diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 217 |
1 files changed, 109 insertions, 108 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 8d4f84208c..7ff56d7355 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -164,7 +164,7 @@ be output in text, PostScript, PDF or HTML.") (base32 "0aa2w4g5057vn1qjp954s2kwxfmy1h7p5yn56fyi7sz9nmaq69gr")))) (build-system gnu-build-system) - (home-page "http://mcmc-jags.sourceforge.net/") + (home-page "https://mcmc-jags.sourceforge.net/") (native-inputs (list gfortran lapack)) (synopsis "Gibbs sampler") @@ -508,17 +508,17 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-58.1") + (version "7.3-58.2") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "080l4gqkaw9r4s7b0q9hda489rn24p4ma5xf4g8405qkzgif817p")))) + "0jvqvlmb1fjqhcnix1blj7hjiyxy7m1rfjdv3sr2nhyad19rvh5m")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) - (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") + (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Support functions and datasets for Venables and Ripley's MASS") (description "This package provides functions and datasets for the book \"Modern @@ -529,18 +529,18 @@ Applied Statistics with S\" (4th edition, 2002) by Venables and Ripley.") (define-public r-class (package (name "r-class") - (version "7.3-20") + (version "7.3-21") (source (origin (method url-fetch) (uri (cran-uri "class" version)) (sha256 (base32 - "10slys2jny4k2j8l8k97hwrwd6ryzajfnzywqpq2yc9bqxmh8nz6")))) + "1pydmsy4glvdbvm8ci76br69qhlfgjq8irwm4jk63nnjli54068c")))) (build-system r-build-system) (propagated-inputs (list r-mass)) - (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") + (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "R functions for classification") (description "This package provides various functions for classification, including @@ -573,14 +573,14 @@ Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".") (define-public r-codetools (package (name "r-codetools") - (version "0.2-18") + (version "0.2-19") (source (origin (method url-fetch) (uri (cran-uri "codetools" version)) (sha256 (base32 - "0a2c115glq8jxixwfigrpvjabhxchn9r4mc40y41dg9dg6wsd7hs")))) + "1ardg28x2cvilkgsj6bdvvp5snsy3rj7jbz9bpcdlcvzr1kybdy4")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/codetools") (synopsis "Code analysis tools for R") @@ -644,7 +644,7 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (base32 "1b87fmyjzbg854vpi03my1p25n3d0bchhwsdm2frblxppn98sf12")))) (build-system r-build-system) - (home-page "http://lattice.r-forge.r-project.org/") + (home-page "https://lattice.r-forge.r-project.org/") (synopsis "High-level data visualization system") (description "The lattice package provides a powerful and elegant high-level data @@ -668,7 +668,7 @@ also flexible enough to handle most nonstandard requirements.") (build-system r-build-system) (propagated-inputs (list r-lattice)) - (home-page "http://Matrix.R-forge.R-project.org/") + (home-page "https://Matrix.R-forge.R-project.org/") (synopsis "Sparse and dense matrix classes and methods") (description "This package provides classes and methods for dense and sparse matrices @@ -678,13 +678,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-161") + (version "3.1-162") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "0pw9kwhac6a01zcchl4xxy2rk3ghzc9kxxn6kjkh2z4iq41a1z9a")))) + (base32 "0rywlbbg76c8nx62h0fj49va1y59z1qrkfjc9ihs5bslambs4vds")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -731,7 +731,7 @@ distributions beyond the exponential family.") (base32 "1l73v6l9ma0vsg4za3c6i3d6yjj7bpdmakbmrzp7205hbkxyp6nj")))) (build-system r-build-system) - (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") + (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Feed-forward neural networks and multinomial log-linear models") (description "This package provides functions for feed-forward neural networks with a @@ -760,16 +760,16 @@ classification, regression and survival trees.") (define-public r-spatial (package (name "r-spatial") - (version "7.3-15") + (version "7.3-16") (source (origin (method url-fetch) (uri (cran-uri "spatial" version)) (sha256 (base32 - "1vwc7ingskdj1k4nq418x9yl3cw699pckb9xh5a1yp3g9plknqg5")))) + "01p42q72mb8b4fdm75723nj64r3l0d8px1l9fyklihay9jk6arg4")))) (build-system r-build-system) - (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") + (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Functions for kriging and point pattern analysis") (description "This package provides functions for kriging and point pattern @@ -780,14 +780,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.4-0") + (version "3.5-0") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "04pqkklbjpcqaq49h49j0vw18q4hi31ry3szzf84vzk5fba273m4")))) + "12nwvfa921m546acxiidpif6g1laz1h1vxbwc45ww69wdc51gcmq")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) @@ -837,7 +837,7 @@ curves, Cox models, and parametric accelerated failure time models.") (build-system r-build-system) (native-inputs (list r-knitr)) - (home-page "http://ff.r-forge.r-project.org") + (home-page "https://ff.r-forge.r-project.org") (synopsis "Class for vectors of 1-bit booleans") (description "This package provides bitmapped vectors of booleans (no @code{NA}s), @@ -860,7 +860,7 @@ binary booleans, @code{TRUE} and @code{FALSE} can be stored with 1 bit only.") (build-system r-build-system) (propagated-inputs (list r-bit)) - (home-page "http://ff.r-forge.r-project.org/") + (home-page "https://ff.r-forge.r-project.org/") (synopsis "S3 class for vectors of 64 bit integers") (description "The bit64 package provides serializable S3 atomic 64 bit (signed) @@ -958,7 +958,7 @@ effects of different types of color-blindness.") (arguments `(#:tests? #f #:configure-flags (list "--no-build-vignettes"))) - (home-page "http://dirk.eddelbuettel.com/code/digest.html") + (home-page "https://dirk.eddelbuettel.com/code/digest.html") (synopsis "Create cryptographic hash digests of R objects") (description "This package contains an implementation of a function @code{digest()} for @@ -1138,20 +1138,20 @@ designed by Cynthia Brewer as described at http://colorbrewer2.org") (define-public r-sendmailr (package (name "r-sendmailr") - (version "1.3-2") + (version "1.4-0") (source (origin (method url-fetch) (uri (cran-uri "sendmailR" version)) (sha256 (base32 - "0yyxxzhm88xipk68vzqxcckcpjgl9lajnqyxxbkp1i29jcpfgdfa")))) + "1balci88r2ci51xdh5zaqm3ss3vnry8pbkx2qngppc7n2gy932sv")))) (properties `((upstream-name . "sendmailR"))) (build-system r-build-system) (propagated-inputs (list r-base64enc)) - (home-page - "https://cran.r-project.org/web/packages/sendmailR") + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/web/packages/sendmailR") (synopsis "Send email using R") (description "This package contains a simple SMTP client which provides a portable @@ -1161,14 +1161,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.7.8") + (version "1.7.12") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "074b8wky3dhm4vcdqliwz6cqw20ah2x4dcasvnidilbfrnqii2ak")))) + "02g0464sbprrbjlacx727p9ad1s5nbxl2mnvfmm9h7q000lsrs7g")))) (build-system r-build-system) (inputs (list icu4c)) (native-inputs (list pkg-config)) @@ -1300,21 +1300,21 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.4") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "0a1hqg5b484ji4g9dy0zi06wn9w7pk6hiy5ljzc1zgj9mbhlr21j")))) + "1lkyzavgdivxmpvyqx81caizy1yrr8xp47qzgmfcn6k4inrn51jl")))) (build-system r-build-system) (native-inputs (list pkg-config)) (inputs (list cairo fontconfig freetype zlib)) (propagated-inputs - (list r-rcpp r-systemfonts)) + (list r-gfonts r-htmltools r-memoise r-rcpp r-systemfonts)) (home-page "https://cran.r-project.org/web/packages/gdtools") (synopsis "Utilities for graphical rendering") (description @@ -1325,14 +1325,14 @@ and to generate base64 encoded string from raster matrix.") (define-public r-svglite (package (name "r-svglite") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "svglite" version)) (sha256 (base32 - "16wwhfmp9agdz9azslgd8qs77fllhdp6p0m304qfh2p8qy8gah5d")))) + "0mmcipyqq4hs8fnb7301gdhl9ic4m80f1fp2x6z5vc61xrlh2w28")))) (build-system r-build-system) (inputs (list libpng zlib)) @@ -1412,13 +1412,13 @@ R/DBMS implementations.") (define-public r-bh (package (name "r-bh") - (version "1.78.0-0") + (version "1.81.0-1") (source (origin (method url-fetch) (uri (cran-uri "BH" version)) (sha256 (base32 - "1cwc1q8w9d6i81nclgi7lycsnpj0dcbxlv9rdb0f04r0d03rv7iv")))) + "0r7zjxpbm2paliplprwf9769a57clqaiskiiadiy10gissnqn77m")))) (build-system r-build-system) (home-page "https://github.com/eddelbuettel/bh") (synopsis "R package providing subset of Boost headers") @@ -1430,13 +1430,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.19") + (version "0.20") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "1k36mpb12nvcr5bv3n6591shhr38d6zpfwgj643cgprd8l0kvk39")))) + "1w7zi9cvbn3751hprfpb7waia4faqn8xa8q9jrc0nq03avldkx9m")))) (build-system r-build-system) (home-page "https://github.com/hadley/evaluate") (synopsis "Parsing and evaluation tools for R") @@ -1450,13 +1450,13 @@ adapted for other output formats, such as HTML or LaTeX.") (define-public r-formatr (package (name "r-formatr") - (version "1.13") + (version "1.14") (source (origin (method url-fetch) (uri (cran-uri "formatR" version)) (sha256 (base32 - "09z5wvbhrr2s2d196cxwzvjn0qr6pf4czrfqwdzqgqrdpwrxq1xj")))) + "0k271w4bhlj7r9igkiyfw7d7bg30s2mn4sr4alb8f9w57wnapfjf")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -1516,13 +1516,13 @@ data derived from /etc/mime.types in UNIX-type systems.") (define-public r-markdown (package (name "r-markdown") - (version "1.4") + (version "1.5") (source (origin (method url-fetch) (uri (cran-uri "markdown" version)) (sha256 (base32 - "0ziwirplzjcci2km6wln035qfd2irjl58r77kl98r8s257kavqz0")))) + "05lq5r698bk4qs2qklvri3rlbdss9w58n5y91yf3k6x5bzwh6580")))) (build-system r-build-system) ;; Skip check phase because the tests require the r-knitr package to be ;; installed. This prevents installation failures. Knitr normally @@ -1530,7 +1530,7 @@ data derived from /etc/mime.types in UNIX-type systems.") ;; package. (arguments `(#:tests? #f)) (propagated-inputs - (list r-commonmark r-mime r-xfun)) + (list r-commonmark r-xfun)) (home-page "https://github.com/rstudio/markdown") (synopsis "Markdown rendering for R") (description @@ -1542,13 +1542,13 @@ syntax that can be converted to XHTML or other formats.") (define-public r-yaml (package (name "r-yaml") - (version "2.3.6") + (version "2.3.7") (source (origin (method url-fetch) (uri (cran-uri "yaml" version)) (sha256 (base32 - "09msw6k0hsazjna53ya3c6p8alfajs7cw5k2rm62xvslcs6rvlax")))) + "1aw0cvaqw8a0d1r3cplj5kiabkcyz8fghcpi0ax8mi7rw0cv436j")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/yaml/") (synopsis "Methods to convert R data to YAML and back") @@ -1560,16 +1560,16 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.41") + (version "1.42") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "1izv1m56ngc20wx4da9mmr5ll6ah14ka8dqn9i3pd7ah70lmya81")))) + "1wrha732mhlc3la61ibm5l1b5qygswwfwjpmvq0s2kcy12hg2i4k")))) (build-system r-build-system) (propagated-inputs - (list r-evaluate r-highr r-stringr r-xfun r-yaml)) + (list r-evaluate r-highr r-xfun r-yaml)) (home-page "https://yihui.org/knitr/") (synopsis "General-purpose package for dynamic report generation in R") (description @@ -1623,13 +1623,13 @@ the execution time of R expressions.") (define-public r-pryr (package (name "r-pryr") - (version "0.1.5") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "pryr" version)) (sha256 (base32 - "02vp1y7zhv22id43j5c0gdcgn9171dyypqp8rqrlc3w5a7n565kv")))) + "013p2xxd51kr9ddx051cvn45mzgj44fm47nkchdb13l0885a7hb8")))) (build-system r-build-system) (propagated-inputs (list r-codetools r-lobstr r-rcpp r-stringr)) @@ -1811,16 +1811,17 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.10") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0aqggs0gk95b326gzqjab8i27cna1hzik3zi5l2kkr5l4zv3kdis")))) + "1msfp29lbddwdv8ibc2nkan0g1g4y4w5fws6802v6h6x95g57c4c")))) (build-system r-build-system) (propagated-inputs - (list r-generics + (list r-cli + r-generics r-glue r-lifecycle r-magrittr @@ -1847,14 +1848,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "2.2.1") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1xqdrfpl5l94cw717d90xx1hs5aswl6s38wr7qximzk8q12gdwx6")))) + "1zqz2ml4pgi93miz5flxmm7cjlh4w33hi45phyvv89i9gxp4a387")))) (build-system r-build-system) (propagated-inputs (list r-assertthat @@ -1951,13 +1952,13 @@ and density estimation.") (define-public r-chron (package (name "r-chron") - (version "2.3-58") + (version "2.3-59") (source (origin (method url-fetch) (uri (cran-uri "chron" version)) (sha256 (base32 - "1l36yy9jq6hxkg9rfbsggwhjsb33scb56di0klmw4c73rllcczq5")))) + "1xh18s4mip3xc9vn2xw6a2gpz09s3zmxw8sarn6qbrs2gjwschxr")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/chron") (synopsis "Chronological R objects which can handle dates and times") @@ -2005,7 +2006,7 @@ and fast file reading.") (build-system r-build-system) (native-inputs (list r-knitr)) ; for vignettes - (home-page "http://xtable.r-forge.r-project.org/") + (home-page "https://xtable.r-forge.r-project.org/") (synopsis "Export R tables to LaTeX or HTML") (description "This package provides tools to export R data as LaTeX and HTML tables.") @@ -2110,7 +2111,7 @@ building design matrices.") python-matplotlib)) (native-inputs (list python-cython python-nose python-sphinx)) - (home-page "http://statsmodels.sourceforge.net/") + (home-page "https://statsmodels.sourceforge.net/") (synopsis "Statistical modeling and econometrics in Python") (description "Statsmodels is a Python package that provides a complement to scipy for @@ -2142,18 +2143,18 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-20") + (version "1.7-22") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "0yxd9dgci3rzz807wsb76wis12ipgjv9w86smdyz20jrnn45giyx")))) + "1d4knc1c1hha4gwcakbllzmff4g0mh56y058dn6wp9m2hd7gaz80")))) (build-system r-build-system) (propagated-inputs - (list r-mass r-pixmap r-sp)) - (home-page "http://pbil.univ-lyon1.fr/ADE-4") + (list r-mass r-pixmap r-rcpp r-rcpparmadillo r-sp)) + (home-page "https://pbil.univ-lyon1.fr/ADE-4") (synopsis "Multivariate data analysis and graphical display") (description "The ade4 package contains data analysis functions to analyze ecological @@ -2538,13 +2539,13 @@ functions make it easy to control additional request components.") (define-public r-git2r (package (name "r-git2r") - (version "0.30.1") + (version "0.31.0") (source (origin (method url-fetch) (uri (cran-uri "git2r" version)) (sha256 (base32 - "0h58djc9cim8iskkyhdxllbpf6ycl5zj9g4fp70k57k5qzfi7nc5")))) + "0vfn7kkkarha63vv3k8hi9y5snfsdpwdrbmych560126z9w95nzi")))) (build-system r-build-system) (inputs (list libgit2 zlib)) @@ -2748,7 +2749,7 @@ scaling functions for R.") r-mass r-png r-rcolorbrewer)) - (home-page "http://latticeextra.r-forge.r-project.org/") + (home-page "https://latticeextra.r-forge.r-project.org/") (synopsis "Extra graphical utilities based on lattice") (description "Building on the infrastructure provided by the lattice package, this @@ -2759,13 +2760,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.11.4.2.1") + (version "0.11.4.3.1") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "172vz9j1hck6iwk56hgsrg91n4f11df1n6hy1crbv3cb53rkyjgn")))) + "0pk14pv3q3ykdj8pcgj3z1mkfiw9lbn5ny01hydc0mx98yj4lc2w")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2851,13 +2852,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.19") + (version "2.20") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "14lvvdq3n95qbl7nrqlym1lp05i17m6f9mx3ly35iip83p2s9hir")))) + (base32 "178mc3dqm11y58k8jdhm1yi11bbl1h7bls9d8f94ngmlzjdhbxyp")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2998,13 +2999,13 @@ engine (version 3.8.8.2) is included.") (define-public r-rcurl (package (name "r-rcurl") - (version "1.98-1.9") + (version "1.98-1.10") (source (origin (method url-fetch) (uri (cran-uri "RCurl" version)) (sha256 (base32 - "1iff8cbfrz94mp1m82ai448zhipm8xv6zlxmbysd5hsycxqli3gj")))) + "1m7i0q9scrh2bfr0nqs029052kznhlv3siz9055pzdvgig7jnqjs")))) (properties `((upstream-name . "RCurl"))) (build-system r-build-system) (arguments @@ -3024,7 +3025,7 @@ if (certs != \"\") { .opts = merge.list(.opts, list(cainfo=certs)) } (list curl zlib)) (propagated-inputs (list r-bitops)) - (home-page "http://www.omegahat.net/RCurl") + (home-page "https://www.omegahat.net/RCurl") (synopsis "General network client interface for R") (description "The package allows one to compose general HTTP requests and provides @@ -3054,7 +3055,7 @@ ldap, and also supports cookies, redirects, authentication, etc.") (list libxml2 zlib)) (native-inputs (list pkg-config)) - (home-page "http://www.omegahat.net/RSXML") + (home-page "https://www.omegahat.net/RSXML") (synopsis "Tools for parsing and generating XML within R") (description "Many approaches for both reading and creating XML (and HTML) @@ -3820,14 +3821,14 @@ path-wise fashion.") (define-public r-pkgmaker (package (name "r-pkgmaker") - (version "0.32.2") + (version "0.32.7") (source (origin (method url-fetch) (uri (cran-uri "pkgmaker" version)) (sha256 (base32 - "14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff")))) + "0c7njqwi3szr7dhw3vglgjf2y1hwv0imgb4wfgp42pizsqmacin6")))) (build-system r-build-system) (propagated-inputs (list r-assertthat @@ -3915,14 +3916,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.7-12") + (version "1.7-13") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "1ksxbkf2zb1hs353vc1qr8n2l7v0vcldn2prdnk79nr1lp855q4i")))) + "0bvbgcbj8a5z3rv4z4cx6dlwhk374fwd8l1jkq7slsbfmy8y356s")))) (build-system r-build-system) (propagated-inputs (list r-class r-proxy)) @@ -4142,7 +4143,7 @@ vignettes.") (build-system r-build-system) (native-inputs (list gfortran)) - (home-page "http://mvtnorm.R-forge.R-project.org") + (home-page "https://mvtnorm.R-forge.R-project.org") (synopsis "Package for multivariate normal and t-distributions") (description "This package can compute multivariate normal and t-probabilities, quantiles, random deviates and densities.") @@ -4258,24 +4259,25 @@ selection.") (define-public r-tidyr (package (name "r-tidyr") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "1bv1rvnbbfdqf78qfbawq3yxjhjfdy0mgcla6b17bp336rnpcwb9")))) + "178a9sb07rph4mh7cz004ls0g7d4b7jk065m4ycfrlzxcs9jnlwd")))) (build-system r-build-system) (propagated-inputs - (list r-cpp11 + (list r-cli + r-cpp11 r-dplyr - r-ellipsis r-magrittr r-glue r-lifecycle r-purrr r-rlang + r-stringr r-tidyselect r-tibble r-vctrs)) @@ -4318,14 +4320,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "1hm6lylx05s43rdk9q7xqdcydz495aim16c7xlw94lyw7v5l81kz")))) + "18ibdyd9dyqba1w208pplgasmjpg5dhg4dni8165ld9r6nz12y8a")))) (build-system r-build-system) (propagated-inputs (list r-cli r-lifecycle r-magrittr r-rlang r-vctrs)) @@ -4464,14 +4466,14 @@ data behind them) can be viewed and modified in a web browser.") (define-public r-biased-urn (package (name "r-biased-urn") - (version "2.0.8") + (version "2.0.9") (source (origin (method url-fetch) (uri (cran-uri "BiasedUrn" version)) (sha256 (base32 - "0mmq8zf52p6y76nqm0fcvvg8bdlrfl12mlfr9fznz9zvm26pypi0")))) + "02bb81x1hfvhm6qlcvp88bdpm1fhqak9cjbqz1r7fhg2qfxjpims")))) (properties `((upstream-name . "BiasedUrn"))) (build-system r-build-system) (home-page "https://www.agner.org/random/") @@ -4975,14 +4977,14 @@ closely-packed, non-overlapping points.") (define-public r-sourcetools (package (name "r-sourcetools") - (version "0.1.7") + (version "0.1.7-1") (source (origin (method url-fetch) (uri (cran-uri "sourcetools" version)) (sha256 (base32 - "1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627")))) + "1l9i9ram12pjks8h2gzmj119wf4ixwyhljsfv289dn8dgbdjp0cn")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sourcetools") (synopsis "Tools for reading, tokenizing and parsing R code") @@ -5393,7 +5395,7 @@ can be efficiently implemented directly in the R language.") (list gfortran)) (propagated-inputs (list r-deoptimr)) - (home-page "http://robustbase.r-forge.r-project.org/") + (home-page "https://robustbase.r-forge.r-project.org/") (synopsis "Basic robust statistics") (description "This package analyzes data with robust methods such as @@ -5577,14 +5579,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.") (define-public r-pbapply (package (name "r-pbapply") - (version "1.6-0") + (version "1.7-0") (source (origin (method url-fetch) (uri (cran-uri "pbapply" version)) (sha256 (base32 - "0qbzqgxz3lm97y0k9v2radqblzb4r5zkfrjw5wj1a91dvxz3xhg8")))) + "1h06nz312si2hsy2klrmy6w46q341bl3q5v61g133450w0qykf34")))) (build-system r-build-system) (home-page "https://github.com/psolymos/pbapply") (synopsis "Adding progress bar to apply functions") @@ -5610,7 +5612,7 @@ showing the progress is useful e.g. bootstrap.") (list r-rcpp)) (inputs (list gfortran)) - (home-page "http://optimizer.r-forge.r-project.org") + (home-page "https://optimizer.r-forge.r-project.org") (synopsis "Derivative-free optimization algorithms by quadratic approximation") (description "This package provides a derivative-free optimization by quadratic approximation @@ -5780,20 +5782,19 @@ C++ library for numerical linear algebra and RcppEigen glue.") (define-public r-pbkrtest (package (name "r-pbkrtest") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "pbkrtest" version)) (sha256 (base32 - "1if7msv9i7jhg1as1f7m81a95dnwhwj3yfs24bqr0f6r0ch4b8xj")))) + "1qxnd4pfpsq762x81s3vkw09wdwpfj25bba5474g7z506pqasycf")))) (build-system r-build-system) (propagated-inputs (list r-broom r-dplyr r-lme4 - r-magrittr r-mass r-matrix r-numderiv)) @@ -6075,14 +6076,14 @@ is supported.") (define-public r-lubridate (package (name "r-lubridate") - (version "1.9.0") + (version "1.9.1") (source (origin (method url-fetch) (uri (cran-uri "lubridate" version)) (sha256 (base32 - "0flh3arja7al9xznj5jvicadvq1kb2s63zyg63wlx2bii8gh8dmr")))) + "1brjq18lbnn2r6qiysmps9276rx691a36qiw66x8hrqv55vwxa8d")))) (build-system r-build-system) (propagated-inputs (list r-generics r-timechange)) @@ -6111,7 +6112,7 @@ easy and fun.") (base32 "1pf554vb902vavgqc4c0kgghywbgcvr3lkkr414bxngavcd60lil")))) (build-system r-build-system) - (home-page "http://strimmerlab.org/software/fdrtool/") + (home-page "https://strimmerlab.org/software/fdrtool/") (synopsis "Estimation of false discovery rates and higher criticism") (description "This package provides tools to estimate tail area-based false discovery @@ -6130,24 +6131,22 @@ and the corresponding decision threshold.") (define-public r-forcats (package (name "r-forcats") - (version "0.5.2") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "forcats" version)) (sha256 (base32 - "0hb1m16il1n8nmhp7hx8k2xxq8bd8kp3qqs2pw7xm0iz311hm9hl")))) + "0ki5c84n7xm4iw4aj629l51hm84f6p5wa3bw88d1wbnr15wibfy5")))) (build-system r-build-system) (propagated-inputs (list r-cli - r-ellipsis r-glue r-lifecycle r-magrittr r-tibble - r-rlang - r-withr)) + r-rlang)) (native-inputs (list r-knitr)) (home-page "https://forcats.tidyverse.org") @@ -6481,7 +6480,7 @@ functions.") (list java-jtransforms)) (native-inputs (list java-junit)) - (home-page "http://jdistlib.sourceforge.net/") + (home-page "https://jdistlib.sourceforge.net/") (synopsis "Java library of statistical distributions") (description "JDistlib is the Java Statistical Distribution Library, a Java package that provides routines for various statistical distributions.") @@ -6908,16 +6907,17 @@ normal model.") (define-public r-naniar (package (name "r-naniar") - (version "0.6.1") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "naniar" version)) (sha256 (base32 - "0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm")))) + "1x4ljc6yji7312g6cg1shc85jqv5kaf2zlf5q7sdmqh3wryskvf2")))) (build-system r-build-system) (propagated-inputs - (list r-dplyr + (list r-cli + r-dplyr r-norm r-forcats r-ggplot2 @@ -6928,6 +6928,7 @@ normal model.") r-tibble r-tidyr r-upsetr + r-vctrs r-viridis r-visdat)) (native-inputs @@ -7181,7 +7182,7 @@ highlighted in all linked plots. Interactions with the plots are controlled by the mouse, menus and dialog boxes. An object-oriented programming system is used to allow menus, dialogs, and the response to mouse actions to be customized.") - (home-page "http://homepage.divms.uiowa.edu/~luke/xls/xlsinfo/") + (home-page "https://homepage.divms.uiowa.edu/~luke/xls/xlsinfo/") (license license:expat)))) (define-public r-rlrsim |