diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 137 |
1 files changed, 89 insertions, 48 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3588cb459a..9acc16e359 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -17,6 +17,7 @@ ;;; Copyright © 2021 Lars-Dominik Braun <lars@6xq.net> ;;; Copyright © 2021 Frank Pursel <frank.pursel@gmail.com> ;;; Copyright © 2022 Simon Tournier <zimon.toutoune@gmail.com> +;;; Copyright © 2023 gemmaro <gemmaro.dev@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -48,6 +49,7 @@ #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module (guix build-system trivial) + #:use-module (guix build-system ruby) #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) @@ -82,6 +84,7 @@ #:use-module (gnu packages python-science) #:use-module (gnu packages python-xyz) #:use-module (gnu packages readline) + #:use-module (gnu packages ruby) #:use-module (gnu packages shells) #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) @@ -636,13 +639,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-lattice (package (name "r-lattice") - (version "0.20-45") + (version "0.21-8") (source (origin (method url-fetch) (uri (cran-uri "lattice" version)) (sha256 (base32 - "1b87fmyjzbg854vpi03my1p25n3d0bchhwsdm2frblxppn98sf12")))) + "0af3c0mk0s3gnpmg7xmd4hjjynwv4ym3iv4grjvcmrk28abxdlwa")))) (build-system r-build-system) (home-page "https://lattice.r-forge.r-project.org/") (synopsis "High-level data visualization system") @@ -656,14 +659,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.5-3") + (version "1.5-4") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "03g0zqkbaa1k52i0d0yyn7vclmg93hdqaid48sbc1ccpvi70ywjf")))) + "01kgnsx3m19varjfn7n0g48ml6yrwr3bnjhhd0h486ynjccvdkhm")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -1235,13 +1238,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.4.1") + (version "3.4.2") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "113d5khg0lswrbwasavl2l5jgpcd3h519mcb5iq2cq0dz4rw66q4")))) + (base32 "1jl3a9z668zjb2p2c01rxpgmjs5gc9gkxn8xqi7q8vrc1akhl8vh")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1299,14 +1302,14 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "0dji1iyf6x9vg6gjklzkb3x9vfydfi95idkvckj6208b1rwgwsj4")))) + "10rlx1ciyvh0ayic03kckv360idl9s1zyc2ar5lisns786c1hnns")))) (build-system r-build-system) (native-inputs (list pkg-config)) @@ -1317,7 +1320,6 @@ agnes cluster diagrams.") r-fontquiver r-gfonts r-htmltools - r-memoise r-rcpp r-systemfonts)) (home-page "https://cran.r-project.org/web/packages/gdtools") @@ -1787,14 +1789,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.2.0") + (version "3.2.1") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "12i9cshnj2lygadh03zjw1zn5dr13wspcrq2dprl5qrrr95z2bwg")))) + "0c916wl19wbhncv05hjzs2vmvvbcxlswjl6i232ygmkzal62v9v5")))) (build-system r-build-system) (propagated-inputs (list r-fansi @@ -1816,13 +1818,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "1msfp29lbddwdv8ibc2nkan0g1g4y4w5fws6802v6h6x95g57c4c")))) + "1xxvspk1nyns39dp2fqvxbvvnkkz4rcgmhrcrznr3h1qpayj9p6z")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1853,14 +1855,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "2.3.1") + (version "2.3.2") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "0a5cnh0fr81mak9ccqr91nsjqlxsnf6a2lmwrsgv7g1sjag0b4p1")))) + "1b3zf2ai4kp96wd6i4jg9b3n37bwbw7lfvxvs1i1kcn6brch1p0d")))) (build-system r-build-system) (propagated-inputs (list r-blob @@ -2649,17 +2651,17 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "1vdx08irnh8q5232hriv47hh88hc55nbbrff7y6zbainff2akrhy")))) + "10h2k5j97fggq3hc0qzxv1q9821y21m326v3x99zsvpl1b3g89p6")))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis r-lifecycle r-pkgconfig r-rlang r-vctrs)) + (list r-lifecycle r-pkgconfig r-rlang r-vctrs)) (home-page "https://github.com/rstats-db/hms") (synopsis "Pretty time of day") (description @@ -2765,13 +2767,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.12.0.1.0") + (version "0.12.2.0.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "1spvsfzkzfw4l0igj2cx9ba3l2hwzqj180vndn4imdy0g4xibikk")))) + "1dvq5ng39ypz8vhqfzjnqhibvryshnxdfcsfy2jjyn0j7x0yi74g")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2857,18 +2859,19 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.20") + (version "2.21") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "178mc3dqm11y58k8jdhm1yi11bbl1h7bls9d8f94ngmlzjdhbxyp")))) + (base32 "0a5czn18clfnw0a9nd5v98ah4h47i32423s6jdf126ni4aj20ny2")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs (list r-bslib r-evaluate + r-fontawesome r-htmltools r-jquerylib r-jsonlite @@ -2890,13 +2893,13 @@ variety of formats.") (define-public r-gtable (package (name "r-gtable") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "gtable" version)) (sha256 (base32 - "1j162vkyvkyyz61smw36crgmd76jic17n9qfmn0cyvafzdyqyiwd")))) + "0fkv19h64cyxsadplvyzbpjliy9wlfg56hc8znvqg972g3cmi6ig")))) (properties `((upstream-name . "gtable"))) (build-system r-build-system) (propagated-inputs @@ -2979,13 +2982,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.3.0") + (version "2.3.1") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "0csx2zz4zlr11nrzcas1lzhzjb4ygv6nijg2jpkp5l4fs2hijbj4")))) + "1jil3wgfh1asfb9c4cr9qyr74wb9f87r7sa03kj187201hb3xlly")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -3009,13 +3012,13 @@ engine (version 3.8.8.2) is included.") (define-public r-rcurl (package (name "r-rcurl") - (version "1.98-1.10") + (version "1.98-1.12") (source (origin (method url-fetch) (uri (cran-uri "RCurl" version)) (sha256 (base32 - "1m7i0q9scrh2bfr0nqs029052kznhlv3siz9055pzdvgig7jnqjs")))) + "1ci6lsxm0f13yzw712gcbq23syl54x5llvhs2w1b8wwm9vqgx0qs")))) (properties `((upstream-name . "RCurl"))) (build-system r-build-system) (arguments @@ -3032,7 +3035,7 @@ if (certs != \"\") { .opts = merge.list(.opts, list(cainfo=certs)) } (native-inputs (list libxml2)) (inputs - (list curl zlib)) + (list curl)) (propagated-inputs (list r-bitops)) (home-page "https://www.omegahat.net/RCurl") @@ -3172,14 +3175,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "1.6-2") + (version "1.6-3") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "0livckkhci3w1x9xai2m0a30fj06qsks2qds7y5jr9vwx03jqg21")))) + "0x7k5ycbvnfqsygrcyaaxnl0060x6869b345xc697hhr9sfxb4ai")))) (build-system r-build-system) (propagated-inputs (list r-mass r-nlme)) (home-page "https://cran.r-project.org/web/packages/segmented") @@ -3801,13 +3804,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.1-6") + (version "4.1-7") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "0c3y9g3k0f0yclcffxzgfhfylb3py0iydhyspcjdrl44lb7cdi5y")))) + (base32 "1a7af2658z9fmx0rcdx401lj86q73qkvsvlfnrp2bw4xv43bd85k")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -4307,14 +4310,14 @@ and tidyr provides no margins or aggregation.") (define-public r-hexbin (package (name "r-hexbin") - (version "1.28.2") + (version "1.28.3") (source (origin (method url-fetch) (uri (cran-uri "hexbin" version)) (sha256 (base32 - "0bbhs5pwxh474w62sq6gqvih7habancxng9wd4f2rgn6lv9zhhb2")))) + "0pyy97bh9xf9hijg3iw1z4ri01571r1fx7xqm3fjkzx4q48kbcqf")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -5392,14 +5395,14 @@ can be efficiently implemented directly in the R language.") (define-public r-robustbase (package (name "r-robustbase") - (version "0.95-0") + (version "0.95-1") (source (origin (method url-fetch) (uri (cran-uri "robustbase" version)) (sha256 (base32 - "094pxwp78bmqyn6vncyzrazqxnn8abqsbzhlcq44avfz8qffmyjw")))) + "1sm37gqs35cvkacigsla8kzvpzjzsrgkabf58ymk9pzcndnx4b46")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -5840,13 +5843,13 @@ Companion to Applied Regression, Third Edition, Sage.") (define-public r-car (package (name "r-car") - (version "3.1-1") + (version "3.1-2") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 - (base32 "1g6jdcxl2aig6zirdn3k5l48sjmpljzy1aadnlr6mr6pxqamiicg")))) + (base32 "1j3l8r3j05769gdfrqz0n38xviq6pww1cjrgdd0fkj3sjy8k89l9")))) (build-system r-build-system) (propagated-inputs (list r-abind @@ -5964,17 +5967,18 @@ first and second order derivatives.") (define-public r-sn (package (name "r-sn") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "sn" version)) (sha256 (base32 - "12s4g9rfrnijdil7bqw66ikj5k3w6bdnz6fsgqsp0bkfsap9nps9")))) + "1g92vwbg0kqnqpsgianid2r91334p5shi39hr26v2z6wj5nvbxpr")))) (build-system r-build-system) (propagated-inputs (list r-mnormt r-numderiv r-quantreg)) + (native-inputs (list r-r-rsp)) (home-page "http://azzalini.stat.unipd.it/SN") (synopsis "The skew-normal and skew-t distributions") (description @@ -5988,14 +5992,14 @@ multivariate case.") (define-public r-tclust (package (name "r-tclust") - (version "1.5-2") + (version "1.5-4") (source (origin (method url-fetch) (uri (cran-uri "tclust" version)) (sha256 (base32 - "12vg9q35srddjidrn3q955xybn6ldraya35s4955ypj61arp89j9")))) + "1a3i6kvfzc2d6rdf75w03n5172jihhqa8mvzcb4m8l0w6mgdlm9b")))) (build-system r-build-system) ;; These are all suggested packages, not build dependencies. (propagated-inputs @@ -6011,14 +6015,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).") (define-public r-ranger (package (name "r-ranger") - (version "0.14.1") + (version "0.15.1") (source (origin (method url-fetch) (uri (cran-uri "ranger" version)) (sha256 (base32 - "06zf5mi6yfgb68m6m83k01r4ikj5nldrvrbh3jqwz8axalfl16ax")))) + "0bibv9xf6w8k8nsc13f2yd4kx99aq0i758h3wfh089szgkpdjrad")))) (build-system r-build-system) (propagated-inputs (list r-rcpp r-matrix r-rcppeigen)) @@ -7356,16 +7360,16 @@ Neyman, 1936; cf. Spiller et al., 2012), etc.") (define-public r-mumin (package (name "r-mumin") - (version "1.47.1") + (version "1.47.5") (source (origin (method url-fetch) (uri (cran-uri "MuMIn" version)) (sha256 (base32 - "1xhsc9hmx2b3zqyvpjs64rs90ccrfcsglrq2mhh85mgplsnva8qj")))) + "0xqasb79lmdhff25zalzrpjwv6qs9qnxr54ypnqjjgshi96mbwvg")))) (properties `((upstream-name . "MuMIn"))) (build-system r-build-system) - (propagated-inputs (list r-matrix r-nlme)) + (propagated-inputs (list r-insight r-matrix r-nlme)) (home-page "https://cran.r-project.org/package=MuMIn") (synopsis "Multi-Model Inference") (description @@ -7375,3 +7379,40 @@ model inclusion. Model parameter and prediction averaging based on model weights derived from information criteria (AICc and alike) or custom model weighting schemes.") (license license:gpl2))) + +(define-public ruby-enumerable-statistics + (package + (name "ruby-enumerable-statistics") + (version "2.0.7") + ;; Source at RubyGems.org doesn't have tests. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mrkn/enumerable-statistics.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1a8k2dvm1v0g6hcrbnzy0f7d63hdmpmldfdkl8wr32nbl05xnifa")) + (modules '((guix build utils))) + (snippet `(begin + (substitute* "enumerable-statistics.gemspec" + ;; benchmark-driver gem is used for + ;; performance benchmarking, and isn't + ;; needed for tests. + (("spec.add_development_dependency \"benchmark-driver\"\n") + "")))))) + (build-system ruby-build-system) + (native-inputs (list bundler + ruby-rake + ruby-rake-compiler + ruby-rspec + ruby-test-unit + ruby-fuubar + ruby-yard)) + (synopsis "Library which provides statistics features for Enumerable") + (description + "@code{Enumerable::Statistics} provides some methods to calculate +statistical summary in arrays and enumerables.") + (home-page "https://github.com/mrkn/enumerable-statistics") + (license license:expat))) |