diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 62fd1132da..792fc68a7e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4507,3 +4507,44 @@ short genomic reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.") (license license:gpl2))) + +(define-public r-rqc + (package + (name "r-rqc") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rqc" version)) + (sha256 + (base32 + "09kyn5nc2fqfdm3q07h0x2jyh24vsq5sxxm63ir1lvv250lmal4g")))) + (properties `((upstream-name . "Rqc"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biocstyle" ,r-biocstyle) + ("r-biostrings" ,r-biostrings) + ("r-biovizbase" ,r-biovizbase) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicfiles" ,r-genomicfiles) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-knitr" ,r-knitr) + ("r-markdown" ,r-markdown) + ("r-plyr" ,r-plyr) + ("r-rcpp" ,r-rcpp) + ("r-reshape2" ,r-reshape2) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors) + ("r-shiny" ,r-shiny) + ("r-shortread" ,r-shortread))) + (home-page "https://github.com/labbcb/Rqc") + (synopsis "Quality control tool for high-throughput sequencing data") + (description + "Rqc is an optimized tool designed for quality control and assessment of +high-throughput sequencing data. It performs parallel processing of entire +files and produces a report which contains a set of high-resolution +graphics.") + (license license:gpl2+))) |