlj0mwbs3nmqra")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -2958,15 +2952,13 @@ engine (version 3.8.8.2) is included.") (define-public r-rcurl (package (name "r-rcurl") - (version "1.95-0.1.2") + (version "1.98-1.6") (source (origin (method url-fetch) - (uri (string-append "https://www.bioconductor.org/packages/" - "release/extra/src/" - "contrib/RCurl_" version ".tar.gz")) + (uri (cran-uri "RCurl" version)) (sha256 (base32 - "0l7qi45jxlf898n0jazabnam1yyczvqfdknd00bdirhhiplpd1sc")))) + "18nif4phr5vfhri07mnchiym0qfm31ak9nxvb2v9ac84mij6idbc")))) (properties `((upstream-name . "RCurl"))) (build-system r-build-system) (arguments @@ -2979,10 +2971,11 @@ engine (version 3.8.8.2) is included.") (string-append "\ certs = Sys.getenv(\"CURL_CA_BUNDLE\") if (certs != \"\") { .opts = merge.list(.opts, list(cainfo=certs)) } -" m))) - #t))))) +" m)))))))) + (native-inputs + (list libxml2)) (inputs - `(("libcurl" ,curl))) + (list curl)) (propagated-inputs (list r-bitops)) (home-page "http://www.omegahat.net/RCurl") @@ -3122,14 +3115,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "1.4-1") + (version "1.5-0") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "1aagn2v48ncwxx79h601nlalbgc40fc81nqaw6nbncqkqm0zaxi3")))) + "1d8np6psnmqyq3bxxd17ivp6pq6p8rx5hal4bgz8ckc4d1i9lp6n")))) (build-system r-build-system) (propagated-inputs (list r-mass)) (home-page "https://cran.r-project.org/web/packages/segmented") @@ -3565,13 +3558,13 @@ using the multicore functionality of the parallel package.") "datatables-extensions/Select")))) (package (name "r-dt") - (version "0.22") + (version "0.23") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "16ah0h60ygvj49cs6cxxhdxx68cs6v6m35w5r1j5h8nxz171q61z")) + "0w6wgiwa3zgldp175a3q7zfw853xqc7mfj34n6hja48ln7yf42in")) (modules '((guix build utils))) (snippet '(for-each delete-file @@ -3716,13 +3709,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.1-3") + (version "4.1-4") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "0nij8v44b5dvp1vc843sfkl9ds83n6g687m2p37q1rdn82m3bg34")))) + (base32 "1y80a3b5s24ywhlil3r7b3a0vs9j59d7jkxrqa8zz09x1c5ggc7n")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -3817,14 +3810,14 @@ the way current RNG settings can be changed.") (define-public r-rtsne (package (name "r-rtsne") - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (cran-uri "Rtsne" version)) (sha256 (base32 - "0v17vxizrs1msay24xl2bckfajr2c82wpqj07lyssbrq197nwdsn")))) + "1mgviwrqwapn8w7rq0sjxca5vi7ylgmm876ijwp22a3chbf5m82j")))) (properties `((upstream-name . "Rtsne"))) (build-system r-build-system) (propagated-inputs @@ -3905,17 +3898,19 @@ message passing.") (define-public r-bigmemory (package (name "r-bigmemory") - (version "4.5.36") + (version "4.6.1") (source (origin (method url-fetch) (uri (cran-uri "bigmemory" version)) (sha256 (base32 - "03pg8mxdc7q0249visjmc8bc3xmwxsfg3i2n6higicj4cfz7zihq")))) + "0hainqkm7cs8gjm42vkpdrr0284smsbwdfackp34yv7dhxy1avmm")))) (build-system r-build-system) (propagated-inputs - (list r-bh r-rcpp r-bigmemory-sri)) + (list r-bh r-bigmemory-sri r-rcpp r-uuid)) + (inputs + (list `(,util-linux "lib"))) ;for -luuid (home-page "http://www.bigmemory.org") (synopsis "Manage large matrices with shared memory or memory-mapped files") (description "This package provides methods to create, store, access, and @@ -4075,13 +4070,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.61.0") + (version "0.62.0") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "16pxsba5i51ifbbgvxln2w6nigbwd3290b2ckgzn5bmib7nc1lyv")))) + "1jjfsi5vzx6js7phlnd3v64fd05fg0jyz8iq5pivy36jdmmh3ql5")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (arguments @@ -4466,13 +4461,13 @@ package instead.") (define-public r-hmisc (package (name "r-hmisc") - (version "4.6-0") + (version "4.7-0") (source (origin (method url-fetch) (uri (cran-uri "Hmisc" version)) (sha256 - (base32 "1bd1c8sichyijprfpnqj5g72nmgs9jvi0zyw8v4nsg1kn83fj71c")))) + (base32 "1gc71wg6f17x6nriphs1kk39ix7lpqk32clk1qshqy8wl6f2vv19")))) (properties `((upstream-name . "Hmisc"))) (build-system r-build-system) (native-inputs @@ -4592,14 +4587,14 @@ Zurich, including many that are related to graphics.") (define-public r-gtools (package (name "r-gtools") - (version "3.9.2") + (version "3.9.2.1") (source (origin (method url-fetch) (uri (cran-uri "gtools" version)) (sha256 (base32 - "0lx97yafrms2mjym8rhcq5586z7s1iqgy8qfm4px3xl1yn5qkc83")))) + "0pxg0ang9q26hlwgf53pp1hq6rlarq5rnrrr9dl14f5kgfnynpzc")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/gtools") (synopsis "Various R programming tools") @@ -4614,14 +4609,14 @@ tests for whether a value is missing, empty or contains only @code{NA} and (define-public r-gdata (package (name "r-gdata") - (version "2.18.0") + (version "2.18.0.1") (source (origin (method url-fetch) (uri (cran-uri "gdata" version)) (sha256 (base32 - "0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b")))) + "1n9jw136kk5ld27qvny7cx2s8l34jdgmzlx40x62mmcqjddksbsy")))) (build-system r-build-system) (inputs (list perl)) @@ -4654,14 +4649,14 @@ including: (define-public r-gplots (package (name "r-gplots") - (version "3.1.1") + (version "3.1.3") (source (origin (method url-fetch) (uri (cran-uri "gplots" version)) (sha256 (base32 - "0f8khaymz383w2ksnk80d4kpnvgmdk37pbycpsnl2vabaz11kbpr")))) + "05k7a8x62qs5g6mps62vb3mwjdnfjzvjb20yws3x0r2j42g3p1cz")))) (build-system r-build-system) (propagated-inputs (list r-catools r-gtools r-kernsmooth)) @@ -4997,14 +4992,14 @@ mixture models.") (define-public r-lars (package (name "r-lars") - (version "1.2") + (version "1.3") (source (origin (method url-fetch) (uri (cran-uri "lars" version)) (sha256 (base32 - "0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34")))) + "17al1g0pvfz9frs2kxicqr8dyp7ciz3x87yx2l4lqd53ls6nm7n6")))) (build-system r-build-system) (inputs (list gfortran)) @@ -5044,14 +5039,14 @@ perform @dfn{independent component analysis} (ICA) and projection pursuit.") (define-public r-randomforest (package (name "r-randomforest") - (version "4.7-1") + (version "4.7-1.1") (source (origin (method url-fetch) (uri (cran-uri "randomForest" version)) (sha256 (base32 - "04q6gb917md4yw837cf9vlx1q8ljl06jw7yhykzb6nl47w55jnkq")))) + "1micz9794j7xmj755ln2692rzip8azndflxgdg6xn3j86issi7pm")))) (properties `((upstream-name . "randomForest"))) (build-system r-build-system) (home-page "https://www.stat.berkeley.edu/~breiman/RandomForests/") @@ -5130,14 +5125,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "5.4.9") + (version "5.4.10") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "0s4mva0n04f3pl41msmzhlh7pnk0zbmf06n826smxkw6mz327wb5")))) + "0wh6nsbma4b0wsmqm2ynbznl2wlwdly4vg583f6z0zd1qkrvn6ra")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -5222,14 +5217,14 @@ regression methodology including model selections and multivariate statistics.") (define-public r-pcapp (package (name "r-pcapp") - (version "1.9-74") + (version "2.0-1") (source (origin (method url-fetch) (uri (cran-uri "pcaPP" version)) (sha256 (base32 - "1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh")))) + "06hjhr0dzdp5yhd421q9scbv6w6bchicbn2bl7am490ncgrf544n")))) (properties `((upstream-name . "pcaPP"))) (build-system r-build-system) (propagated-inputs @@ -5244,14 +5239,14 @@ analysis} (PCA) by projection pursuit.") (define-public r-rrcov (package (name "r-rrcov") - (version "1.6-2") + (version "1.7-0") (source (origin (method url-fetch) (uri (cran-uri "rrcov" version)) (sha256 (base32 - "18x8y2b9n2plpn4086nkjk9c27p7gb78kbrv5pj9r8fb0idl5rn5")))) + "1z98j9973hl19b70dcwfcf55ifxr2a9v53daaq2sagynh95aik6b")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-mvtnorm r-pcapp r-robustbase)) @@ -5507,18 +5502,24 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.88") + (version "5.93") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "0grsha18zkiil0qnxc1d7kc3w26i6aaa4av9n9ahdm8yf59yah0r")))) + (base32 "0fg5x6sa8mz2hh9nak0wajh4l6h03x216462vs94rgq0ln24kafl")))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs - (list gfortran)) + (list gfortran + r-r-rsp)) ;for vignettes (propagated-inputs - (list r-matrix r-matrixmodels r-sparsem)) + (list r-mass r-matrix r-matrixmodels r-sparsem r-survival)) (home-page "https://www.r-project.org") (synopsis "Quantile regression") (description @@ -5532,14 +5533,14 @@ expected shortfall risk are also included.") (define-public r-nloptr (package (name "r-nloptr") - (version "2.0.0") + (version "2.0.3") (source (origin (method url-fetch) (uri (cran-uri "nloptr" version)) (sha256 (base32 - "16k124ll14p3ygny6i1zd7yza83bv2sk87x922n1bfn9rx4k3jk5")))) + "1mqnjswm0dl6vqc8b2s5k3n1mhanaha3l33vh68dh6zx8q9aq9kv")))) (build-system r-build-system) (native-inputs (list r-knitr ; for building vignettes @@ -5642,13 +5643,13 @@ Companion to Applied Regression, Third Edition, Sage.") (define-public r-car (package (name "r-car") - (version "3.0-12") + (version "3.0-13") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 - (base32 "00kk8l71508f73kyn21is1mx6kjbrzdq3ls94c5ajhiqmvpsd6dq")))) + (base32 "1ss7kvi5hf9s4b6i7y06zl4iip1w1h8ff4zzf529wk18h3dfhnnk")))) (build-system r-build-system) (propagated-inputs (list r-abind @@ -5792,14 +5793,14 @@ multivariate case.") (define-public r-tclust (package (name "r-tclust") - (version "1.4-2") + (version "1.5-1") (source (origin (method url-fetch) (uri (cran-uri "tclust" version)) (sha256 (base32 - "1nb5iky4kc832627jf28lzj19wrvgwg5da6fyl3kyf0npmyx1p4m")))) + "09zk38gih67a8lk72k46mfgv21jpnxh2nzrxc5ypdc2bfwq8nckk")))) (build-system r-build-system) ;; These are all suggested packages, not build dependencies. (propagated-inputs @@ -6454,14 +6455,14 @@ mediation and estimating power.") (define-public r-clubsandwich (package (name "r-clubsandwich") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "clubSandwich" version)) (sha256 (base32 - "1ifnc2rg5agf7lpilmm27iq0af7ghfhkvwykajhvykgf6h4clvhf")))) + "0mll8q61vnb980dck8ihxcy89z8m7f8i16mqdvr4l2ljywkhpzvd")))) (properties `((upstream-name . "clubSandwich"))) (build-system r-build-system) (propagated-inputs @@ -6603,14 +6604,14 @@ or eta squared effect size.") (define-public r-logspline (package (name "r-logspline") - (version "2.1.16") + (version "2.1.17") (source (origin (method url-fetch) (uri (cran-uri "logspline" version)) (sha256 (base32 - "12hkdi77vkic05p2vhap025xdcg1n53ywm239v18713pihdlj63l")))) + "05c8l22zcvb086909h9vw7icphww703vkcxp2h881y4n1232pdq3")))) (properties `((upstream-name . "logspline"))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -6778,14 +6779,14 @@ Michael Lim & Trevor Hastie (2015)") (define-public r-datasaurus (package (name "r-datasaurus") - (version "0.1.4") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "datasauRus" version)) (sha256 (base32 - "1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl")))) + "0vgylf3bab0xcfg08xwvfq9yhxy6w0fxi7wp4kkxfyjb0pw15qxk")))) (properties `((upstream-name . "datasauRus"))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -6810,13 +6811,13 @@ Annealing\" @url{doi:10.1145/3025453.3025912}.") (define-public r-lmom (package (name "r-lmom") - (version "2.8") + (version "2.9") (source (origin (method url-fetch) (uri (cran-uri "lmom" version)) (sha256 - (base32 "1lnj41gynaar5isyijg5nbll64qdxa12dnqvz7lxhaclqcjskqna")))) + (base32 "145va4dhl767mywk36xcmqilm21sfkqhcqi0s07qgq3k39sn4gin")))) (properties `((upstream-name . "lmom"))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -6894,13 +6895,13 @@ Calculates confidence intervals for the difference in proportion.") (define-public r-desctools (package (name "r-desctools") - (version "0.99.44") + (version "0.99.45") (source (origin (method url-fetch) (uri (cran-uri "DescTools" version)) (sha256 - (base32 "04wp3sp6sahgq167465y38y13h1ia5a4zqazysacpjxd1if0578j")))) + (base32 "01gbmikpzjmymvb7p76k7wqvfvwznl6v0qa78jy7bi6fzmbp1zld")))) (properties `((upstream-name . "DescTools"))) (build-system r-build-system) (propagated-inputs @@ -6910,9 +6911,11 @@ Calculates confidence intervals for the difference in proportion.") r-exact r-expm r-gld + r-httr r-mass r-mvtnorm r-rcpp + r-readxl r-rstudioapi)) (native-inputs (list gfortran)) (home-page "https://andrisignorell.github.io/DescTools/") @@ -7016,13 +7019,13 @@ the presence of variance components/nonparametric terms for models fit with (define-public r-binom (package (name "r-binom") - (version "1.1-1") + (version "1.1-1.1") (source (origin (method url-fetch) (uri (cran-uri "binom" version)) (sha256 - (base32 "0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c")))) + (base32 "1yxyhsd0savwirlmgnq6973slfakqyfvjm0zz60cmc9v490my8gf")))) (properties `((upstream-name . "binom"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=binom") |