diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 93 |
1 files changed, 50 insertions, 43 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 18136f1396..b81bb42073 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -106,7 +106,7 @@ be output in text, PostScript, PDF or HTML.") (define-public r-minimal (package (name "r-minimal") - (version "3.3.3") + (version "3.4.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -114,7 +114,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 - "0v7wpj89b0i3ad3fi1wak5c93hywmbxv8sdnixhq8l17782nidss")))) + "14cb8bwi3akvdb6934kqic2862f2qgav6cq4g0h7gi2p4ka9x3i8")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-2017a) @@ -184,13 +184,15 @@ be output in text, PostScript, PDF or HTML.") ;; making "help()" print nothing at all. (lambda _ (setenv "PAGER" "cat") #t)) (add-before 'check 'set-timezone - ;; Some tests require the timezone to be set. - (lambda* (#:key inputs #:allow-other-keys) - (setenv "TZ" "UTC") - (setenv "TZDIR" - (string-append (assoc-ref inputs "tzdata") - "/share/zoneinfo")) - #t)) + ;; Some tests require the timezone to be set. However, the + ;; timezone may not just be "UTC", or else a brittle regression + ;; test in reg-tests-1d will fail. + (lambda* (#:key inputs #:allow-other-keys) + (setenv "TZ" "UTC+1") + (setenv "TZDIR" + (string-append (assoc-ref inputs "tzdata") + "/share/zoneinfo")) + #t)) (add-after 'build 'make-info (lambda _ (zero? (system* "make" "info")))) (add-after 'build 'install-info @@ -262,14 +264,14 @@ available, greatly increasing its breadth and scope.") (define-public r-boot (package (name "r-boot") - (version "1.3-18") + (version "1.3-19") (source (origin (method url-fetch) (uri (cran-uri "boot" version)) (sha256 (base32 - "0pi348vvgzn1ny54yxhw6kq6nl7rx9bpr9ji1a6wqs8ah5zj7z8j")))) + "16hsw4bw9pkfc2lqxfwycm1sbvbrm4linvm0ci71n8sxc7srvkis")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/boot") (synopsis "Bootstrap functions for R") @@ -283,14 +285,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-45") + (version "7.3-47") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "13lp5919h2bnpmf8rbmkar8a41yx62fnx66pkvljvqf60wa29qsx")))) + "1gy6z7ly9wn86rfn9xrmqiqq1ijw3pkasrr2299kbzsgx2mwsi7d")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -514,14 +516,14 @@ single hidden layer, and for multinomial log-linear models.") (define-public r-rpart (package (name "r-rpart") - (version "4.1-10") + (version "4.1-11") (source (origin (method url-fetch) (uri (cran-uri "rpart" version)) (sha256 (base32 - "119dvh2cpab4vq9blvbkil5hgq6w018amiwlda3ii0fki39axpf5")))) + "165djqj7lk81jr7z5fwccq3h7ayys26hx1kj9hndvg2rkyaq1arq")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/rpart") (synopsis "Recursive partitioning and regression trees") @@ -1124,13 +1126,13 @@ considerably faster, produces smaller files, and leaves text as is.") (define-public r-assertthat (package (name "r-assertthat") - (version "0.1") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "assertthat" version)) (sha256 (base32 - "0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk")))) + "1wp5znk3xy338x6hknppk702jn596yr735d9i7c3wabm3sdzfgnp")))) (build-system r-build-system) (home-page "https://github.com/hadley/assertthat") (synopsis "Easy pre and post assertions") @@ -1279,13 +1281,13 @@ data derived from /etc/mime.types in UNIX-type systems.") (define-public r-markdown (package (name "r-markdown") - (version "0.7.7") + (version "0.8") (source (origin (method url-fetch) (uri (cran-uri "markdown" version)) (sha256 (base32 - "00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb")))) + "1vcgsh2m2f5kfgappgg71nbf04ff0j1sbk668krjs3r2n89dk3sk")))) (build-system r-build-system) ;; Skip check phase because the tests require the r-knitr package to be ;; installed. This prevents installation failures. Knitr normally @@ -1417,13 +1419,13 @@ understand the language at a deeper level.") (define-public r-memoise (package (name "r-memoise") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "memoise" version)) (sha256 (base32 - "0sq2dhpvxy17v1baj256r0jnygdy3m5a8x4zh6vhv29957qnq6zx")))) + "034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest))) @@ -2443,13 +2445,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.7.700.0.0") + (version "0.7.800.2.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "03cvl2xgmvh4sylw7ff7s020y7k2wzyj34l0zngm09qs44pa9q0m")))) + "025lh504nw7ir1f2xsqnvfkq9rg0rb2xzfn3a2s0b2a9snqdzzwr")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3151,14 +3153,14 @@ the way current RNG settings can be changed.") (define-public r-rtsne (package (name "r-rtsne") - (version "0.11") + (version "0.13") (source (origin (method url-fetch) (uri (cran-uri "Rtsne" version)) (sha256 (base32 - "0zi4nxgpiv1gpdmcnqdhz5kymzp8m5xj02zpf290p1yyydl76bhy")))) + "17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw")))) (properties `((upstream-name . "Rtsne"))) (build-system r-build-system) (propagated-inputs @@ -3431,13 +3433,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.40.0") + (version "0.41.0") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "1hz5fnxz30m3cc7x7ha1swx4pn8c2244z6ka6v9m3l5lpdgc1367")))) + "01l430avj5ggmdsla2kiriix72g0dlzx9klniq321bs0za808v3c")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs @@ -3481,13 +3483,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.52.1") + (version "0.52.2") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "0ihxnbbc1czfbccm8mrh7hjwdik3y90964xhbjday6fci0xjcsi5")))) + "19fjf19cr0p3j9pj17myz39zpi5bh7ci72db3la9my09n6k6mnir")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (native-inputs @@ -3929,14 +3931,14 @@ hierarchical clustering dendrograms.") (define-public r-preprocesscore (package (name "r-preprocesscore") - (version "1.36.0") + (version "1.38.0") (source (origin (method url-fetch) (uri (bioconductor-uri "preprocessCore" version)) (sha256 (base32 - "1n8y12q7145f385gm2k3c6y3vwvin7jlb47la4mnl7mar6pq9kmp")))) + "1vq8hwxz73j93q0ldw5bnhbas1f2ha5q1lr9pp4l8gp8zdwzfrjn")))) (properties `((upstream-name . "preprocessCore"))) (build-system r-build-system) @@ -4150,13 +4152,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-zoo (package (name "r-zoo") - (version "1.7-14") + (version "1.8-0") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "167m142rwwfy8b9hnfc3fi28dcsdjk61g1crqhll6sh5xmgnfn28")))) + "0mqklbx92ifwa0awm7gpm4r9dvwa09p55zjxjnypiqsxy532r4h9")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -4371,14 +4373,14 @@ published by the statistics blog FiveThirtyEight.") (define-public r-compquadform (package (name "r-compquadform") - (version "1.4.2") + (version "1.4.3") (source (origin (method url-fetch) (uri (cran-uri "CompQuadForm" version)) (sha256 (base32 - "0bsgbdblxpv57mbwnf51xyiydp2bqyxkg4zzwqki85cv5xqlrq1n")))) + "1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4")))) (properties `((upstream-name . "CompQuadForm"))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/CompQuadForm") @@ -4879,19 +4881,20 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.29") + (version "5.33") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 (base32 - "098gy8xv9kcl5y0cm93b8chr5sm6crrdxi20bkx9lmwmybl3himv")))) + "1dirmxa4cd05nb0yv0ga6ivw5hkr2zr2cb2lixl1nb6amqn024is")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (propagated-inputs - `(("r-matrixmodels" ,r-matrixmodels) + `(("r-matrix" ,r-matrix) + ("r-matrixmodels" ,r-matrixmodels) ("r-sparsem" ,r-sparsem))) (home-page "http://www.r-project.org") (synopsis "Quantile regression") @@ -4932,20 +4935,22 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-12") + (version "1.1-13") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0j60l5kgx1wvw2wm3jwfqwi63hammaq8gfcxzwa4h552likvaxi9")))) + "13j4a721rx0272pdxrz6nabjv56xb6srklq5w4z1abc82lyvda2z")))) (build-system r-build-system) (native-inputs `(("r-rcpp" ,r-rcpp) ("r-rcppeigen" ,r-rcppeigen))) (propagated-inputs - `(("r-minqa" ,r-minqa) + `(("r-lattice" ,r-lattice) + ("r-matrix" ,r-matrix) + ("r-minqa" ,r-minqa) ("r-nloptr" ,r-nloptr) ("r-mass" ,r-mass) ("r-nlme" ,r-nlme))) @@ -5010,20 +5015,22 @@ to Applied regression, Second Edition, Sage, 2011.") (define-public r-caret (package (name "r-caret") - (version "6.0-73") + (version "6.0-76") (source (origin (method url-fetch) (uri (cran-uri "caret" version)) (sha256 (base32 - "1jzaqwv4glyqqnfbpalgajd0ag866247vvdh5i83ffqs1yhs984h")))) + "1w31xzpmj8p6r6s7s1vwnjxainq54bbh4cqm177ba0myv69hh8cc")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) ("r-foreach" ,r-foreach) ("r-ggplot2" ,r-ggplot2) + ("r-lattice" ,r-lattice) ("r-modelmetrics" ,r-modelmetrics) + ("r-nlme" ,r-nlme) ("r-plyr" ,r-plyr) ("r-reshape2" ,r-reshape2))) (home-page "https://github.com/topepo/caret") |