diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 8 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 887f6cc99b..250deb9b6b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> +;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -2507,16 +2508,13 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") (define-public python2-pbcore (package (name "python2-pbcore") - (version "0.9.3") + (version "1.2.8") (source (origin (method url-fetch) - (uri (string-append - "https://github.com/PacificBiosciences/pbcore/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (uri (pypi-uri "pbcore" version)) (sha256 (base32 - "1z46rwjac93jm87cbj2zgjg6qvsgs65140wkbbxsvxps7ai4pm09")))) + "02pfn5raa3zf739672bg0dkx7z3j2c4nx7vmpfjqy5b12jrqpymk")))) (build-system python-build-system) (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7 (inputs @@ -2525,7 +2523,10 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") ("python-pysam" ,python2-pysam) ("python-h5py" ,python2-h5py))) (native-inputs - `(("python-setuptools" ,python2-setuptools))) + `(("python-docutils" ,python2-docutils) + ("python-nose" ,python2-nose) + ("python-setuptools" ,python2-setuptools) + ("python-sphinx" ,python2-sphinx))) (home-page "http://pacificbiosciences.github.io/pbcore/") (synopsis "Library for reading and writing PacBio data files") (description |