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-rw-r--r--gnu/packages/statistics.scm145
1 files changed, 79 insertions, 66 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 36dda6f215..6e57eb2f4f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -550,14 +550,14 @@ k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.")
 (define-public r-cluster
   (package
     (name "r-cluster")
-    (version "2.1.3")
+    (version "2.1.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cluster" version))
        (sha256
         (base32
-         "1ab466lniykz2a6kdnrbkk7hwair79xfmy6cqvhc8d6nana7mbd3"))))
+         "1dpmss4mdpw6la5kjf135h2jj5j5zmqvykpj6fl6n5wslbn0rwf6"))))
     (build-system r-build-system)
     (native-inputs
      (list gfortran))
@@ -655,14 +655,14 @@ also flexible enough to handle most nonstandard requirements.")
 (define-public r-matrix
   (package
     (name "r-matrix")
-    (version "1.4-1")
+    (version "1.5-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Matrix" version))
        (sha256
         (base32
-         "0zigzgx4dv7ydcyppr5ypna9dxi9vzi944pgy07jnj4l3qflzcj2"))))
+         "0pap6pb0is2s02l43y982p7banwi844bjpgbcgf6fb8pb01vlzam"))))
     (properties `((upstream-name . "Matrix")))
     (build-system r-build-system)
     (propagated-inputs
@@ -677,13 +677,13 @@ and operations on them using LAPACK and SuiteSparse.")
 (define-public r-nlme
   (package
     (name "r-nlme")
-    (version "3.1-158")
+    (version "3.1-159")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "nlme" version))
        (sha256
-        (base32 "08xzaslqmbizj38v746hn09bi7k9h0vjhh0z7mv0c9xsq80v8nx5"))))
+        (base32 "1gqrv4skfgcny4pdpmymdwjcmsd3hla84s76g18dgqj665f5zc4v"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-lattice))
@@ -779,14 +779,14 @@ analysis.")
 (define-public r-survival
   (package
     (name "r-survival")
-    (version "3.3-1")
+    (version "3.4-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "survival" version))
        (sha256
         (base32
-         "1isdrcvrzi118xiyigckj9sq1xl4m92180brmpzdqzhcrl2qg1ql"))))
+         "04pqkklbjpcqaq49h49j0vw18q4hi31ry3szzf84vzk5fba273m4"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-matrix))
@@ -1186,16 +1186,21 @@ transliteration, concatenation, date-time formatting and parsing, etc.")
 (define-public r-stringr
   (package
     (name "r-stringr")
-    (version "1.4.0")
+    (version "1.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "stringr" version))
        (sha256
-        (base32 "1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47"))))
+        (base32 "1cfw1lv64lzg16zb04c0fcmd3gx8vq9x73hqikqhgqd3ra88w3gc"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-glue r-magrittr r-stringi))
+    ;; We can't add r-knitr here, because this package ends up being an input
+    ;; to r-knitr.
+    #;
+    (native-inputs
+     (list r-knitr))
     (home-page "https://github.com/hadley/stringr")
     (synopsis "Simple, consistent wrappers for common string operations")
     (description
@@ -1421,13 +1426,13 @@ for template use among CRAN packages.")
 (define-public r-evaluate
   (package
     (name "r-evaluate")
-    (version "0.15")
+    (version "0.16")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "evaluate" version))
               (sha256
                (base32
-                "0pbwj02y2j7r0msa7747ih1p32xm9bcyr8fa7bysfslb199ywnl8"))))
+                "009861l805z4c10cz0pyym5qd2b2wsiignjkz74vl25718k0mz0h"))))
     (build-system r-build-system)
     (home-page "https://github.com/hadley/evaluate")
     (synopsis "Parsing and evaluation tools for R")
@@ -1551,13 +1556,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.")
 (define-public r-knitr
   (package
     (name "r-knitr")
-    (version "1.39")
+    (version "1.40")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "knitr" version))
               (sha256
                (base32
-                "0wmcj6xv0bcqzmp5vm8s574rfx366rkgm03lgyppk9ywxgnna6n9"))))
+                "1g1mhnkyxd2sv6p1l6iph9dnmpbwxhah78xx4kq543ks6vzrb3wv"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-evaluate r-highr r-stringr r-xfun r-yaml))
@@ -1756,13 +1761,13 @@ defined in different packages.")
 (define-public r-rlang
   (package
     (name "r-rlang")
-    (version "1.0.4")
+    (version "1.0.5")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "rlang" version))
               (sha256
                (base32
-                "15l65as409b3y9sn1jm7lb2019jsp19w6qxsgvimr1badka8kdqz"))))
+                "1argj8pvf8b19693r6j7rw1fl4bd99b39h5y52qrm1wpcvjkba9d"))))
     (build-system r-build-system)
     (home-page "http://rlang.tidyverse.org")
     (synopsis "Functions for base types, core R and Tidyverse features")
@@ -1803,13 +1808,13 @@ and printing capabilities than traditional data frames.")
 (define-public r-dplyr
   (package
     (name "r-dplyr")
-    (version "1.0.9")
+    (version "1.0.10")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "dplyr" version))
               (sha256
                (base32
-                "0sxl9yzccsdhlrrwj26lmh9frsijxyfaf7csv8mf7d0q4qqzgqg2"))))
+                "0aqggs0gk95b326gzqjab8i27cna1hzik3zi5l2kkr5l4zv3kdis"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-generics
@@ -2173,13 +2178,13 @@ jackknifed confidence intervals are available for most estimates.")
 (define-public r-rversions
   (package
     (name "r-rversions")
-    (version "2.1.1")
+    (version "2.1.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "rversions" version))
               (sha256
                (base32
-                "1cbwwbz8lqx2n33xr4q904whvld22s63rpyy1nn93395l7ssrakr"))))
+                "0q5ip3rkhcxz7472fbqddrw3a2wm31b18w7ax0pi6wc27qiihn6y"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-curl r-xml2))
@@ -2353,14 +2358,14 @@ module, Java Server Pages, and Python's psp module.")
 (define-public r-desc
   (package
     (name "r-desc")
-    (version "1.4.1")
+    (version "1.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "desc" version))
        (sha256
         (base32
-         "0m3g5m0g08k674zh4lq0ihmqiwz8jpsfqrdwfqp5p4ngxi8vp7lg"))))
+         "0z1259ghccmrjylydra4bpryqasirsky7bc4gsx0k327pqacz2km"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cli r-r6 r-rprojroot))
@@ -2434,14 +2439,14 @@ collation, and NAMESPACE files.")
 (define-public r-openssl
   (package
     (name "r-openssl")
-    (version "2.0.2")
+    (version "2.0.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "openssl" version))
        (sha256
         (base32
-         "1i7il5kkr1yp2xk8zw7max4llga4hfz0cx9sx0v2xnb9pg4ksbc6"))))
+         "1al6cb0qwafa32dxr2hhhv6hvbp26hiykamn7w27z1gc1d99ipkw"))))
     (build-system r-build-system)
     (arguments
      (list
@@ -2476,13 +2481,13 @@ integers.")
 (define-public r-httr
   (package
     (name "r-httr")
-    (version "1.4.3")
+    (version "1.4.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "httr" version))
               (sha256
                (base32
-                "0skwi501rzndywn81704d68n1l6lrvqilf91q08cjfhpjvx171ls"))))
+                "0pa3ypkq6kq6sw7b8w62rfpcbjwhc49y8nkvk900s9pfycijbn21"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-curl r-jsonlite r-openssl r-mime r-r6))
@@ -2523,13 +2528,13 @@ pure C implementation of the Git core methods.")
 (define-public r-rstudioapi
   (package
     (name "r-rstudioapi")
-    (version "0.13")
+    (version "0.14")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "rstudioapi" version))
               (sha256
                (base32
-                "12vdfzzjc6mv4h105l8cp108j3hjk0mqmg23m6mqr3jarfymphxa"))))
+                "1i5g9l2739mlaglzg98iifycx98jlzxj5933qfb8lwmdn63hk7a6"))))
     (build-system r-build-system)
     (native-inputs
      (list r-knitr))
@@ -2605,14 +2610,14 @@ were originally a part of the r-devtools package.")
 (define-public r-hms
   (package
     (name "r-hms")
-    (version "1.1.1")
+    (version "1.1.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "hms" version))
        (sha256
         (base32
-         "0qlh4s1g9rbm6c3s906dhw3xsz28m8fg6cyynlkhvis533dk0pvb"))))
+         "1vdx08irnh8q5232hriv47hh88hc55nbbrff7y6zbainff2akrhy"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-ellipsis r-lifecycle r-pkgconfig r-rlang r-vctrs))
@@ -2721,13 +2726,13 @@ well as additional utilities such as panel and axis annotation functions.")
 (define-public r-rcpparmadillo
   (package
     (name "r-rcpparmadillo")
-    (version "0.11.2.0.0")
+    (version "0.11.2.4.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RcppArmadillo" version))
               (sha256
                (base32
-                "0f0rrv254jd66m80vm4bmk3yrnyw1kdfgdki6zbcih7mbvw7mqgr"))))
+                "1y499idmci72x6gpj855vf4rlzh1r2qqpxyzs53r59ay8f4g0jar"))))
     (properties `((upstream-name . "RcppArmadillo")))
     (build-system r-build-system)
     (propagated-inputs
@@ -2813,13 +2818,13 @@ certain criterion, e.g., it contains a certain regular file.")
 (define-public r-rmarkdown
   (package
     (name "r-rmarkdown")
-    (version "2.14")
+    (version "2.16")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "rmarkdown" version))
         (sha256
-          (base32 "081j1hpxcwadn606ch5lq279s66c1b0f0mjvap7yimnrljpigv79"))))
+          (base32 "0wgsc5ax4wynviasyxr240fkjk0g1wm9aq7b42mx66f43424xlyk"))))
     (properties `((upstream-name . "rmarkdown")))
     (build-system r-build-system)
     (propagated-inputs
@@ -2846,15 +2851,17 @@ variety of formats.")
 (define-public r-gtable
   (package
     (name "r-gtable")
-    (version "0.3.0")
+    (version "0.3.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "gtable" version))
               (sha256
                (base32
-                "1lyncxf2dqdjgw1071cn9c8zwzkz6sldnd5cgmicf70bc726qf7x"))))
+                "1dbwxhxawwbmaixwxxglazv5bici56qvmjk7sqa8j66m49bjrmlb"))))
     (properties `((upstream-name . "gtable")))
     (build-system r-build-system)
+    (native-inputs
+     (list r-knitr))
     (home-page "https://cran.r-project.org/web/packages/gtable")
     (synopsis "R library to arrange grobs in tables")
     (description
@@ -2928,13 +2935,13 @@ a column in data frame.")
 (define-public r-rsqlite
   (package
     (name "r-rsqlite")
-    (version "2.2.15")
+    (version "2.2.17")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RSQLite" version))
               (sha256
                (base32
-                "1cypz9i85fnp3izk0px9r8s3l1jwn5kmgs2avc0fi3fad1775029"))))
+                "16l64ganvdlaldmqryz2c95id2m8vchlj9x5rz9kppbmhy122vjw"))))
     (properties `((upstream-name . "RSQLite")))
     (build-system r-build-system)
     (propagated-inputs
@@ -3346,9 +3353,8 @@ using the multicore functionality of the parallel package.")
            ("https://cdn.datatables.net/buttons/1.6.1/js/buttons.bootstrap4.js"
             "0hfclipg43wr9p7irrcn9vp5wji8z7gz6y5mclkq88z1mlpwklzf"
             "datatables-extensions/Buttons")
-           ;; It is not clear what version the bundled file corresponds to.
-           ("https://cdnjs.cloudflare.com/ajax/libs/jszip/2.5.0/jszip.js"
-            "18hpj9vwgki56ijb20l5gwmqa5p1d0xprn57z2mlg3ph6ll0bdkd"
+           ("https://cdnjs.cloudflare.com/ajax/libs/jszip/3.10.1/jszip.js"
+            "01l5lw49jz2qn6k9i63dk4llar4lvvpd6xp6i45mpwfk49fbxqg2"
             "datatables-extensions/Buttons")
            ("https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/pdfmake.js"
             "1sfw80az2cgzin5wk7q1p2n9zm66c35cz0m6isdygml81i594wia"
@@ -3564,13 +3570,13 @@ using the multicore functionality of the parallel package.")
             "datatables-extensions/Select"))))
     (package
       (name "r-dt")
-      (version "0.23")
+      (version "0.25")
       (source (origin
                 (method url-fetch)
                 (uri (cran-uri "DT" version))
                 (sha256
                  (base32
-                  "0w6wgiwa3zgldp175a3q7zfw853xqc7mfj34n6hja48ln7yf42in"))
+                  "0as43h4minnz5c09nvbvq8b1d9506mzkcdl98bhf87rf0q9qgz0d"))
                 (modules '((guix build utils)))
                 (snippet
                  '(for-each delete-file
@@ -4132,14 +4138,14 @@ most common form of color blindness.")
 (define-public r-viridislite
   (package
     (name "r-viridislite")
-    (version "0.4.0")
+    (version "0.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "viridisLite" version))
        (sha256
         (base32
-         "0siwr0vq80gs3sbyd542zjb0cl9av5zqdm0fqnym5g6ribf5b6c4"))))
+         "15zaf2c7kzjf3i0g7y8w6jlgfkpprqj2zl346y5imz75r8fdp5m8"))))
     (properties `((upstream-name . "viridisLite")))
     (build-system r-build-system)
     (home-page "https://github.com/sjmgarnier/viridisLite")
@@ -4183,14 +4189,14 @@ selection.")
 (define-public r-tidyr
   (package
     (name "r-tidyr")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tidyr" version))
        (sha256
         (base32
-         "1a0k296a0jb2xi5zgfrqfmmw8197bwibjl7a04fm49vqx6livl4c"))))
+         "1bv1rvnbbfdqf78qfbawq3yxjhjfdy0mgcla6b17bp336rnpcwb9"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cpp11
@@ -4445,14 +4451,14 @@ following problems:
 (define-public r-base64
   (package
     (name "r-base64")
-    (version "2.0")
+    (version "2.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "base64" version))
        (sha256
         (base32
-         "1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"))))
+         "1w9m4n29xmj7px8fbmha04vq146bxfqi7ipj1ag09hlm05y6h8jd"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-openssl))
@@ -4467,13 +4473,13 @@ package instead.")
 (define-public r-hmisc
   (package
     (name "r-hmisc")
-    (version "4.7-0")
+    (version "4.7-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Hmisc" version))
        (sha256
-        (base32 "1gc71wg6f17x6nriphs1kk39ix7lpqk32clk1qshqy8wl6f2vv19"))))
+        (base32 "0zrfi2mmi6wfl6440iqflzzmkina8dhxia2qsamqw6djd0d5fp9j"))))
     (properties `((upstream-name . "Hmisc")))
     (build-system r-build-system)
     (native-inputs
@@ -4858,13 +4864,13 @@ Wall Street Journal, among others.  This package also provides
 (define-public r-statmod
   (package
     (name "r-statmod")
-    (version "1.4.36")
+    (version "1.4.37")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "statmod" version))
               (sha256
                (base32
-                "1hkvklcav6gj4zib4g3b4xwsdsbsmnzdblr0v6jaqv227p49gs0l"))))
+                "04v9nynv3lakhnd7b17v5syrlnscrxml71jnd3r93chckskwillh"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/statmod")
     (native-inputs
@@ -5245,14 +5251,14 @@ analysis} (PCA) by projection pursuit.")
 (define-public r-rrcov
   (package
     (name "r-rrcov")
-    (version "1.7-0")
+    (version "1.7-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rrcov" version))
        (sha256
         (base32
-         "1z98j9973hl19b70dcwfcf55ifxr2a9v53daaq2sagynh95aik6b"))))
+         "1rd4r4acgpr25x2iy7v2mnahmmf76a378zq16gnpwv5ljycs05g1"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-lattice r-mvtnorm r-pcapp r-robustbase))
@@ -5486,14 +5492,14 @@ metrics for evaluating models.")
 (define-public r-matrixmodels
   (package
     (name "r-matrixmodels")
-    (version "0.5-0")
+    (version "0.5-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "MatrixModels" version))
        (sha256
         (base32
-         "1va6i6bpkq71rzl9i4xgyc5x7qcksa3nfzihlaggf6aj30dayzx8"))))
+         "1a9ywhv1yklfcp0jgirkih3ib5scs61hkscmyddwfh5blpgmpi9z"))))
     (properties `((upstream-name . "MatrixModels")))
     (build-system r-build-system)
     (propagated-inputs
@@ -5773,14 +5779,14 @@ first and second order derivatives.")
 (define-public r-sn
   (package
     (name "r-sn")
-    (version "2.0.2")
+    (version "2.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sn" version))
        (sha256
         (base32
-         "140p1pl5sq0laxhcm16kbqm986hlhqj90gj3jccga491gh14jywm"))))
+         "12s4g9rfrnijdil7bqw66ikj5k3w6bdnz6fsgqsp0bkfsap9nps9"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-mnormt r-numderiv r-quantreg))
@@ -5950,17 +5956,24 @@ and the corresponding decision threshold.")
 (define-public r-forcats
   (package
     (name "r-forcats")
-    (version "0.5.1")
+    (version "0.5.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "forcats" version))
        (sha256
         (base32
-         "12d2nv2w15085jscgidmjdnr1ryymciflcmal6ldmgp2fkl9dyy4"))))
+         "0hb1m16il1n8nmhp7hx8k2xxq8bd8kp3qqs2pw7xm0iz311hm9hl"))))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-ellipsis r-magrittr r-tibble r-rlang))
+     (list r-cli
+           r-ellipsis
+           r-glue
+           r-lifecycle
+           r-magrittr
+           r-tibble
+           r-rlang
+           r-withr))
     (native-inputs
      (list r-knitr))
     (home-page "https://forcats.tidyverse.org")
@@ -6462,14 +6475,14 @@ mediation and estimating power.")
 (define-public r-clubsandwich
   (package
     (name "r-clubsandwich")
-    (version "0.5.7")
+    (version "0.5.8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "clubSandwich" version))
        (sha256
         (base32
-         "1chq0bjz0yskm3cs8k6019j9v1m3fiz4p2ysk3xmqxlcihmnvv0b"))))
+         "1y894n35l4lzqm15ifxjnpnh95dldsfivv4098571yqf1z4a253q"))))
     (properties `((upstream-name . "clubSandwich")))
     (build-system r-build-system)
     (propagated-inputs
@@ -6901,13 +6914,13 @@ Calculates confidence intervals for the difference in proportion.")
 (define-public r-desctools
   (package
     (name "r-desctools")
-    (version "0.99.45")
+    (version "0.99.46")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "DescTools" version))
         (sha256
-          (base32 "01gbmikpzjmymvb7p76k7wqvfvwznl6v0qa78jy7bi6fzmbp1zld"))))
+          (base32 "1f6jhvwgzv8mw5vmy7nqh8bpmrrzl36x1bq1ggnk3va24fcd01jq"))))
     (properties `((upstream-name . "DescTools")))
     (build-system r-build-system)
     (propagated-inputs
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-02-03 00:58:52 +0000