diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 163 |
1 files changed, 139 insertions, 24 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 9f27f36b8c..3f0706665b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -186,7 +186,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.0.4") + (version "4.1.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -194,7 +194,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "0bl098xcv8v316kqnf43v6gb4kcsv31ydqfm1f7qr824jzb2fgsj")))) + "109732arm6dq6d6v3fl1nyx63lcvv9569j8g6r3s2b18sxcqkrp8")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -587,14 +587,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.3-3") + (version "1.3-4") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "0fvayd6b8w6yzhil85xw7lib68dvxyzpcznwvwczlyxf8ggchzpp")))) + "0fbcbysp3vaivmp1yasmp8mdsldhr826vfs4vyxrjpjl8jfifhmb")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -631,13 +631,13 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-35") + (version "1.8-36") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 - (base32 "1dyphss1bw5rd8apgxsb364rcrkdbc9pcbsa0jy95mg9g5434wvk")))) + (base32 "002n4572sxslz9zfqvs5ys59m8q8wkcc5ks2m0yqs4p7l88xzca2")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -1331,13 +1331,13 @@ adapted for other output formats, such as HTML or LaTeX.") (define-public r-formatr (package (name "r-formatr") - (version "1.9") + (version "1.11") (source (origin (method url-fetch) (uri (cran-uri "formatR" version)) (sha256 (base32 - "0vbzvb91y5cxjbnwpww0r40r6m1l9w1qa979sv7ghhalzr7bib3i")))) + "0353aj975mj0yjc91z76bbfy86y7d5cvlqqyfr93cdng14nnd0dx")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -2099,13 +2099,13 @@ jackknifed confidence intervals are available for most estimates.") (define-public r-rversions (package (name "r-rversions") - (version "2.0.2") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "rversions" version)) (sha256 (base32 - "0ghpla5r3d6zh5dn6d6ii5p0a952lcdv004m88fk8r9k76vz88rm")))) + "1cbwwbz8lqx2n33xr4q904whvld22s63rpyy1nn93395l7ssrakr")))) (build-system r-build-system) (propagated-inputs `(("r-curl" ,r-curl) @@ -2644,13 +2644,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.10.4.0.0") + (version "0.10.5.0.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "00nc7wfrra645mp7dl4j451m3pk3a0b3lrhgf8ydnw862avr9s6v")))) + "059qi872f9h40ns65166qsq1i1jq1mvizm29a0xmqlyn7a5y9ca3")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3410,14 +3410,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.7-6") + (version "1.7-7") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "0blfnv3m5k5xm9bfx1v5awvagqlhqaqpabrvzplf4244c3j259qa")))) + "1phqrx787fkiamgx56sjjmzl9nh5wgpffah0mlwd7ijrf446qz3r")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) @@ -3658,13 +3658,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.58.0") + (version "0.59.0") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "0jab3xk56vqqzgz8jbsvxvsvr83sj0gb3cic0906wjyjijwv8rw3")))) + "178baqrd7rbin3l10zyrkps5sda0q9mdqil9r12b3n99mlk8fhh7")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (arguments @@ -4141,14 +4141,14 @@ hierarchical clustering dendrograms.") (define-public r-fastcluster (package (name "r-fastcluster") - (version "1.1.25") + (version "1.2.3") (source (origin (method url-fetch) (uri (cran-uri "fastcluster" version)) (sha256 (base32 - "01a2xnhhvv1swd4g8p4lzyn7ww7kg49jlnzc7kfz60jqjzpisrpk")))) + "009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz")))) (build-system r-build-system) (home-page "http://danifold.net/fastcluster.html") (synopsis "Fast hierarchical clustering routines") @@ -4378,13 +4378,13 @@ within a category based on their density using quasirandom noise.") (define-public r-beeswarm (package (name "r-beeswarm") - (version "0.3.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "beeswarm" version)) (sha256 (base32 - "1jsggypyww77hkcic03kdb3fp8h938qs142xi0lapzh62bkn2pjj")))) + "016mqcbdksialkmap56rprzna9b6cd6896ml9gl2n2h8yjdk7x2i")))) (build-system r-build-system) (home-page "https://www.cbs.dtu.dk/~eklund/beeswarm/") (synopsis "Implementation of bee swarm plots") @@ -4795,14 +4795,14 @@ data for species delimitation, nearest neighbor based noise detection.") (define-public r-deoptimr (package (name "r-deoptimr") - (version "1.0-8") + (version "1.0-9") (source (origin (method url-fetch) (uri (cran-uri "DEoptimR" version)) (sha256 (base32 - "1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4")))) + "04k5gi0a5hbm6znzvjaipbmkacp694krkqs38dkbxx1gymsallb1")))) (properties `((upstream-name . "DEoptimR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/DEoptimR") @@ -4818,14 +4818,14 @@ can be efficiently implemented directly in the R language.") (define-public r-robustbase (package (name "r-robustbase") - (version "0.93-7") + (version "0.93-8") (source (origin (method url-fetch) (uri (cran-uri "robustbase" version)) (sha256 (base32 - "0mh9d114p3jdrjf8yn4dx5ff41niz5wn411y0ckjcpnazp8d44c9")))) + "16fmnk3p32mi70rkx89l1v4pry3gnrpy9jicnlfnk6lg1pwz5j8w")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -6125,3 +6125,118 @@ input, the effect size can be returned as standardized mean difference, Cohen's f, Hedges' g, Pearson's r or Fisher's transformation z, odds ratio or log odds, or eta squared effect size.") (license license:gpl3))) + +(define-public r-kknn + (package + (name "r-kknn") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "kknn" version)) + (sha256 + (base32 + "1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112")))) + (properties `((upstream-name . "kknn"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph) ("r-matrix" ,r-matrix))) + (home-page "https://github.com/KlausVigo/kknn") + (synopsis "Weighted k-Nearest Neighbors") + (description + "Weighted k-Nearest Neighbors for Classification, Regression and Clustering.") + (license license:gpl2+))) + +(define-public r-logspline + (package + (name "r-logspline") + (version "2.1.16") + (source + (origin + (method url-fetch) + (uri (cran-uri "logspline" version)) + (sha256 + (base32 + "12hkdi77vkic05p2vhap025xdcg1n53ywm239v18713pihdlj63l")))) + (properties `((upstream-name . "logspline"))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page + "https://cran.r-project.org/web/packages/logspline/") + (synopsis + "Routines for Logspline Density Estimation") + (description + "Contains routines for logspline density estimation. The function +@code{oldlogspline()} uses the same algorithm as the logspline package version +1.0.x; i.e. the Kooperberg and Stone (1992) algorithm (with an improved +interface). The recommended routine @code{logspline()} uses an algorithm from +@url{doi:10.1214/aos/1031594728,Stone et al (1997)}.") + (license license:asl2.0))) + +(define-public r-effects + (package + (name "r-effects") + (version "4.2-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "effects" version)) + (sha256 + (base32 + "0iks79rd4knrd81x4kvcpgpclr69l0m0v6sfla8k3wzkcnydycv8")))) + (properties `((upstream-name . "effects"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cardata" ,r-cardata) + ("r-colorspace" ,r-colorspace) + ("r-estimability" ,r-estimability) + ("r-insight" ,r-insight) + ("r-lattice" ,r-lattice) + ("r-lme4" ,r-lme4) + ("r-nnet" ,r-nnet) + ("r-survey" ,r-survey))) + (native-inputs + `(("r-knitr" ,r-knitr) + ("r-car", r-car))) + (home-page "https://www.r-project.org") + (synopsis + "Effect Displays for Linear, Generalized Linear, and Other Models") + (description + "Graphical and tabular effect displays, e.g., of interactions, for +various statistical models with linear predictors.") + (license license:gpl2+))) + +(define-public r-bayesfactor + (package + (name "r-bayesfactor") + (version "0.9.12-4.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "BayesFactor" version)) + (sha256 + (base32 + "1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g")))) + (properties `((upstream-name . "BayesFactor"))) + (build-system r-build-system) + (propagated-inputs + `(("r-coda" ,r-coda) + ("r-gtools" ,r-gtools) + ("r-hypergeo" ,r-hypergeo) + ("r-matrix" ,r-matrix) + ("r-matrixmodels" ,r-matrixmodels) + ("r-mvtnorm" ,r-mvtnorm) + ("r-pbapply" ,r-pbapply) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-stringr" ,r-stringr))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page + "https://richarddmorey.github.io/BayesFactor/") + (synopsis + "Computation of Bayes Factors for Common Designs") + (description + "This package provides a suite of functions for computing various Bayes +factors for simple designs, including contingency tables, one- and two-sample +designs, one-way designs, general ANOVA designs, and linear regression.") + (license license:gpl2))) |