diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 162 |
1 files changed, 86 insertions, 76 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7ff56d7355..3588cb459a 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Vicente Vera Parra <vicentemvp@gmail.com> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2017, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> @@ -508,14 +508,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-58.2") + (version "7.3-58.3") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "0jvqvlmb1fjqhcnix1blj7hjiyxy7m1rfjdv3sr2nhyad19rvh5m")))) + "1bkrbhm230nm4px1rw93mxhigpvivinj22f7r4mx786whaamkra2")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") @@ -700,13 +700,13 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-41") + (version "1.8-42") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 - (base32 "14769zs1sh1bz3c87hs4vhy2y9n28vglfqfrdgpysxdyw87h6yig")))) + (base32 "1ixn5pgc3qriy5nfd264dz7l126xg4k4zidgkqag41mdcj5w6zq8")))) (build-system r-build-system) (propagated-inputs (list r-matrix r-nlme)) @@ -780,14 +780,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.5-0") + (version "3.5-5") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "12nwvfa921m546acxiidpif6g1laz1h1vxbwc45ww69wdc51gcmq")))) + "0xl4arr70xqc7rnix9x9w83985ry0wpcmfi79vh5h0jbal4sax8k")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) @@ -1235,17 +1235,16 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.4.0") + (version "3.4.1") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0gj7n2y8msnmhk3x4r481biknvn2dqhahwazfqwr8f3lz599wbx8")))) + (base32 "113d5khg0lswrbwasavl2l5jgpcd3h519mcb5iq2cq0dz4rw66q4")))) (build-system r-build-system) (propagated-inputs (list r-cli - r-digest r-glue r-gtable r-isoband @@ -1300,21 +1299,27 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.3.0") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "1lkyzavgdivxmpvyqx81caizy1yrr8xp47qzgmfcn6k4inrn51jl")))) + "0dji1iyf6x9vg6gjklzkb3x9vfydfi95idkvckj6208b1rwgwsj4")))) (build-system r-build-system) (native-inputs (list pkg-config)) (inputs - (list cairo fontconfig freetype zlib)) + (list cairo fontconfig freetype)) (propagated-inputs - (list r-gfonts r-htmltools r-memoise r-rcpp r-systemfonts)) + (list r-curl + r-fontquiver + r-gfonts + r-htmltools + r-memoise + r-rcpp + r-systemfonts)) (home-page "https://cran.r-project.org/web/packages/gdtools") (synopsis "Utilities for graphical rendering") (description @@ -1703,13 +1708,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.1.6") + (version "3.1.7") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "1bndjkwv6f9x3a0wklwnf7bymn655yhw6cmazb285hbmci0qrjx7")))) + "1awfcpabn6f7rdi7lvdj6hzm3gq6qzn38rls6m36q72874bnpn0s")))) (build-system r-build-system) (propagated-inputs (list r-brio @@ -1764,13 +1769,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "1.0.6") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0q372q8cdc3c5pf8pmjyp7qc7lb5krg47apfl46iqc7al2c3v5z6")))) + "0nrk9634l05bsn9kl9zf0ylqvm9swlzic8fggkyhbp4y3kcmk67q")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1782,14 +1787,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.1.8") + (version "3.2.0") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "1spdbk5s0wlipfq8jc08p2mk5fq2ql9hm8iwwlfzdlhqbl3hxwxc")))) + "12i9cshnj2lygadh03zjw1zn5dr13wspcrq2dprl5qrrr95z2bwg")))) (build-system r-build-system) (propagated-inputs (list r-fansi @@ -1848,18 +1853,17 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "2.3.0") + (version "2.3.1") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1zqz2ml4pgi93miz5flxmm7cjlh4w33hi45phyvv89i9gxp4a387")))) + "0a5cnh0fr81mak9ccqr91nsjqlxsnf6a2lmwrsgv7g1sjag0b4p1")))) (build-system r-build-system) (propagated-inputs - (list r-assertthat - r-blob + (list r-blob r-cli r-dbi r-dplyr @@ -1871,6 +1875,7 @@ database.") r-r6 r-rlang r-tibble + r-tidyr r-tidyselect r-vctrs r-withr)) @@ -1909,14 +1914,14 @@ transformations.") (define-public r-formula (package (name "r-formula") - (version "1.2-4") + (version "1.2-5") (source (origin (method url-fetch) (uri (cran-uri "Formula" version)) (sha256 (base32 - "1bsw282i5m8rlirbhz7hqvf25zbxschk7yrp152whbzdnmry6w6b")))) + "0p1m9pqcn8ns0sn67js53677q8gwxgbl4bymcn5y2r0dc1s4c9c6")))) (properties `((upstream-name . "Formula"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/Formula") @@ -1952,13 +1957,13 @@ and density estimation.") (define-public r-chron (package (name "r-chron") - (version "2.3-59") + (version "2.3-60") (source (origin (method url-fetch) (uri (cran-uri "chron" version)) (sha256 (base32 - "1xh18s4mip3xc9vn2xw6a2gpz09s3zmxw8sarn6qbrs2gjwschxr")))) + "1vlifh316q76g4015126am158i702mi88xjpzj3ylv2vqp77a1hf")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/chron") (synopsis "Chronological R objects which can handle dates and times") @@ -1970,13 +1975,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.14.6") + (version "1.14.8") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "05h99rk2s1ds9igrqw2nhnk6yahgssszqlnw0y0p9p83lsndp30x")))) + "1z9rf5anjvg3bmbbajb12nf65jsxdw35ad9piysrp76zcx9wxchl")))) (properties `((upstream-name . "data.table"))) (build-system r-build-system) (inputs @@ -2415,14 +2420,14 @@ other packages.") (define-public r-commonmark (package (name "r-commonmark") - (version "1.8.1") + (version "1.9.0") (source (origin (method url-fetch) (uri (cran-uri "commonmark" version)) (sha256 (base32 - "1gjwpmcxv15y1jg9f7kzp49s68kj1skjsh5g264f9lp37l4wpbcn")))) + "13slfv9xpd5fhccw6xgm274d338gmpvc4sdzd943dm684rd1ml3d")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/commonmark") (synopsis "CommonMark and Github Markdown Rendering in R") @@ -2473,14 +2478,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "2.0.5") + (version "2.0.6") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "1lw60yq20r42l7y1wbp79s3mk3dwg62v0dh7jx1cdd7rb46i9hla")))) + "1wxkq613054ic0w58a41fyr7bp7f939vhsgj6hbhs3r72qm07wvp")))) (build-system r-build-system) (arguments (list @@ -2515,13 +2520,13 @@ integers.") (define-public r-httr (package (name "r-httr") - (version "1.4.4") + (version "1.4.5") (source (origin (method url-fetch) (uri (cran-uri "httr" version)) (sha256 (base32 - "0pa3ypkq6kq6sw7b8w62rfpcbjwhc49y8nkvk900s9pfycijbn21")))) + "0v3gyzgwv6v3rmpr5sfks8ygp1inmrddsiyamfcz039bi1zsqfzr")))) (build-system r-build-system) (propagated-inputs (list r-curl r-jsonlite r-openssl r-mime r-r6)) @@ -2665,13 +2670,13 @@ time-of-day values, based on the @code{difftime} class.") (define-public r-readr (package (name "r-readr") - (version "2.1.3") + (version "2.1.4") (source (origin (method url-fetch) (uri (cran-uri "readr" version)) (sha256 (base32 - "0qw2c51421zzfwpy1nkmxs9ai1r9m4yxrz0ig0wg2z78h1gda3fp")))) + "03gbzf29kdvf4rdqgdq2jm7c9ifjla3qzpiyqzw1x9jgijj4y54q")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -2760,13 +2765,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.11.4.3.1") + (version "0.12.0.1.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0pk14pv3q3ykdj8pcgj3z1mkfiw9lbn5ny01hydc0mx98yj4lc2w")))) + "1spvsfzkzfw4l0igj2cx9ba3l2hwzqj180vndn4imdy0g4xibikk")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2885,15 +2890,20 @@ variety of formats.") (define-public r-gtable (package (name "r-gtable") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "gtable" version)) (sha256 (base32 - "1dbwxhxawwbmaixwxxglazv5bici56qvmjk7sqa8j66m49bjrmlb")))) + "1j162vkyvkyyz61smw36crgmd76jic17n9qfmn0cyvafzdyqyiwd")))) (properties `((upstream-name . "gtable"))) (build-system r-build-system) + (propagated-inputs + (list r-cli + r-glue + r-lifecycle + r-rlang)) (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/gtable") @@ -2948,13 +2958,13 @@ that package, other packages are unaffected.") (define-public r-blob (package (name "r-blob") - (version "1.2.3") + (version "1.2.4") (source (origin (method url-fetch) (uri (cran-uri "blob" version)) (sha256 (base32 - "06v3ldnmf6f99riym1cjbm5rklxmg6cpdixm6armc6rxxs1xd21d")))) + "13vjy9f3zki8w1damz6kqq47689mk4l1navnwh7r6z8lqkmj52fh")))) (build-system r-build-system) (propagated-inputs (list r-rlang r-vctrs)) @@ -2969,22 +2979,22 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.20") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "1km7rg2yg3lmjz7lplypw61sx78mykyksgbdq3j5kjpcvirdbdaj")))) + "0csx2zz4zlr11nrzcas1lzhzjb4ygv6nijg2jpkp5l4fs2hijbj4")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs - (list r-dbi + (list r-bit64 + r-blob + r-cpp11 + r-dbi r-memoise r-plogr - r-rcpp - r-bit64 - r-blob r-pkgconfig)) (native-inputs (list r-knitr)) @@ -3041,13 +3051,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.99-0.13") + (version "3.99-0.14") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "0fppx0jnqxx3l7y8ivb56sq0fjcqv3fn226i4s03mi7hwak6iic5")))) + "1ygi65ddgbsamxw2rm0p2clfak1xj44xyisgk48y72cd9ldaddic")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) @@ -3629,13 +3639,13 @@ using the multicore functionality of the parallel package.") extensions))))) (package (name "r-dt") - (version "0.26") + (version "0.27") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "0303yxvzi8ln677716pv7m6fih5dclfqw9aram0lzm16w4mr64n4")) + "16i82f380ibl0caqvkg010zbxzav0iwwxac8zwy96c745g6xqbz3")) (modules '((guix build utils) (ice-9 match))) (snippet @@ -3821,14 +3831,14 @@ path-wise fashion.") (define-public r-pkgmaker (package (name "r-pkgmaker") - (version "0.32.7") + (version "0.32.8") (source (origin (method url-fetch) (uri (cran-uri "pkgmaker" version)) (sha256 (base32 - "0c7njqwi3szr7dhw3vglgjf2y1hwv0imgb4wfgp42pizsqmacin6")))) + "0i8prn63miajx7wlil5dchasqnjp054gwp0h7x6586q55j6mgwqg")))) (build-system r-build-system) (propagated-inputs (list r-assertthat @@ -4649,13 +4659,13 @@ package instead.") (define-public r-hmisc (package (name "r-hmisc") - (version "4.7-2") + (version "5.0-1") (source (origin (method url-fetch) (uri (cran-uri "Hmisc" version)) (sha256 - (base32 "0lyacs5q6mdg9lirixl9r2dqs9ljxyn5d53mmb04ci0jam3vk0wc")))) + (base32 "0ngsm05ngzchy4l8a6fww3m2qqz8m04rcbl1zg7va30mia7hyffv")))) (properties `((upstream-name . "Hmisc"))) (build-system r-build-system) (native-inputs @@ -4663,19 +4673,19 @@ package instead.") (propagated-inputs (list r-base64enc r-cluster + r-colorspace r-data-table r-foreign r-formula r-ggplot2 r-gridextra r-gtable - r-lattice - r-latticeextra + r-knitr r-htmltable r-htmltools r-nnet + r-rmarkdown r-rpart - r-survival r-viridis)) (home-page "http://biostat.mc.vanderbilt.edu/Hmisc") (synopsis "Miscellaneous data analysis and graphics functions") @@ -5289,14 +5299,14 @@ to change in the future.") (define-public r-flexmix (package (name "r-flexmix") - (version "2.3-18") + (version "2.3-19") (source (origin (method url-fetch) (uri (cran-uri "flexmix" version)) (sha256 (base32 - "0lcvsvmhkbwac50l109an6prl1ng4mkyvr436344b20897ph28j6")))) + "1s8jpii6ws6hra8w11fn3x84wrdrrlycnrhn5ijy6ibdpc6a9xdd")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-modeltools r-nnet)) @@ -5555,13 +5565,13 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.1-7") + (version "1.1-8") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 - (base32 "0zkmj7crkkvi7ki88f6vfn7x8gf0ycrbg13wann7wirj4cwjvid4")))) + (base32 "1k6i18ywfh0xlc7ipgvz1g9gdgkyz5phf1cwyfv8mn2nwgag3h6l")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (native-inputs @@ -5749,14 +5759,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-31") + (version "1.1-32") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "1zgdfbzc8lv4rrsjdacagwa693ij2bmn6xkc1bnfbv1z7pix3zss")))) + "0j03qn6l8zxlwnrkr1vyrgfcczf1wkrmczyvf3ncd5ad72jcnijy")))) (build-system r-build-system) (propagated-inputs (list r-boot @@ -6076,14 +6086,14 @@ is supported.") (define-public r-lubridate (package (name "r-lubridate") - (version "1.9.1") + (version "1.9.2") (source (origin (method url-fetch) (uri (cran-uri "lubridate" version)) (sha256 (base32 - "1brjq18lbnn2r6qiysmps9276rx691a36qiw66x8hrqv55vwxa8d")))) + "19s4cm6a73b9q519mmgf2qxjmd2bsjff19ds3hk8ksgz98d46xl9")))) (build-system r-build-system) (propagated-inputs (list r-generics r-timechange)) @@ -6597,7 +6607,7 @@ files, including Rmarkdown files.") (define-public readstat (package (name "readstat") - (version "1.1.8") + (version "1.1.9") (source (origin (method git-fetch) @@ -6606,16 +6616,16 @@ files, including Rmarkdown files.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1r04lq45h1yn34v1mgfiqjfzyaqv4axqlby0nkandamcsqyhc7y4")))) + (base32 "0aqalr86d7h9sp9zjkydw3ap4s54qgq2ml6p8gd0gnn1jf0ljm72")))) (build-system gnu-build-system) (native-inputs (list autoconf automake gnu-gettext libtool)) (inputs - (list zlib)) ; libz + (list zlib)) + (home-page "https://github.com/WizardMac/ReadStat") (synopsis "Convert SAS, Stata, and SPSS files") (description "Command-line tool and C library for reading files from popular stats packages like SAS, Stata and SPSS.") - (home-page "https://github.com/WizardMac/ReadStat") (license license:expat))) (define-public r-quantpsyc @@ -7087,13 +7097,13 @@ Calculates confidence intervals for the difference in proportion.") (define-public r-desctools (package (name "r-desctools") - (version "0.99.47") + (version "0.99.48") (source (origin (method url-fetch) (uri (cran-uri "DescTools" version)) (sha256 - (base32 "0dd1n2dwyh8sdsmmsqj670hmawffqck35qdanrgb4yfcc0zzmd1j")))) + (base32 "0axn9sgv8cwzmrnwrpbla8zcfpii1xlsyjxbgk85xlcsmv05iq6v")))) (properties `((upstream-name . "DescTools"))) (build-system r-build-system) (propagated-inputs @@ -7109,7 +7119,7 @@ Calculates confidence intervals for the difference in proportion.") r-rcpp r-readxl r-rstudioapi)) - (native-inputs (list gfortran)) + (native-inputs (list gfortran r-r-rsp)) (home-page "https://andrisignorell.github.io/DescTools/") (synopsis "Tools for Descriptive Statistics") (description |