diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 87 |
1 files changed, 31 insertions, 56 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3f0706665b..5b203d998d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2018 Alex Branham <alex.branham@gmail.com> ;;; Copyright © 2020 Tim Howes <timhowes@lavabit.com> ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1113,13 +1114,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.3.3") + (version "3.3.5") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "1k136k1sr6dq1xvx6gs6gzji6hbnnwnsb5qivsxrblfv90irxhj5")))) + (base32 "1si46bf9p09qzs208hqffwcb40305p361whmwhc1pwrsmx7jjxdh")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1379,13 +1380,13 @@ supported via Andre Simon's highlight package.") (define-public r-mime (package (name "r-mime") - (version "0.10") + (version "0.11") (source (origin (method url-fetch) (uri (cran-uri "mime" version)) (sha256 (base32 - "1xz37fizlx4w3g8kbim7vr5slqd6cmaq5sa0s4q7ayl1bahk6ckq")))) + "1h7fz0rqnp970r9q0d95qcxpxm9mb98rqhcdncx0w2qdkyj2fm11")))) (build-system r-build-system) (home-page "https://github.com/yihui/mime") (synopsis "R package to map filenames to MIME types") @@ -1596,13 +1597,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.0.2") + (version "3.0.4") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "03sbk36vrjhzfap6a9czxw93r7h06rh3mb01inbrhrh5r2pd00qq")))) + "0iqizv2gpv9fg766qv8hbkmc6c5i9xcfrmq9k5m2550p28zff2w3")))) (build-system r-build-system) (propagated-inputs `(("r-brio" ,r-brio) @@ -1706,13 +1707,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.6") + (version "1.0.7") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "01zsc9hn2wfvgphn8wcy7j4nvyq2qdl32008alnj0nsr34d3i308")))) + "0g8jsxclj9cgm7a2lyazy78sj62rbzw812lsw3fdsbz0pknkmznj")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) @@ -2024,19 +2025,18 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-16") + (version "1.7-17") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "142m70im8yd4q01q7z02y3ia0f66yh4ikdznv0ps6c7yyigs5mwv")))) + "0s9x29xscgfdk1cdk1hanmkrrgj9vibf5gvwlbx21mhjnf0dzngf")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) ("r-pixmap" ,r-pixmap) - ("r-progress" ,r-progress) ("r-sp" ,r-sp))) (home-page "http://pbil.univ-lyon1.fr/ADE-4") (synopsis "Multivariate data analysis and graphical display") @@ -2466,13 +2466,13 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "2.4.1") + (version "2.4.2") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "0jd4ph3z7shqyy8lw34i10qmhqr6z8ihqix96kkayjql315ccah6")))) + "01cg2ykg0av6z7bgl41njcxcii8vjj8ipch26xazp4yjai8abw3i")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -2736,13 +2736,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.8") + (version "2.9") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "0qk558n9fxvl0465384mbvkip9jqymjccdvwpxzm54jr0v56gprz")))) + (base32 "0s46x819zhf45k8qzpiwz79i5pn4gv99jfadywcjca3wka5szrbc")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -3286,13 +3286,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.1-1") + (version "4.1-2") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "0zpfq0m1y5zks5p9r28553ykywwrhrb3ds8m6b7sm6hj4n1c4csd")))) + (base32 "1kfd8kfhapx2cxw6qnkbs502c3kya4pd9qmf0mk76cdlq1c2paq6")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran) @@ -3639,13 +3639,13 @@ vignettes.") (define-public r-mvtnorm (package (name "r-mvtnorm") - (version "1.1-1") + (version "1.1-2") (source (origin (method url-fetch) (uri (cran-uri "mvtnorm" version)) (sha256 (base32 - "1pj51mi0g6ip7a2nhzc93yv9289kaayvspjvsbgbgarvx7axlrg9")))) + "05wh7mprf2sim2kxh3d72pdcmml6vbikzxavws1dq6mxwlsy2p7j")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -3856,13 +3856,13 @@ features present in other programming languages.") (define-public r-plotly (package (name "r-plotly") - (version "4.9.3") + (version "4.9.4.1") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "0801i2q7sw62x734d58h9p2fwpi1hirqj73gsg18pqkdv4b1lkfl")))) + "1q711c0lg0jmzrmcc2fhjy70ms49as7cakdbgbh2ij9s149fa7iq")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -4185,23 +4185,15 @@ Zurich, including many that are related to graphics.") (define-public r-gtools (package (name "r-gtools") - (version "3.8.2") + (version "3.9.2") (source (origin (method url-fetch) (uri (cran-uri "gtools" version)) (sha256 (base32 - "1pnwy412wvhhvnnx8qg6s9hrgcnsfhnfcpf2560ipipk845acfsh")))) + "0lx97yafrms2mjym8rhcq5586z7s1iqgy8qfm4px3xl1yn5qkc83")))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'make-deterministic - (lambda _ - (substitute* "R/checkReverseDependencies.R" - (("tempdir\\(\\)") "\"/tmp\"")) - #t))))) (home-page "https://cran.r-project.org/web/packages/gtools") (synopsis "Various R programming tools") (description @@ -5135,13 +5127,13 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.85") + (version "5.86") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "1y8sgl16yby1k7g23y6bdnfllwnxj3iik3fqp96iwm5jd8blb7q4")))) + (base32 "01fnp6ndh7npxj76xlynndacsgmcfr9kgh2waw0clx3mmwlwilbi")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -5191,14 +5183,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-27") + (version "1.1-27.1") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0px1wppmb6wibac4sismkf82q8870r6h267vxv0ql63qdk3r20zy")))) + "1i9f8kl2qj48j75dbn1vmwxz1xlbikdr7v2yq542w6dq74z8gyi5")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) @@ -5273,13 +5265,13 @@ Companion to Applied Regression, Third Edition, Sage.") (define-public r-car (package (name "r-car") - (version "3.0-10") + (version "3.0-11") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 - (base32 "1w95b7xm0bna3qm637pwyv4s7294ffz9dl153naprd79zv91dqqw")))) + (base32 "0b2l35656bi75hfvnjhzhlnrnbpjn0vv7nvny8gn65gm0rr94b5k")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) @@ -5732,31 +5724,14 @@ to any arbitrary string. In this case, it is up to you to set valid values.") (define-public python-rpy2 (package (name "python-rpy2") - (version "3.3.5") + (version "3.4.5") (source (origin (method url-fetch) (uri (pypi-uri "rpy2" version)) (sha256 (base32 - "1bs36rds5fq8821l5q85q2b25161rs9ppw5c26x0hjwj487gpcfj")) - ;; These patches should be removed with the next release. - (patches - (list - (origin - (method url-fetch) - (uri "https://github.com/rpy2/rpy2/commit/04c57598f00145d868ea8da31ac1b1e7c49f7570.patch") - (file-name "python-rpy2-fix-test-failure.patch") - (sha256 - (base32 - "1lqd3yxjfx1rxrybcmnapy0r6ambg9myrb98q4nlfhpxanwfdbbh"))) - (origin - (method url-fetch) - (uri "https://github.com/rpy2/rpy2/commit/685f67d0a6b47ea80e718116a10755019446aef7.patch") - (file-name "python-rpy2-r-console-test-fix.patch") - (sha256 - (base32 - "18wpvfaa4c13d44cb4sw88c3c7403xdy5m8h82wfq8fjmcq3cmzn"))))))) + "1cysswxr5glrdblyl2zsmywcj7xhxn3wmyihxinrz9gm8gmaacax")))) (build-system python-build-system) (arguments '(#:phases |