diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 91 |
1 files changed, 57 insertions, 34 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7b3483206f..43f9042e9c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> +;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -356,13 +357,13 @@ Munsell colour system.") (define-public r-rcpp (package (name "r-rcpp") - (version "0.12.4") + (version "0.12.5") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "1lyhyaxrnb5w4igi3l1p378s4jblcnrv6h7h5ym42ljm54mm44w3")))) + (base32 "1vw0zbd6zhqixqg7h8ahn1dr1hb492365x419nrp2lhvr60r8i0k")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ Integration") @@ -604,13 +605,13 @@ evaluation (NSE) in R.") (define-public r-dbi (package (name "r-dbi") - (version "0.3.1") + (version "0.4-1") (source (origin (method url-fetch) (uri (cran-uri "DBI" version)) (sha256 (base32 - "0xj5baxwnhl23rd5nskhjvranrwrc68f3xlyrklglipi41bm69hw")))) + "13n6ibmrma42qmq17qgkyjsc0ciwqf17sd7lw7w26pwpyjd4mwgg")))) (build-system r-build-system) (home-page "https://github.com/rstats-db/DBI") (synopsis "R database interface") @@ -624,13 +625,13 @@ R/DBMS implementations.") (define-public r-bh (package (name "r-bh") - (version "1.60.0-1") + (version "1.60.0-2") (source (origin (method url-fetch) (uri (cran-uri "BH" version)) (sha256 (base32 - "08gc3b0irgvpjl59irdxs8jhlbky4yp4fvs3zi4pq0wdwj43cfsk")))) + "136497fng9bcvrf8favpj8inz96pxdwp1rrb2k00sxjxjbgawhg4")))) (build-system r-build-system) (home-page "https://github.com/eddelbuettel/bh") (synopsis "R package providing subset of Boost headers") @@ -642,13 +643,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.8.3") + (version "0.9") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "08d6164m9wqf9qq6yh1s9a0qxwqzqpsq7312hilzy79gxf9gixzr")))) + "1bn6bympg9prr8d16g1g530bddii8i04hf4i2bkw0yf4dsfqq4g8")))) (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr))) @@ -664,13 +665,13 @@ adapted for other output formats, such as HTML or LaTeX.") (define-public r-formatr (package (name "r-formatr") - (version "1.3") + (version "1.4") (source (origin (method url-fetch) (uri (cran-uri "formatR" version)) (sha256 (base32 - "09fsd0z6nhksc1h921h8q28f87hr6d1q8d6dmpxphjylb9r5xmj4")))) + "1fvynq0fj1r9grg9vvfdh5fl2riv6qki9f2rfpyvbvqq3xxpmi3f")))) (build-system r-build-system) (home-page "http://yihui.name/formatR") (synopsis "Format R code automatically") @@ -684,13 +685,13 @@ There is also a Shiny app as a user interface in this package.") (define-public r-highr (package (name "r-highr") - (version "0.5.1") + (version "0.6") (source (origin (method url-fetch) (uri (cran-uri "highr" version)) (sha256 (base32 - "11hyawzhaw3ph5y5xphi7alx6df1d0i6wh0a2n5m4sxxhdrzswnb")))) + "0n9v44dxdy5fhkdmpbpa2p78whyd9z3rhhy42ipdz5m5vsr55qa3")))) (build-system r-build-system) (home-page "https://github.com/yihui/highr") (synopsis "Syntax highlighting for R source code") @@ -765,13 +766,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.12.3") + (version "1.13") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "1v3rzv6wq8mvpdrljsaqk4z3f8323jnv385js24wmn4fglqly6dz")))) + "0v69846myi4fbjp8wiik4295fhba67s3i6ccysghm6x031i2f26q")))) (build-system r-build-system) (propagated-inputs `(("r-evaluate" ,r-evaluate) @@ -915,13 +916,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "1.0.0") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "1ci1y54kaz7g4di79fcibp0m0wkkxn2glchhs6v8jfg6374ka410")))) + "0pj1r01x4ny4capr83dfa19hi5i2sjjxky99schzip8zrq5dzxqf")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1395,14 +1396,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "0.9.2") + (version "0.9.3") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "1dbsaciz39zvsmcyxkmpfm5yxzrpw2iv2nb86525wn80q0cyv0cb")))) + "0ldqam7d9fyxwhr651ld6lsh05lg4v2y8ajxwzq9ywzjmfb3vlpz")))) (build-system r-build-system) (inputs `(("openssl" ,openssl))) @@ -1452,13 +1453,13 @@ functions make it easy to control additional request components.") (define-public r-git2r (package (name "r-git2r") - (version "0.14.0") + (version "0.15.0") (source (origin (method url-fetch) (uri (cran-uri "git2r" version)) (sha256 (base32 - "0jkkrggffpflaaw0gn2hnm1wz83xs31amriim481g73zf30g2bpr")))) + "1rpdf85wy9fp456ypvbhl3p9whkb7kgl0n7rkqxd2bhvyzkvjak8")))) (build-system r-build-system) ;; This R package contains modified sources of libgit2. This modified ;; version of libgit2 is built as the package is built. Hence libgit2 is @@ -1496,13 +1497,13 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "1.11.0") + (version "1.11.1") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "101j15d0f9107pnmdpdwqyvk2ncykq48336rl8lnqp6idiq8id2q")))) + "0ik3l3q62sspdph613f9ik5yz36s8q5nrc50dqgn3pxzvpwpdj2i")))) (build-system r-build-system) (propagated-inputs `(("r-curl" ,r-curl) @@ -1567,13 +1568,13 @@ disk (or a connection).") (define-public r-plotrix (package (name "r-plotrix") - (version "3.6-1") + (version "3.6-2") (source (origin (method url-fetch) (uri (cran-uri "plotrix" version)) (sha256 (base32 - "1y8xnlpy4zba70af9lwj2sshvfdfcmfdh92wamyzj8z9gciailfr")))) + "1jn1k3skmlgyvpijj6vlcn5m2zgrsdh00g1fq8n5dqs1pkl1sqrw")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/plotrix") (synopsis "Various plotting functions") @@ -1646,13 +1647,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.6.700.3.0") + (version "0.6.700.6.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "1mc62b6my568ni18w4clgs6l6ggqrwzsm3lgx0c1prf4rap69s8w")) + "0x736cjg1pbvn8c6h91c88qmmz4pddvvqg88k9c9kwhn24fjrra0")) (modules '((guix build utils))) ;; Remove bundled armadillo sources (snippet @@ -1730,14 +1731,14 @@ encoder/decoder, round-off-error-free sum and cumsum, etc.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "0.9.5") + (version "0.9.6") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 (base32 - "1zz98jxvw3lzva5kkj1n37gbhjwqd96gjs04y6h37pqy6qmkhk8c")))) + "09ajq5miqzz46q0i9svvbh93dbi7xbjn4702d6z3scdz272gx7l2")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2411,13 +2412,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.21.0") + (version "0.30.0") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "0snc6ps75s3ci6sy8mil1wg2i9xmlr1ygh9n244y1brdvp43dfsw")))) + "1ssykygqkxzx9qblxhavxlf2z6r5bhk0s47yw1dllfiyc8zy7jv2")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs @@ -2461,13 +2462,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.50.1") + (version "0.50.2") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "08l32abp7dfnsc49ca4hzznh934y60n5z01x5ga2ixky5961s57c")))) + "0zj27xxx9cyrq16rn4g3l0krqg68p8f2qp18w1w4i767j87amlbj")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (native-inputs @@ -2563,13 +2564,13 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-plotly (package (name "r-plotly") - (version "3.4.13") + (version "3.6.0") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "1pfl9w35iwin8a1hfwcihajyps2ngjbyrmvi61b9lspcdbk39lf8")))) + "15hvqa0sf4z6l6vvr614zjszfphwpv66zpc665iyiynq0pd1jv2c")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -2593,6 +2594,28 @@ directly from R. Once uploaded to a plotly account, plotly graphs (and the data behind them) can be viewed and modified in a web browser.") (license license:x11))) +(define-public r-biased-urn + (package + (name "r-biased-urn") + (version "1.07") + (source + (origin + (method url-fetch) + (uri (cran-uri "BiasedUrn" version)) + (sha256 + (base32 + "13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3")))) + (properties `((upstream-name . "BiasedUrn"))) + (build-system r-build-system) + (home-page "http://www.agner.org/random/") + (synopsis "Biased urn model distributions") + (description + "This package provides statistical models of biased sampling in the form +of univariate and multivariate noncentral hypergeometric distributions, +including Wallenius' noncentral hypergeometric distribution and Fisher's +noncentral hypergeometric distribution (also called extended hypergeometric +distribution).") + (license license:gpl3+))) (define-public r-ztable (package |