diff options
Diffstat (limited to 'gnu/packages')
197 files changed, 12923 insertions, 5163 deletions
diff --git a/gnu/packages/acl.scm b/gnu/packages/acl.scm index be4b079b04..abeafeef88 100644 --- a/gnu/packages/acl.scm +++ b/gnu/packages/acl.scm @@ -6,6 +6,7 @@ ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2019 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2021 Lars-Dominik Braun <ldb@leibniz-psychology.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -26,13 +27,15 @@ #:use-module (guix licenses) #:use-module (gnu packages attr) #:use-module (gnu packages base) + #:use-module (gnu packages check) #:use-module (gnu packages hurd) #:use-module (gnu packages gettext) #:use-module (gnu packages perl) #:use-module (guix packages) #:use-module (guix download) #:use-module (gnu packages) - #:use-module (guix build-system gnu)) + #:use-module (guix build-system gnu) + #:use-module (guix build-system python)) (define-public acl (package @@ -93,3 +96,41 @@ (description "Library and tools for manipulating access control lists.") (license (list gpl2+ lgpl2.1+)))) + +(define-public python-pylibacl + (package + (name "python-pylibacl") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pylibacl" version)) + (sha256 + (base32 + "1zyrk2m20p5b6bdwxhrwib273i6i71zyr5hzssbxfqis5qra9848")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-tests + (lambda* (#:key outputs inputs #:allow-other-keys) + ;; These tests operate on real files, but our tempfs does not support + ;; ACLs + (substitute* "tests/test_acls.py" + (("( *)def test_applyto(_extended(_mixed)?)?" match indent) + (string-append indent "@pytest.mark.skip(reason=\"guix\")\n" match))) + #t)) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "tests")) + #t))))) + (inputs `(("acl" ,acl))) + (native-inputs `(("python-pytest" ,python-pytest))) + (home-page "https://pylibacl.k1024.org/") + (synopsis "POSIX.1e ACLs for python") + (description "Python 3.4+ extension module that allows you to manipulate +the POSIX.1e Access Control Lists present in some OS/file-systems +combinations.") + (license lgpl2.1+))) diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 8be0875c1b..4be6250cbd 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -40,6 +40,7 @@ ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2021 qblade <qblade@protonmail.com> ;;; Copyright © 2021 Hyunseok Kim <lasnesne@lagunposprasihopre.org> +;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -330,6 +331,38 @@ interface and is based on GNU Guile.") #t))) ,@(package-arguments shepherd))))) +(define-public cfm + (package + (name "cfm") + (version "0.6.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WillEccles/cfm") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "14gapia902f29wa4dlrrj8jcwcff9bfvyhjccw9ddy2gxx2g8wmr")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; no test suite + #:make-flags + (list (string-append "CC=" ,(cc-for-target)) + (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + ;; Keeping xdg-open optional avoids a size increase of 293%. + (delete 'configure)))) ; no configure script + (home-page "https://eccles.dev/cfm/") + (synopsis + "Simple terminal file manager with @command{vi}-inspired key bindings") + (description + "The Cactus File Manager (@command{cfm}) helps you manage your files +visually from a text terminal. It aims to be simple and fast, with key bindings +inspired by @command{vi}.") + (license license:mpl2.0))) + (define-public cloud-utils (package (name "cloud-utils") @@ -463,7 +496,7 @@ graphs and can export its output to different formats.") (define-public facter (package (name "facter") - (version "4.0.51") + (version "4.0.52") (source (origin (method git-fetch) (uri (git-reference @@ -472,7 +505,7 @@ graphs and can export its output to different formats.") (file-name (git-file-name name version)) (sha256 (base32 - "1s98rq2wjmh8bqdfdibvfp9j2ynd97k0c4hairryrzl9nna3j542")))) + "05j4q87sak1f1isj7ngzr59h3j3xskfwjjwfv0xd7lhwcaxg3a3c")))) (build-system ruby-build-system) (arguments `(#:phases @@ -1027,6 +1060,36 @@ recursive runs on the generated subnets. (also IPv6) @end itemize\n") (license license:bsd-3))) +(define-public prips + (package + (name "prips") + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://devel.ringlet.net/files/sys/" + name "/" name "-" version ".tar.xz")) + (sha256 + (base32 "1a33vbl4w603mk6mm5r3vhk87fy3dfk5wdpch0yd3ncbkg3fmvqn")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags (list (string-append "CC=" ,(cc-for-target))) + #:test-target "test" + #:phases (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "prips" + (string-append out "/bin")))))))) + (native-inputs `(("perl-test-harness" ,perl-test-harness))) + (synopsis "Tool that prints the IP addresses in a given range") + (description "Prips can be used to print all of the IP addresses in + a given range. This allows the enhancement of tools only work + on one host at a time (e.g. whois).") + (home-page "https://devel.ringlet.net/sysutils/prips/") + (license license:gpl2+))) + (define-public alive (package (name "alive") @@ -1663,7 +1726,8 @@ features of sudo with a fraction of the codebase.") (string-append "#" line))) #t)) (patches - (search-patches "wpa-supplicant-CVE-2021-27803.patch")))) + (search-patches "wpa-supplicant-CVE-2021-27803.patch" + "wpa-supplicant-CVE-2021-30004.patch")))) (build-system gnu-build-system) (arguments `(#:phases @@ -1829,7 +1893,8 @@ command.") (base32 "1mrbvg4v7vm7mknf0n29mf88k3s4a4qj6r4d51wq8hmjj1m7s7c8")) (patches - (search-patches "wpa-supplicant-CVE-2021-27803.patch")))) + (search-patches "wpa-supplicant-CVE-2021-27803.patch" + "wpa-supplicant-CVE-2021-30004.patch")))) (build-system gnu-build-system) (arguments `(#:phases @@ -1966,7 +2031,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).") (define-public acpica (package (name "acpica") - (version "20210105") + (version "20210331") (source (origin (method url-fetch) (uri (string-append @@ -1974,7 +2039,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).") version ".tar.gz")) (sha256 (base32 - "1gi7qzfywg118g5nlqn5lawxk25pg2sz01gmbz40vvmikks4ri9r")))) + "1h98pvc9iy1c49cid0ppjwk5zsy2m1xbvfqb72pkwkrd4rn35arx")))) (build-system gnu-build-system) (native-inputs `(("flex" ,flex) ("bison" ,bison))) @@ -2928,13 +2993,13 @@ a new command using the matched rule, and runs it.") (define-public di (package (name "di") - (version "4.49") + (version "4.50") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/diskinfo-di/di-" version ".tar.gz")) (sha256 - (base32 "1y38jhp2bpwbwzdzjlhgfqc7bxxz9cwapxd61799zjf54jkslkf0")))) + (base32 "0aj9ldkvmj8fmrk685vd2gagz0q8lwsn2nfbx6r6mza94mn8pw42")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; obscure test failures @@ -3506,14 +3571,14 @@ information tool.") (define-public nnn (package (name "nnn") - (version "3.5") + (version "3.6") (source (origin (method url-fetch) (uri (string-append "https://github.com/jarun/nnn/releases/download/v" version "/nnn-v" version ".tar.gz")) (sha256 - (base32 "1ww18vvfjkvi36rcamw8kpix4bhk71w5bw9kmnh158crah1x8dp6")))) + (base32 "1dbq16cdipij5ws59ab3alfmxli7n4wx28ip7gsyq8ncxg598l47")))) (build-system gnu-build-system) (inputs `(("ncurses" ,ncurses) @@ -4105,14 +4170,14 @@ tcpdump and snoop.") (define-public pam-mount (package (name "pam-mount") - (version "2.17") + (version "2.18") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/pam-mount/pam_mount/" "pam_mount-" version ".tar.xz")) (sha256 - (base32 "1q2n6a2ah6nghdn8i6ad2wj247njwb5nx48cggxknaa6lqxylidy")))) + (base32 "0832nh2qf9pisgwnbgx6hkylx5d7i416l19y3ly4ifv7k1p7mxqa")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl) @@ -4124,7 +4189,7 @@ tcpdump and snoop.") ("linux-pam" ,linux-pam) ("lvm2" ,lvm2) ("openssl" ,openssl) - ("pcre" ,pcre) + ("pcre2" ,pcre2) ("libmount" ,util-linux "lib") ("util-linux" ,util-linux))) (arguments @@ -4288,7 +4353,7 @@ entries, providing commands to add, remove, comment, and search.") (define-public nmrpflash (package (name "nmrpflash") - (version "0.9.14") + (version "0.9.15") (source (origin (method git-fetch) @@ -4297,7 +4362,7 @@ entries, providing commands to add, remove, comment, and search.") (url "https://github.com/jclehner/nmrpflash") (commit (string-append "v" version)))) (sha256 - (base32 "1fdjrxhjs96rdclbkld57xarf592slhkp79h46z833npxpn12ck1")) + (base32 "0ssfls1sfh8w748qsnkfgndlpw395100x2yynzbk5jd56scxvp20")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (native-inputs @@ -4503,7 +4568,7 @@ the XMODEM/YMODEM/ZMODEM file transfer protocols.") (define-public nq (package (name "nq") - (version "0.3.1") + (version "0.4") (source (origin (method git-fetch) @@ -4512,7 +4577,7 @@ the XMODEM/YMODEM/ZMODEM file transfer protocols.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1db96ykz35r273jyhf7cdknqk4p2jj9l8gbz7pjy1hq4pb6ffk99")))) + (base32 "0sdamjzvmf6cxhjmd1rjvn7zm6k10fp5n6vabyxd3yl30cgrxw2i")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl))) diff --git a/gnu/packages/aidc.scm b/gnu/packages/aidc.scm index 6628a8ead3..d1b63de736 100644 --- a/gnu/packages/aidc.scm +++ b/gnu/packages/aidc.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014 John Darringon <jmd@gnu.org> -;;; Copyright © 2016, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net> @@ -108,16 +108,25 @@ formats.") (define-public qrencode (package (name "qrencode") - (version "4.0.2") + (version "4.1.1") (source (origin (method url-fetch) - (uri (string-append - "https://fukuchi.org/works/qrencode/qrencode-" version - ".tar.bz2")) + (uri (string-append "https://fukuchi.org/works/qrencode/" + "qrencode-" version ".tar.bz2")) (sha256 (base32 - "1d2q5d3v8g3hsi3h5jq4n177bjhf3kawms09immw7p187f6jgjy9")))) + "08v9d8jn26bva2a8x4hghq3mgl8zcid393iqkidwyhc05xrxjmg4")))) (build-system gnu-build-system) + (arguments + `(#:configure-flags '("--with-tests") + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion "tests" + (invoke "./test_basic.sh"))) + #t))))) (inputs `(("libpng" ,libpng))) (native-inputs `(("pkg-config" ,pkg-config))) (synopsis "Encode data into a QR Code symbol") diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 20602bdf2a..c352532677 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017, 2020 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> @@ -563,14 +563,14 @@ these types and other mathematical functions.") (define-public ntl (package (name "ntl") - (version "11.4.3") + (version "11.4.4") (source (origin (method url-fetch) (uri (string-append "https://shoup.net/ntl/ntl-" version ".tar.gz")) (sha256 (base32 - "1lisp3064rch3jaa2wrhy1s9kll7i3ka3d0y6lj6l3l4ckfcrhdp")) + "1nr1h27j2gdz6badzz9lk2pknxhdijqdxqhd3haryh0sw616wzwx")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/antivirus.scm b/gnu/packages/antivirus.scm index 29763f3452..9bcfe52126 100644 --- a/gnu/packages/antivirus.scm +++ b/gnu/packages/antivirus.scm @@ -44,14 +44,14 @@ (define-public clamav (package (name "clamav") - (version "0.103.1") + (version "0.103.2") (source (origin (method url-fetch) (uri (string-append "https://www.clamav.net/downloads/production/" "clamav-" version ".tar.gz")) (sha256 (base32 - "0mz2aq8dh4i7mh59r71scczgyjbsj8l0a51nkwxsys5ji5xw823k")) + "1lhv4xw89sszi519agvc9mi6jz5aiivm9yr6lciy8qk2csnd1dfl")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/assembly.scm b/gnu/packages/assembly.scm index a54421cfab..cef5075d3c 100644 --- a/gnu/packages/assembly.scm +++ b/gnu/packages/assembly.scm @@ -343,7 +343,7 @@ package for the Game Boy and Game Boy Color. It consists of: (define-public wla-dx (package (name "wla-dx") - (version "9.11") + (version "9.12") (source (origin (method git-fetch) (uri (git-reference @@ -352,7 +352,7 @@ package for the Game Boy and Game Boy Color. It consists of: (file-name (git-file-name name version)) (sha256 (base32 - "0i8pxvyaih79pqnyvqyqd9rwdid91pna76cap0k1n5zhg8xswf2f")))) + "1wlbqv2rgk9q6m9an1mi0i29250zl8lw7zipki2bbi9mczpyczli")))) (build-system cmake-build-system) (native-inputs `(("sphinx" ,python-sphinx))) ; to generate man pages diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 6105ef2590..4660e141a4 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -118,7 +118,7 @@ for reading and writing.") (define-public erfa (package (name "erfa") - (version "1.7.2") + (version "1.7.3") (source (origin (method git-fetch) @@ -127,7 +127,7 @@ for reading and writing.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1vsqwvzlk7r8q7nwyb7i710blcfdl5kwcm2va9km07a820nsp84a")))) + (base32 "0nh12dr7gk4ki55lz95pkm4fpf7kazirra3zax9pab6v4qql4hlw")))) (build-system gnu-build-system) (native-inputs `(("automake" ,automake) @@ -137,8 +137,10 @@ for reading and writing.") (home-page "https://github.com/liberfa/erfa") (synopsis "Essential Routines for Fundamental Astronomy") (description - "ERFA is a C library containing key algorithms for astronomy, and is based -on the SOFA library published by the International Astronomical Union (IAU).") + "The @acronym{ERFA, Essential Routines for Fundamental Astronomy} C library +contains key algorithms for astronomy, and is based on the @acronym{SOFA, +Standards of Fundamental Astronomy} library published by the @acronym{IAU, +International Astronomical Union}.") (license license:bsd-3))) (define-public eye @@ -399,7 +401,7 @@ deconvolution). Such post-processing is not performed by Stackistry.") (define-public stellarium (package (name "stellarium") - (version "0.20.4") + (version "0.21.0") (source (origin (method url-fetch) @@ -407,7 +409,7 @@ deconvolution). Such post-processing is not performed by Stackistry.") "/releases/download/v" version "/stellarium-" version ".tar.gz")) (sha256 - (base32 "1253zlr0mi4kdbj119spxk7spg4rkahb4rlpd0hz1d81mnv3n0v3")))) + (base32 "04vg2asj9gygwnrs32scqc8192ln2lyqa9v7cjqk8zd4frkwszwp")))) (build-system cmake-build-system) (inputs `(("qtbase" ,qtbase) @@ -1009,13 +1011,13 @@ astronomical images, especially when there is no WCS information available.") (define-public python-skyfield (package (name "python-skyfield") - (version "1.36") + (version "1.38") (source (origin (method url-fetch) (uri (pypi-uri "skyfield" version)) (sha256 - (base32 "1dm1327a4qv3klj9blrvddbhl72v1fqz52ym9km8qjj9vdkpywh6")))) + (base32 "1qi1l8qn6irdv6w41qq30s2yjwak7h6ayywr1pry9gwcm2c25bv5")))) (build-system python-build-system) (arguments ;; NOTE: (Sharlatan-20210207T163305+0000): tests depend on custom test diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index 0cc3393361..30e38cef70 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -18,7 +18,7 @@ ;;; Copyright © 2018 Thorsten Wilms <t_w_@freenet.de> ;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2018 Brendan Tildesley <mail@brendan.scot> -;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2019, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019, 2021 Leo Famulari <leo@famulari.name> ;;; Copyright © 2019 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2019 Arun Isaac <arunisaac@systemreboot.net> @@ -78,6 +78,7 @@ #:use-module (gnu packages gnome) #:use-module (gnu packages gnunet) ; libmicrohttpd #:use-module (gnu packages gperf) + #:use-module (gnu packages gstreamer) #:use-module (gnu packages gtk) #:use-module (gnu packages guile) #:use-module (gnu packages icu4c) @@ -567,11 +568,11 @@ streams from live audio.") (define-public ardour (package (name "ardour") - (version "5.12") + (version "6.6") (source (origin (method git-fetch) (uri (git-reference - (url "https://git.ardour.org/ardour/ardour.git") + (url "git://git.ardour.org/ardour/ardour.git") (commit version))) (snippet ;; Ardour expects this file to exist at build time. The revision @@ -581,15 +582,16 @@ streams from live audio.") "libs/ardour/revision.cc" (lambda (port) (format port ,(string-append "#include \"ardour/revision.h\" -namespace ARDOUR { const char* revision = \"" version "\" ; }")) +namespace ARDOUR { const char* revision = \"" version "\" ; const char* date = \"\"; }")) #t))) (sha256 (base32 - "0mla5lm51ryikc2rrk53max2m7a5ds6i1ai921l2h95wrha45nkr")) + "0k5rxh8b3d8si3lj01gfqj0pmd448d8sj4asnb205mwhwbfgn0cp")) (file-name (string-append name "-" version)))) (build-system waf-build-system) (arguments `(#:configure-flags '("--cxx11" ; required by gtkmm + "--optimize" "--no-phone-home" ; don't contact ardour.org "--freedesktop" ; build .desktop file "--test") ; build unit tests @@ -619,8 +621,7 @@ namespace ARDOUR { const char* revision = \"" version "\" ; }")) ver ".appdata.xml") (string-append share "/appdata/"))) #t))) - #:test-target "test" - #:python ,python-2)) + #:test-target "test")) (inputs `(("alsa-lib" ,alsa-lib) ("atkmm" ,atkmm) @@ -628,6 +629,7 @@ namespace ARDOUR { const char* revision = \"" version "\" ; }")) ("boost" ,boost) ("cairomm" ,cairomm) ("curl" ,curl) + ("dbus" ,dbus) ("eudev" ,eudev) ("fftw" ,fftw) ("fftwf" ,fftwf) @@ -644,17 +646,21 @@ namespace ARDOUR { const char* revision = \"" version "\" ; }")) ("libsndfile" ,libsndfile) ("libusb" ,libusb) ("libvorbis" ,libvorbis) + ("libwebsockets" ,libwebsockets) ("libxml2" ,libxml2) ("lilv" ,lilv) ("lrdf" ,lrdf) ("lv2" ,lv2) + ("openssl" ,openssl) ; Required by libwebsockets. ("pangomm" ,pangomm) ("python-rdflib" ,python-rdflib) + ("pulseaudio" ,pulseaudio) ("readline" ,readline) ("redland" ,redland) ("rubberband" ,rubberband) ("serd" ,serd) ("sord" ,sord) + ("soundtouch" ,soundtouch) ("sratom" ,sratom) ("suil" ,suil) ("taglib" ,taglib) @@ -3259,31 +3265,26 @@ stretching and pitch scaling of audio. This package contains the library.") (define-public wavpack (package (name "wavpack") - (version "5.3.2") + (version "5.4.0") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/dbry/WavPack") - (commit "e4e8d191e8dd74cbdbeaef3232c16a7ef517e68d"))) + (method url-fetch) + (uri (string-append "https://github.com/dbry/WavPack/releases/download/" + version "/wavpack-" version ".tar.xz")) (sha256 - (base32 "1zj8svk6giy1abq3940sz32ygz7zldppxl47852zgn5wfm3l2spx")) - (file-name (git-file-name name version)))) + (base32 "0ycbqarw25x7208jilh86vwwiqklr7f617jps9mllqc659mnmpjb")))) (build-system gnu-build-system) (arguments '(#:configure-flags - (list "--disable-static") + (list "--disable-static" + "--enable-tests") #:phases (modify-phases %standard-phases - (replace 'bootstrap - ;; Running ./autogen.sh would cause premature configuration. - (lambda _ - (invoke "autoreconf" "-vif") + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "./cli/wvtest" "--default" "--short")) #t))))) - (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ("libtool" ,libtool))) (home-page "https://www.wavpack.com/") (synopsis "Hybrid lossless audio codec") (description @@ -4093,7 +4094,7 @@ kbps at 24 bit/96 kHz.") (home-page "https://github.com/Arkq/bluez-alsa") (synopsis "Bluetooth ALSA backend") (description "This project is a rebirth of a direct integration between -Bluez and ALSA. Since Bluez >= 5, the build-in integration has been removed +Bluez and ALSA. Since Bluez >= 5, the built-in integration has been removed in favor of 3rd party audio applications. From now on, Bluez acts as a middleware between an audio application, which implements Bluetooth audio profile, and a Bluetooth audio device. BlueALSA registers all known Bluetooth @@ -4260,7 +4261,7 @@ the following features: (home-page "https://github.com/werman/noise-suppression-for-voice") (synopsis "Speech denoise LV2 plugin based on Xiph's RNNoise library") (description "RNNoise is a library that uses deep learning to apply -noise supression to audio sources with voice presence. This package provides +noise suppression to audio sources with voice presence. This package provides an LV2 audio plugin.") (license license:lgpl3+)))) @@ -4465,7 +4466,7 @@ library.") (define-public faudio (package (name "faudio") - (version "19.11") + (version "21.04") (source (origin (method git-fetch) @@ -4474,19 +4475,24 @@ library.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0ckpr6ffz8ssfh1y850dhip5s5jv0j6n90qz5yx1v9d6gpwf08rp")))) + (base32 "1g3zp7igh4ns31sqnxddxqhgibijngkbcqqsj23i9d1lah6k4747")))) (arguments '(#:tests? #f ; No tests. - #:configure-flags '("-DFFMPEG=ON"))) + #:configure-flags '("-DGSTREAMER=ON"))) (build-system cmake-build-system) (native-inputs `(("pkg-config" ,pkg-config))) - (inputs `(("ffmpeg" ,ffmpeg) + (inputs `(("gstreamer" ,gstreamer) + ("gst-plugins-base" ,gst-plugins-base) ("sdl2" ,sdl2))) (home-page "https://github.com/FNA-XNA/FAudio") (synopsis "XAudio reimplementation") (description "FAudio is an XAudio reimplementation that focuses solely on developing fully accurate DirectX Audio runtime libraries.") - (license license:zlib))) + (license + (list license:zlib + ;; stb & utils/{ui,wav}common are dual-licenced under either of: + license:expat + license:public-domain)))) (define-public gnaural (package @@ -4922,7 +4928,7 @@ minimum.") (define-public libinstpatch (package (name "libinstpatch") - (version "1.1.5") + (version "1.1.6") (source (origin (method git-fetch) @@ -4931,7 +4937,7 @@ minimum.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0psx4hc5yksfd3k2xqsc7c8lbz2d4yybikyddyd9hlkhq979cmjb")))) + (base32 "1w3nk0vvd1cxic70n45zjip0bdsrja969myvyvkhq3ngbarbykir")))) (build-system cmake-build-system) (arguments `(#:tests? #f)) ;there are no tests @@ -5134,14 +5140,14 @@ while still staying in time.") (define-public butt (package (name "butt") - (version "0.1.28") + (version "0.1.29") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/butt/butt/butt-" version "/butt-" version ".tar.gz")) (sha256 (base32 - "1rbp4v6dlyapld6y4aqbpfmcaiafa06f2zqd1rhk4r3ld3bndafm")))) + "0nbz0z4d7krvhmnwn10594gwc61gn2dlb5fazmynjfisrfdswqlg")))) (build-system gnu-build-system) (arguments `(#:phases @@ -5178,7 +5184,7 @@ while still staying in time.") version "_manual.pdf")) (sha256 (base32 - "04wz2sqhk22h9gymwh5r6kp6sxc994mia8rg9lwpmy1r18w4pvsl")))))) + "1hhgdhdg5s86hjcbwh856gcd3kcch0i5xgi3i3v02zz3xmzl7gg3")))))) (home-page "https://danielnoethen.de/butt/") (synopsis "Audio streaming tool") (description "Butt is a tool to stream audio to a ShoutCast or diff --git a/gnu/packages/autotools.scm b/gnu/packages/autotools.scm index ca28801944..8c593c5208 100644 --- a/gnu/packages/autotools.scm +++ b/gnu/packages/autotools.scm @@ -545,7 +545,7 @@ complexity of working with shared libraries across platforms.") (native-inputs `(("help2man" ,help2man))) (home-page "https://savannah.gnu.org/projects/config") - (synopsis "Ubiquitious config.guess and config.sub scripts") + (synopsis "Ubiquitous config.guess and config.sub scripts") (description "The `config.guess' script tries to guess a canonical system triple, and `config.sub' validates and canonicalizes. These are used as part of configuration in nearly all GNU packages (and many others).") diff --git a/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf b/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf index 4836307163..189e4e16b4 100644 --- a/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf +++ b/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf @@ -8146,7 +8146,7 @@ CONFIG_HYPERV_BALLOON=m # CONFIG_XEN_BALLOON=y CONFIG_XEN_BALLOON_MEMORY_HOTPLUG=y -CONFIG_XEN_BALLOON_MEMORY_HOTPLUG_LIMIT=512 +CONFIG_XEN_MEMORY_HOTPLUG_LIMIT=512 CONFIG_XEN_SCRUB_PAGES_DEFAULT=y CONFIG_XEN_DEV_EVTCHN=m CONFIG_XEN_BACKEND=y diff --git a/gnu/packages/aux-files/linux-libre/5.11-x86_64.conf b/gnu/packages/aux-files/linux-libre/5.11-x86_64.conf index 178bb220d7..99d3cf74e2 100644 --- a/gnu/packages/aux-files/linux-libre/5.11-x86_64.conf +++ b/gnu/packages/aux-files/linux-libre/5.11-x86_64.conf @@ -8212,7 +8212,7 @@ CONFIG_HYPERV_BALLOON=m # CONFIG_XEN_BALLOON=y CONFIG_XEN_BALLOON_MEMORY_HOTPLUG=y -CONFIG_XEN_BALLOON_MEMORY_HOTPLUG_LIMIT=512 +CONFIG_XEN_MEMORY_HOTPLUG_LIMIT=512 CONFIG_XEN_SCRUB_PAGES_DEFAULT=y CONFIG_XEN_DEV_EVTCHN=m CONFIG_XEN_BACKEND=y diff --git a/gnu/packages/axoloti.scm b/gnu/packages/axoloti.scm index 3049051486..0b12e4fe29 100644 --- a/gnu/packages/axoloti.scm +++ b/gnu/packages/axoloti.scm @@ -147,18 +147,7 @@ (delete 'configure) (replace 'build ;; Build Axoloti firmware with cross-compiler - (lambda* (#:key inputs #:allow-other-keys) - (let* ((toolchain (assoc-ref inputs "cross-toolchain")) - (headers (string-append - toolchain - "/arm-none-eabi/include:" - toolchain - "/arm-none-eabi/include/arm-none-eabi/armv7e-m"))) - (setenv "CROSS_CPATH" headers) - (setenv "CROSS_CPLUS_INCLUDE_PATH" headers) - (setenv "CROSS_LIBRARY_PATH" - (string-append toolchain - "/arm-none-eabi/lib"))) + (lambda _ (with-directory-excursion "platform_linux" (invoke "sh" "compile_firmware.sh")))) (replace 'install diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm index ee1ab1bcad..d7aca1f37a 100644 --- a/gnu/packages/base.scm +++ b/gnu/packages/base.scm @@ -1236,7 +1236,9 @@ command.") (define-public tzdata (package (name "tzdata") - (version "2020f") + ;; This package should be kept in sync with python-pytz in (gnu packages + ;; time). + (version "2021a") (source (origin (method url-fetch) (uri (string-append @@ -1244,7 +1246,7 @@ command.") version ".tar.gz")) (sha256 (base32 - "10b8cr55x6ji14n3kqkn3avj1s9b79b8gszh81fxrrisij8k248j")))) + "022fn6gkmp7pamlgab04x0dm5hnyn2m2fcnyr3pvm36612xd5rrr")))) (build-system gnu-build-system) (arguments `(#:tests? #f @@ -1303,7 +1305,7 @@ command.") version ".tar.gz")) (sha256 (base32 - "1i998crd9fxdfhv4jd241j1arx0ng7j7cvczpmj4y5j5fwmfmvng")))))) + "1l02b0jiwp3fl0xd6227i69d26rmx3yrnq0ssq9vvdmm4jhvyipb")))))) (home-page "https://www.iana.org/time-zones") (synopsis "Database of current and historical time zones") (description "The Time Zone Database (often called tz or zoneinfo) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0bcd9a67cd..171736064c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -619,6 +619,32 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.") "This package exposes an annotation database generated from Ensembl.") (license license:artistic2.0))) +(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene + (package + (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene") + (version "3.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "TxDb.Dmelanogaster.UCSC.dm6.ensGene" + version 'annotation)) + (sha256 + (base32 + "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4")))) + (properties + `((upstream-name . "TxDb.Dmelanogaster.UCSC.dm6.ensGene"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-genomicfeatures" ,r-genomicfeatures))) + (home-page + "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGene") + (synopsis "Annotation package for TxDb object(s)") + (description + "This package exposes an annotation databases generated from UCSC by +exposing these as TxDb objects.") + (license license:artistic2.0))) + (define-public r-txdb-hsapiens-ucsc-hg19-knowngene (package (name "r-txdb-hsapiens-ucsc-hg19-knowngene") @@ -1087,7 +1113,7 @@ package @code{affy}.") (properties `((upstream-name . "gageData"))) (build-system r-build-system) (home-page "https://bioconductor.org/packages/gageData") - (synopsis "Auxillary data for gage package") + (synopsis "Auxiliary data for the gage package") (description "This is a supportive data package for the software package @code{gage}. However, the data supplied here are also useful for gene set or pathway @@ -1233,6 +1259,39 @@ data. In addition, provides numerous plotting functions for commonly used visualizations.") (license license:artistic2.0))) +(define-public r-delayedarray + (package + (name "r-delayedarray") + (version "0.16.3") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DelayedArray" version)) + (sha256 + (base32 + "0w1wppy6m2iv41852dscg3y19sq84ahdx3m7c2p2pxjcznmv6hys")))) + (properties + `((upstream-name . "DelayedArray"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-s4vectors" ,r-s4vectors) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-matrixgenerics" ,r-matrixgenerics))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/DelayedArray") + (synopsis "Delayed operations on array-like objects") + (description + "Wrapping an array-like object (typically an on-disk object) in a +@code{DelayedArray} object allows one to perform common array operations on it +without loading the object in memory. In order to reduce memory usage and +optimize performance, operations on the object are either delayed or executed +using a block processing mechanism. Note that this also works on in-memory +array-like objects like @code{DataFrame} objects (typically with Rle columns), +@code{Matrix} objects, and ordinary arrays and data frames.") + (license license:artistic2.0))) + (define-public r-bluster (package (name "r-bluster") @@ -1315,6 +1374,60 @@ naming and share the same rich and consistent \"Vector API\" as much as possible.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor. +(define-public r-absfiltergsea + (package + (name "r-absfiltergsea") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbsFilterGSEA" version)) + (sha256 + (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) + (properties `((upstream-name . "AbsFilterGSEA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-deseq" ,r-deseq) + ("r-limma" ,r-limma) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") + (synopsis "Improved false positive control of gene-permuting with absolute filtering") + (description + "This package provides a function that performs gene-permuting of a gene-set +enrichment analysis (GSEA) calculation with or without the absolute filtering. + Without filtering, users can perform (original) two-tailed or one-tailed +absolute GSEA.") + (license license:gpl2))) + +;; This is a CRAN package, but it depends on r-biobase from Bioconductor. +(define-public r-bisquerna + (package + (name "r-bisquerna") + (version "1.0.4") + (source (origin + (method url-fetch) + (uri (cran-uri "BisqueRNA" version)) + (sha256 + (base32 + "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2")))) + (properties `((upstream-name . "BisqueRNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-limsolve" ,r-limsolve))) + (home-page "https://www.biorxiv.org/content/10.1101/669911v1") + (synopsis "Decomposition of bulk expression with single-cell sequencing") + (description "This package provides tools to accurately estimate cell type +abundances from heterogeneous bulk expression. A reference-based method +utilizes single-cell information to generate a signature matrix and +transformation of bulk expression for accurate regression based estimates. +A marker-based method utilizes known cell-specific marker genes to measure +relative abundances across samples.") + (license license:gpl3))) + ;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19 ;; from Bioconductor. (define-public r-deconstructsigs @@ -1559,6 +1672,35 @@ structure.") microarrays.") (license license:artistic2.0))) +(define-public r-annotationdbi + (package + (name "r-annotationdbi") + (version "1.52.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationDbi" version)) + (sha256 + (base32 + "0zqxgh3nx6y8ry12s2vss2f4axz5vpqxha1y4ifhhcx4zhpzsglr")))) + (properties + `((upstream-name . "AnnotationDbi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dbi" ,r-dbi) + ("r-iranges" ,r-iranges) + ("r-rsqlite" ,r-rsqlite) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/AnnotationDbi") + (synopsis "Annotation database interface") + (description + "This package provides user interface and database connection code for +annotation data packages using SQLite data storage.") + (license license:artistic2.0))) + (define-public r-annotationforge (package (name "r-annotationforge") @@ -1591,6 +1733,148 @@ microarrays.") databases. Packages produced are intended to be used with AnnotationDbi.") (license license:artistic2.0))) +(define-public r-biobase + (package + (name "r-biobase") + (version "2.50.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Biobase" version)) + (sha256 + (base32 + "11kgc4flywlm3i18603558l8ksv91c24vkc5fnnbcd375i2dhhd4")))) + (properties + `((upstream-name . "Biobase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics))) + (home-page "https://bioconductor.org/packages/Biobase") + (synopsis "Base functions for Bioconductor") + (description + "This package provides functions that are needed by many other packages +on Bioconductor or which replace R functions.") + (license license:artistic2.0))) + +(define-public r-biomart + (package + (name "r-biomart") + (version "2.46.3") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "biomaRt" version)) + (sha256 + (base32 + "0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7")))) + (properties + `((upstream-name . "biomaRt"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocfilecache" ,r-biocfilecache) + ("r-httr" ,r-httr) + ("r-openssl" ,r-openssl) + ("r-progress" ,r-progress) + ("r-rappdirs" ,r-rappdirs) + ("r-stringr" ,r-stringr) + ("r-xml" ,r-xml) + ("r-xml2" ,r-xml2))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/biomaRt") + (synopsis "Interface to BioMart databases") + (description + "biomaRt provides an interface to a growing collection of databases +implementing the @url{BioMart software suite, http://www.biomart.org}. The +package enables retrieval of large amounts of data in a uniform way without +the need to know the underlying database schemas or write complex SQL queries. +Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, +Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt +users direct access to a diverse set of data and enable a wide range of +powerful online queries from gene annotation to database mining.") + (license license:artistic2.0))) + +(define-public r-biocparallel + (package + (name "r-biocparallel") + (version "1.24.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BiocParallel" version)) + (sha256 + (base32 + "1iryicvmcagcrj29kp49mqhiq2kn72j4idj380hi9illmdrg9ism")))) + (properties + `((upstream-name . "BiocParallel"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'make-reproducible + (lambda _ + ;; Remove generated documentation. + (for-each delete-file + '("inst/doc/BiocParallel_BatchtoolsParam.pdf" + "inst/doc/Introduction_To_BiocParallel.pdf" + "inst/doc/Errors_Logs_And_Debugging.pdf" + "inst/doc/BiocParallel_BatchtoolsParam.R" + "inst/doc/Introduction_To_BiocParallel.R" + "inst/doc/Errors_Logs_And_Debugging.R")) + + ;; Remove time-dependent macro + (substitute* '("inst/doc/BiocParallel_BatchtoolsParam.Rnw" + "inst/doc/Introduction_To_BiocParallel.Rnw" + "inst/doc/Errors_Logs_And_Debugging.Rnw" + "vignettes/BiocParallel_BatchtoolsParam.Rnw" + "vignettes/Introduction_To_BiocParallel.Rnw" + "vignettes/Errors_Logs_And_Debugging.Rnw") + (("\\today") "later")) + + ;; Initialize the random number generator seed when building. + (substitute* "R/internal_rng_stream.R" + (("\"L'Ecuyer-CMRG\"\\)" m) + (string-append + m "; if (!is.na(Sys.getenv(\"SOURCE_DATE_EPOCH\"))) {set.seed(100)}\n")))))))) + (propagated-inputs + `(("r-futile-logger" ,r-futile-logger) + ("r-snow" ,r-snow) + ("r-bh" ,r-bh))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/BiocParallel") + (synopsis "Bioconductor facilities for parallel evaluation") + (description + "This package provides modified versions and novel implementation of +functions for parallel evaluation, tailored to use with Bioconductor +objects.") + (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-biostrings + (package + (name "r-biostrings") + (version "2.58.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Biostrings" version)) + (sha256 + (base32 + "1rbqhs73mhfr1gi0rx28jiyan7i3hb45ai3jpl1656fnrhgjfxq5")))) + (properties + `((upstream-name . "Biostrings"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-crayon" ,r-crayon) + ("r-iranges" ,r-iranges) + ("r-s4vectors" ,r-s4vectors) + ("r-xvector" ,r-xvector))) + (home-page "https://bioconductor.org/packages/Biostrings") + (synopsis "String objects and algorithms for biological sequences") + (description + "This package provides memory efficient string containers, string +matching algorithms, and other utilities, for fast manipulation of large +biological sequences or sets of sequences.") + (license license:artistic2.0))) + (define-public r-category (package (name "r-category") @@ -1764,13 +2048,13 @@ high-throughput sequencing experiments.") (define-public r-genomeinfodb (package (name "r-genomeinfodb") - (version "1.26.4") + (version "1.26.6") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomeInfoDb" version)) (sha256 (base32 - "1sbhdpgabqbi749ixih8nlmq5id7sg8y6kkfj46r00642rc293ys")))) + "1wy4dwiv0pgim975var802z565py4a0nakx6zdvbhry4c0dfczd1")))) (properties `((upstream-name . "GenomeInfoDb"))) (build-system r-build-system) @@ -1791,6 +2075,37 @@ translation between different chromosome sequence naming conventions (e.g., names in their natural, rather than lexicographic, order.") (license license:artistic2.0))) +(define-public r-genomicranges + (package + (name "r-genomicranges") + (version "1.42.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "GenomicRanges" version)) + (sha256 + (base32 + "0j4py5g6pdj35xhlaqhxxhg55j9l4mcdk3yck4dgyavv5f2dh24i")))) + (properties + `((upstream-name . "GenomicRanges"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-iranges" ,r-iranges) + ("r-s4vectors" ,r-s4vectors) + ("r-xvector" ,r-xvector))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/GenomicRanges") + (synopsis "Representation and manipulation of genomic intervals") + (description + "This package provides tools to efficiently represent and manipulate +genomic annotations and alignments is playing a central role when it comes to +analyzing high-throughput sequencing data (a.k.a. NGS data). The +GenomicRanges package defines general purpose containers for storing and +manipulating genomic intervals and variables defined along a genome.") + (license license:artistic2.0))) + (define-public r-gostats (package (name "r-gostats") @@ -1871,6 +2186,25 @@ Enrichment Analysis} (GSEA).") the Human Protein Atlas project.") (license license:artistic2.0))) +(define-public r-limma + (package + (name "r-limma") + (version "3.46.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "limma" version)) + (sha256 + (base32 + "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz")))) + (build-system r-build-system) + (home-page "http://bioinf.wehi.edu.au/limma") + (synopsis "Package for linear models for microarray and RNA-seq data") + (description "This package can be used for the analysis of gene expression +studies, especially the use of linear models for analysing designed experiments +and the assessment of differential expression. The analysis methods apply to +different technologies, including microarrays, RNA-seq, and quantitative PCR.") + (license license:gpl2+))) + (define-public r-rbgl (package (name "r-rbgl") @@ -1975,6 +2309,49 @@ reports together for a particular project that can be viewed in a web browser.") (license license:artistic2.0))) +(define-public r-rsamtools + (package + (name "r-rsamtools") + (version "2.6.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Rsamtools" version)) + (sha256 + (base32 + "040pggkwglc6wy90qnc7xcdnaj0v3iqlykvvsl74241409qly554")))) + (properties + `((upstream-name . "Rsamtools"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'use-system-zlib + (lambda _ + (substitute* "DESCRIPTION" + (("zlibbioc, ") "")) + (substitute* "NAMESPACE" + (("import\\(zlibbioc\\)") "")) + #t))))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bitops" ,r-bitops) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-rhtslib" ,r-rhtslib) + ("r-s4vectors" ,r-s4vectors) + ("r-xvector" ,r-xvector))) + (home-page "https://bioconductor.org/packages/release/bioc/html/Rsamtools.html") + (synopsis "Interface to samtools, bcftools, and tabix") + (description + "This package provides an interface to the @code{samtools}, +@code{bcftools}, and @code{tabix} utilities for manipulating SAM (Sequence +Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed +tab-delimited (tabix) files.") + (license license:expat))) + (define-public r-shortread (package (name "r-shortread") @@ -2110,6 +2487,42 @@ annotation infrastructure.") coding changes and predict coding outcomes.") (license license:artistic2.0))) +(define-public r-xvector + (package + (name "r-xvector") + (version "0.30.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "XVector" version)) + (sha256 + (base32 + "1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq")))) + (properties + `((upstream-name . "XVector"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'use-system-zlib + (lambda _ + (substitute* "DESCRIPTION" + (("zlibbioc, ") "")) + (substitute* "NAMESPACE" + (("import\\(zlibbioc\\)") "")) + #t))))) + (inputs + `(("zlib" ,zlib))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-iranges" ,r-iranges) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/XVector") + (synopsis "Representation and manpulation of external sequences") + (description + "This package provides memory efficient S4 classes for storing sequences +\"externally\" (behind an R external pointer, or on disk).") + (license license:artistic2.0))) + (define-public r-geneplotter (package (name "r-geneplotter") @@ -2318,14 +2731,14 @@ signal in the input, that lead to spurious peaks during peak calling.") (define-public r-diffbind (package (name "r-diffbind") - (version "3.0.14") + (version "3.0.15") (source (origin (method url-fetch) (uri (bioconductor-uri "DiffBind" version)) (sha256 (base32 - "1siabhjd0w7bb6v2gfhsm9j7c7c86z8m6lfsyl8p84h0zhjs2vrw")))) + "06f613s8d9z51njyf839g22gwybx9zs5n6xghwr5j1ad2n4m6qwi")))) (properties `((upstream-name . "DiffBind"))) (build-system r-build-system) (propagated-inputs @@ -2532,14 +2945,14 @@ determining dependencies between variables, code improvement suggestions.") (define-public r-chippeakanno (package (name "r-chippeakanno") - (version "3.24.1") + (version "3.24.2") (source (origin (method url-fetch) (uri (bioconductor-uri "ChIPpeakAnno" version)) (sha256 (base32 - "0qdkwjv8s46d1kmgg2chijv7yzy9sv49kiks18w8x2z89prn15gj")))) + "0l417aygs89wf1j9fjpfjhahzskbpbgcrm8xpx3qm4s0307vfzkw")))) (properties `((upstream-name . "ChIPpeakAnno"))) (build-system r-build-system) (propagated-inputs @@ -2548,6 +2961,7 @@ determining dependencies between variables, code improvement suggestions.") ("r-biomart" ,r-biomart) ("r-biostrings" ,r-biostrings) ("r-dbi" ,r-dbi) + ("r-dplyr" ,r-dplyr) ("r-ensembldb" ,r-ensembldb) ("r-genomeinfodb" ,r-genomeinfodb) ("r-genomicalignments" ,r-genomicalignments) @@ -6521,14 +6935,14 @@ annotations.") (define-public r-rsubread (package (name "r-rsubread") - (version "2.4.2") + (version "2.4.3") (source (origin (method url-fetch) (uri (bioconductor-uri "Rsubread" version)) (sha256 (base32 - "1wczrw5jb69x45hd3rdqqs9vkysdqwlxn9h3kjzn57r4x5q7jrra")))) + "0c4akc89p5467n5rzq9bi7h0h15rbpqpvh7fw42qcj7g2vc41wba")))) (properties `((upstream-name . "Rsubread"))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -7987,14 +8401,14 @@ data.") (define-public r-universalmotif (package (name "r-universalmotif") - (version "1.8.3") + (version "1.8.4") (source (origin (method url-fetch) (uri (bioconductor-uri "universalmotif" version)) (sha256 (base32 - "1ys2kbayc1rzv8nzi60208yfslm4kzynndfg7vw2n0c30dvzycrc")))) + "0pmi5mp5v0srr482vlkfmkp28bywq969fvv9g5kjl5rxki963zmr")))) (properties `((upstream-name . "universalmotif"))) (build-system r-build-system) @@ -10140,8 +10554,8 @@ experiments, and visualize de influence of the involved factors.") by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR -package.The three models admit blocking factors to control for nuissance -variables.To assure a good level of reproducibility a post-test filter is +package. The three models admit blocking factors to control for nuisance +variables. To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.") (license license:gpl2))) @@ -10415,14 +10829,14 @@ family of feature/genome hypotheses.") (define-public r-gviz (package (name "r-gviz") - (version "1.34.0") + (version "1.34.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Gviz" version)) (sha256 (base32 - "0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2")))) + "0bmlfz9ri1gkwyl605a2hqi5b8jdpvynrxwghwmrsd657ip6c7n1")))) (properties `((upstream-name . "Gviz"))) (build-system r-build-system) (propagated-inputs @@ -10677,7 +11091,7 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.") (description "This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, -export to genome browser viewable files, and functi ons for enrichment +export to genome browser viewable files, and functions for enrichment analyses.") (license license:artistic2.0))) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e008ca16fb..313c70784a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8,7 +8,7 @@ ;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2017, 2021 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com> ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com> ;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> @@ -2546,15 +2546,27 @@ accessing bigWig files.") (define-public python-schema-salad (package (name "python-schema-salad") - (version "7.0.20200811075006") + (version "7.1.20210316164414") (source (origin (method url-fetch) (uri (pypi-uri "schema-salad" version)) (sha256 (base32 - "0wanbwmqb189x1m0vacnhpivfsr8rwbqknngivzxxs8j46yj80bg")))) + "04jaykdpgfnkrghvli5swxzqp7yba842am4bz42hcfljsmkrxvrk")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'skip-failing-tests + (lambda _ + ;; Skip tests that require network access. + (substitute* "schema_salad/tests/test_cwl11.py" + (("^def test_(secondaryFiles|outputBinding)" all) + (string-append "@pytest.mark.skip(reason=" + "\"test requires network access\")\n" + all))) + #t))))) (propagated-inputs `(("python-cachecontrol" ,python-cachecontrol-0.11) ("python-lockfile" ,python-lockfile) @@ -2582,7 +2594,7 @@ and record oriented data modeling and the Semantic Web.") (define-public cwltool (package (name "cwltool") - (version "3.0.20201121085451") + (version "3.0.20210319143721") (source (origin (method git-fetch) (uri (git-reference @@ -2591,7 +2603,7 @@ and record oriented data modeling and the Semantic Web.") (file-name (git-file-name name version)) (sha256 (base32 - "1awf99n7aglxc5zszrlrv6jxp355jp45ws7wpsgjlgcdv7advn0w")))) + "1sgs9ckyxb9f9169mc3wm9lnjg4080ai42xqsrwpw9l8apy4c9m5")))) (build-system python-build-system) (arguments `(#:phases @@ -2599,8 +2611,9 @@ and record oriented data modeling and the Semantic Web.") (add-after 'unpack 'loosen-version-restrictions (lambda _ (substitute* "setup.py" - (("== 1.5.1") ">=1.5.1") ; prov - ((", < 3.5") "")) ; shellescape + (("== 1.5.1") ">=1.5.1") ; prov + ((", < 3.5") "") ; shellescape + ((" >= 6.0.2, < 6.2") "")) ; pytest #t)) (add-after 'unpack 'dont-use-git (lambda _ @@ -2612,6 +2625,7 @@ and record oriented data modeling and the Semantic Web.") (add-after 'unpack 'modify-tests (lambda _ ;; Tries to connect to the internet. + (delete-file "tests/test_content_type.py") (delete-file "tests/test_udocker.py") (delete-file "tests/test_http_input.py") (substitute* "tests/test_load_tool.py" @@ -6235,7 +6249,7 @@ subsequent visualization, annotation and storage of results.") (define-public plink-ng (package (inherit plink) (name "plink-ng") - (version "1.90b4") + (version "2.00a2.3") (source (origin (method git-fetch) @@ -6244,29 +6258,26 @@ subsequent visualization, annotation and storage of results.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "02npdwgkpfkdnhw819rhj5kw02a5k5m90b14zq9zzya4hyg929c0")))) + (base32 "1p88lz9agzjlspjhciz61qjc36cfniv4nkxszyy0njqyc5rzc0cd")))) (build-system gnu-build-system) (arguments - '(#:tests? #f ;no "check" target + `(#:tests? #f ;no "check" target #:make-flags (list "BLASFLAGS=-llapack -lopenblas" "CFLAGS=-Wall -O2 -DDYNAMIC_ZLIB=1" "ZLIB=-lz" - "-f" "Makefile.std") + "BIN=plink prettify" + (string-append "CC=" ,(cc-for-target)) + (string-append "PREFIX=" (assoc-ref %outputs "out")) + "DESTDIR=") #:phases (modify-phases %standard-phases (add-after 'unpack 'chdir (lambda _ (chdir "1.9") #t)) - (delete 'configure) ; no "configure" script - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") - "/bin/"))) - (install-file "plink" bin) - #t)))))) + (delete 'configure)))) ; no "configure" script (inputs - `(("zlib" ,zlib) - ("lapack" ,lapack) - ("openblas" ,openblas))) + `(("lapack" ,lapack) + ("openblas" ,openblas) + ("zlib" ,zlib))) (home-page "https://www.cog-genomics.org/plink/") (license license:gpl3+))) @@ -6728,9 +6739,9 @@ of these reads to align data quickly through a hash-based indexing scheme.") (synopsis "Biological sequence analysis tool for NGS reads") (description "SortMeRNA is a biological sequence analysis tool for filtering, mapping -and operational taxonomic unit (OTU) picking of next generation -sequencing (NGS) reads. The core algorithm is based on approximate seeds and -allows for fast and sensitive analyses of nucleotide sequences. The main +and @acronym{OTU, operational taxonomic unit} picking of @acronym{NGS, next +generation sequencing} reads. The core algorithm is based on approximate seeds +and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data.") ;; The source includes x86 specific code (supported-systems '("x86_64-linux" "i686-linux")) @@ -7622,311 +7633,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-limma - (package - (name "r-limma") - (version "3.46.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "limma" version)) - (sha256 - (base32 - "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz")))) - (build-system r-build-system) - (home-page "http://bioinf.wehi.edu.au/limma") - (synopsis "Package for linear models for microarray and RNA-seq data") - (description "This package can be used for the analysis of gene expression -studies, especially the use of linear models for analysing designed experiments -and the assessment of differential expression. The analysis methods apply to -different technologies, including microarrays, RNA-seq, and quantitative PCR.") - (license license:gpl2+))) - -(define-public r-xvector - (package - (name "r-xvector") - (version "0.30.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "XVector" version)) - (sha256 - (base32 - "1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq")))) - (properties - `((upstream-name . "XVector"))) - (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'use-system-zlib - (lambda _ - (substitute* "DESCRIPTION" - (("zlibbioc, ") "")) - (substitute* "NAMESPACE" - (("import\\(zlibbioc\\)") "")) - #t))))) - (inputs - `(("zlib" ,zlib))) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-iranges" ,r-iranges) - ("r-s4vectors" ,r-s4vectors))) - (home-page "https://bioconductor.org/packages/XVector") - (synopsis "Representation and manpulation of external sequences") - (description - "This package provides memory efficient S4 classes for storing sequences -\"externally\" (behind an R external pointer, or on disk).") - (license license:artistic2.0))) - -(define-public r-genomicranges - (package - (name "r-genomicranges") - (version "1.42.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "GenomicRanges" version)) - (sha256 - (base32 - "0j4py5g6pdj35xhlaqhxxhg55j9l4mcdk3yck4dgyavv5f2dh24i")))) - (properties - `((upstream-name . "GenomicRanges"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-iranges" ,r-iranges) - ("r-s4vectors" ,r-s4vectors) - ("r-xvector" ,r-xvector))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/GenomicRanges") - (synopsis "Representation and manipulation of genomic intervals") - (description - "This package provides tools to efficiently represent and manipulate -genomic annotations and alignments is playing a central role when it comes to -analyzing high-throughput sequencing data (a.k.a. NGS data). The -GenomicRanges package defines general purpose containers for storing and -manipulating genomic intervals and variables defined along a genome.") - (license license:artistic2.0))) - -(define-public r-biobase - (package - (name "r-biobase") - (version "2.50.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "Biobase" version)) - (sha256 - (base32 - "11kgc4flywlm3i18603558l8ksv91c24vkc5fnnbcd375i2dhhd4")))) - (properties - `((upstream-name . "Biobase"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics))) - (home-page "https://bioconductor.org/packages/Biobase") - (synopsis "Base functions for Bioconductor") - (description - "This package provides functions that are needed by many other packages -on Bioconductor or which replace R functions.") - (license license:artistic2.0))) - -(define-public r-annotationdbi - (package - (name "r-annotationdbi") - (version "1.52.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "AnnotationDbi" version)) - (sha256 - (base32 - "0zqxgh3nx6y8ry12s2vss2f4axz5vpqxha1y4ifhhcx4zhpzsglr")))) - (properties - `((upstream-name . "AnnotationDbi"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-dbi" ,r-dbi) - ("r-iranges" ,r-iranges) - ("r-rsqlite" ,r-rsqlite) - ("r-s4vectors" ,r-s4vectors))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/AnnotationDbi") - (synopsis "Annotation database interface") - (description - "This package provides user interface and database connection code for -annotation data packages using SQLite data storage.") - (license license:artistic2.0))) - -(define-public r-biomart - (package - (name "r-biomart") - (version "2.46.3") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "biomaRt" version)) - (sha256 - (base32 - "0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7")))) - (properties - `((upstream-name . "biomaRt"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biocfilecache" ,r-biocfilecache) - ("r-httr" ,r-httr) - ("r-openssl" ,r-openssl) - ("r-progress" ,r-progress) - ("r-rappdirs" ,r-rappdirs) - ("r-stringr" ,r-stringr) - ("r-xml" ,r-xml) - ("r-xml2" ,r-xml2))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/biomaRt") - (synopsis "Interface to BioMart databases") - (description - "biomaRt provides an interface to a growing collection of databases -implementing the @url{BioMart software suite, http://www.biomart.org}. The -package enables retrieval of large amounts of data in a uniform way without -the need to know the underlying database schemas or write complex SQL queries. -Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, -Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt -users direct access to a diverse set of data and enable a wide range of -powerful online queries from gene annotation to database mining.") - (license license:artistic2.0))) - -(define-public r-biocparallel - (package - (name "r-biocparallel") - (version "1.24.1") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "BiocParallel" version)) - (sha256 - (base32 - "1iryicvmcagcrj29kp49mqhiq2kn72j4idj380hi9illmdrg9ism")))) - (properties - `((upstream-name . "BiocParallel"))) - (build-system r-build-system) - (propagated-inputs - `(("r-futile-logger" ,r-futile-logger) - ("r-snow" ,r-snow) - ("r-bh" ,r-bh))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/BiocParallel") - (synopsis "Bioconductor facilities for parallel evaluation") - (description - "This package provides modified versions and novel implementation of -functions for parallel evaluation, tailored to use with Bioconductor -objects.") - (license (list license:gpl2+ license:gpl3+)))) - -(define-public r-biostrings - (package - (name "r-biostrings") - (version "2.58.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "Biostrings" version)) - (sha256 - (base32 - "1rbqhs73mhfr1gi0rx28jiyan7i3hb45ai3jpl1656fnrhgjfxq5")))) - (properties - `((upstream-name . "Biostrings"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-crayon" ,r-crayon) - ("r-iranges" ,r-iranges) - ("r-s4vectors" ,r-s4vectors) - ("r-xvector" ,r-xvector))) - (home-page "https://bioconductor.org/packages/Biostrings") - (synopsis "String objects and algorithms for biological sequences") - (description - "This package provides memory efficient string containers, string -matching algorithms, and other utilities, for fast manipulation of large -biological sequences or sets of sequences.") - (license license:artistic2.0))) - -(define-public r-rsamtools - (package - (name "r-rsamtools") - (version "2.6.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "Rsamtools" version)) - (sha256 - (base32 - "040pggkwglc6wy90qnc7xcdnaj0v3iqlykvvsl74241409qly554")))) - (properties - `((upstream-name . "Rsamtools"))) - (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'use-system-zlib - (lambda _ - (substitute* "DESCRIPTION" - (("zlibbioc, ") "")) - (substitute* "NAMESPACE" - (("import\\(zlibbioc\\)") "")) - #t))))) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-biocparallel" ,r-biocparallel) - ("r-biostrings" ,r-biostrings) - ("r-bitops" ,r-bitops) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-rhtslib" ,r-rhtslib) - ("r-s4vectors" ,r-s4vectors) - ("r-xvector" ,r-xvector))) - (home-page "https://bioconductor.org/packages/release/bioc/html/Rsamtools.html") - (synopsis "Interface to samtools, bcftools, and tabix") - (description - "This package provides an interface to the @code{samtools}, -@code{bcftools}, and @code{tabix} utilities for manipulating SAM (Sequence -Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed -tab-delimited (tabix) files.") - (license license:expat))) - -(define-public r-delayedarray - (package - (name "r-delayedarray") - (version "0.16.2") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "DelayedArray" version)) - (sha256 - (base32 - "09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0")))) - (properties - `((upstream-name . "DelayedArray"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) - ("r-s4vectors" ,r-s4vectors) - ("r-iranges" ,r-iranges) - ("r-matrix" ,r-matrix) - ("r-matrixgenerics" ,r-matrixgenerics))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/DelayedArray") - (synopsis "Delayed operations on array-like objects") - (description - "Wrapping an array-like object (typically an on-disk object) in a -@code{DelayedArray} object allows one to perform common array operations on it -without loading the object in memory. In order to reduce memory usage and -optimize performance, operations on the object are either delayed or executed -using a block processing mechanism. Note that this also works on in-memory -array-like objects like @code{DataFrame} objects (typically with Rle columns), -@code{Matrix} objects, and ordinary arrays and data frames.") - (license license:artistic2.0))) - (define-public r-summarizedexperiment (package (name "r-summarizedexperiment") @@ -8045,13 +7751,13 @@ as well as query and modify the browser state, such as the current viewport.") (define-public r-genomicfeatures (package (name "r-genomicfeatures") - (version "1.42.2") + (version "1.42.3") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicFeatures" version)) (sha256 (base32 - "17ns5hvx5q8mrmkgb6linspwml62mi34i6al5bxlib5xi9d9f04s")))) + "168cf261vmcqffbzassavkjyz9a2af0l6zbv9cagkx6b1qrk3siz")))) (properties `((upstream-name . "GenomicFeatures"))) (build-system r-build-system) diff --git a/gnu/packages/boost.scm b/gnu/packages/boost.scm index bc0e95b1ba..33f05cff15 100644 --- a/gnu/packages/boost.scm +++ b/gnu/packages/boost.scm @@ -16,6 +16,7 @@ ;;; Copyright © 2020 Jonathan Brielmaier <jonathan.brielmaier@web.de> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2021 Greg Hogan <code@greghogan.com> +;;; Copyright © 2021 Franck Pérignon <franck.perignon@univ-grenoble-alpes.fr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -47,6 +48,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages python) #:use-module (gnu packages shells) + #:use-module (gnu packages mpi) #:use-module (srfi srfi-1)) (define (version-with-underscores version) @@ -333,6 +335,30 @@ Boost.Thread.") signals and slots system.") (license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt")))) + +(define-public boost-mpi + (package + (inherit boost) + (name "boost-mpi") + (native-inputs + `(("perl" ,perl) + ,@(if (%current-target-system) + '() + `(("python" ,python-wrapper))) + ("openmpi" , openmpi))) + (arguments + (substitute-keyword-arguments (package-arguments boost) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'configure 'update-jam + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((output-port (open-file "project-config.jam" "a"))) + (display "using mpi ;" output-port) + (newline output-port) + (close output-port)))))))) + (home-page "https://www.boost.org") + (synopsis "Message Passing Interface (MPI) library for C++"))) + (define-public mdds (package (name "mdds") diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index c9a3d2c217..6093e0d9e6 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -478,15 +478,15 @@ tree binary files. These are board description files used by Linux and BSD.") (define u-boot (package (name "u-boot") - (version "2021.01") + (version "2021.04") (source (origin (method url-fetch) (uri (string-append - "ftp://ftp.denx.de/pub/u-boot/" + "https://ftp.denx.de/pub/u-boot/" "u-boot-" version ".tar.bz2")) (sha256 (base32 - "0m04glv9kn3bhs62sn675w60wkrl4m3a4hnbnnw67s3l198y21xl")))) + "06p1vymf0dl6jc2xy5w7p42mpgppa46lmpm2ishmgsycnldqnhqd")))) (native-inputs `(("bc" ,bc) ("bison" ,bison) diff --git a/gnu/packages/build-tools.scm b/gnu/packages/build-tools.scm index b47a790f75..9a18b77ff0 100644 --- a/gnu/packages/build-tools.scm +++ b/gnu/packages/build-tools.scm @@ -316,7 +316,7 @@ resembles Python.") (define-public meson-next (package (inherit meson) - (version "0.57.1") + (version "0.57.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/mesonbuild/meson/" @@ -324,7 +324,7 @@ resembles Python.") version ".tar.gz")) (sha256 (base32 - "19n8alcpzv6npgp27iqljkmvdmr7s2c7zm8y997j1nlvpa1cgqbj")))))) + "1iac7p99zfgkznq4qlnkk7b8xwwlilcrnkf33sczm56yqnqyg0rs")))))) (define-public premake4 (package @@ -535,3 +535,43 @@ besides executing the make build command, updates the JSON compilation database file corresponding to that build, resulting in a command-line interface similar to Bear.") (license license:gpl3))) + +(define-public build + (package + (name "build") + (version "0.3.10") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.codesynthesis.com/download/" + "build/" (version-major+minor version) + "/build-" version ".tar.bz2")) + (sha256 + (base32 "1lx5rpnmsbip43zpp0a57sl5rm7pjb0y6i2si6rfglfp4p9d3z76")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags (list (string-append "install_prefix=" %output)) + #:tests? #f + #:phases (modify-phases %standard-phases + (delete 'build) + (delete 'configure)))) + (home-page "https://www.codesynthesis.com/projects/build/") + (synopsis "Massively-parallel build system implemented on top of GNU make") + (description "Build is a massively-parallel software build system +implemented on top of GNU Make, designed with the following tasks in mind: +@itemize +@item configuration +@item building +@item testing +@item installation +@end itemize +Build has features such as: +@itemize +@item Position-independent makefiles. +@item Non-recursive multi-makefile include-based structure. +@item Leaf makefiles are full-fledged GNU makefiles, not just variable definitions. +@item Complete dependency graph. +@item Inter-project dependency tracking. +@item Extensible language/compiler framework. +@end itemize") + (license license:gpl2+))) diff --git a/gnu/packages/c.scm b/gnu/packages/c.scm index 429ff94070..36a9366554 100644 --- a/gnu/packages/c.scm +++ b/gnu/packages/c.scm @@ -546,7 +546,7 @@ portability.") (define-public aws-c-common (package (name "aws-c-common") - (version "0.5.2") + (version "0.5.3") (source (origin (method git-fetch) (uri (git-reference @@ -555,7 +555,7 @@ portability.") (file-name (git-file-name name version)) (sha256 (base32 - "0rd2qzaa9mmn5f6f2bl1wgv54f17pqx3vwyy9f8ylh59qfnilpmg")))) + "03fcvh3l1l6fkzkcbaprk10qmy8l77zhmh60h1px2ik09sqd9p72")))) (build-system cmake-build-system) (arguments '(#:configure-flags diff --git a/gnu/packages/calendar.scm b/gnu/packages/calendar.scm index 4e1e4f05b6..d473900ac5 100644 --- a/gnu/packages/calendar.scm +++ b/gnu/packages/calendar.scm @@ -156,7 +156,7 @@ the <tz.h> library for handling time zones and leap seconds.") (native-inputs `(("docbook-xml" ,docbook-xml-4.3) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("perl" ,perl) ("pkg-config" ,pkg-config) ("vala" ,vala))) diff --git a/gnu/packages/ccache.scm b/gnu/packages/ccache.scm index c5b9790f27..112f613c88 100644 --- a/gnu/packages/ccache.scm +++ b/gnu/packages/ccache.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2014, 2015, 2016, 2018 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -22,7 +23,7 @@ #:use-module (guix packages) #:use-module ((guix licenses) #:select (gpl3+)) #:use-module (guix download) - #:use-module (guix build-system gnu) + #:use-module (guix build-system cmake) #:use-module (gnu packages) #:use-module (gnu packages perl) #:use-module (gnu packages compression)) @@ -30,25 +31,32 @@ (define-public ccache (package (name "ccache") - (version "3.7.12") + (version "4.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/ccache/ccache/releases/download/v" version "/ccache-" version ".tar.xz")) (sha256 - (base32 "005liq8csgxdn7m9hj2ah07hishww855p8sc96y1hrnwc21lwbx0")))) - (build-system gnu-build-system) + (base32 "0kx9ggbbm899zwyyxvm4dgzn1b95zi1niz0l734pi5y3i0cb251g")))) + (build-system cmake-build-system) (native-inputs `(("perl" ,perl) ; for test/run ("which" ,(@ (gnu packages base) which)))) - (inputs `(("zlib" ,zlib))) + (inputs `(("zlib" ,zlib) + ("zstd" ,zstd "lib"))) (arguments - '(#:phases (modify-phases %standard-phases - (add-before 'check 'setup-tests - (lambda _ - (substitute* '("unittest/test_hashutil.c" "test/suites/base.bash") - (("#!/bin/sh") (string-append "#!" (which "sh")))) - #t))))) + '(#:phases + (modify-phases %standard-phases + (add-before 'configure 'setup-tests + (lambda _ + (substitute* '("unittest/test_hashutil.cpp" "test/suites/base.bash") + (("#!/bin/sh") (string-append "#!" (which "sh")))) + #t)) + ;; tests require a writable HOME + (add-before 'check 'set-home + (lambda _ + (setenv "HOME" (getenv "TMPDIR")) + #t))))) (home-page "https://ccache.dev/") (synopsis "Compiler cache") (description diff --git a/gnu/packages/certs.scm b/gnu/packages/certs.scm index 5bdf3b5a4a..fae0d5fc54 100644 --- a/gnu/packages/certs.scm +++ b/gnu/packages/certs.scm @@ -111,7 +111,7 @@ taken from the NSS package and thus ultimately from the Mozilla project.") (define-public le-certs (package (name "le-certs") - (version "0") + (version "1") (source #f) (build-system trivial-build-system) (arguments @@ -119,9 +119,12 @@ taken from the NSS package and thus ultimately from the Mozilla project.") #:builder (begin (use-modules (guix build utils)) - (let ((root (assoc-ref %build-inputs "isrgrootx1.pem")) - (intermediate (assoc-ref %build-inputs "letsencryptauthorityx3.pem")) - (backup (assoc-ref %build-inputs "letsencryptauthorityx4.pem")) + (let ((root-rsa (assoc-ref %build-inputs "isrgrootx1.pem")) + (root-ecdsa (assoc-ref %build-inputs "isrgrootx2.pem")) + (intermediate-rsa (assoc-ref %build-inputs "letsencryptauthorityr3.pem")) + (intermediate-ecdsa (assoc-ref %build-inputs "letsencryptauthoritye1.pem")) + (backup-rsa (assoc-ref %build-inputs "letsencryptauthorityr4.pem")) + (backup-ecdsa (assoc-ref %build-inputs "letsencryptauthoritye2.pem")) (out (string-append (assoc-ref %outputs "out") "/etc/ssl/certs")) (openssl (assoc-ref %build-inputs "openssl")) (perl (assoc-ref %build-inputs "perl"))) @@ -130,7 +133,9 @@ taken from the NSS package and thus ultimately from the Mozilla project.") (lambda (cert) (copy-file cert (string-append out "/" (strip-store-file-name cert)))) - (list root intermediate backup)) + (list root-rsa root-ecdsa + intermediate-rsa intermediate-ecdsa + backup-rsa backup-ecdsa)) ;; Create hash symlinks suitable for OpenSSL ('SSL_CERT_DIR' and ;; similar.) @@ -150,26 +155,55 @@ taken from the NSS package and thus ultimately from the Mozilla project.") (sha256 (base32 "1la36n2f31j9s03v847ig6ny9lr875q3g7smnq33dcsmf2i5gd92")))) - ;; "Let’s Encrypt Authority X3", the active Let's Encrypt intermediate - ;; certificate. - ("letsencryptauthorityx3.pem" + ; Upcoming ECDSA Let's Encrypt root certificate, "ISRG Root X2" + ; Let's Encrypt describes it as "Active, limited availability" + ("isrgrootx2.pem" ,(origin (method url-fetch) - (uri "https://letsencrypt.org/certs/letsencryptauthorityx3.pem") + (uri "https://letsencrypt.org/certs/isrg-root-x2.pem") (sha256 (base32 - "100lxxvqv4fj563bm03zzk5r36hq5jx9nnrajzs38g825c5k0cg2")))) - ;; "Let’s Encrypt Authority X4", the backup Let's Encrypt intermediate - ;; certificate. This will be used for disaster recovery and will only be - ;; used should Let's Encrypt lose the ability to issue with "Let’s - ;; Encrypt Authority X3". - ("letsencryptauthorityx4.pem" - ,(origin - (method url-fetch) - (uri "https://letsencrypt.org/certs/letsencryptauthorityx4.pem") - (sha256 - (base32 - "0d5256gwf73drq6q6jala28rfzhrgbk5pjfq27vc40ly91pdyh8m")))))) + "04xh8912nwkghqydbqvvmslpqbcafgxgjh9qnn0z2vgy24g8hgd1")))) + ;; "Let’s Encrypt Authority R3", the active Let's Encrypt intermediate + ;; RSA certificate. + ("letsencryptauthorityr3.pem" + ,(origin + (method url-fetch) + (uri "https://letsencrypt.org/certs/lets-encrypt-r3.pem") + (sha256 + (base32 + "0clxry49rx6qd3pgbzknpgzywbg3j96zy0227wwjnwivqj7inzhp")))) + ;; "Let’s Encrypt Authority E1", the active Let's Encrypt intermediate + ;; ECDSA certificate. + ("letsencryptauthoritye1.pem" + ,(origin + (method url-fetch) + (uri "https://letsencrypt.org/certs/lets-encrypt-e1.pem") + (sha256 + (base32 + "1zwrc6dlk1qig0z23x6x7fib14rrw41ccbf2ds0rw75zccc59xx0")))) + ;; "Let’s Encrypt Authority R4", the backup Let's Encrypt intermediate + ;; RSA certificate. This will be used for disaster recovery and will only be + ;; used should Let's Encrypt lose the ability to issue with "Let’s + ;; Encrypt Authority R3". + ("letsencryptauthorityr4.pem" + ,(origin + (method url-fetch) + (uri "https://letsencrypt.org/certs/lets-encrypt-r4.pem") + (sha256 + (base32 + "09bzxzbwb9x2xxan3p1fyj1pi2p5yks0879gwz5f28y9mzq8vmd8")))) + ;; "Let’s Encrypt Authority E2", the backup Let's Encrypt intermediate + ;; ECDSA certificate. This will be used for disaster recovery and will + ;; only be used should Let's Encrypt lose the ability to issue with "Let’s + ;; Encrypt Authority E1". + ("letsencryptauthoritye2.pem" + ,(origin + (method url-fetch) + (uri "https://letsencrypt.org/certs/lets-encrypt-e2.pem") + (sha256 + (base32 + "1wfmsa29lyi9dkh6xdcamb2rhkp5yl2ppnsgrzcrjl5c7gbqh9ml")))))) (home-page "https://letsencrypt.org/certificates/") (synopsis "Let's Encrypt root and intermediate certificates") (description "This package provides a certificate store containing only the diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 81e583775c..b47d2b58d4 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -24,11 +24,11 @@ ;;; Copyright © 2017, 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017, 2019 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017 Nikita <nikita@n0.is> -;;; Copyright © 2015, 2017, 2018, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2017, 2018, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017, 2018, 2020 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com> -;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2019, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019 Chris Marusich <cmmarusich@gmail.com> ;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> @@ -562,7 +562,7 @@ and it supports a very flexible form of test discovery.") (define-public doctest (package (name "doctest") - (version "2.4.5") + (version "2.4.6") (home-page "https://github.com/onqtam/doctest") (source (origin (method git-fetch) @@ -570,7 +570,7 @@ and it supports a very flexible form of test discovery.") (file-name (git-file-name name version)) (sha256 (base32 - "1pc34dvpgdzx3paqdf0khgs87kvjncx27yn434f5ic33r1lwr9r4")))) + "14m3q6d96zg6d99x1152jkly50gdjrn5ylrbhax53pfgfzzc5yqx")))) (build-system cmake-build-system) (synopsis "C++ test framework") (description @@ -1089,6 +1089,37 @@ supports coverage of subprocesses.") (define-public python2-pytest-cov (package-with-python2 python-pytest-cov)) +(define-public python-pytest-httpserver + (package + (name "python-pytest-httpserver") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pytest_httpserver" version)) + (sha256 + (base32 + "0vbls0j570l5my83j4jnk5blmnir44i0w511azlh41nl6k8rac5f")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-werkzeug" ,python-werkzeug))) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'check 'fix-library-loading + (lambda _ + (setenv "PYTHONPATH" (string-append (getenv "PYTHONPATH") ":.")))) + (replace 'check + (lambda _ + (invoke "pytest" "tests" "-vv") + (invoke "pytest" "tests" "-vv" "--ssl")))))) + (home-page "https://github.com/csernazs/pytest-httpserver") + (synopsis "HTTP server for pytest") + (description "Pytest plugin library to test http clients without +contacting the real http server.") + (license license:expat))) + (define-public python-pytest-runner (package (name "python-pytest-runner") @@ -1704,7 +1735,7 @@ C/C++, R, and more, and uploads it to the @code{codecov.io} service.") (define-public python-testpath (package (name "python-testpath") - (version "0.2") + (version "0.4.4") (source (origin (method git-fetch) @@ -1714,7 +1745,7 @@ C/C++, R, and more, and uploads it to the @code{codecov.io} service.") (file-name (git-file-name name version)) (sha256 (base32 - "0r4iiizjql6ny1ln7ciw7rrbjadz1s9zrf2hl0xkgnh3ypd8936f")))) + "1fwv4d3p54xx1x942s104irr35lszvv6jnr4nn1scsfvc0m1qmbk")))) (build-system python-build-system) (arguments `(#:tests? #f ; this package does not even have a setup.py @@ -1723,19 +1754,25 @@ C/C++, R, and more, and uploads it to the @code{codecov.io} service.") (srfi srfi-1)) #:phases (modify-phases %standard-phases - (delete 'install) (replace 'build + (lambda _ + ;; A ZIP archive should be generated, but it fails with "ZIP does + ;; not support timestamps before 1980". Luckily, + ;; SOURCE_DATE_EPOCH is respected, which we set to some time in + ;; 1980. + (setenv "SOURCE_DATE_EPOCH" "315532800") + (invoke "flit" "build"))) + (replace 'install (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((version (last - (string-split (assoc-ref inputs "python") #\-))) - (x.y (string-join (take (string-split version #\.) 2) - ".")) - (dir (string-append - (assoc-ref outputs "out") - "/lib/python" x.y "/site-packages/testpath"))) - (mkdir-p dir) - (copy-recursively "testpath" dir)) - #t))))) + (add-installed-pythonpath inputs outputs) + (let ((out (assoc-ref outputs "out"))) + (for-each (lambda (wheel) + (format #true wheel) + (invoke "python" "-m" "pip" "install" + wheel (string-append "--prefix=" out))) + (find-files "dist" "\\.whl$")))))))) + (native-inputs + `(("python-flit" ,python-flit))) (home-page "https://github.com/takluyver/testpath") (synopsis "Test utilities for code working with files and commands") (description @@ -2687,7 +2724,7 @@ provides a simple way to achieve this.") (native-inputs `(("vala" ,vala) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ;; For tests. diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm index 11cd04c161..25a4d5f156 100644 --- a/gnu/packages/chez.scm +++ b/gnu/packages/chez.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Brendan Tildesley <mail@brendan.scot> +;;; Copyright © 2021 Philip McGrath <philip@philipmcgrath.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,6 +30,7 @@ #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix utils) + #:use-module (guix gexp) #:use-module (guix build-system gnu) #:use-module (gnu packages compression) #:use-module (gnu packages ncurses) @@ -43,23 +45,27 @@ #:use-module (srfi srfi-1)) (define nanopass - (let ((version "1.9.1")) + (let ((version "1.9.2")) (origin (method git-fetch) (uri (git-reference (url "https://github.com/nanopass/nanopass-framework-scheme") (commit (string-append "v" version)))) - (sha256 (base32 "1synadgaycca39jfx525975ss9y0lkl516sdrc62wrrllamm8n21")) + (sha256 (base32 "16vjsik9rrzbabbhbxbaha51ppi3f9n8rk59pc6zdyffs0vziy4i")) (file-name (git-file-name "nanopass" version))))) (define stex - (let ((version "1.2.2")) + ;; This commit includes a fix, which we would otherwise want to use as + ;; patch. Let's revert to tagged releases as soon as one becomes available. + (let* ((commit "54051494434a197772bf6ca5b4e6cf6be55f39a5") + (version "1.2.2") + (version (git-version version "1" commit))) (origin (method git-fetch) (uri (git-reference (url "https://github.com/dybvig/stex") - (commit (string-append "v" version)))) - (sha256 (base32 "1q5i8pf4cdfjsj6r2k1rih7ljbfggyxdng2p2fvsgarzihpsin2i")) + (commit commit))) + (sha256 (base32 "01jnvw8qw33gnpzwrakwhsr05h6b609lm180jnspcrb7lds2p23d")) (file-name (git-file-name "stex" version))))) (define-public chez-scheme @@ -74,21 +80,41 @@ (commit (string-append "v" version)))) (sha256 (base32 "0prgn2z9l888j93ydxaf04ph424g0fi3a8w7f8m0b2r7fr1v7388")) - (file-name (git-file-name name version)))) + (file-name (git-file-name name version)) + (patches + (search-patches + ;; backported from upstream: remove on next release + "chez-scheme-build-util-paths-backport.patch")) + (snippet + ;; remove bundled libraries + (with-imported-modules '((guix build utils)) + #~(begin + (use-modules (guix build utils)) + (for-each (lambda (dir) + (when (directory-exists? dir) + (delete-file-recursively dir))) + '("stex" + "nanopass" + "lz4" + "zlib"))))))) (build-system gnu-build-system) (inputs - `(("ncurses" ,ncurses) - ("libuuid" ,util-linux "lib") - ("libx11" ,libx11) - ("lz4" ,lz4) - ("lz4:static" ,lz4 "static") - ("xorg-rgb" ,xorg-rgb) - ("nanopass" ,nanopass) + `(("libuuid" ,util-linux "lib") ("zlib" ,zlib) ("zlib:static" ,zlib "static") - ("stex" ,stex))) + ("lz4" ,lz4) + ("lz4:static" ,lz4 "static") + ;; for expeditor: + ("ncurses" ,ncurses) + ;; for X11 clipboard support in expeditor: + ;; https://github.com/cisco/ChezScheme/issues/9#issuecomment-222057232 + ("libx11" ,libx11))) (native-inputs - `(("texlive" ,(texlive-updmap.cfg (list texlive-latex-oberdiek + `(("nanopass" ,nanopass) ; source only + ;; for docs + ("stex" ,stex) + ("xorg-rgb" ,xorg-rgb) + ("texlive" ,(texlive-union (list texlive-latex-oberdiek texlive-generic-epsf))) ("ghostscript" ,ghostscript) ("netpbm" ,netpbm))) @@ -98,96 +124,54 @@ (files (list (string-append "lib/csv" version "-site")))))) (outputs '("out" "doc")) (arguments - `(#:modules ((guix build gnu-build-system) - (guix build utils) - (ice-9 match)) + `(#:modules + ((guix build gnu-build-system) + (guix build utils) + (ice-9 ftw) + (ice-9 match)) #:test-target "test" #:configure-flags - (list ,(match (or (%current-target-system) (%current-system)) - ("x86_64-linux" '(list "--machine=ta6le")) - ("i686-linux" '(list "--machine=ti3le")) - ;; Let autodetection have its attempt on other architectures. - (_ - '()))) + '("--threads") ;; TODO when we fix armhf, it doesn't support --threads #:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-processor-detection - (lambda _ (substitute* "configure" - (("uname -a") "uname -m")) - #t)) - ;; Adapt the custom 'configure' script. + ;; put these where configure expects them to be + (add-after 'unpack 'unpack-nanopass+stex + (lambda* (#:key native-inputs inputs #:allow-other-keys) + (for-each (lambda (dep) + (define src + (assoc-ref (or native-inputs inputs) dep)) + (copy-recursively src dep + #:keep-mtime? #t)) + '("nanopass" "stex")) + #t)) + ;; NOTE: the custom Chez 'configure' script doesn't allow + ;; unrecognized flags, such as those automatically added + ;; by `gnu-build-system`. (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (nanopass (assoc-ref inputs "nanopass")) - (stex (assoc-ref inputs "stex")) - (lz4-static (assoc-ref inputs "lz4:static")) - (zlib-static (assoc-ref inputs "zlib:static")) - (unpack (assoc-ref %standard-phases 'unpack)) - (patch-source-shebangs - (assoc-ref %standard-phases 'patch-source-shebangs))) - (map (match-lambda - ((src orig-name new-name) - (with-directory-excursion "." - (apply unpack (list #:source src)) - (apply patch-source-shebangs (list #:source src))) - (delete-file-recursively new-name) - (invoke "mv" orig-name new-name))) - `((,nanopass "source" "nanopass") - (,stex "source" "stex"))) - ;; The configure step wants to CURL all submodules as it - ;; detects a checkout without submodules. Disable curling, - ;; and manually patch the needed modules for compilation. - (substitute* "configure" - (("! -f '") "-d '")) ; working around CURL. - (substitute* (find-files "mats" "Mf-.*") - (("^[[:space:]]+(cc ) *") "\tgcc ")) - (substitute* - (find-files "." (string-append - "(" - "Mf-[a-zA-Z0-9.]+" - "|Makefile[a-zA-Z0-9.]*" - "|checkin" - "|stex\\.stex" - "|newrelease" - "|workarea" - "|unix\\.ms" - "|^6\\.ms" - ;;"|[a-zA-Z0-9.]+\\.ms" ; guile can't read - ")")) - (("/bin/rm") (which "rm")) - (("/bin/ln") (which "ln")) - (("/bin/cp") (which "cp")) - (("/bin/echo") (which "echo"))) - (substitute* "makefiles/installsh" - (("/bin/true") (which "true"))) - (substitute* "stex/Makefile" - (("PREFIX=/usr") (string-append "PREFIX=" out))) - (invoke "./configure" "--threads" - (string-append "ZLIB=" zlib-static "/lib/libz.a") - (string-append "LZ4=" lz4-static "/lib/liblz4.a") - (string-append "--installprefix=" out))))) - ;; Installation of the documentation requires a running "chez". - (add-after 'install 'install-doc - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((doc (string-append (assoc-ref outputs "doc") - "/share/doc/" ,name "-" ,version))) - (invoke "make" "docs") - (with-directory-excursion "csug" - (substitute* "Makefile" - ;; The ‘installdir=’ can't be overruled on the command line. - (("/tmp/csug9") doc) - ;; $m is the ‘machine type’, e.g. ‘ta6le’ on x86_64, but is - ;; set incorrectly for some reason, e.g. to ‘a6le’ on x86_64. - ;; Avoid the whole mess by running the (machine-independent) - ;; ‘installsh’ script at its original location. - (("\\$m/installsh") "makefiles/installsh")) - (invoke "make" "install") - (install-file "csug.pdf" doc)) - (with-directory-excursion "release_notes" - (install-file "release_notes.pdf" doc)) + (lambda* (#:key inputs outputs + (configure-flags '()) + #:allow-other-keys) + (let* ((zlib-static (assoc-ref inputs "zlib:static")) + (lz4-static (assoc-ref inputs "lz4:static")) + (out (assoc-ref outputs "out")) + ;; add flags which are always required: + (flags (cons* + (string-append "--installprefix=" out) + (string-append "ZLIB=" zlib-static "/lib/libz.a") + (string-append "LZ4=" lz4-static "/lib/liblz4.a") + ;; Guix will do compress man pages, + ;; and letting Chez try causes an error + "--nogzip-man-pages" + configure-flags))) + (format #t "configure flags: ~s~%" flags) + ;; Some makefiles (for tests) don't seem to propagate CC + ;; properly, so we take it out of their hands: + (setenv "CC" ,(cc-for-target)) + (apply invoke + "./configure" + flags) #t))) - ;; The binary file name is called "scheme" as the one from MIT/GNU + ;; The binary file name is called "scheme" as is the one from MIT/GNU ;; Scheme. We add a symlink to use in case both are installed. (add-after 'install 'install-symlink (lambda* (#:key outputs #:allow-other-keys) @@ -202,16 +186,75 @@ "/" name ".boot"))) (find-files lib "scheme.boot")) #t))) - (add-before 'reset-gzip-timestamps 'make-manpages-writable - (lambda* (#:key outputs #:allow-other-keys) - (map (lambda (file) - (make-file-writable file)) - (find-files (string-append (assoc-ref outputs "out") - "/share/man") - ".*\\.gz$")) - #t))))) - ;; According to the documentation MIPS is not supported. - ;; Cross-compiling for the Raspberry Pi is supported, but not native ARM. + ;; Building explicitly lets us avoid using substitute* + ;; to re-write makefiles. + (add-after 'install-symlink 'prepare-stex + (lambda* (#:key native-inputs inputs outputs #:allow-other-keys) + (let* ((stex+version + (strip-store-file-name + (assoc-ref (or native-inputs inputs) "stex"))) + ;; Eventually we want to install stex as a real + ;; package so it's reusable. For now: + (stex-output "/tmp") + (doc-dir (string-append stex-output + "/share/doc/" + stex+version))) + (with-directory-excursion "stex" + (invoke "make" + "install" + (string-append "LIB=" + stex-output + "/lib/" + stex+version) + (string-append "Scheme=" + (assoc-ref outputs "out") + "/bin/scheme")) + (for-each (lambda (pth) + (install-file pth doc-dir)) + '("ReadMe" ; includes the license + "doc/stex.html" + "doc/stex.css" + "doc/stex.pdf")) + #t)))) + ;; Building the documentation requires stex and a running scheme. + ;; FIXME: this is probably wrong for cross-compilation + (add-after 'prepare-stex 'install-doc + (lambda* (#:key native-inputs inputs outputs #:allow-other-keys) + (let* ((chez+version (strip-store-file-name + (assoc-ref outputs "out"))) + (stex+version + (strip-store-file-name + (assoc-ref (or native-inputs inputs) "stex"))) + (scheme (string-append (assoc-ref outputs "out") + "/bin/scheme")) + ;; see note on stex-output in phase build-stex, above: + (stexlib (string-append "/tmp" + "/lib/" + stex+version)) + (doc-dir (string-append (assoc-ref outputs "doc") + "/share/doc/" + chez+version))) + (define* (stex-make #:optional (suffix "")) + (invoke "make" + "install" + (string-append "Scheme=" scheme) + (string-append "STEXLIB=" stexlib) + (string-append "installdir=" doc-dir suffix))) + (with-directory-excursion "csug" + (stex-make "/csug")) + (with-directory-excursion "release_notes" + (stex-make "/release_notes")) + (with-directory-excursion doc-dir + (symlink "release_notes/release_notes.pdf" + "release_notes.pdf") + (symlink "csug/csug9_5.pdf" + "csug.pdf")) + #t)))))) + ;; Chez Scheme does not have a MIPS backend. + ;; FIXME: Debian backports patches to get armhf working. + ;; We should too. It is the Chez machine type arm32le + ;; (no threaded version upstream yet, though there is in + ;; Racket's fork), more specifically (per the release notes) ARMv6. (supported-systems (fold delete %supported-systems '("mips64el-linux" "armhf-linux"))) (home-page "https://cisco.github.io/ChezScheme/") diff --git a/gnu/packages/chromium.scm b/gnu/packages/chromium.scm index de7c887061..835e9e2050 100644 --- a/gnu/packages/chromium.scm +++ b/gnu/packages/chromium.scm @@ -21,8 +21,6 @@ #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix gexp) - #:use-module (guix store) - #:use-module (guix monads) #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix utils) @@ -305,7 +303,7 @@ (string-append "ungoogled-chromium-" category "-" name)))) (sha256 (base32 hash)))) -(define %ungoogled-revision "89.0.4389.90-1") +(define %ungoogled-revision "89.0.4389.114-1") (define %debian-revision "debian/84.0.4147.105-1") (define %debian-patches @@ -325,7 +323,7 @@ %ungoogled-revision))) (sha256 (base32 - "0pr756d1b4wc67d61b21yszi7mx1hsjy14i44j0kvcwm05pgnf79")))) + "0cr2i51gxhgl55c8f9w0ra3m5q2dk03sf7p2qn4bqq1l1l72hw6s")))) (define %guix-patches (list (local-file @@ -466,7 +464,7 @@ ".tar.xz")) (sha256 (base32 - "16i7bgk2jbcqs2p28nk5mlf0k6wah594pcsfm8b154nxbyf0iihi")) + "007df9p78bbmk3iyfi8qn57mmn68qqrdhx6z8n2hl8ksd7lspw7j")) (modules '((guix build utils))) (snippet (force ungoogled-chromium-snippet)))) (build-system gnu-build-system) diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm index e0c7238f2b..8d93513332 100644 --- a/gnu/packages/ci.scm +++ b/gnu/packages/ci.scm @@ -25,49 +25,38 @@ #:use-module ((guix licenses) #:prefix l:) #:use-module (gnu packages) #:use-module (guix packages) + #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix download) #:use-module (gnu packages autotools) #:use-module (gnu packages base) + #:use-module (gnu packages boost) + #:use-module (gnu packages check) #:use-module (gnu packages docbook) #:use-module (gnu packages compression) #:use-module (gnu packages databases) #:use-module (gnu packages guile) #:use-module (gnu packages guile-xyz) #:use-module (gnu packages gnupg) + #:use-module (gnu packages lisp-xyz) #:use-module (gnu packages mail) #:use-module (gnu packages package-management) #:use-module (gnu packages perl) #:use-module (gnu packages perl-compression) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages serialization) + #:use-module (gnu packages sqlite) #:use-module (gnu packages tls) #:use-module (gnu packages texinfo) #:use-module (gnu packages version-control) #:use-module (gnu packages web) #:use-module (gnu packages xml) + #:use-module (guix build-system cmake) #:use-module (guix build-system gnu)) -(define-public guile-mastodon-dev - (let ((commit "88115d85221876b1baea4accb7c76995da32f479") - (revision "1")) - (package - (inherit guile-mastodon) - (name "guile-mastodon") - (version (git-version "0.0.1" revision commit)) - (home-page "https://framagit.org/mothacehe/guile-mastodon.git") - (source (origin - (method git-fetch) - (uri (git-reference - (url home-page) - (commit commit))) - (sha256 - (base32 - "04dgxliz9bmhn0f7h1n0dj0r5h0fzhg80nxl1rpbxh4zs1yw9qvj")) - (file-name (string-append name "-" version "-checkout"))))))) - (define-public cuirass - (let ((commit "6f4a203a0bb2d441d091d561c1735fbe2d170cf7") - (revision "2")) + (let ((commit "922cc66089035d4dbc277df06366e41a0806bffb") + (revision "11")) (package (name "cuirass") (version (git-version "1.0.0" revision commit)) @@ -80,17 +69,29 @@ (file-name (git-file-name name version)) (sha256 (base32 - "120cnnjy4j2dinfmas1ddmqzzc7ikj9c76sl4li6g6dn8g7s8f69")))) + "1kanag19dvaqpij7j6gznsfzajc5iir9qj6vq016bc4al5x6ggj4")))) (build-system gnu-build-system) (arguments - '(#:modules ((guix build utils) + `(#:modules ((guix build utils) (guix build gnu-build-system) (ice-9 rdelim) (ice-9 popen)) #:configure-flags '("--localstatedir=/var") ;for /var/log/cuirass + ;; XXX: HTTP tests fail on aarch64 due to Fibers errors, disable them + ;; on that architecture for now. + #:tests? ,(let ((s (or (%current-target-system) + (%current-system)))) + (not (string-prefix? "aarch64" s))) #:parallel-tests? #f #:phases (modify-phases %standard-phases + (add-before 'bootstrap 'fix-version-gen + (lambda _ + (patch-shebang "build-aux/git-version-gen") + + (call-with-output-file ".tarball-version" + (lambda (port) + (display ,version port))))) (add-before 'check 'set-PATH-for-tests (lambda* (#:key inputs #:allow-other-keys) (let ((pg (assoc-ref inputs "ephemeralpg")) @@ -158,7 +159,7 @@ ("guile-squee" ,guile-squee) ("guile-git" ,guile-git) ("guile-zlib" ,guile-zlib) - ("guile-mastodon" ,guile-mastodon-dev) + ("guile-mastodon" ,guile-mastodon) ("gnutls" ,gnutls) ("mailutils" ,mailutils) ;; FIXME: this is propagated by "guile-git", but it needs to be among @@ -186,5 +187,120 @@ (description "Cuirass is a continuous integration tool using GNU Guix. It is intended as a replacement for Hydra.") - (home-page "https://www.gnu.org/software/guix/") + (home-page "https://guix.gnu.org/cuirass/") (license l:gpl3+)))) + +(define-public laminar + (package + (name "laminar") + (version "1.0") + (source + (origin (method url-fetch) + (uri (string-append "https://github.com/ohwgiles/laminar/archive/" + version + ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "11m6h3rdmj2rsmsryy7r40gqccj4gg1cnqwy6blscs87gx4s423g")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; TODO Can't build tests + #:configure-flags + (list "-DCMAKE_CXX_STANDARD=17" + ;; "-DBUILD_TESTS=true" TODO: objcopy: js/stPskyUS: can't add + ;; section '.note.GNU-stack': file format not recognized + (string-append "-DLAMINAR_VERSION=" ,version)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-CMakeLists.txt + (lambda _ + (substitute* "CMakeLists.txt" + (("file\\(DOWNLOAD.*\n$") + "# file download removed by Guix --") + (("install\\(FILES etc/laminar.service DESTINATION \\$\\{SYSTEMD\\_UNITDIR\\}\\)") + "") + (("install\\(FILES \\$\\{CMAKE\\_CURRENT\\_BINARY\\_DIR\\}\\/laminar\\.service DESTINATION \\$\\{SYSTEMD\\_UNITDIR\\}\\)") + "") + (("install\\(FILES etc/laminar\\.conf DESTINATION \\/etc\\)") "") + (("\\/usr\\/") "")) + #t)) + (add-after 'configure 'copy-in-javascript-and-css + (lambda* (#:key inputs outputs #:allow-other-keys) + (use-modules (ice-9 popen)) + + (mkdir-p "../build/js") + (for-each (lambda (name) + (let* ((file + (assoc-ref inputs (string-append name ".js"))) + (port + (open-pipe* OPEN_READ "uglify-js" file)) + (destination + (string-append + "../build/js/" name ".min.js"))) + + (call-with-output-file destination + (lambda (output-port) + (dump-port port output-port))) + + (let ((exit (close-pipe port))) + (unless (zero? exit) + (error "uglify-js failed" exit))))) + + '("vue" + "vue-router" + "Chart")) + + ;; ansi_up.js isn't minified + (copy-file (assoc-ref inputs "ansi_up.js") + "../build/js/ansi_up.js") + + #t))))) + (inputs + `(("capnproto" ,capnproto) + ("rapidjson" ,rapidjson) + ("sqlite" ,sqlite) + ("boost" ,boost) + ("zlib" ,zlib))) + (native-inputs + `(("googletest" ,googletest) + ("uglify-js" ,uglify-js) + + ("vue.js" + ,(origin (method url-fetch) + (uri (string-append "https://raw.githubusercontent.com/" + "vuejs/vue/v2.6.12/dist/vue.js")) + (sha256 + (base32 + "1mq2dn6yqbmzar77xf4x2bvvanf9xc9nwfq06sksl5zmr300m7qm")))) + ("vue-router.js" + ,(origin (method url-fetch) + (uri (string-append "https://raw.githubusercontent.com/" + "vuejs/vue-router/v3.4.8/dist/vue-router.js")) + (sha256 + (base32 + "1hkrbgzhpnrsb4zdafslqagy1vkac6bkdj7kh49js2lhkp9z4nj5")))) + ("ansi_up.js" + ,(origin (method url-fetch) + (uri (string-append "https://raw.githubusercontent.com/" + "drudru/ansi_up/v1.3.0/ansi_up.js")) + (sha256 + (base32 + "1993dywxqi2ylnxybwk7m0s0bg2bq7kfllpyr0s8ck6chd0p8i6r")))) + ("Chart.js" + ,(origin (method url-fetch) + (uri (string-append "https://github.com/chartjs/Chart.js/" + "releases/download/v2.7.2/Chart.js")) + (sha256 + (base32 + "05m3gk6hqjx92j20drnk7q075qpjraywqaf25lnglmsgsgpiqsr7")))))) + (synopsis "Lightweight continuous integration service") + (description + "Laminar is a lightweight and modular continuous integration service. It +doesn't have a configuration web UI instead uses version-controllable +configuration files and scripts. + +Laminar encourages the use of existing tools such as bash and cron instead of +reinventing them.") + (home-page "https://laminar.ohwg.net/") + (license l:gpl3+))) diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm index 4e30dacdf4..a79d8b4a2b 100644 --- a/gnu/packages/code.scm +++ b/gnu/packages/code.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2015, 2018, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2015, 2018, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> @@ -180,7 +180,7 @@ around in a large, deeply nested project.") (version "2.26") (source (origin (method url-fetch) - (uri (string-append "http://www.dwheeler.com/sloccount/sloccount-" + (uri (string-append "https://dwheeler.com/sloccount/sloccount-" version ".tar.gz")) (sha256 (base32 @@ -221,7 +221,7 @@ around in a large, deeply nested project.") #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))))) (inputs `(("perl" ,perl))) - (home-page "http://www.dwheeler.com/sloccount/") + (home-page "https://dwheeler.com/sloccount/") (synopsis "Count physical source lines of code (SLOC)") (description "SLOCCount is a set of the programs for counting source lines of diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index e28b78a3fa..174aaf71e4 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -7,7 +7,7 @@ ;;; Copyright © 2015, 2016, 2017, 2018, 2020 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2017, 2018 Leo Famulari <leo@famulari.name> ;;; Copyright © 2015 Jeff Mickey <j@codemac.net> -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2016–2021 Tobias Geerinckx-Rice <me@tobias.gr> @@ -2072,7 +2072,8 @@ decompression is a little bit slower.") version "/upx-" version "-src.tar.xz")) (sha256 (base32 - "051pk5jk8fcfg5mpgzj43z5p4cn7jy5jbyshyn78dwjqr7slsxs7")))) + "051pk5jk8fcfg5mpgzj43z5p4cn7jy5jbyshyn78dwjqr7slsxs7")) + (patches (search-patches "upx-CVE-2021-20285.patch")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl))) diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm index 2233d2e993..58345e7c33 100644 --- a/gnu/packages/cpp.scm +++ b/gnu/packages/cpp.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 Ethan R. Jones <doubleplusgood23@gmail.com> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com> ;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2019, 2020 Mathieu Othacehe <m.othacehe@gmail.com> @@ -17,6 +17,8 @@ ;;; Copyright © 2020, 2021 Greg Hogan <code@greghogan.com> ;;; Copyright © 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Milkey Mouse <milkeymouse@meme.institute> +;;; Copyright © 2021 Raghav Gururajan <rg@raghavgururajan.name> + ;;; ;;; This file is part of GNU Guix. ;;; @@ -37,6 +39,7 @@ #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix utils) #:use-module (guix git-download) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) @@ -45,6 +48,7 @@ #:use-module (gnu packages) #:use-module (gnu packages autotools) #:use-module (gnu packages boost) + #:use-module (gnu packages build-tools) #:use-module (gnu packages c) #:use-module (gnu packages check) #:use-module (gnu packages code) @@ -59,12 +63,14 @@ #:use-module (gnu packages llvm) #:use-module (gnu packages logging) #:use-module (gnu packages maths) + #:use-module (gnu packages onc-rpc) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages popt) #:use-module (gnu packages pretty-print) #:use-module (gnu packages tls) - #:use-module (gnu packages web)) + #:use-module (gnu packages web) + #:use-module (gnu packages xml)) (define-public range-v3 (package @@ -267,7 +273,7 @@ combination of these streams.") (define-public xsimd (package (name "xsimd") - (version "7.4.9") + (version "7.4.10") (source (origin (method git-fetch) @@ -275,7 +281,7 @@ combination of these streams.") (url "https://github.com/QuantStack/xsimd") (commit version))) (sha256 - (base32 "11by8gbshm4vv6flqp0ihff8c6nmbaqq7ms93b38rrq68bigcply")) + (base32 "097yvxrxdldi5s5m4nsxv8f4gwv9xj42mqig98a1z3hkjj1j2gn5")) (file-name (git-file-name name version)))) (build-system cmake-build-system) (arguments @@ -482,7 +488,7 @@ tools (containers, algorithms) used by other QuantStack packages.") (define-public ccls (package (name "ccls") - (version "0.20201025") + (version "0.20201219") (source (origin (method git-fetch) @@ -490,8 +496,7 @@ tools (containers, algorithms) used by other QuantStack packages.") (url "https://github.com/MaskRay/ccls") (commit version))) (sha256 - (base32 - "13v00q1bz8g0ckw1sv0zyicbc44irc00vhwxdv3vvwlvylm7s21p")) + (base32 "0nkg92rgb1x6scpiwdamfrd1ag87j7ajxyn5qi861r916m5mh9m8")) (file-name (git-file-name name version)))) (build-system cmake-build-system) (arguments @@ -1015,3 +1020,194 @@ Linear Congruential Generator (LCG) with a permutation function to increase output randomness while retaining speed, simplicity, and conciseness.") (home-page "https://www.pcg-random.org") (license (list license:expat license:asl2.0))))) ; dual licensed + +(define-public libcutl + (package + (name "libcutl") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://www.codesynthesis.com/download/libcutl/" + (version-major+minor version) + "/libcutl-" version ".tar.bz2")) + (sha256 + (base32 + "070j2x02m4gm1fn7gnymrkbdxflgzxwl7m96aryv8wp3f3366l8j")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove bundled sources. + (with-directory-excursion "cutl/details" + (for-each delete-file-recursively + ;; FIXME: Boost_RegEx isn't being detected. + (list + ;;"boost" + "expat"))))))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags (list "--disable-static" + ;;"--with-external-boost" + "--with-external-expat"))) + (inputs + `(;;("boost ,boost) + ("expat" ,expat))) + (home-page "https://www.codesynthesis.com/projects/libcutl/") + (synopsis "C++ utility library with generic and independent components") + (description "libcutl is a C++ utility library. It contains a collection +of generic and independent components such as meta-programming tests, smart +pointers, containers, compiler building blocks, etc.") + (license (list license:expat ;everything except... + license:boost1.0)))) ;...the files under cutl/details/boost + +(define-public libxsd-frontend + (package + (name "libxsd-frontend") + (version "2.0.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.codesynthesis.com/download/" + "libxsd-frontend/" (version-major+minor version) + "/libxsd-frontend-" version ".tar.bz2")) + (sha256 + (base32 "1nmzchsvwvn66jpmcx18anzyl1a3l309x1ld4zllrg37ijc31fim")))) + (build-system gnu-build-system) + (arguments + `(#:test-target "test" + #:imported-modules ((guix build copy-build-system) + ,@%gnu-build-system-modules) + #:modules (((guix build copy-build-system) #:prefix copy:) + (guix build gnu-build-system) + (guix build utils)) + #:make-flags (list (string-append "--include-dir=" + (assoc-ref %build-inputs "build") + "/include/")) + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda args + (apply (assoc-ref copy:%standard-phases 'install) + #:install-plan + '(("xsd-frontend" "include/xsd-frontend" + #:include-regexp ("\\.?xx$")) + ("xsd-frontend" "lib" + #:include-regexp ("\\.so$"))) + args)))))) + (native-inputs + `(("build" ,build))) + (inputs + `(("libcutl" ,libcutl) + ("libxerces-c" ,xerces-c))) + (synopsis "XSD Front-end") + (description "@code{libxsd-frontend} is a compiler frontend for the W3C +XML Schema definition language. It includes a parser, semantic graph types +and a traversal mechanism.") + (home-page "https://www.codesynthesis.com/projects/libxsd-frontend/") + (license license:gpl2+))) + +(define-public cli + (package + (name "cli") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.codesynthesis.com/download/" + "cli/" (version-major+minor version) + "/cli-" version ".tar.bz2")) + (sha256 + (base32 "0bg0nsai2q4h3mldpnj0jz4iy4svs0bcfvmq0v0c9cdyknny606g")))) + (build-system gnu-build-system) + (arguments + `(#:test-target "test" + #:make-flags (list (string-append "--include-dir=" + (assoc-ref %build-inputs "build") + "/include") + (string-append "install_prefix=" + (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch + (lambda _ + (substitute* (find-files "." "\\.make$") + (("build-0\\.3") + (string-append (assoc-ref %build-inputs "build") + "/include/build-0.3"))) + ;; Add the namespace prefix, to avoid errors such as "error: + ;; ‘iterate_and_dispatch’ was not declared in this scope". + (substitute* (find-files "." "\\.?xx$") + (("add \\(typeid \\(type\\), \\*this\\);" all) + (string-append "traverser_map<B>::" all)) + (("iterate_and_dispatch \\(s\\.names_begin.*;" all) + (string-append "edge_dispatcher::" all))))) + (delete 'configure)))) + (native-inputs + `(("build" ,build))) + (inputs + `(("libcutl" ,libcutl))) + (synopsis "C++ Command Line Interface (CLI) definition language") + (description "@code{cli} is a domain-specific language (DSL) for defining +command line interfaces of C++ programs. It allows you to describe the +options that your program supports, their types, default values, and +documentation.") + (home-page "https://codesynthesis.com/projects/cli/") + (license license:expat))) + +(define-public xsd + (package + (name "xsd") + (version "4.0.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.codesynthesis.com/download/" + "xsd/" (version-major+minor version) + "/xsd-" version ".tar.bz2")) + (sha256 + (base32 "1hi9ppxd34np8ydv1h0vgc2qpdmgcd1cdzgk30aidv670xjg91fx")))) + (build-system gnu-build-system) + (outputs '("out" "doc")) ;3.8 MiB of doc and examples + (arguments + `(#:test-target "test" + #:make-flags (list (string-append "--include-dir=" + (assoc-ref %build-inputs "build") + "/include/") + (string-append "install_prefix=" + (assoc-ref %outputs "out"))) + #:phases (modify-phases %standard-phases + (add-after 'install 'move-doc + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (doc (assoc-ref outputs "doc"))) + (mkdir-p (string-append doc "/share/doc")) + (rename-file (string-append out "/share/doc/xsd") + (string-append doc "/share/doc/xsd-" + ,version))))) + (delete 'configure)))) + (native-inputs + `(("build" ,build) + ("cli" ,cli))) + (inputs + `(("libcutl" ,libcutl) + ("libnsl" ,libnsl) + ("libxsd-frontend" ,libxsd-frontend))) + (propagated-inputs + ;; The code XSD generates requires the following library at run time; + ;; propagate it for convenience. + `(("xerces-c" ,xerces-c))) + (synopsis "XML Data Binding for C++") + (description "CodeSynthesis XSD (also known as libxsd or xsdcxx) is an XML +Schema to C++ data binding compiler. Provided with an XML instance +specification (XML Schema), it generates C++ classes that represent the given +vocabulary as well as XML parsing and serialization code. The data stored in +XML can then be accessed using types and functions that semantically +correspond to an application domain rather than dealing with the intricacies +of reading and writing XML.") + (home-page "https://codesynthesis.com/projects/xsd/") + ;; Exceptions are made to allow using the generated source files as well + ;; as the libxsd library in free software projects whose license is + ;; incompatible with the GPL v2. Refer to the file named FLOSSE for the + ;; details. + (license license:gpl2+))) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b9842ca954..6f931f06c2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com> -;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org> +;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com> @@ -33,6 +33,7 @@ ;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com> ;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com> +;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -155,14 +156,14 @@ automatically pruning objects to maintain the constraints.") (define-public r-diffobj (package (name "r-diffobj") - (version "0.3.3") + (version "0.3.4") (source (origin (method url-fetch) (uri (cran-uri "diffobj" version)) (sha256 (base32 - "1x3d5sk8mk0s2d7dq8wxi1zv6krlx33n22ls2jwnb58b8xrmakj1")))) + "1z4yhfasjpi9rxl1lh9bny7yvs947a6hhc768azc1wwad748mk9q")))) (properties `((upstream-name . "diffobj"))) (build-system r-build-system) (propagated-inputs `(("r-crayon" ,r-crayon))) @@ -392,13 +393,13 @@ variables.") (define-public r-ggpmisc (package (name "r-ggpmisc") - (version "0.3.8-1") + (version "0.3.9") (source (origin (method url-fetch) (uri (cran-uri "ggpmisc" version)) (sha256 (base32 - "0kcrh73nwha52vl6z35wafmqs5lsdh2p4nqvi2ir70cv1k5y46zf")))) + "0nb0lpwqph9334s9sq77mk3nd22icy9d9hywz4awhf6nvp5rcc2v")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -500,14 +501,14 @@ higher.") (define-public r-oenb (package (name "r-oenb") - (version "0.0.1") + (version "0.0.2") (source (origin (method url-fetch) (uri (cran-uri "oenb" version)) (sha256 (base32 - "1x1jlqp6r27c4gb7wafzpmh5rq6yq61a2d395r5lsmv2g5jb4biz")))) + "1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5")))) (properties `((upstream-name . "oenb"))) (build-system r-build-system) (propagated-inputs @@ -926,14 +927,14 @@ package is a port of the Python package @code{cssselect}.") (define-public r-reprex (package (name "r-reprex") - (version "1.0.0") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "reprex" version)) (sha256 (base32 - "07nzx0fdl48jw95ipx17ql0l13q60yl3rjrkj1m375wrc7h1v5nx")))) + "1lcnxczy28n4g3rvph09va7svcznfyqa7zdggklqb924qvy7flwh")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -944,6 +945,7 @@ package is a port of the Python package @code{cssselect}.") ("r-knitr" ,r-knitr) ("r-rlang" ,r-rlang) ("r-rmarkdown" ,r-rmarkdown) + ("r-rstudioapi" ,r-rstudioapi) ("r-withr" ,r-withr))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -982,14 +984,14 @@ same time tries to group instances from the same class together.") (define-public r-callr (package (name "r-callr") - (version "3.5.1") + (version "3.6.0") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "15l6ppsxdadlnl4fk0f8bvf327n8izk96px5d08m1ay9iij8qcyf")))) + "050s7l1ipi6snbj6xnk052l6acycnxjyzv84026adw5x8kki0yz6")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) @@ -1057,6 +1059,25 @@ the embedded @code{RapidXML} C++ library.") into a pipeline of data manipulation and visualisation.") (license license:gpl3))) +(define-public r-hmm + (package + (name "r-hmm") + (version "1.0") + (source (origin + (method url-fetch) + (uri (cran-uri "HMM" version)) + (sha256 + (base32 + "0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw")))) + (properties `((upstream-name . "HMM"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/HMM/") + (synopsis "Hidden Markov Models") + (description "This package provides an easy to use library to setup, apply +and make inference with discrete time and discrete space hidden Markov +models.") + (license license:gpl2+))) + (define-public r-httpuv (package (name "r-httpuv") @@ -2838,31 +2859,6 @@ where the bound function accepts additional arguments.") bindings that call a C++ function.") (license license:expat))) -(define-public r-bisquerna - (package - (name "r-bisquerna") - (version "1.0.4") - (source (origin - (method url-fetch) - (uri (cran-uri "BisqueRNA" version)) - (sha256 - (base32 - "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2")))) - (properties `((upstream-name . "BisqueRNA"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-limsolve" ,r-limsolve))) - (home-page "https://www.biorxiv.org/content/10.1101/669911v1") - (synopsis "Decomposition of bulk expression with single-cell sequencing") - (description "This package provides tools to accurately estimate cell type -abundances from heterogeneous bulk expression. A reference-based method -utilizes single-cell information to generate a signature matrix and -transformation of bulk expression for accurate regression based estimates. -A marker-based method utilizes known cell-specific marker genes to measure -relative abundances across samples.") - (license license:gpl3))) - (define-public r-auc (package (name "r-auc") @@ -3792,7 +3788,7 @@ statistics/methods are implemented.") (uri (cran-uri "SuppDists" version)) (sha256 (base32 - "01j6p94m1g363nph2158fq2rmd6z3h5dvcv6aidh2d6syw131xak")))) + "1i3iq12a5x5k49ac01mikzcrrq9gc148xq3m08h4xm07bha6f2v8")))) (properties `((upstream-name . "SuppDists"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/SuppDists") @@ -4246,19 +4242,21 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.0.12") + (version "2.1.3") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "0k5dw5nb7kx7f21b0z01dry99qcpnk7iaicv7xq9d35wv2hx8wca")))) + "1ibh1ivr280wpmk3qjgm715dk79wx0ikjl9jjjcqs03q6vz4wmdx")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) ("r-mnormt" ,r-mnormt) ("r-nlme" ,r-nlme))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/psych/") (synopsis "Procedures for psychological, psychometric, and personality research") (description @@ -4299,14 +4297,14 @@ by base R methods related to model fitting.") (define-public r-broom (package (name "r-broom") - (version "0.7.5") + (version "0.7.6") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "1qjyl5b100bsakm48w1vi3819lkpys7vb86n1sv9h4y2wr1c4jmw")))) + "1ljcl8mh0yqxw3qxzar482qwbxbcaim1x6y1wm82ws12pfdw0j8n")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -4789,14 +4787,14 @@ structure.") (define-public r-vioplot (package (name "r-vioplot") - (version "0.3.5") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "vioplot" version)) (sha256 (base32 - "0aiy615kn9lpr2cs757g3pklg81n01yhqh0wrwv111fn3cy86r0v")))) + "15vmrm9gwdhfg8mnq8rsg7m59kzc9h53cv96am4ds1dkm56w4n6p")))) (build-system r-build-system) (propagated-inputs `(("r-sm" ,r-sm) @@ -5072,18 +5070,17 @@ plots in @code{ggplot2}.") (define-public r-cli (package (name "r-cli") - (version "2.3.1") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "1jh64ixn6mg2ap1sx4azrxkjnlsyjbfxyc9zjkx8m9dlakgf4v2i")))) + "0l1s9yv23bc7mm0hfdlamgz4wjfrisv8aylr65ihjs98jsynrkg3")))) (build-system r-build-system) (propagated-inputs - `(("r-assertthat" ,r-assertthat) - ("r-glue" ,r-glue))) + `(("r-glue" ,r-glue))) (home-page "https://github.com/r-lib/cli#readme") (synopsis "Helpers for developing command line interfaces") (description "This package provides a suite of tools designed to build @@ -5135,13 +5132,13 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.4.5") + (version "3.5.1") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 - (base32 "055v2gdrgqsfy8s672wsq79bqr44b4jjmcbqivx4p2d6lqx10s73")))) + (base32 "1z7zag7g041xlhzhkdfl33y2phc877h1pwj9k69p69b967qi6p6k")))) (build-system r-build-system) (propagated-inputs `(("r-ps" ,r-ps) @@ -5347,18 +5344,17 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.3.6") + (version "0.3.7") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "09ddxgzyah7lw42hn6n8fynsixf43s10jamsf94d2aidky63czfz")))) + "03hyxk3x635xfdn2x707gygdb2xk0cayl1nl44zib9bwqyyb7nas")))) (build-system r-build-system) (propagated-inputs - `(("r-digest" ,r-digest) - ("r-ellipsis" ,r-ellipsis) + `(("r-ellipsis" ,r-ellipsis) ("r-glue" ,r-glue) ("r-rlang" ,r-rlang))) (native-inputs @@ -5436,14 +5432,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.30") + (version "0.31") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "0dk6mpszwh1m65b0wfwjlcvpzywmasf6p31niqiq53wnd92my0gw")))) + "04a3ncaxix30n9m73slpsn1idxv7j1f7fy3nhxpvkk514x9rgg0p")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -5751,14 +5747,14 @@ sapa R packages.") (define-public r-sapa (package (name "r-sapa") - (version "2.0-2") + (version "2.0-3") (source (origin (method url-fetch) (uri (cran-uri "sapa" version)) (sha256 (base32 - "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds")))) + "0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc")))) (build-system r-build-system) (propagated-inputs `(("r-ifultools" ,r-ifultools) @@ -6730,14 +6726,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).") (define-public r-arules (package (name "r-arules") - (version "1.6-6") + (version "1.6-7") (source (origin (method url-fetch) (uri (cran-uri "arules" version)) (sha256 (base32 - "1pk3jjizn2m5rwi7qkdkbq9f07acgpy0qdzzqmx0agg47cwahlkm")))) + "0m80kndfbannw8h53nqdd5wl8h33q2z259aa1cp1nwadaxf9fc1q")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -7255,14 +7251,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-rastervis (package (name "r-rastervis") - (version "0.50") + (version "0.50.1") (source (origin (method url-fetch) (uri (cran-uri "rasterVis" version)) (sha256 (base32 - "0m7fjd53apxim0d0rjnyzc28vmfcg4spcrn0zbnk8llillxji1hi")))) + "1fkmyllydnmk3j2cmgf86r91wyxf2kh573x8bkck7wgkfniw4h7w")))) (properties `((upstream-name . "rasterVis"))) (build-system r-build-system) (propagated-inputs @@ -7314,14 +7310,14 @@ those searches and pull data into their R sessions.") (define-public r-renv (package (name "r-renv") - (version "0.13.0") + (version "0.13.2") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "16n2dz9jibc03f7q1wrzxss6l5jmaks7m2lnli9dz9anvcmxbdia")))) + "0jlsf6vfvqhr4i35xy3xf1ixkfillivzy3wbpl6ca9vyjpnhiwj1")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (native-inputs @@ -7885,14 +7881,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") (define-public r-rbibutils (package (name "r-rbibutils") - (version "2.0") + (version "2.1") (source (origin (method url-fetch) (uri (cran-uri "rbibutils" version)) (sha256 (base32 - "1vfg2188i4dyhrmvnwpsh2la8qkd4wkryz2fpj4cppi1wfz3ml83")))) + "13phw0dk3p3s1z45ff7dbqnn27zws1209mp3d4763zh7xnsdsl44")))) (properties `((upstream-name . "rbibutils"))) (build-system r-build-system) (home-page "https://geobosh.github.io/rbibutils/") @@ -7933,14 +7929,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.17") + (version "0.3.18") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "1apg0dh1zfhrqcbbmm8318l40gyjbqc2l9sdvwxx7qi8mzc1mqvw")))) + "1j3bv4j8x5ijj0j447vpdsk4p8pl3ncwdwnns6n3plfrqgsf3vsg")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) @@ -8194,14 +8190,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.13.1") + (version "0.13.2") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1la4yxzfl9fnknamnaziil6gvpdzl78z16lfzis9jgzg8r9q0y5l")))) + "03b7kd17h25mi1si40ibcp3jpasyqpj51mr8js0ywywyfw7909j1")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -9561,10 +9557,10 @@ singular or ill-conditioned Jacobian.") `((upstream-name . "PhysicalActivity"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/PhysicalActivity/") - (synopsis "Procesing accelerometer data for physical activity measurement") + (synopsis "Processing accelerometer data for physical activity measurement") (description "This @code{r-physicalactivity} package provides a function @code{wearingMarking} -for classification of monitor wear and nonwear time intervals in accelerometer +for classification of monitored wear and nonwear time intervals in accelerometer data collected to assess physical activity. The package also contains functions for making plots of accelerometer data and obtaining the summary of various information including daily monitor wear time and the mean monitor wear time @@ -9691,14 +9687,14 @@ samples is large and the number of mixture components is not too large.") (define-public r-magick (package (name "r-magick") - (version "2.7.0") + (version "2.7.1") (source (origin (method url-fetch) (uri (cran-uri "magick" version)) (sha256 (base32 - "0m1kij6pp7dmsrhl80h60iyccjqmbbb3zdnqdc9sgy1kj1x3pscp")))) + "16svy84dq25g69axqgympsrh8dzssa1w3zz08zc8m6nprr3jqwqf")))) (build-system r-build-system) (inputs `(("imagemagick" ,imagemagick) @@ -10133,14 +10129,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.5.4") + (version "1.5.5-1") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1rbh3ls23fazrwpsam5llk3kqdzz2zvsms3i4f1cgn34ky3w8361")))) + "0l5dd71ihhs7zy6ygniy07iisgy7a1ai1w41hqf84swb0j3cl6iz")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -10423,14 +10419,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "1c5rvycaqp7zp1j6j17c84v8nlpi0w7bhfxmcha4n37m0snk1kgy")))) + "0qh8x8yi8gkb5x7zfxmb1c689k7bhc1f5947yymny34j7xdsb9s8")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight) @@ -10453,14 +10449,14 @@ results using @code{ggplot2}.") (define-public r-effectsize (package (name "r-effectsize") - (version "0.4.4") + (version "0.4.4-1") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "0mgkq12ym72ncakkjpkzkjglhksyhj3iw8v4a8fjgpf7prvn191g")))) + "02rwf3lxnzgc8yh0wridsc6lqr9s6v0cqzbk4biwnr494rvs46zb")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs @@ -10570,14 +10566,14 @@ repositories.") (define-public r-gh (package (name "r-gh") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "gh" version)) (sha256 (base32 - "1zvy3ylxvni10lhvmbm9h14mg4wlsbdbzbzviwf28jxss8749219")))) + "16xa1qb1r28f8yc6ybjrxiq2zigxj886dp9k29jpsn5091xbzkq0")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -10681,14 +10677,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "0ag2ia6cfb5drf3517lg5nhik1w0nv09a75wdy5jdciws1qra3d6")))) + "1fh72p92wj83yv1ch77jms6k1gjqfji8cmgw23vpxd0p8l9jj4h7")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -10781,14 +10777,14 @@ more information about packages, and where they were installed from.") (define-public r-remotes (package (name "r-remotes") - (version "2.2.0") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "remotes" version)) (sha256 (base32 - "1f1kdw9j1wald3fs8b3n68x1kljy07j60g3aw1aarx26ikyk9whj")))) + "0f35648bdxhvplcfj80r4hfj5w21f1s01kcz6b29d098c1mnfzb7")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -10907,14 +10903,14 @@ ways.") (define-public r-summarytools (package (name "r-summarytools") - (version "0.9.8") + (version "0.9.9") (source (origin (method url-fetch) (uri (cran-uri "summarytools" version)) (sha256 (base32 - "0n7rad6bkfn9cb99wbfzbwl5qzch48r0gafhddfcqvyh4fbn2k0j")))) + "0ig7vgjvldbndwhky1bsi38zifr9ji8xvvfqbfffplac08llvrbr")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -11298,15 +11294,17 @@ netCDF files.") (define-public r-biocmanager (package (name "r-biocmanager") - (version "1.30.10") + (version "1.30.12") (source (origin (method url-fetch) (uri (cran-uri "BiocManager" version)) (sha256 - (base32 "03n9s2vf7vgpgb5alpxwamf9xfkn32cbzngwyn6spq1bnh9a9dzk")))) + (base32 "0c2anza01pc36manj3cvycbq8p57qpq18dsimk3y3gpks70hhqf3")))) (properties `((upstream-name . "BiocManager"))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/BiocManager/") (synopsis "Access the Bioconductor project package repository") (description @@ -11723,19 +11721,21 @@ redundant complex conjugate when the input is real data.") (define-public r-tiff (package (name "r-tiff") - (version "0.1-7") + (version "0.1-8") (source (origin (method url-fetch) (uri (cran-uri "tiff" version)) (sha256 (base32 - "101n6x70fr1dhcwx53g3s8q1j4wh93y0388v1s1316f8558rxqxh")))) + "18m17g5q3nz4v4wrqxnb129b1j02873g2vknddczkklf1pvq4x2b")))) (build-system r-build-system) (inputs `(("libtiff" ,libtiff) ("libjpeg" ,libjpeg-turbo) ("zlib" ,zlib))) + (native-inputs + `(("pkg-config" ,pkg-config))) (home-page "https://www.rforge.net/tiff/") (synopsis "Read and write TIFF images") (description @@ -12637,21 +12637,24 @@ and manipulating sets of ontological terms.") (define-public r-gargle (package (name "r-gargle") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "gargle" version)) (sha256 (base32 - "0hsqn4hf935wn6vk2pwym7la4sdvy271y4cashp38pg4hkpg9zph")))) + "03y29dzz54bw9px5k8a72vmc000lcyrkc5l0izkqcciyi9ijkr3w")))) (build-system r-build-system) (propagated-inputs - `(("r-fs" ,r-fs) + `(("r-cli" ,r-cli) + ("r-fs" ,r-fs) ("r-glue" ,r-glue) ("r-httr" ,r-httr) ("r-jsonlite" ,r-jsonlite) + ("r-rappdirs" ,r-rappdirs) ("r-rlang" ,r-rlang) + ("r-rstudioapi" ,r-rstudioapi) ("r-withr" ,r-withr))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -12726,14 +12729,14 @@ limitations\" using the GNU Multiple Precision library.") (define-public r-rmpfr (package (name "r-rmpfr") - (version "0.8-2") + (version "0.8-3") (source (origin (method url-fetch) (uri (cran-uri "Rmpfr" version)) (sha256 (base32 - "007pc7fpzl2mcg3qxa2vfjip6m2dr314qjsnybkj3kdj70bszxkl")))) + "1m9wwwch9wg886147brr2zfih65yfdfs3vmfvim1w6jykycasc9a")))) (properties `((upstream-name . "Rmpfr"))) (build-system r-build-system) (inputs @@ -15151,14 +15154,14 @@ utilities for sequence data management under the ACNUC system.") (define-public r-units (package (name "r-units") - (version "0.7-0") + (version "0.7-1") (source (origin (method url-fetch) (uri (cran-uri "units" version)) (sha256 (base32 - "0kwfcrrbcwl7s50n1wp33vswqzmprh91clvakbd1jpznqpg5m3js")))) + "0wwndzjjgqj795xvx1jwa86nwd8adfiwj0pn15yyzzk9baky2axw")))) (build-system r-build-system) (inputs `(("udunits" ,udunits))) @@ -15304,14 +15307,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.9-7") + (version "0.9-8") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "175fmnnw11fjhfgjv9sn9b0jfjcqbybpgwsvv99d5yddigvw5jja")))) + "096gg2hbynn6mv3w8n69x987fklg5rrgd0d4nbqaw7vhg1jhlmqi")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -15341,14 +15344,14 @@ datum transformations.") (define-public r-spdep (package (name "r-spdep") - (version "1.1-5") + (version "1.1-7") (source (origin (method url-fetch) (uri (cran-uri "spdep" version)) (sha256 (base32 - "0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7")))) + "0sg417d95paww625663lgmk6jwhs88djqzc96gbs1hxazlf77qb1")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) @@ -15544,13 +15547,13 @@ lspec, polyclass, and polymars.") (define-public r-rms (package (name "r-rms") - (version "6.1-1") + (version "6.2-0") (source (origin (method url-fetch) (uri (cran-uri "rms" version)) (sha256 - (base32 "1zgfd60lzbakcv7x0i5k3lkw3s0xx5bzssjgangna5lq2j17cdli")))) + (base32 "1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) @@ -16288,14 +16291,14 @@ packages with Rcpp.") (define-public r-tweenr (package (name "r-tweenr") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "tweenr" version)) (sha256 (base32 - "0sq90pbln6lkc2q3zflhkxxwpqdw5dd7igrxhdnlynkdrmi83mpg")))) + "17znizh4yabh2zs9mzyr0sl6p0pw49961i61br7cl1b7v9sza18q")))) (build-system r-build-system) (propagated-inputs `(("r-farver" ,r-farver) @@ -16392,7 +16395,7 @@ sets of URLs.") (description "The aim of the ggplot2 package is to aid in visual data investigations. This focus has led to a lack of facilities for composing specialized plots. -Thi package aims to be a collection of mainly new statistics and geometries +This package aims to be a collection of mainly new statistics and geometries that fills this gap.") (license license:expat))) @@ -17202,14 +17205,14 @@ batch correction, and data correction.") (define-public r-styler (package (name "r-styler") - (version "1.3.2") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "styler" version)) (sha256 (base32 - "1waglhsy2c53qjgd2qhlzda3z0lbzbwx9fkrfhac41y6h91mgkrz")))) + "10fj4cnazicb2z9djbv5pszcmrf7wbzagbjvksffqpdc5vbbbw5x")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -17223,6 +17226,8 @@ batch correction, and data correction.") ("r-tibble" ,r-tibble) ("r-withr" ,r-withr) ("r-xfun" ,r-xfun))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/r-lib/styler") (synopsis "Non-invasive pretty printing of R code") (description @@ -17476,14 +17481,14 @@ classification and regression models.") (define-public r-dae (package (name "r-dae") - (version "3.1-32") + (version "3.1-37") (source (origin (method url-fetch) (uri (cran-uri "dae" version)) (sha256 (base32 - "126w1lb9pz8mb2ajl2vz5dj798nbifp0dypnzfgcwixif5g5bpqi")))) + "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -17515,14 +17520,14 @@ been used in the call to @code{aov}.") (define-public r-dalex (package (name "r-dalex") - (version "2.1.1") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "1dnqsml94s648w8swsrq8spddnd4mj5pl3q6xxr917w6a1jxgyfz")))) + "1qnjbhilv4jfmwqxfi9xc5ysrh8gr84a2a5imjfci7d1n3zcnryn")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs @@ -19595,14 +19600,14 @@ discussed in Reisen et al. (2017) @url{doi:10.1016/j.jspi.2017.02.008}.") (define-public r-gamlss-data (package (name "r-gamlss-data") - (version "5.1-4") + (version "6.0-1") (source (origin (method url-fetch) (uri (cran-uri "gamlss.data" version)) (sha256 (base32 - "1dgfspbmps6ipzcmw681wjdp320nm50dwsxafgrcwxndqgc7fdqd")))) + "1cjb2n5i5mnhmb5qbqycdbfg65j7nxb9s74yihqs9kpa39byrzcq")))) (properties `((upstream-name . "gamlss.data"))) (build-system r-build-system) (home-page "http://www.gamlss.org/") @@ -19616,14 +19621,14 @@ models.") (define-public r-gamlss (package (name "r-gamlss") - (version "5.3-1") + (version "5.3-4") (source (origin (method url-fetch) (uri (cran-uri "gamlss" version)) (sha256 (base32 - "1ngf6g4zixwm6ni5r0fs0f6132xd2f2a6mlski9hlqnvvwb46iwr")))) + "06mh00jjxnqwknbv777hawjk0zm81ixrp35fg59mrlqz8y3p2w3j")))) (properties `((upstream-name . "gamlss"))) (build-system r-build-system) (propagated-inputs @@ -20827,14 +20832,14 @@ API; see the package vignette for details.") (define-public r-actuar (package (name "r-actuar") - (version "3.1-1") + (version "3.1-2") (source (origin (method url-fetch) (uri (cran-uri "actuar" version)) (sha256 (base32 - "0sxn1mskh7x164f1vbrqnadgxnq7y2p3a9mlmqc0sp6cqkw9lhp9")))) + "0gaqm8bkjly2b1jkr1nqnxlp5vqvfpj0a4jd70jv4f9ndlif676y")))) (properties `((upstream-name . "actuar"))) (build-system r-build-system) (propagated-inputs `(("r-expint" ,r-expint))) @@ -20904,14 +20909,14 @@ number embedded in the file rather than the file extension.") (define-public r-imager (package (name "r-imager") - (version "0.42.7") + (version "0.42.8") (source (origin (method url-fetch) (uri (cran-uri "imager" version)) (sha256 (base32 - "1dq0rblnrmnk689bcdmml179gk9lff8x92s2npkjllgjq5q2vfpd")))) + "1kzl93l6k9i4528bbycbqxdn28mj7hnx0fbxisva859xl1wys5c5")))) (properties `((upstream-name . "imager"))) (build-system r-build-system) (inputs @@ -21053,14 +21058,14 @@ functions.") (define-public r-univoutl (package (name "r-univoutl") - (version "0.2") + (version "0.3") (source (origin (method url-fetch) (uri (cran-uri "univOutl" version)) (sha256 (base32 - "0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v")))) + "1hhpxrpmp2wbrynx9xjndnp2sccirgky2x6ksd6yk6phmk0rbzjp")))) (properties `((upstream-name . "univOutl"))) (build-system r-build-system) (propagated-inputs @@ -21268,14 +21273,14 @@ different conceptual parts of the algorithm.") (define-public r-shapes (package (name "r-shapes") - (version "1.2.5") + (version "1.2.6") (source (origin (method url-fetch) (uri (cran-uri "shapes" version)) (sha256 (base32 - "0gfpdydfysp5mwg7qmkn73s67gvh2szb40mzqrx97h41ijgcgd8s")))) + "1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66")))) (properties `((upstream-name . "shapes"))) (build-system r-build-system) (propagated-inputs @@ -22068,32 +22073,23 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "2.1.2") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy")))) + "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs - `(("r-data-table" ,r-data-table) - ("r-digest" ,r-digest) - ("r-extrafont" ,r-extrafont) - ("r-fastmatch" ,r-fastmatch) - ("r-ggplot2" ,r-ggplot2) - ("r-ggrepel" ,r-ggrepel) - ("r-jsonlite" ,r-jsonlite) + `(("r-fastmatch" ,r-fastmatch) ("r-magrittr" ,r-magrittr) ("r-matrix" ,r-matrix) - ("r-network" ,r-network) - ("r-proxyc" ,r-proxyc) ("r-rcpp" ,r-rcpp) ("r-rcpparmadillo" ,r-rcpparmadillo) ("r-rcppparallel" ,r-rcppparallel) - ("r-sna" ,r-sna) ("r-snowballc" ,r-snowballc) ("r-stopwords" ,r-stopwords) ("r-stringi" ,r-stringi) @@ -22862,14 +22858,14 @@ interesting features. iheatmapr uses the plotly library for interactivity.") (define-public r-packrat (package (name "r-packrat") - (version "0.5.0") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "packrat" version)) (sha256 (base32 - "1xy5dd2hrpqa07jfl4s7dsrya05mf36ms74j833scdz0zf89586n")))) + "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr")))) (properties `((upstream-name . "packrat"))) (build-system r-build-system) (home-page "https://github.com/rstudio/packrat/") @@ -23538,17 +23534,19 @@ appropriate dog and cat images for many status codes.") (define-public r-latex2exp (package (name "r-latex2exp") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "latex2exp" version)) (sha256 (base32 - "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw")))) + "0qknpw7zwwbzsbry94j8fn48mq7kq5rc5448g9hybbisain3wfvg")))) (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr) ("r-magrittr" ,r-magrittr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/stefano-meschiari/latex2exp/") (synopsis "Use LaTeX expressions in plots") (description "@code{latex2exp} parses and converts LaTeX math formulas to @@ -24408,14 +24406,14 @@ input.") (define-public r-lightgbm (package (name "r-lightgbm") - (version "3.1.1") + (version "3.2.0") (source (origin (method url-fetch) (uri (cran-uri "lightgbm" version)) (sha256 (base32 - "1pwsh6j9ksahh58b15j5ij56bsc6syy3z4k4a5zhy5n7829rz555")))) + "0aw1zcrg7nhddfaif9544hn8g8qcylv6vzpkf8d3kl07nzvgxkvj")))) (properties `((upstream-name . "lightgbm"))) (build-system r-build-system) (propagated-inputs @@ -24444,14 +24442,14 @@ designed to be distributed and efficient with the following goals: (define-public r-shapforxgboost (package (name "r-shapforxgboost") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "SHAPforxgboost" version)) (sha256 (base32 - "0jgyss9bawl7sf4dwa75sn7ld3mvrrr0z2074lbkq3f5qb9gwsly")))) + "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5")))) (properties `((upstream-name . "SHAPforxgboost"))) (build-system r-build-system) @@ -24462,9 +24460,10 @@ designed to be distributed and efficient with the following goals: ("r-ggforce" ,r-ggforce) ("r-ggplot2" ,r-ggplot2) ("r-ggpubr" ,r-ggpubr) - ("r-lightgbm" ,r-lightgbm) ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-xgboost" ,r-xgboost))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/liuyanguu/SHAPforxgboost") (synopsis "SHAP Plots for XGBoost") (description @@ -24796,14 +24795,14 @@ diagonals. This package allows you to compute the tensor product of arrays.") (define-public r-spatstat-utils (package (name "r-spatstat-utils") - (version "2.0-0") + (version "2.1-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.utils" version)) (sha256 (base32 - "1li0vksxpkvgyx3j2wi40kj5687vwakkfdix6icm6g01a0lb2m5d")))) + "18gqsc1a85pk69aifi10wprv1c0lci3zxp4wqjb27dlmlbz6jdgd")))) (properties `((upstream-name . "spatstat.utils"))) (build-system r-build-system) @@ -24817,14 +24816,14 @@ which may also be useful for other purposes.") (define-public r-spatstat-sparse (package (name "r-spatstat-sparse") - (version "1.2-1") + (version "2.0-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.sparse" version)) (sha256 (base32 - "1w312q7gxzchigxxzk9akscdsz66j5085lgjryamschjgp4f8yk2")))) + "1iqrpazb88s4w208adf2qgm4ajwz3kwqck65k9g5l28zw9jcxyr7")))) (properties `((upstream-name . "spatstat.sparse"))) (build-system r-build-system) @@ -24844,14 +24843,14 @@ matrix calculations that are common in statistics, such as quadratic forms.") (define-public r-spatstat-data (package (name "r-spatstat-data") - (version "2.0-0") + (version "2.1-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.data" version)) (sha256 (base32 - "1z1jb1yzb7qhfg55dhzcrdvn5x8hpg9xif0hpnapddbmhxd1hbb7")))) + "0csmz5vjaxnznkbsfah8qd3v8p0y56jvis01ialxzvf71snl160v")))) (properties `((upstream-name . "spatstat.data"))) (build-system r-build-system) (propagated-inputs @@ -24867,21 +24866,20 @@ package.") (define-public r-spatstat-geom (package (name "r-spatstat-geom") - (version "1.65-5") + (version "2.0-1") (source (origin (method url-fetch) (uri (cran-uri "spatstat.geom" version)) (sha256 (base32 - "0g0m5b3nbzpyblbp77n56k6aiw3fn23jkk72h9fhqlg1ydn2fzpk")))) + "1r7nlgh62apchidg28fxq1a22iv1b29y5xmsg1kjwfvkbq8zxsvh")))) (properties `((upstream-name . "spatstat.geom"))) (build-system r-build-system) (propagated-inputs `(("r-deldir" ,r-deldir) ("r-polyclip" ,r-polyclip) ("r-spatstat-data" ,r-spatstat-data) - ("r-spatstat-sparse" ,r-spatstat-sparse) ("r-spatstat-utils" ,r-spatstat-utils))) (home-page "http://spatstat.org/") (synopsis "Geometrical functionality of the spatstat package") @@ -24894,14 +24892,14 @@ for the geometry of linear networks.") (define-public r-spatstat-core (package (name "r-spatstat-core") - (version "1.65-5") + (version "2.0-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.core" version)) (sha256 (base32 - "0wq61sd53hwyk3fzjdc2prrr66n67zbwb5i3ii7kvyhfwx0xikm3")))) + "19wv27nfx48xkqa1amys4jf93k0d8xns20p84n5kqyibscdsksgx")))) (properties `((upstream-name . "spatstat.core"))) (build-system r-build-system) (propagated-inputs @@ -24926,14 +24924,14 @@ user-level code from spatstat, except for the code for linear networks.") (define-public r-spatstat-linnet (package (name "r-spatstat-linnet") - (version "1.65-3") + (version "2.1-1") (source (origin (method url-fetch) (uri (cran-uri "spatstat.linnet" version)) (sha256 (base32 - "1y088r26h5yv006ydgcb4iwpvnc7ql857gky0hbi7xqqciqr8wdv")))) + "1ia0qgggddiwhhyd3q516f3p6by0p4xnq26wqz7410n2ja60bbb4")))) (properties `((upstream-name . "spatstat.linnet"))) (build-system r-build-system) @@ -24953,14 +24951,14 @@ for spatial data on a linear network.") (define-public r-spatstat (package (name "r-spatstat") - (version "2.0-1") + (version "2.1-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat" version)) (sha256 (base32 - "1xq11ijc0d0lbixxb3wnvyr4gplfj2d2i64ynsa089xd525zzzbw")))) + "0vr5md53247v6crvjvg9m82vc6h914zzvkzfkga8x79hv35ii4as")))) (properties `((upstream-name . "spatstat"))) (build-system r-build-system) (propagated-inputs @@ -25014,14 +25012,14 @@ for linear mixed models (AIREML).") (define-public r-cpp11 (package (name "r-cpp11") - (version "0.2.6") + (version "0.2.7") (source (origin (method url-fetch) (uri (cran-uri "cpp11" version)) (sha256 (base32 - "118i8s7978vl9xyhnb47wcbd6rcc6b958mq2w8s3rdsd4pxv62gz")))) + "1m31yq3kn5wqvm0ahj08kb4bszbbhfybx3l2x975cjzgv3058h8x")))) (properties `((upstream-name . "cpp11"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -25199,14 +25197,14 @@ to speed up repeated queries of the same set of target points.") (define-public r-muhaz (package (name "r-muhaz") - (version "1.2.6.1") + (version "1.2.6.3") (source (origin (method url-fetch) (uri (cran-uri "muhaz" version)) (sha256 (base32 - "08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk")))) + "1lzc8arbpcxgfap3dfsgq8crpp1cxd9qlbrhvyvl79zgpxjqx4q2")))) (properties `((upstream-name . "muhaz"))) (build-system r-build-system) (propagated-inputs @@ -25671,14 +25669,14 @@ workflow. The advantages are: (define-public r-yardstick (package (name "r-yardstick") - (version "0.0.7") + (version "0.0.8") (source (origin (method url-fetch) (uri (cran-uri "yardstick" version)) (sha256 (base32 - "1yrvlhn4gxyn9f20z5yv3xam0j0a8z362jwa32r33r0g0jk5z2fq")))) + "13b0lyj2k0r568mwlyz9yvp9156rzlj4jqnjazaffh9vwqh4whir")))) (properties `((upstream-name . "yardstick"))) (build-system r-build-system) (propagated-inputs @@ -25686,7 +25684,8 @@ workflow. The advantages are: ("r-generics" ,r-generics) ("r-proc" ,r-proc) ("r-rlang" ,r-rlang) - ("r-tidyselect" ,r-tidyselect))) + ("r-tidyselect" ,r-tidyselect) + ("r-vctrs" ,r-vctrs))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tidymodels/yardstick") @@ -25725,18 +25724,19 @@ observations.") (define-public r-slider (package (name "r-slider") - (version "0.1.5") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "slider" version)) (sha256 (base32 - "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck")))) + "1jijh8f3qcn8fa677sqvgl2fb4r5vca1cw4l2vbcqscxb2hr4bqw")))) (properties `((upstream-name . "slider"))) (build-system r-build-system) (propagated-inputs - `(("r-glue" ,r-glue) + `(("r-ellipsis" ,r-ellipsis) + ("r-glue" ,r-glue) ("r-rlang" ,r-rlang) ("r-vctrs" ,r-vctrs) ("r-warp" ,r-warp))) @@ -25877,31 +25877,71 @@ for finding reasonable values of hyper-parameters in models, pre-processing methods, and post-processing steps.") (license license:expat))) +(define-public r-workflowsets + (package + (name "r-workflowsets") + (version "0.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "workflowsets" version)) + (sha256 + (base32 + "1q41isvj7hhbkx3y8k6kazpiygig92xannsz8dpklh0k3j9l3c2p")))) + (properties `((upstream-name . "workflowsets"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cli" ,r-cli) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-prettyunits" ,r-prettyunits) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-rsample" ,r-rsample) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) + ("r-tune" ,r-tune) + ("r-vctrs" ,r-vctrs) + ("r-withr" ,r-withr) + ("r-workflows" ,r-workflows))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/tidymodels/workflowsets") + (synopsis "Create a collection of tidymodels workflows") + (description + "A workflow is a combination of a model and preprocessors (e.g, a +formula, recipe, etc.). In order to try different combinations of these, an +object can be created that contains many workflows. There are functions to +create workflows en masse as well as training them and visualizing the +results.") + (license license:expat))) + (define-public r-tidyposterior (package (name "r-tidyposterior") - (version "0.0.3") + (version "0.1.0") (source (origin (method url-fetch) (uri (cran-uri "tidyposterior" version)) (sha256 (base32 - "0wsv800w056ziqbnwal7ncmdy4li8cn5yrdx07w35b7j8kl4mwhg")))) + "1h1664sjrg6akph6nrk8ynn2kjiswv6gshy35gamam1h4axf6wah")))) (properties `((upstream-name . "tidyposterior"))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-generics" ,r-generics) ("r-ggplot2" ,r-ggplot2) - ("r-lifecycle" ,r-lifecycle) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-rsample" ,r-rsample) ("r-rstanarm" ,r-rstanarm) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) - ("r-vctrs" ,r-vctrs))) + ("r-tune" ,r-tune) + ("r-vctrs" ,r-vctrs) + ("r-workflowsets" ,r-workflowsets))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://tidyposterior.tidymodels.org") @@ -26297,14 +26337,14 @@ phylogenetic relatedness) can also be conducted.") (define-public r-altmeta (package (name "r-altmeta") - (version "3.2") + (version "3.3") (source (origin (method url-fetch) (uri (cran-uri "altmeta" version)) (sha256 (base32 - "0z252lbsknqp33i0b0xf5r7spr535iq47bv40vgip6nsqhgrl7b0")))) + "1xq12hnzxh7kgv2i36xprg4lkvqfmxwz3sq4a1jlq2d5g3narvcm")))) (properties `((upstream-name . "altmeta"))) (build-system r-build-system) (propagated-inputs @@ -26359,14 +26399,14 @@ covariate (usually group indicator) and the scores.") (define-public r-qtl (package (name "r-qtl") - (version "1.47-9") + (version "1.48-1") (source (origin (method url-fetch) (uri (cran-uri "qtl" version)) (sha256 (base32 - "0hffirsvw9j82cdx6l7vhqn3a7ab52claqjlinv3lswl1nsfg93b")))) + "098mgmfj8ndi8yipr9b3f6gbbh78cgp9j7y561nlnhrnyc8bsih9")))) (build-system r-build-system) (home-page "https://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -26508,27 +26548,15 @@ other R users.") (define-public r-seurat (package (name "r-seurat") - (version "4.0.0") + (version "4.0.1") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn")))) + "17cmp9mimvykb8ny796dn1zwmvg0pwwjw1zcixyamc5q1lwnxi3p")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) - ;; This is needed because r-spatstat has been split up and there has - ;; been no new release of Seurat since then. - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-spatstat-import - (lambda _ - (substitute* "NAMESPACE" - (("importFrom\\(spatstat,markvario\\)") - "importFrom(spatstat.core,markvario)") - (("importFrom\\(spatstat,ppp\\)") - "importFrom(spatstat.geom,ppp)"))))))) (propagated-inputs `(("r-cluster" ,r-cluster) ("r-cowplot" ,r-cowplot) @@ -26569,7 +26597,8 @@ other R users.") ("r-sctransform" ,r-sctransform) ("r-seuratobject" ,r-seuratobject) ("r-shiny" ,r-shiny) - ("r-spatstat" ,r-spatstat) + ("r-spatstat-core" ,r-spatstat-core) + ("r-spatstat-geom" ,r-spatstat-geom) ("r-tibble" ,r-tibble) ("r-uwot" ,r-uwot))) (home-page "http://www.satijalab.org/seurat") @@ -26586,14 +26615,14 @@ discovery of differentially expressed genes and markers.") (define-public r-phangorn (package (name "r-phangorn") - (version "2.5.5") + (version "2.6.3") (source (origin (method url-fetch) (uri (cran-uri "phangorn" version)) (sha256 (base32 - "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5")))) + "08yqz8qlw960x4b52wzrm22f242xnpc8695pjkhy7bi1nzm303ga")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -26603,6 +26632,8 @@ discovery of differentially expressed genes and markers.") ("r-matrix" ,r-matrix) ("r-quadprog" ,r-quadprog) ("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/KlausVigo/phangorn") (synopsis "Phylogenetic analysis in R") (description @@ -26642,33 +26673,6 @@ include Markov models of discrete and continuous trait evolution and constant rate speciation and extinction.") (license license:gpl2+))) -(define-public r-absfiltergsea - (package - (name "r-absfiltergsea") - (version "1.5.1") - (source - (origin - (method url-fetch) - (uri (cran-uri "AbsFilterGSEA" version)) - (sha256 - (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) - (properties `((upstream-name . "AbsFilterGSEA"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-deseq" ,r-deseq) - ("r-limma" ,r-limma) - ("r-rcpp" ,r-rcpp) - ("r-rcpparmadillo" ,r-rcpparmadillo))) - (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") - (synopsis "Improved false positive control of gene-permuting with absolute filtering") - (description - "This package provides a function that performs gene-permuting of a gene-set -enrichment analysis (GSEA) calculation with or without the absolute filtering. - Without filtering, users can perform (original) two-tailed or one-tailed -absolute GSEA.") - (license license:gpl2))) - (define-public r-calculus (package (name "r-calculus") @@ -26889,13 +26893,13 @@ are.") (define-public r-mlr3misc (package (name "r-mlr3misc") - (version "0.7.0") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3misc" version)) (sha256 (base32 - "19k3l2d6wnqvdng0m7p54rrlvwl5457lcy7bg82m2bbpqxi8qch3")))) + "0mzicqs8rhzppyd7v3ljqs35k8pp7p2jg5cs7hx21mxr831bwsys")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -26975,13 +26979,13 @@ computational operations, add-on packages provide additional functionality.") (define-public r-mlr3learners (package (name "r-mlr3learners") - (version "0.4.3") + (version "0.4.5") (source (origin (method url-fetch) (uri (cran-uri "mlr3learners" version)) (sha256 (base32 - "1wxlpzz3hpkn77n4ag1v868dmp140j1pmrhynsv5xfgk9fg0w7ri")))) + "02v4y32yn1m0akkqzhfg65ib21rgy9iz8db4kdcrvi949clkxnfk")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) @@ -27001,14 +27005,14 @@ vector machines, and gradient boosting.") (define-public r-bbotk (package (name "r-bbotk") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "bbotk" version)) (sha256 (base32 - "1f29wxnxr73c4yp5afk05jqggpm7k1z8wiak8xsyw68h7xflq550")))) + "0bd9nxfgsj4ixpgky1mj6knb8l8nivvxpqpyw8vgpkj0za7gp4gr")))) (properties `((upstream-name . "bbotk"))) (build-system r-build-system) (propagated-inputs @@ -27330,14 +27334,14 @@ clusterings as resolution increases.") (define-public r-textshaping (package (name "r-textshaping") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "textshaping" version)) (sha256 (base32 - "0fqh4z505b2qriqcj70g2hhdgiawd3w2rs9rqxdwizz5vk8jjygx")))) + "0yl3cv6r8k27h4lzbrsikjydhz94skdjmxx4zqzihvb7h3jfnlpn")))) (properties `((upstream-name . "textshaping"))) (build-system r-build-system) (inputs @@ -27363,14 +27367,14 @@ the font tool-set provided by the @code{systemfonts} package.") (define-public r-ragg (package (name "r-ragg") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "ragg" version)) (sha256 (base32 - "0nh1xxrxgdbq9anzkc6k3n519czp9hqyiizakm3m2gl4l4w0vp0q")))) + "0q28bwjdxpxm1wlkd8sxdf1m1q8wp4mmzp83d3m09nyy90ydkd8w")))) (properties `((upstream-name . "ragg"))) (build-system r-build-system) (inputs @@ -27600,7 +27604,7 @@ in same length matches).") `(("r-data-table" ,r-data-table) ("r-slam" ,r-slam) ("r-stringi" ,r-stringi))) - (home-page "http://github.com/trinker/textshape") + (home-page "https://github.com/trinker/textshape") (synopsis "Tools for Reshaping Text") (description "Tools that can be used to reshape and restructure text data.") @@ -28031,28 +28035,30 @@ and formatted text files with additional meta-data, such including @code{.csv}, (define-public r-lwgeom (package (name "r-lwgeom") - (version "0.2-5") + (version "0.2-6") (source - (origin - (method url-fetch) - (uri (cran-uri "lwgeom" version)) - (sha256 - (base32 - "0byhjqa2acns8mznl1ngnfygxxxyszvnq66qfg0smhhhdkwr67aa")))) + (origin + (method url-fetch) + (uri (cran-uri "lwgeom" version)) + (sha256 + (base32 + "1733iwinn426bcmgjxp4j0scvbz35rvqkanmw7g7f47l6j7w14vn")))) (properties `((upstream-name . "lwgeom"))) (build-system r-build-system) - (inputs `(("geos" ,geos) ("proj" ,proj) ("sqlite" ,sqlite))) + (inputs + `(("geos" ,geos) + ("proj" ,proj) + ("sqlite" ,sqlite) + ("zlib" ,zlib))) (propagated-inputs - `(("r-rcpp" ,r-rcpp) - ("r-sf" ,r-sf) - ("r-units" ,r-units))) + `(("r-rcpp" ,r-rcpp) + ("r-sf" ,r-sf) + ("r-units" ,r-units))) (native-inputs `(("pkg-config" ,pkg-config))) - (home-page - "https://github.com/r-spatial/lwgeom/") - (synopsis - "Bindings to Selected 'liblwgeom' Functions for Simple Features") + (home-page "https://github.com/r-spatial/lwgeom/") + (synopsis "Bindings to Selected 'liblwgeom' Functions for Simple Features") (description - "Access to selected functions found in + "Access to selected functions found in @url{https://github.com/postgis/postgis/tree/master/liblwgeom,liblwgeom}, the light-weight geometry library used by @url{http://postgis.net/,PostGIS}.") (license license:gpl2))) @@ -28060,14 +28066,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.") (define-public r-stars (package (name "r-stars") - (version "0.5-1") + (version "0.5-2") (source (origin (method url-fetch) (uri (cran-uri "stars" version)) (sha256 (base32 - "0ybk899rc0rpf2cv5kwk78fvis5xnr255hfcy5khdxsxdqgl0m9j")))) + "0w2svw02ywvclq0nsnjns1n0rfr54q7x30y64y14n7zfr969ly1n")))) (properties `((upstream-name . "stars"))) (build-system r-build-system) (propagated-inputs @@ -28280,3 +28286,79 @@ functionalities for displaying text co-occurrence networks, text correlation networks, dependency relationships as well as text clustering. Feel free to join the effort of providing interesting text visualisations.") (license license:gpl2))) + +(define-public r-gsa + (package + (name "r-gsa") + (version "1.03.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "GSA" version)) + (sha256 + (base32 + "05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1")))) + (properties `((upstream-name . "GSA"))) + (build-system r-build-system) + (home-page "https://statweb.stanford.edu/~tibs/GSA/") + (synopsis "Gene set analysis") + (description "This package lets you determine the significance of +pre-defined sets of genes with respect to an outcome variable, such as a group +indicator, a quantitative variable or a survival time.") + ;; Any version of the LGPL + (license license:lgpl3+))) + +(define-public r-samr + (package + (name "r-samr") + (version "3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "samr" version)) + (sha256 + (base32 + "01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15")))) + (properties `((upstream-name . "samr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-gsa" ,r-gsa) + ("r-impute" ,r-impute) + ("r-matrixstats" ,r-matrixstats) + ("r-openxlsx" ,r-openxlsx) + ("r-shiny" ,r-shiny) + ("r-shinyfiles" ,r-shinyfiles))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://statweb.stanford.edu/~tibs/SAM/") + (synopsis "Significance analysis of Microarrays") + (description + "This is a package for significance analysis of Microarrays for +differential expression analysis, RNAseq data and related problems.") + ;; Any version of the LGPL + (license license:lgpl3+))) + +(define-public r-randomforestsrc + (package + (name "r-randomforestsrc") + (version "2.9.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "randomForestSRC" version)) + (sha256 + (base32 + "05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw")))) + (properties + `((upstream-name . "randomForestSRC"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/randomForestSRC/") + (synopsis "Random forests for survival, regression, and classification") + (description + "This package implements fast OpenMP parallel computing of Breiman's +random forests for survival, competing risks, regression and classification +based on Ishwaran and Kogalur's popular random survival forests (RSF) package. +It handles missing data and now includes multivariate, unsupervised forests, +quantile regression and solutions for class imbalanced data. It provides a +fast interface using subsampling and confidence regions for variable +importance.") + (license license:gpl3+))) diff --git a/gnu/packages/crates-graphics.scm b/gnu/packages/crates-graphics.scm index 3485e53938..cd1712dc13 100644 --- a/gnu/packages/crates-graphics.scm +++ b/gnu/packages/crates-graphics.scm @@ -1934,6 +1934,7 @@ interactive applications.") ("rust-arbitrary" ,rust-arbitrary-0.4) ("rust-arg-enum-proc-macro" ,rust-arg-enum-proc-macro-0.3) ("rust-arrayvec" ,rust-arrayvec-0.5) + ("rust-assert-cmd" ,rust-assert-cmd-1) ("rust-av-metrics" ,rust-av-metrics-0.6) ("rust-backtrace" ,rust-backtrace-0.3) ("rust-bitstream-io" ,rust-bitstream-io-1) @@ -1942,6 +1943,7 @@ interactive applications.") ("rust-cfg-if" ,rust-cfg-if-1) ("rust-clap" ,rust-clap-2) ("rust-console" ,rust-console-0.14) + ("rust-criterion" ,rust-criterion-0.3) ("rust-crossbeam" ,rust-crossbeam-0.8) ("rust-dav1d-sys" ,rust-dav1d-sys-0.3) ("rust-fern" ,rust-fern-0.6) @@ -1957,6 +1959,7 @@ interactive applications.") ("rust-num-derive" ,rust-num-derive-0.3) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-paste" ,rust-paste-1) + ("rust-pretty-assertions" ,rust-pretty-assertions-0.6) ("rust-rand" ,rust-rand-0.8) ("rust-rand-chacha" ,rust-rand-chacha-0.3) ("rust-rayon" ,rust-rayon-1) diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index ae169b8988..4d3a7d541b 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -14,7 +14,7 @@ ;;; Copyright © 2020 Antoine Côté <antoine.cote@posteo.net> ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2021 aecepoglu <aecepoglu@fastmail.fm> -;;; Copyright @ 2021 Zheng Junjie <873216071@qq.com> +;;; Copyright © 2021 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2021 Alexandru-Sergiu Marton <brown121407@posteo.ro> ;;; ;;; This file is part of GNU Guix. @@ -12978,6 +12978,26 @@ Standard.") "Streaming transcoding for encoding_rs.") (license (list license:asl2.0 license:expat)))) +(define-public rust-endian-type-0.1 + (package + (name "rust-endian-type") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "endian-type" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0bbh88zaig1jfqrm7w3gx0pz81kw2jakk3055vbgapw3dmk08ky3")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/Lolirofle/endian-type") + (synopsis "Type safe wrappers for types with a defined byte order") + (description + "This crates provides type safe wrappers for types with a defined byte +order.") + (license license:expat))) + (define-public rust-enum-as-inner-0.3 (package (name "rust-enum-as-inner") @@ -13950,7 +13970,7 @@ supported in purely NFA-based implementations.") (synopsis "Find the physical space used by a file") (description "@code{filesize} abstracts platform-specific methods of determining the -real space used by files, taking into account filesystem compression and +real space used by files, taking into account file system compression and sparse files.") (license license:expat))) @@ -17252,6 +17272,29 @@ highlighting for a large number of languages, git integration, and automatic paging.") (license (list license:expat license:asl2.0)))) +(define-public rust-hamcrest2-0.3 + (package + (name "rust-hamcrest2") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "hamcrest2" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0x8hx7jyzz2bl0wf6nir62imd26yhp6qcr7zf76cjpg05p33gy29")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-num" ,rust-num-0.2) + ("rust-regex" ,rust-regex-1)))) + (home-page "https://github.com/Valloric/hamcrest2-rust") + (synopsis "Rust port of the Hamcrest testing library") + (description + "This package provides a port of the Hamcrest testing library.") + (license (list license:expat license:asl2.0)))) + (define-public rust-handlebars-2 (package (name "rust-handlebars") @@ -18038,8 +18081,8 @@ Hash-based Message Authentication Code}.") (home-page "https://github.com/pantsman0/rust-hmac-sha1") (synopsis "Minimal implementation of HMAC-SHA1 in Rust") (description - "This package is a pure Rust implementation of the Hash-based Message -Authentication Code Algoritm (HMAC) for SHA1.") + "This package is a pure Rust implementation of the @acronym{HMAC, +Hash-based Message Authentication Code algorithm} for SHA1.") (license license:bsd-3))) (define-public rust-hostname-0.3 @@ -22313,14 +22356,13 @@ image together with its neighboring pixels.") (name "rust-lopdf") (version "0.26.0") (source - (origin - (method url-fetch) - (uri (crate-uri "lopdf" version)) - (file-name - (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "1wqnmibs8qzi6pr3ig4h3sg6bfkkgyv4ngdng81x069725r056ml")))) + (origin + (method url-fetch) + (uri (crate-uri "lopdf" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1wqnmibs8qzi6pr3ig4h3sg6bfkkgyv4ngdng81x069725r056ml")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -22328,7 +22370,7 @@ image together with its neighboring pixels.") ("rust-dtoa" ,rust-dtoa-0.4) ("rust-encoding" ,rust-encoding-0.2) ("rust-flate2" ,rust-flate2-1) - ("rust-image" ,rust-image-0.23) + ("rust-image" ,rust-image-0.20) ("rust-itoa" ,rust-itoa-0.4) ("rust-linked-hash-map" ,rust-linked-hash-map-0.5) ("rust-log" ,rust-log-0.4) @@ -22336,17 +22378,7 @@ image together with its neighboring pixels.") ("rust-nom" ,rust-nom-6) ("rust-pom" ,rust-pom-3) ("rust-rayon" ,rust-rayon-1) - ("rust-time" ,rust-time-0.2)) - #:phases (modify-phases %standard-phases - (add-before 'check 'disable-problematic-tests - (lambda _ - ;; This tests depends on the test_1_create.pdf file - ;; having created by create_document, but the file does - ;; not always exist at the time the test run (see: - ;; https://github.com/J-F-Liu/lopdf/issues/137). - (substitute* "src/parser_aux.rs" - (("fn load_and_save" all) - (string-append "#[ignore] " all)))))))) + ("rust-time" ,rust-time-0.2)))) (home-page "https://github.com/J-F-Liu/lopdf") (synopsis "Rust library for PDF document manipulation") (description @@ -24853,6 +24885,27 @@ cryptographic library.") release (fork of debug_unreachable)") (license license:expat))) +(define-public rust-nibble-vec-0.1 + (package + (name "rust-nibble-vec") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "nibble_vec" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0hsdp3s724s30hkqz74ky6sqnadhp2xwcj1n1hzy4vzkz4yxi9bp")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-smallvec" ,rust-smallvec-1)))) + (home-page "https://github.com/michaelsproul/rust_nibble_vec") + (synopsis "Vector data-structure for half-byte values") + (description "NibbleVec is a data structure for storing a sequence of half-bytes.") + (license license:expat))) + (define-public rust-nickel-0.11 (package (name "rust-nickel") @@ -24918,8 +24971,36 @@ selectors. You can use the jQuery-like syntax to query and manipulate an HTML document quickly.") (license (list license:expat license:asl2.0)))) +(define-public rust-nix-0.20 + (package + (name "rust-nix") + (version "0.20.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "nix" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "12n1syfd967hblrcrrqk63a4s1h4hsybfqwblh71rihvv8cli6zs")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bitflags" ,rust-bitflags-1) + ("rust-cc" ,rust-cc-1) + ("rust-cfg-if" ,rust-cfg-if-1) + ("rust-libc" ,rust-libc-0.2)))) + (home-page "https://github.com/nix-rust/nix") + (synopsis "Rust friendly bindings to *nix APIs") + (description + "Nix seeks to provide friendly bindings to various *nix platform APIs. +The goal is to not provide a 100% unified interface, but to unify what can be +while still providing platform specific APIs.") + (license license:expat))) + (define-public rust-nix-0.19 (package + (inherit rust-nix-0.20) (name "rust-nix") (version "0.19.1") (source @@ -24929,7 +25010,6 @@ document quickly.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 "1wk1pmaf9pv84sc4jf19gm1as2yq3ydwcx0n5nc1bpsgzq6bmk5j")))) - (build-system cargo-build-system) (arguments `(#:tests? #f ; test suite hangs #:cargo-inputs @@ -24944,14 +25024,7 @@ document quickly.") ("rust-rand" ,rust-rand-0.6) ("rust-semver" ,rust-semver-0.9) ("rust-sysctl" ,rust-sysctl-0.1) - ("rust-tempfile" ,rust-tempfile-3)))) - (home-page "https://github.com/nix-rust/nix") - (synopsis "Rust friendly bindings to *nix APIs") - (description - "Nix seeks to provide friendly bindings to various *nix platform APIs. -The goal is to not provide a 100% unified interface, but to unify what can be -while still providing platform specific APIs.") - (license license:expat))) + ("rust-tempfile" ,rust-tempfile-3)))))) (define-public rust-nix-0.18 (package @@ -31051,6 +31124,31 @@ that must be shared-mutable, but merely may use atomic instructions to do so.") radix.") (license license:asl2.0))) +(define-public rust-radix-trie-0.2 + (package + (name "rust-radix-trie") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "radix_trie" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1zaq3im5ss03w91ij11cj97vvzc5y1f3064d9pi2ysnwziww2sf0")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-endian-type" ,rust-endian-type-0.1) + ("rust-nibble-vec" ,rust-nibble-vec-0.1) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/michaelsproul/rust_radix_trie") + (synopsis "Generic radix trie data-structure") + (description + "This is a Radix Trie implementation in Rust, building on the lessons +learnt from TrieMap and Sequence Trie.") + (license license:expat))) + (define-public rust-rand-0.8 (package (name "rust-rand") @@ -31271,14 +31369,14 @@ useful types and distributions, and some randomness-related algorithms.") (define-public rust-rand-core-0.6 (package (name "rust-rand-core") - (version "0.6.1") + (version "0.6.2") (source (origin (method url-fetch) (uri (crate-uri "rand_core" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1rfjrcyaj7blz2nawv2pypm5kqc59p80n6f5pg691399iggxf9n0")))) + (base32 "1rvas1afjvd2827b8mf2ilg78h3ksl9npkrdds3wbw9x33mndkrl")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -33090,14 +33188,14 @@ MessagePack format.") (define-public rust-rocket-0.4 (package (name "rust-rocket") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (crate-uri "rocket" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1sb6i0y65hq4wy4awa14diyv19wcd1sii2mfjdlcwam3mbbfbisg")))) + (base32 "04ybnhjw92zaan92lsmx6mkhqc9cpsg3885svb3wzyj39pyzvsvz")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -33127,14 +33225,14 @@ and speed.") (define-public rust-rocket-codegen-0.4 (package (name "rust-rocket-codegen") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (crate-uri "rocket_codegen" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0n4k00fwwabvkjvnl62gwdc5v7rsg6bnmmwwiwm5bzpmdnqm94ai")))) + (base32 "18s2dll8c4sd26s8cfr6cizj5z55xwnk6r6x7b2wvcf8n9ajrb6f")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -33155,14 +33253,14 @@ and speed.") (define-public rust-rocket-http-0.4 (package (name "rust-rocket-http") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (crate-uri "rocket_http" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0msjjclqcgh8kpa54b4kv6zbybambc9kmkfm1q5adiq3fbg8gl59")))) + (base32 "0ga98nbcga8amg4xhrfkn1wljnqx9h0vv7mnay9g66vsxl042dnf")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -35152,17 +35250,17 @@ sub-processes using a fork-like interface.") ("rust-tempfile" ,rust-tempfile-3) ("rust-wait-timeout" ,rust-wait-timeout-0.2)))))) -(define-public rust-rustyline-7 +(define-public rust-rustyline-8 (package (name "rust-rustyline") - (version "7.1.0") + (version "8.0.0") (source (origin (method url-fetch) (uri (crate-uri "rustyline" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1v1czmy3ir7d06xldp8bg94l97hrm15hcgdxxkq3cwbizhdk09w2")))) + (base32 "14z8hyx33ygyhm5ihcl9n2g646dawlw3ajavnbbb3vnizjbvbqdr")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -35174,19 +35272,51 @@ sub-processes using a fork-like interface.") ("rust-libc" ,rust-libc-0.2) ("rust-log" ,rust-log-0.4) ("rust-memchr" ,rust-memchr-2) - ("rust-nix" ,rust-nix-0.19) + ("rust-nix" ,rust-nix-0.20) + ("rust-radix-trie" ,rust-radix-trie-0.2) ("rust-scopeguard" ,rust-scopeguard-1) + ("rust-smallvec" ,rust-smallvec-1) ("rust-unicode-segmentation" ,rust-unicode-segmentation-1) ("rust-unicode-width" ,rust-unicode-width-0.1) ("rust-utf8parse" ,rust-utf8parse-0.2) ("rust-winapi" ,rust-winapi-0.3) - ("skim" ,skim-0.7)))) + ("skim" ,skim)))) (home-page "https://github.com/kkawakam/rustyline") (synopsis "Readline implementation in Rust") (description - "Rustyline, a readline implementation based on the linenoise package.") + "Rustyline is a readline implementation based on the linenoise package.") (license license:expat))) +(define-public rust-rustyline-7 + (package + (inherit rust-rustyline-8) + (name "rust-rustyline") + (version "7.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "rustyline" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1v1czmy3ir7d06xldp8bg94l97hrm15hcgdxxkq3cwbizhdk09w2")))) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bitflags" ,rust-bitflags-1) + ("rust-cfg-if" ,rust-cfg-if-1) + ("rust-dirs-next" ,rust-dirs-next-2) + ("rust-fs2" ,rust-fs2-0.4) + ("rust-libc" ,rust-libc-0.2) + ("rust-log" ,rust-log-0.4) + ("rust-memchr" ,rust-memchr-2) + ("rust-nix" ,rust-nix-0.19) + ("rust-scopeguard" ,rust-scopeguard-1) + ("rust-unicode-segmentation" ,rust-unicode-segmentation-1) + ("rust-unicode-width" ,rust-unicode-width-0.1) + ("rust-utf8parse" ,rust-utf8parse-0.2) + ("rust-winapi" ,rust-winapi-0.3) + ("skim" ,skim-0.7)))))) + (define-public rust-rustyline-6 (package (inherit rust-rustyline-7) @@ -35673,8 +35803,9 @@ with one of the implemented strategies.") (("rust-fs2" ,rust-fs2-0.4)))) (home-page "https://github.com/dtolnay/scratch") (synopsis "Compile-time temporary directory") - (description "This crate exposes a compile-time temporary directory sharable -by multiple crates in a build graph and erased by @code{cargo clean}.") + (description "This crate exposes a compile-time temporary directory +shareable by multiple crates in a build graph and erased by @code{cargo +clean}.") (license (list license:expat license:asl2.0)))) (define-public rust-scrypt-0.3 @@ -38890,7 +39021,7 @@ I/O programming.") (define-public rust-smallvec-1 (package (name "rust-smallvec") - (version "1.4.1") + (version "1.6.1") (source (origin (method url-fetch) @@ -38899,7 +39030,7 @@ I/O programming.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0gqgmbfj8228lc55xxg331flizzwq6hfyy6gw4j2y6hni6fwnmrp")))) + "0kk08axr0ybfbjzk65a41k84mb6sfhyajmfndaka9igkx34kf3zy")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs diff --git a/gnu/packages/cross-base.scm b/gnu/packages/cross-base.scm index c5b11b5e8a..6df36966c6 100644 --- a/gnu/packages/cross-base.scm +++ b/gnu/packages/cross-base.scm @@ -153,7 +153,7 @@ base compiler and using LIBC (which may be either a libc package or #f.)" "--disable-decimal-float" ;would need libc "--disable-libcilkrts" - ,@(if (equal? "powerpc64le-linux-gnu" target) + ,@(if (string-prefix? "powerpc64le-" target) ;; On POWER9 (little endian) glibc needs ;; the 128-bit long double type. '("--with-long-double-128") diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm index 9316af8d97..fd0663ea3f 100644 --- a/gnu/packages/crypto.scm +++ b/gnu/packages/crypto.scm @@ -773,15 +773,18 @@ data on your platform, so the seed itself will be as random as possible. (define-public crypto++ (package (name "crypto++") - (version "8.4.0") + (version "8.5.0") (source (origin - (method url-fetch/zipbomb) - (uri (string-append "https://cryptopp.com/cryptopp" - (string-join (string-split version #\.) "") - ".zip")) + (method git-fetch) + (uri + (git-reference + (url "https://github.com/weidai11/cryptopp") + (commit + (string-append "CRYPTOPP_" + (string-replace-substring version "." "_"))))) (sha256 (base32 - "16kvfm11xv7j9a3yykzysjgw38a9b7lnc5n5x5h82g395k6ybxf0")))) + "0in7rlazq91vfi519g9wr7bh87hii47cimxv7fmj0f88vhjaidq3")))) (build-system gnu-build-system) (arguments `(#:make-flags diff --git a/gnu/packages/cryptsetup.scm b/gnu/packages/cryptsetup.scm index a12ac93b25..1b3da5389c 100644 --- a/gnu/packages/cryptsetup.scm +++ b/gnu/packages/cryptsetup.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2019–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -35,7 +35,7 @@ (define-public cryptsetup (package (name "cryptsetup") - (version "2.3.4") + (version "2.3.5") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/linux/utils/cryptsetup/v" @@ -43,7 +43,7 @@ "/cryptsetup-" version ".tar.xz")) (sha256 (base32 - "0wrpz2fzbsszmsgxxbssxjgylpyiindh24z8g13m2fxmjsxyw5lx")))) + "1hbhzlv4vbib1da20vnrqaikhxi7ljnchbzrv8v2a4sd8ipr9nff")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm index b723e3ab67..236b45d90e 100644 --- a/gnu/packages/cups.scm +++ b/gnu/packages/cups.scm @@ -744,14 +744,15 @@ printer/driver specific, but spooler-independent PPD file.") (define-public foo2zjs (package (name "foo2zjs") - (version "20200610") - (source (origin - (method url-fetch) - ;; XXX: This is an unversioned URL! - (uri "http://foo2zjs.rkkda.com/foo2zjs.tar.gz") - (sha256 - (base32 - "11ddx6wf8b5ksl4fqw6fnyz9m3y470lryyrskkya2bsch2bvj9lg")))) + (version "20200610.1") + (source + (origin + (method url-fetch) + ;; The upstream tarball is unversioned: use a stable snapshot. + (uri (string-append "https://web.archive.org/web/20210224094943if_/" + "http://foo2zjs.rkkda.com/foo2zjs.tar.gz")) + (sha256 + (base32 "03ncif50n7ck7drggqxbc7w0kgzdb90ha0dbvqk98ky8lw3k76xd")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/curl.scm b/gnu/packages/curl.scm index 17bee2e4ab..3e8ad938b2 100644 --- a/gnu/packages/curl.scm +++ b/gnu/packages/curl.scm @@ -62,6 +62,7 @@ (base32 "1j2g04m6als6hmqzvddv84c31m0x90bfgyz3bjrwdkarbkby40k3")) (patches (search-patches "curl-use-ssl-cert-env.patch")))) + (replacement curl/fixed) (build-system gnu-build-system) (outputs '("out" "doc")) ;1.2 MiB of man3 pages @@ -145,6 +146,20 @@ tunneling, and so on.") (define-public curl-minimal (deprecated-package "curl-minimal" curl)) +(define-public curl/fixed + (package + (inherit curl) + (version "7.76.0") + (source + (origin + (inherit (package-source curl)) + (uri (string-append "https://curl.haxx.se/download/curl-" + version ".tar.xz")) + (patches (search-patches "curl-7.76-use-ssl-cert-env.patch")) + (sha256 + (base32 + "1j2g04m6als6hmqzvddv84c31m0x90bfgyz3bjrwdkarbkby40k3")))))) + (define-public kurly (package (name "kurly") diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index f7b03e96ab..3c865b05c1 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -48,6 +48,7 @@ ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2021 Greg Hogan <code@greghogan.com> +;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -734,6 +735,7 @@ Language.") (append (find-files "extra/wolfssl") (find-files "zlib"))) #t)))) + (replacement mariadb/fixed) (build-system cmake-build-system) (outputs '("out" "lib" "dev")) (arguments @@ -969,6 +971,13 @@ Language.") as a drop-in replacement of MySQL.") (license license:gpl2))) +(define mariadb/fixed + (package + (inherit mariadb) + (source (origin + (inherit (package-source mariadb)) + (patches (search-patches "mariadb-CVE-2021-27928.patch")))))) + (define-public mariadb-connector-c (package (name "mariadb-connector-c") @@ -994,6 +1003,31 @@ as a drop-in replacement of MySQL.") developed in C/C++ to MariaDB and MySQL databases.") (license license:lgpl2.1+))) +(define-public galera + (package + (name "galera") + (version "26.4.7") + (source (origin + (method git-fetch) + (uri (git-reference + (commit "bac8171266cb982fe013ce496d78085438c6f23e") + (url "https://github.com/codership/galera") + (recursive? #t))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0h7s670pcasq8wzprhyxqfca2cghi62b8xz2kikb2a86wd453qil")))) + (build-system cmake-build-system) + (inputs + `(("check" ,check) + ("boost" ,boost) + ("openssl" ,openssl))) + (home-page "https://github.com/codership/galera/") + (synopsis "Extension to the MariaDB database server") + (description + "Galera is a wsrep-provider that is used with MariaDB for load-balancing +and high-availability (HA).") + (license license:gpl2))) ;'COPYING' says "version 2" only + ;; Don't forget to update the other postgresql packages when upgrading this one. (define-public postgresql-13 (package @@ -2467,7 +2501,10 @@ can autogenerate peewee models using @code{pwiz}, a model generator.") (lambda _ (substitute* "setup.py" (("pypika>=0\\.44\\.0,<0\\.45\\.0") "pypika") - (("aiosqlite>=0.16.0,<0.17.0") "aiosqlite")) + (("aiosqlite>=0.16.0,<0.17.0") "aiosqlite") + (("pytz>=2020\\.4,<2021\\.0") "pytz") + ;; Not required, since ciso8601 is used. + (("'iso8601>=0\\.1\\.13,<0\\.2\\.0',") "")) #t))))) (native-inputs `(("python-asynctest" ,python-asynctest) @@ -2476,6 +2513,7 @@ can autogenerate peewee models using @code{pwiz}, a model generator.") `(("python-aiosqlite" ,python-aiosqlite) ("python-pypika" ,python-pypika) ("python-ciso8601" ,python-ciso8601) + ("python-pytz" ,python-pytz) ("python-typing-extensions" ,python-typing-extensions))) (home-page @@ -3776,7 +3814,8 @@ The drivers officially supported by @code{libdbi} are: (base32 "14x2gjblkgpflv75wl144cyjp1sis5rbxnr9r2gj3yw16v2av0bp")))) (build-system cmake-build-system) - (inputs + (propagated-inputs + ;; Headers of soci has include-references to headers of these inputs. `(("firebird" ,firebird) ("postgresql" ,postgresql) ("sqlite" ,sqlite) @@ -3799,14 +3838,14 @@ PostreSQL, SQLite, ODBC and MySQL.") (define-public freetds (package (name "freetds") - (version "1.2.18") + (version "1.2.19") (source (origin (method url-fetch) (uri (string-append "https://www.freetds.org/files/stable/" "freetds-" version ".tar.gz")) (sha256 - (base32 "1hspvwxwdd1apadsy2b40dpjik8kfwcvdamvhpg3lnm15n02fb50")))) + (base32 "11xf2w8gh2p9cq4i38jfvdiwgig8wqbg098xjc08kx4iii8lxy3m")))) (build-system gnu-build-system) (arguments ;; NOTE: (Sharlatan-20210110213908+0000) some tests require DB connection, diff --git a/gnu/packages/debian.scm b/gnu/packages/debian.scm index 221f23e42b..26b7f5194e 100644 --- a/gnu/packages/debian.scm +++ b/gnu/packages/debian.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2018, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2018, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Marius Bakke <marius@gnu.org> ;;; @@ -41,7 +41,7 @@ (define-public debian-archive-keyring (package (name "debian-archive-keyring") - (version "2019.1") + (version "2021.1.1") (source (origin (method git-fetch) @@ -51,7 +51,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "0bphwji3ywk1zi5bq8bhqk7l51fwjy1idwsw7zfqnxca8m5wvw1g")))) + "0dcmv7y1k6j3a646kr0rkd2a0c4j2wrz868bh8j9zjx1npzns73q")))) (build-system gnu-build-system) (arguments '(#:test-target "verify-results" @@ -84,7 +84,7 @@ contains the archive keys used for that.") (define-public ubuntu-keyring (package (name "ubuntu-keyring") - (version "2018.09.18.1") + (version "2021.03.26") (source (origin (method url-fetch) @@ -92,7 +92,7 @@ contains the archive keys used for that.") "+files/" name "_" version ".tar.gz")) (sha256 (base32 - "0csx2n62rj9rxjv4y8qhby7l9rbybfwrb0406pc2cjr7f2yk91af")))) + "1ccvwh4s51viyhcg8gh189jmvbrhc5wv1bbp4minz3200rffsbj9")))) (build-system trivial-build-system) (arguments `(#:modules ((guix build utils)) @@ -284,7 +284,7 @@ other apt sources typically provided by open source developers.") (define-public dpkg (package (name "dpkg") - (version "1.20.7.1") + (version "1.20.9") (source (origin (method git-fetch) @@ -294,7 +294,7 @@ other apt sources typically provided by open source developers.") (file-name (git-file-name name version)) (sha256 (base32 - "0d1cppigwhpv0z1ac94gjalkzs3n0gjyi383pkhz1h9d4fvmadk9")))) + "16wlb8hwbdvxar187bjd4pzdzj95g3l2ryi2khqqmwbyca4sjm1n")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/debug.scm b/gnu/packages/debug.scm index 2913c348f3..9a4ce7067a 100644 --- a/gnu/packages/debug.scm +++ b/gnu/packages/debug.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014, 2015, 2016, 2017, 2019, 2020 Eric Bavier <bavier@posteo.net> -;;; Copyright © 2016, 2017, 2018, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2019 Pkill -9 <pkill9@runbox.com> @@ -179,12 +179,13 @@ tools that process C/C++ code.") ("aarch64-linux" "aarch64") ("armhf-linux" "arm") ("mips64el-linux" "mips64el") + ("powerpc-linux" "ppc") ;; Prevent errors when querying this package on unsupported ;; platforms, e.g. when running "guix package --search=" (_ "UNSUPPORTED")))) (package (name "american-fuzzy-lop") - (version "2.56b") ;It seems all releases have the 'b' suffix + (version "2.57b") ;It seems all releases have the 'b' suffix (source (origin (method git-fetch) @@ -192,7 +193,7 @@ tools that process C/C++ code.") (url "https://github.com/google/AFL") (commit (string-append "v" version)))) (sha256 - (base32 "1q1g59gkm48aa4cg9h70jx4i2gapmypgp5rzs156b2avd95vwkn1")) + (base32 "0ks0s8iizp7mpc9mlpv126rsny0dkljfsw68689g9jiisjz2z530")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (inputs @@ -254,6 +255,7 @@ down the road.") ("aarch64-linux" "aarch64") ("armhf-linux" "arm") ("mips64el-linux" "mips64el") + ("powerpc-linux" "ppc") ;; Prevent errors when querying this package on unsupported ;; platforms, e.g. when running "guix package --search=" (_ "UNSUPPORTED")))) @@ -269,7 +271,8 @@ down the road.") (base32 "17w21spvaxaidi2am5lpsln8yjpyp2zi3s3gc6nsxj5arlgamzgw")) (patches - (search-patches "qemu-glibc-2.27.patch")))) + (search-patches "qemu-glibc-2.27.patch" + "qemu-glibc-2.30.patch")))) (build-system gnu-build-system) (arguments `(;; Running tests in parallel can occasionally lead to failures, like: diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm index 20ba92709a..d5f782e68d 100644 --- a/gnu/packages/diffoscope.scm +++ b/gnu/packages/diffoscope.scm @@ -72,7 +72,7 @@ (define-public diffoscope (package (name "diffoscope") - (version "170") + (version "172") (source (origin (method git-fetch) (uri (git-reference @@ -81,7 +81,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "0s1z4yc5d10ns4x28d2lm8py30r7sq4764q6b8yxcwxwfrjibmb0")))) + "1lglxn9h8s7kvmfd2rsyhrcv3y8a4bppbxr9nf2sgnlbdln1vwqq")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm index ed112f2ec2..bf0897b083 100644 --- a/gnu/packages/disk.scm +++ b/gnu/packages/disk.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2015 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2016, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com> @@ -302,17 +302,69 @@ fdisk. fdisk is used for the creation and manipulation of disk partition tables, and it understands a variety of different formats.") (license license:gpl3+))) +(define-public gpart + ;; The latest (0.3) release is from 2015 and is missing a crash fix. + (let ((commit "ec03350a01ad69708b5a3e2d47b8e002b0eba6c9") + (revision "0")) + (package + (name "gpart") + (version (git-version "0.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/baruch/gpart") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1dassswliaiwhhmx7yz540yyxgk53fvg672dbvgc5q0v6cqrh5jx")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list (string-append "--docdir=" (assoc-ref %outputs "out") "/share/doc/" + ,name "-" ,version)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-premature-configuration + (lambda _ + (substitute* "autogen.sh" + (("\\./configure") ""))))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake))) + (home-page "https://github.com/baruch/gpart") + (synopsis "Guess and recover PC-style partition tables") + (description + "Gpart tries to guess the partitions on a PC-style, MBR-partitioned disk +after they have been inadvertently deleted or the primary partition table at +sector 0 damaged. In both cases, the contents of these partitions still exist +on the disk but the operating system cannot access them. + +Gpart ignores the partition table and scans each sector of the device or image +file for several known file system and partition types. Only partitions which +have been formatted in some way can be recognized. Several file system guessing +modules are built in; more can be written and loaded at run time. + +The guessed table can be restored manually, for example with @command{fdisk}, +written to a file, or---if you firmly believe it's entirely correct---directly +to disk. + +It should be stressed that gpart does a very heuristic job. It can easily be +right in its guesswork but it can also be terribly wrong. Never believe its +output without any plausibility checks.") + (license license:gpl2+)))) + (define-public gptfdisk (package (name "gptfdisk") - (version "1.0.6") + (version "1.0.7") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gptfdisk/gptfdisk/" version "/gptfdisk-" version ".tar.gz")) (sha256 - (base32 "1a4c2ss6n2s6x8v11h79jykh96y46apd6i838ka0ngx58gb53ifx")))) + (base32 "1h1871gwlq05gdc2wym98ghfmq6pn5lh8g5cqy3r49svz2vh8h3m")))) (build-system gnu-build-system) (inputs `(("gettext" ,gettext-minimal) @@ -363,6 +415,8 @@ scheme.") (sha256 (base32 "0qqh38izl5ppap9a5izf3hijh94k65s3zbfkczd4b7x04syqwlyf")))) (build-system gnu-build-system) + (arguments + `(#:configure-flags (list (string-append "CXX=" ,(cxx-for-target))))) (home-page "https://www.gnu.org/software/ddrescue/ddrescue.html") (synopsis "Data recovery utility") (native-inputs `(("lzip" ,lzip))) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index 0006f25207..2817160d7b 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -48,13 +48,13 @@ (define-public python-django (package (name "python-django") - (version "3.1.7") + (version "3.1.8") (source (origin (method url-fetch) (uri (pypi-uri "Django" version)) (sha256 (base32 - "19v5lfijnjx18y9ax962z3gnbxy9k8i3w4j0qfzcp85nx4p7kkij")))) + "1b0ymqv09b523k3c2jnpb2gjy2fsy6irbfyc2g9x5hjyw41k2fgq")))) (build-system python-build-system) (arguments '(#:phases @@ -120,13 +120,13 @@ to the @dfn{don't repeat yourself} (DRY) principle.") (define-public python-django-2.2 (package (inherit python-django) - (version "2.2.19") + (version "2.2.20") (source (origin (method url-fetch) (uri (pypi-uri "Django" version)) (sha256 (base32 - "0hysjf8bz4g8xrn2cdx6pmawimpyr6ag2fg3jxsnc1byr3g3bhih")))) + "0r3a6gbhwngxl172yy6n0sq5knibl2vxc0wbk1g8licfbzfgjs95")))) (native-inputs `(;; XXX: In 2.2 and 3.0, selenium is required for the test suite. ("python-selenium" ,python-selenium) diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm index 16e2ec4f41..3cf88febae 100644 --- a/gnu/packages/dns.scm +++ b/gnu/packages/dns.scm @@ -18,6 +18,7 @@ ;;; Copyright © 2020 Leo Famulari <leo@famulari.name> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2020 Simon South <simon@simonsouth.net> +;;; Copyright © 2021 Zheng Junjie <873216071@qq.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -277,7 +278,7 @@ prompt the user with the option to go with insecure DNS only.") (define-public dnsmasq (package (name "dnsmasq") - (version "2.84") + (version "2.85") (source (origin (method url-fetch) (uri (string-append @@ -285,7 +286,7 @@ prompt the user with the option to go with insecure DNS only.") version ".tar.xz")) (sha256 (base32 - "0305a0c3snwqcv77sipyynr55xip1fp2843yn04pc4vk9g39acb0")))) + "1yhjwgz8g5qrqvxh6bbmg3443zi8qqjks3q872wyb1zn7n0d765d")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -538,14 +539,14 @@ asynchronous fashion.") (define-public nsd (package (name "nsd") - (version "4.3.5") + (version "4.3.6") (source (origin (method url-fetch) (uri (string-append "https://www.nlnetlabs.nl/downloads/nsd/nsd-" version ".tar.gz")) (sha256 - (base32 "0wj490rxqs86z8s4lxjwk06ry5pvkdqqyq1cf83z7mxk60zb98kx")))) + (base32 "062zwx4k5rgpg2c0b4721ldj36aj8clrxv79mlfw9b15ap7w1rmy")))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -812,7 +813,7 @@ Extensions} (DNSSEC).") (define-public knot (package (name "knot") - (version "3.0.4") + (version "3.0.5") (source (origin (method git-fetch) @@ -821,7 +822,7 @@ Extensions} (DNSSEC).") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1mbjl18zi8yxs7pa3395lqjwdw0agjbfpl32x42i6d9zb8fsblzs")) + (base32 "16rgcmgj21w2niyz45d3zjlci9i22gxcvfzqw7g5zwsjdy9610nx")) (modules '((guix build utils))) (snippet '(begin @@ -942,14 +943,14 @@ synthesis, and on-the-fly re-configuration.") (define-public knot-resolver (package (name "knot-resolver") - (version "5.3.0") + (version "5.3.1") (source (origin (method url-fetch) (uri (string-append "https://secure.nic.cz/files/knot-resolver/" "knot-resolver-" version ".tar.xz")) (sha256 (base32 - "0gp3ivv3zccz4b6s1wxbsvvlrc837lw2g089l3cbvzsg7z0b4v7v")))) + "1j99sz6r1hdvvd8rffx1917r9cyb7z46ivp5934sq57irmxnnkcx")))) (build-system meson-build-system) (outputs '("out" "doc")) (arguments @@ -1109,20 +1110,17 @@ attempts the update when it has changed.") (license license:gpl2+))) (define-public hnsd - ;; There have been no releases yet, hence this commit. - (let ((revision "0") - (commit "895d89c25d316d18df9d374fe78aae3902bc89fb")) (package (name "hnsd") - (version (git-version "0.0" revision commit)) + (version "1.0.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/handshake-org/hnsd") - (commit commit))) + (commit (string-append "v" version)))) (sha256 (base32 - "0704y73sddn24jga9csw4gxyfb3pnrfnk0vdcph84n1h38490l16")) + "1kdgff8rf8gmvwz2p758ilbjxpvz4xm6z41pa5353asg6xb853bb")) (file-name (git-file-name name version)) (modules '((guix build utils))) (snippet @@ -1159,7 +1157,7 @@ attempts the update when it has changed.") (description "@command{hnsd} is a @dfn{host name resolver} for the Handshake Naming System (HNS) peer-to-peer network.") - (license license:expat)))) + (license license:expat))) (define-public libmicrodns (package diff --git a/gnu/packages/docbook.scm b/gnu/packages/docbook.scm index acc17f0c80..3fd1930c79 100644 --- a/gnu/packages/docbook.scm +++ b/gnu/packages/docbook.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Marius Bakke <marius@gnu.org> ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2021 Mark H Weaver <mhw@netris.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -35,6 +36,7 @@ #:use-module (guix licenses) #:use-module (guix packages) #:use-module (guix download) + #:use-module ((guix build utils) #:select (alist-replace)) #:use-module (guix build-system gnu) #:use-module (guix build-system trivial) #:use-module (guix build-system python)) @@ -469,6 +471,17 @@ DB2LaTeX.") ;; lib/contrib/which is under an X11 license (license gpl2+))) +;; This is a variant of the 'dblatex' package that is not updated often. It +;; is intended to be used as a native-input at build-time only, e.g. by +;; 'gtk-doc' for generating package documentation. This allows the main +;; 'dblatex' and 'imagemagick' packages to be freely updated on the 'master' +;; branch without triggering an excessive number of rebuilds. +(define-public dblatex/stable + (hidden-package + (package/inherit dblatex + (inputs (alist-replace "imagemagick" `(,imagemagick/stable) + (package-inputs dblatex)))))) + (define-public docbook-utils (package (name "docbook-utils") diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm index 5c6292c122..6083ed780b 100644 --- a/gnu/packages/docker.scm +++ b/gnu/packages/docker.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2016 David Thompson <davet@gnu.org> ;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Katherine Cox-Buday <cox.katherine.e@gmail.com> ;;; Copyright © 2020 Jesse Dowell <jessedowell@gmail.com> @@ -177,7 +177,7 @@ Python without keeping their credentials in a Docker configuration file.") (define-public containerd (package (name "containerd") - (version "1.3.10") + (version "1.4.4") (source (origin (method git-fetch) @@ -186,49 +186,55 @@ Python without keeping their credentials in a Docker configuration file.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "10fz7359aydbz0yb01qkrsq2diypayfal618lvvb1x0gvgkp526i")))) + (base32 "0qjbfj1dw6pykxhh8zahcxlgpyjzgnrngk5vjaf34akwyan8nrxb")))) (build-system go-build-system) (arguments - `(#:import-path "github.com/containerd/containerd" - #:phases - (modify-phases %standard-phases - (add-after 'chdir 'patch-paths - (lambda* (#:key inputs import-path outputs #:allow-other-keys) - ;; TODO: Patch "socat", "unpigz". - (with-directory-excursion (string-append "src/" import-path) - (substitute* "./runtime/v1/linux/runtime.go" - (("defaultRuntime[ \t]*=.*") - (string-append "defaultRuntime = \"" - (assoc-ref inputs "runc") - "/sbin/runc\"\n")) - (("defaultShim[ \t]*=.*") - (string-append "defaultShim = \"" - (assoc-ref outputs "out") - "/bin/containerd-shim\"\n"))) - (substitute* "./vendor/github.com/containerd/go-runc/runc.go" - (("DefaultCommand[ \t]*=.*") - (string-append "DefaultCommand = \"" - (assoc-ref inputs "runc") - "/sbin/runc\"\n"))) - (substitute* "vendor/github.com/containerd/continuity/testutil/loopback/loopback_linux.go" - (("exec\\.Command\\(\"losetup\"") ; ) - (string-append "exec.Command(\"" - (assoc-ref inputs "util-linux") - "/sbin/losetup\""))) ;) - #t))) - (replace 'build - (lambda* (#:key import-path (make-flags '()) #:allow-other-keys) - (with-directory-excursion (string-append "src/" import-path) - (apply invoke "make" make-flags)))) - (replace 'install - (lambda* (#:key import-path outputs (make-flags '()) #:allow-other-keys) - (with-directory-excursion (string-append "src/" import-path) - (let* ((out (assoc-ref outputs "out"))) - (apply invoke "make" (string-append "DESTDIR=" out) "install" - make-flags)))))))) + (let ((make-flags (list (string-append "VERSION=" version) + "REVISION=0"))) + `(#:import-path "github.com/containerd/containerd" + #:phases + (modify-phases %standard-phases + (add-after 'chdir 'patch-paths + (lambda* (#:key inputs import-path outputs #:allow-other-keys) + (with-directory-excursion (string-append "src/" import-path) + (substitute* "runtime/v1/linux/runtime.go" + (("defaultRuntime[ \t]*=.*") + (string-append "defaultRuntime = \"" + (assoc-ref inputs "runc") + "/sbin/runc\"\n")) + (("defaultShim[ \t]*=.*") + (string-append "defaultShim = \"" + (assoc-ref outputs "out") + "/bin/containerd-shim\"\n"))) + (substitute* "vendor/github.com/containerd/go-runc/runc.go" + (("DefaultCommand[ \t]*=.*") + (string-append "DefaultCommand = \"" + (assoc-ref inputs "runc") + "/sbin/runc\"\n"))) + (substitute* "vendor/github.com/containerd/continuity/testutil\ +/loopback/loopback_linux.go" + (("exec\\.Command\\(\"losetup\"") + (string-append "exec.Command(\"" + (assoc-ref inputs "util-linux") + "/sbin/losetup\""))) + (substitute* "archive/compression/compression.go" + (("exec\\.LookPath\\(\"unpigz\"\\)") + (string-append "\"" (assoc-ref inputs "pigz") + "/bin/unpigz\", error(nil)")))))) + (replace 'build + (lambda* (#:key import-path #:allow-other-keys) + (with-directory-excursion (string-append "src/" import-path) + (apply invoke "make" ',make-flags)))) + (replace 'install + (lambda* (#:key import-path outputs #:allow-other-keys) + (with-directory-excursion (string-append "src/" import-path) + (let* ((out (assoc-ref outputs "out"))) + (apply invoke "make" (string-append "DESTDIR=" out) "install" + ',make-flags))))))))) (inputs `(("btrfs-progs" ,btrfs-progs) ("libseccomp" ,libseccomp) + ("pigz" ,pigz) ("runc" ,runc) ("util-linux" ,util-linux))) (native-inputs diff --git a/gnu/packages/ebook.scm b/gnu/packages/ebook.scm index a68d24760b..4731c0fa80 100644 --- a/gnu/packages/ebook.scm +++ b/gnu/packages/ebook.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2015, 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Alex Griffin <a@ajgrf.com> -;;; Copyright © 2017, 2019, 2020 Brendan Tildesley <mail@brendan.scot> +;;; Copyright © 2017, 2019, 2020, 2021 Brendan Tildesley <mail@brendan.scot> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> @@ -58,10 +58,14 @@ #:use-module (gnu packages pdf) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) + #:use-module (gnu packages python-compression) + #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) #:use-module (gnu packages serialization) + #:use-module (gnu packages speech) #:use-module (gnu packages sqlite) #:use-module (gnu packages time) #:use-module (gnu packages tls) @@ -88,10 +92,30 @@ (description "CHMLIB is a library for dealing with ITSS/CHM format files.") (license license:lgpl2.1+))) +(define-public python-pychm + (package + (name "python-pychm") + (version "0.8.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pychm" version)) + (sha256 + (base32 + "0wpn9ijlsmrpyiwg3drmgz4dms1i1i347adgqw37bkrh3vn6yq16")))) + (build-system python-build-system) + (inputs + `(("chmlib" ,chmlib))) + (home-page "https://github.com/dottedmag/pychm") + (synopsis "Handle CHM files") + (description "This package provides a Python module for interacting +with Microsoft Compiled HTML (CHM) files") + (license license:gpl2+))) + (define-public calibre (package (name "calibre") - (version "4.18.0") + (version "5.14.0") (source (origin (method url-fetch) @@ -100,7 +124,7 @@ version ".tar.xz")) (sha256 (base32 - "0w9pcfvskjh4v00vjw3i6hzrafy863pgsmmqdx4lffip3p856brw")) + "0w8j9r9qa56r8gm9b10dwh8zrzqlv79s2br82jqg02lrnrbwwv0q")) (modules '((guix build utils))) (snippet '(begin @@ -112,8 +136,6 @@ "")) ;; Remove unneeded resources. - (delete-file "resources/viewer.js") - (delete-file "resources/viewer.html") (delete-file "resources/mozilla-ca-certs.pem") (delete-file "resources/calibre-portable.bat") (delete-file "resources/calibre-portable.sh") @@ -125,57 +147,60 @@ (native-inputs `(("pkg-config" ,pkg-config) ("qtbase" ,qtbase) ; for qmake - ("python2-flake8" ,python2-flake8) + ("python-flake8" ,python-flake8) + ("python-pyqt-builder" ,python-pyqt-builder) ("xdg-utils" ,xdg-utils))) (inputs - `(("chmlib" ,chmlib) - ("fontconfig" ,fontconfig) + `(("fontconfig" ,fontconfig) ("font-liberation" ,font-liberation) ("glib" ,glib) ("hunspell" ,hunspell) ("hyphen" ,hyphen) ("icu4c" ,icu4c) - ("js-mathjax" ,js-mathjax) ("libmtp" ,libmtp) ("libpng" ,libpng) + ("libjpeg" ,libjpeg-turbo) + ("libjxr" ,libjxr) ("libusb" ,libusb) ("openssl" ,openssl) ("optipng" ,optipng) ("podofo" ,podofo) ("poppler" ,poppler) - ("python" ,python-2) - ("python2-apsw" ,python2-apsw) - ("python2-beautifulsoup4" ,python2-beautifulsoup4) - ("python2-chardet" ,python2-chardet) - ("python2-cssselect" ,python2-cssselect) - ("python2-css-parser" ,python2-css-parser) - ("python2-dateutil" ,python2-dateutil) - ("python2-dbus" ,python2-dbus) - ("python2-dnspython" ,python2-dnspython-1.16) - ("python2-dukpy" ,python2-dukpy) - ("python2-feedparser" ,python2-feedparser) - ("python2-html2text" ,python2-html2text) - ("python2-html5-parser" ,python2-html5-parser) - ("python2-html5lib" ,python2-html5lib) - ("python2-lxml" ,python2-lxml) - ("python2-markdown" ,python2-markdown) - ("python2-mechanize" ,python2-mechanize) - ;; python2-msgpack is needed for the network content server to work. - ("python2-msgpack" ,python2-msgpack) - ("python2-netifaces" ,python2-netifaces) - ("python2-odfpy" ,python2-odfpy) - ("python2-pillow" ,python2-pillow) - ("python2-psutil" ,python2-psutil) - ("python2-pygments" ,python2-pygments) - ("python2-pyqtwebengine" ,python2-pyqtwebengine) - ("python2-pyqt" ,python2-pyqt) - ("python2-sip" ,python2-sip) - ("python2-regex" ,python2-regex) + ("python-apsw" ,python-apsw) + ("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-cchardet" ,python-cchardet) + ("python-css-parser" ,python-css-parser) + ("python-cssselect" ,python-cssselect) + ("python-dateutil" ,python-dateutil) + ("python-dbus" ,python-dbus) + ("python-dnspython" ,python-dnspython-1.16) + ("python-dukpy" ,python-dukpy) + ("python-feedparser" ,python-feedparser) + ("python-html2text" ,python-html2text) + ("python-html5-parser" ,python-html5-parser) + ("python-html5lib" ,python-html5lib) + ("python-lxml" ,python-lxml) + ("python-markdown" ,python-markdown) + ("python-mechanize" ,python-mechanize) + ;; python-msgpack is needed for the network content server to work. + ("python-msgpack" ,python-msgpack) + ("python-netifaces" ,python-netifaces) + ("python-odfpy" ,python-odfpy) + ("python-pillow" ,python-pillow) + ("python-psutil" ,python-psutil) + ("python-py7zr" ,python-py7zr) + ("python-pychm" ,python-pychm) + ("python-pycryptodome" ,python-pycryptodome) + ("python-pygments" ,python-pygments) + ("python-pyqt" ,python-pyqt) + ("python-pyqtwebengine" ,python-pyqtwebengine) + ("python-regex" ,python-regex) + ("python-speechd" ,speech-dispatcher) + ("python-zeroconf" ,python-zeroconf) ("qtwebengine" ,qtwebengine) ("sqlite" ,sqlite))) (arguments - `(#:python ,python-2 - ;; Calibre is using setuptools by itself, but the setup.py is not + `(;; Calibre is using setuptools by itself, but the setup.py is not ;; compatible with the shim wrapper (taken from pip) we are using. #:use-setuptools? #f #:phases @@ -207,18 +232,27 @@ (add-before 'build 'configure (lambda* (#:key inputs outputs #:allow-other-keys) (let ((podofo (assoc-ref inputs "podofo")) - (pyqt (assoc-ref inputs "python2-pyqt")) - (python-sip (assoc-ref inputs "python2-sip")) + (pyqt (assoc-ref inputs "python-pyqt")) + (python-sip (assoc-ref inputs "python-sip")) (out (assoc-ref outputs "out"))) - (substitute* "setup/build_environment.py" - (("= get_sip_dir\\(\\)") - (string-append "= '" pyqt "/share/sip'"))) - + (substitute* "setup/build.py" + (("\\[tool.sip.bindings.pictureflow\\]") + "[tool.sip.bindings.pictureflow] +tags = [\"WS_X11\"]") + (("\\[tool.sip.project\\]") + (string-append "[tool.sip.project] +sip-include-dirs = [\"" pyqt "/share/sip" "\"]"))) (substitute* "src/calibre/ebooks/pdf/pdftohtml.py" (("PDFTOHTML = 'pdftohtml'") (string-append "PDFTOHTML = \"" (assoc-ref inputs "poppler") "/bin/pdftohtml\""))) - + ;; get_exe_path looks in poppler's output for these binaries. Make + ;; it not do that. + (substitute* "src/calibre/utils/img.py" + (("get_exe_path..jpegtran..") (string-append "'" (which "jpegtran") "'")) + (("get_exe_path..cjpeg..") (string-append "'" (which "cjpeg") "'")) + (("get_exe_path..optipng..") (string-append "'" (which "optipng") "'")) + (("get_exe_path..JxrDecApp..") (string-append "'" (which "JxrDecApp") "'"))) ;; Calibre thinks we are installing desktop files into a home ;; directory, but here we butcher the script in to installing ;; to calibres /share directory. @@ -237,7 +271,6 @@ "/share/fonts") "/tmp/.fonts") - (setenv "SIP_BIN" (string-append python-sip "/bin/sip")) (setenv "PODOFO_INC_DIR" (string-append podofo "/include/podofo")) (setenv "PODOFO_LIB_DIR" (string-append podofo "/lib")) ;; This informs the tests we are a continuous integration @@ -248,13 +281,11 @@ ;; fix it, so I'm not sure how to fix it. TODO: Fix test and remove this. (setenv "SKIP_QT_BUILD_TEST" "true") #t))) - (add-after 'build 'build-extra + (add-after 'install 'install-rapydscript (lambda* (#:key inputs #:allow-other-keys) - (invoke "python2" "setup.py" "mathjax""--system-mathjax" - "--path-to-mathjax" (string-append - (assoc-ref inputs "js-mathjax") - "/share/javascript/mathjax")) - (invoke "python2" "setup.py" "rapydscript") + ;; Unset so QtWebengine doesn't dump temporary files here. + (unsetenv "XDG_DATA_HOME") + (invoke "python" "setup.py" "rapydscript") #t)) (add-after 'install 'install-man-pages (lambda* (#:key outputs #:allow-other-keys) diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm index c61fdd32a6..2118ebbf6e 100644 --- a/gnu/packages/education.scm +++ b/gnu/packages/education.scm @@ -689,17 +689,6 @@ language and very flexible regarding to new or unknown keyboard layouts.") (sha256 (base32 "10lm2p8w26c9n6lhvw3301myfss0dq7hl7rawzb3hsy1lqvmvdib")))) (build-system qt-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'configure 'patch-makefiles - (lambda* (#:key inputs #:allow-other-keys) - (let ((qtdec (assoc-ref inputs "qtdeclarative"))) - (substitute* '("src/CMakeFiles/ktouch_autogen.dir/build.make" - "src/CMakeFiles/ktouch.dir/build.make") - (("/gnu/store/.*qmlcachegen") - (string-append qtdec "/bin/qmlcachegen")))) - #t))))) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) ("kdoctools" ,kdoctools) diff --git a/gnu/packages/efi.scm b/gnu/packages/efi.scm index 11cfe586ac..8bbd873435 100644 --- a/gnu/packages/efi.scm +++ b/gnu/packages/efi.scm @@ -38,14 +38,14 @@ (define-public gnu-efi (package (name "gnu-efi") - (version "3.0.12") + (version "3.0.13") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gnu-efi/" "gnu-efi-" version ".tar.bz2")) (sha256 - (base32 "0sbn6am3k5lqafycggh1g964fcwjwnh0i9hhwrk4ncrwzphz55h1")))) + (base32 "0z9v5pl5pmlw8pjpd66iyh9pml2hh6pqd4c5qilywilw4wazgk1g")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; none exist diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 29958f7316..c8b31d7456 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -85,7 +85,7 @@ ;;; Copyright © 2020 Adam Kandur <rndd@tuta.io> ;;; Copyright © 2020 Tim Howes <timhowes@lavabit.com> ;;; Copyright © 2020 Noah Landis <noahlandis@posteo.net> -;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz> +;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz> ;;; Copyright © 2020 André A. Gomes <andremegafone@gmail.com> ;;; Copyright © 2020 Jonathan Rostran <rostranjj@gmail.com> ;;; Copyright © 2020, 2021 Noah Evans <noah@nevans.me> @@ -95,6 +95,8 @@ ;;; Copyright © 2021 Alexey Abramov <levenson@mmer.org> ;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at> +;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> +;;; Copyright © 2021 Eugene Klimov <lipklim@mailbox.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -139,6 +141,7 @@ #:use-module (gnu packages djvu) #:use-module (gnu packages ebook) #:use-module (gnu packages emacs) + #:use-module (gnu packages golang) #:use-module (gnu packages guile) #:use-module (gnu packages gtk) #:use-module (gnu packages gnome) @@ -937,6 +940,29 @@ Files with the @file{.graphql} and @file{.gql} extensions are automatically opened with this mode.") (license license:gpl3+)))) +(define-public emacs-ghq + (package + (name "emacs-ghq") + (version "0.1.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rcoedo/emacs-ghq") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0rh2k93c3a0vl073a3s3a3h6gkw454v1lyd7y8l3pd24vw9hc628")))) + (build-system emacs-build-system) + (propagated-inputs + `(("ghq" ,ghq))) + (home-page "https://github.com/rcoedo/emacs-ghq") + (synopsis "Emacs interface for @code{ghq} tool") + (description + "This package provides a set of functions wrapping @code{ghq}, a tool for +organizing remote Go repository clones.") + (license license:gpl3+))) + (define-public emacs-ghub (package (name "emacs-ghub") @@ -1525,6 +1551,46 @@ reformat the current buffer using a command-line program, together with an optional minor mode which can apply this command automatically on save.") (license license:gpl3+))) +(define-public emacs-relative-buffers + (let ((release "0.0.1") + (revision "0") + (commit "9762fe268e9ff150dcec2e2e45d862d82d5c4008")) + (package + (name "emacs-relative-buffers") + (version (git-version release revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/emacsattic/relative-buffers") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0fzhwbpyndwrmxip9zlcwkrr675l5pzwcygi45hv7w1hn39w0hxp")) + (snippet + '(begin + ;; Delete the Cask test runners. + (for-each delete-file '("Cask" "test/test-helper.el")) + #t)))) + (build-system emacs-build-system) + (arguments + `(#:tests? #t + #:test-command '("ert-runner"))) + (native-inputs + `(("ert-runner" ,emacs-ert-runner))) + (propagated-inputs + `(("emacs-dash" ,emacs-dash) + ("emacs-f" ,emacs-f) + ("emacs-s" ,emacs-s))) + (home-page "https://github.com/emacsattic/relative-buffers") + (synopsis "Minor mode to rename buffers by project structure") + (description + "This package provides a minor mode for renaming buffers according to +project structure. For Python buffers, that will be the whole module name. +For temporary files and directories, that will be the relative path from the +project root.") + (license license:gpl3+)))) + (define-public emacs-relint (package (name "emacs-relint") @@ -1742,14 +1808,14 @@ incrementally confined in Isearch manner.") (define emacs-emms-print-metadata (package (name "emacs-emms-print-metadata") - (version "6.3") + (version "7.1") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "emms-" version ".tar")) (sha256 - (base32 "12cfq503li0gcqmm5bmqz8yjvfdif5xvz0l9vx3g5jl6ljygwgmf")))) + (base32 "1dng8dy0w0wsdvvnjnrllwv5a8wq3kj20jik994b7prdx5dn6y52")))) (build-system gnu-build-system) (arguments `(#:make-flags '("emms-print-metadata") @@ -2210,14 +2276,14 @@ as a library for other Emacs packages.") (define-public emacs-auctex (package (name "emacs-auctex") - (version "13.0.5") + (version "13.0.6") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "auctex-" version ".tar")) (sha256 - (base32 "072wwsqfl8n2gi2inbp0s8k1ydr6fh1zyvc3rgynwzibjjniy319")))) + (base32 "00wp388rh2nnk8fam53kilykg90jylps31qxv9ijy1lsp1hqdjys")))) (build-system emacs-build-system) ;; We use 'emacs' because AUCTeX requires dbus at compile time ;; ('emacs-minimal' does not provide dbus). @@ -2522,15 +2588,15 @@ into mode hooks and is intended to be used that way.") (define-public emacs-ggtags (package (name "emacs-ggtags") - (version "0.8.13") + (version "0.9.0") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/ggtags-" - version ".el")) + version ".tar")) (sha256 (base32 - "1qa7lcrcmf76sf6dy8sxbg4adq7rg59fm0n5848w3qxgsr0h45fg")))) + "0p79x9g94jynl83ndvqp9349vhgkzxzhnc517r8hn44iqxqf6ghg")))) (build-system emacs-build-system) (inputs `(("global" ,global))) @@ -2675,9 +2741,9 @@ using the DOT syntax, and use Graphviz to convert these files to diagrams.") (license license:gpl2+))) (define-public emacs-imenu-list - (let ((commit "46008738f8fef578a763c308cf6695e5b4d4aa77") - (revision "0") - (version "0.8")) + (let ((commit "b50222378412fbe321622a84cb2b036e084c697a") + (revision "1") + (version "0.9")) (package (name "emacs-imenu-list") (version (git-version version revision commit)) @@ -2690,7 +2756,7 @@ using the DOT syntax, and use Graphviz to convert these files to diagrams.") (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "14l3yw9y1nk103s7z5i1fmd6kvlb2p6ayi6sf9l1x1ydg9glrpl8")))) + (base32 "1936dd41fa05ndzf2bwhllvjz97iz0rflkazjipr7dvz5q072wj2")))) (build-system emacs-build-system) (home-page "https://github.com/bmag/imenu-list") (synopsis @@ -3535,7 +3601,7 @@ representation.") (define-public emacs-git-gutter (package (name "emacs-git-gutter") - (version "0.90") + (version "0.91") (source (origin (method git-fetch) @@ -3544,7 +3610,7 @@ representation.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1abagq0psip7cgsqbfjv72qy60ywsny0ibsfcn74ldj6a9v17mz5")))) + (base32 "0zc9f73app1d7j4yb10sy4xidh5252ncyxlvr5kh0kiqk88ck6j9")))) (build-system emacs-build-system) (home-page "https://github.com/syohex/emacs-git-gutter") (synopsis "See and manage hunks of text in a version control system") @@ -3587,7 +3653,7 @@ window.") (define-public emacs-git-link (package (name "emacs-git-link") - (version "0.7.5") + (version "0.8.3") (source (origin (method git-fetch) @@ -3596,7 +3662,7 @@ window.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "04xa6lp8wkjb6zs096bf4sz124grcjj15xv1h009bmn2j95rggj6")))) + (base32 "0l7xmvmj5s93hc39wjjv75f22zbhahnmcxpmvx3dfvsbig9pmk75")))) (build-system emacs-build-system) (arguments `(#:tests? #t @@ -4639,6 +4705,32 @@ Also included are keybindings for spec files and Dired buffers, as well as snippets for yasnippet.") (license license:gpl3+)))) +(define-public emacs-mode-line-idle + ;; Package has no release. Version is extracted from "Version:" keyword in + ;; main file. + (let ((commit "02b1da6278e43cc9cc0356110cc6bfbb37eb8241") + (revision "1")) + (package + (name "emacs-mode-line-idle") + (version (git-version "0.1" revision commit)) + (source + (origin + (method git-fetch) + (file-name (git-file-name name version)) + (uri (git-reference + (url "https://gitlab.com/ideasman42/emacs-mode-line-idle") + (commit commit))) + (sha256 + (base32 "0ky330b2sfbzkbxbfp9b21hdywsjw26bllspglz08hrbni7jmry8")))) + (build-system emacs-build-system) + (home-page "https://gitlab.com/ideasman42/emacs-mode-line-idle") + (synopsis "Simple delayed text evaluation for the mode-line") + (description + "Mode Line Idle provides a convenient way to defer text evaluation +which integrates into existing mode-line without requiring a minor mode or +configuration.") + (license license:gpl3+)))) + (define-public emacs-smart-mode-line (package (name "emacs-smart-mode-line") @@ -8696,6 +8788,69 @@ E-Prime forbids the use of the \"to be\" form to strengthen your writing.") programming language.") (license license:expat))) +(define-public emacs-julia-repl + (package + (name "emacs-julia-repl") + (version "1.3.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tpapp/julia-repl") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "11vpqqnxqj9nxh8kccj4y6h3f8lib6jxnsk6vxc2j2fqw6alnafm")))) + (build-system emacs-build-system) + (home-page "https://github.com/tpapp/julia-repl") + (synopsis "Minor mode for interacting with a Julia REPL") + (description "This package provides a minor mode for interacting with a +Julia REPL running inside Emacs. The julia process is started in an ANSI +terminal (term), which allows text formatting and colors, and interaction with +the help system and the debugger. It is recommended that you use this minor +mode with the package emacs-julia-mode.") + (license license:expat))) + +(define-public emacs-julia-snail + (package + (name "emacs-julia-snail") + (version "1.0.0rc4") ;rc5 requires CSTParser (julia package) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/gcv/julia-snail") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "065ix3jycsx3wvkq7a6060i93caxisdvgxgqb1l6rq15n4qln78y")))) + (build-system emacs-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'install 'JuliaSnail-jl + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "JuliaSnail.jl" + (string-append out "/share/emacs/site-lisp/"))) + #t))))) + (inputs + `(("emacs-dash" ,emacs-dash) + ("emacs-s" ,emacs-s) + ("emacs-spinner" ,emacs-spinner) + ("emacs-xref" ,emacs-xref))) + (propagated-inputs + `(("libvterm" ,libvterm) + ("emacs-julia-mode" ,emacs-julia-mode) ;required by parser + ("emacs-parsec" ,emacs-parsec) ;required by parser + ("emacs-vterm" ,emacs-vterm))) + (home-page "https://github.com/gcv/julia-snail") + (synopsis "Development environment and REPL interaction package for Julia") + (description "This package provides a development environment and REPL +interaction package for Julia in the spirit of Common Lisp’s SLIME and +Clojure’s CIDER. It enables convenient and dynamic REPL-driven development.") + (license license:gpl3))) + (define-public emacs-smex (package (name "emacs-smex") @@ -9079,6 +9234,30 @@ duplicated a lot. Org-mode makes the book keeping of tags and feeds much easier.") (license license:gpl3+)))) +(define-public emacs-elfeed-protocol + (package + (name "emacs-elfeed-protocol") + (version "0.8.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fasheng/elfeed-protocol") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "07r1qlldgd0kfikd0y737y5n42ab3nkw2s5jx7frimj41yandbdp")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-elfeed" ,emacs-elfeed))) + (home-page "https://github.com/fasheng/elfeed-protocol") + (synopsis "Fever/NewsBlur/ownCloud/tt-RSS protocols for Elfeed") + (description + "Elfeed-protocol provides extra protocols to make self-hosting RSS +readers like Fever, NewsBlur, ownCloud News and Tiny TIny RSS work +with Elfeed.") + (license license:gpl3+))) + (define-public emacs-elfeed-score (package (name "emacs-elfeed-score") @@ -10905,13 +11084,13 @@ passive voice.") (name "emacs-org") ;; emacs-org-contrib inherits from this package. Please update it as ;; well. - (version "9.4.4") + (version "9.4.5") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/org-" version ".tar")) (sha256 - (base32 "05ma8n6hr10323d85ay8ai0xrpc9q2m93n8avqh7j9fmmb3bhr0b")))) + (base32 "0h5qhrd984vf17qc227wz68191xfgbpq32dyhw0lcz2d9i0pl3xk")))) (build-system emacs-build-system) (arguments `(#:phases @@ -10932,7 +11111,7 @@ passive voice.") (doc-dir (string-append share "/doc/" ,name "-" ,version))) (install-file "org.info" info-dir) (install-file "orgguide.info" info-dir) - ;; XXX: "orgcard.pdf" is not built in Org 9.4.4. + ;; XXX: "orgcard.pdf" is not built in Org 9.4.5. ;; (install-file "orgcard.pdf" doc-dir) ) #t))))) @@ -10948,14 +11127,14 @@ programming and reproducible research.") (package (inherit emacs-org) (name "emacs-org-contrib") - (version "20201222") + (version "20210329") (source (origin (method url-fetch) (uri (string-append "https://orgmode.org/elpa/" "org-plus-contrib-" version ".tar")) (sha256 - (base32 "1pa8h5dpi5yj3j7v0aaby8sjwxvmgnbip2ilyl5pac1rlbz0jn40")) + (base32 "1l0ycz77hwmjb4sffhabb0d0hg1c9ypxbpbyv8xj5ib4nbi87f2h")) ;; ob-sclang.el is packaged separately to avoid the dependency on ;; SuperCollider and qtwebengine. (modules '((guix build utils))) @@ -12382,13 +12561,11 @@ using Imenu, and Compilation mode support for MSBuild, devenv and xbuild.") (base32 "0bs9q62bd7885c39v7x1qz3w1fhpmpdgm72xwsk2yygw0ii425nn")))) (build-system emacs-build-system) (arguments - `(#:include (cons "^lisp/" %default-include) - #:phases + `(#:phases (modify-phases %standard-phases - (add-after 'add-source-to-load-path 'add-lisp-dir-to-emacs-load-path + (add-after 'unpack 'enter-source-directory (lambda _ - (setenv "EMACSLOADPATH" - (string-append (getcwd) "/lisp:" (getenv "EMACSLOADPATH")))))))) + (chdir "lisp")))))) (propagated-inputs `(("emacs-projectile" ,emacs-projectile))) (home-page "https://github.com/ejmr/php-mode") (synopsis "Major mode for editing PHP code") @@ -12473,14 +12650,14 @@ shuangpin, wubi and cangjie.") (define-public emacs-posframe (package (name "emacs-posframe") - (version "0.8.8") + (version "1.0.0") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "posframe-" version ".tar")) (sha256 - (base32 "1ij6brzcxv9viz37qafcinlfx5l20w8x8s6786r1rsda5n1xsmvd")))) + (base32 "1k06dbh9xqn2vix5qkcapl57v0c21b344r8dx6j5qr4jxirsn2x5")))) (build-system emacs-build-system) ;; emacs-minimal does not include the function font-info. (arguments @@ -19176,7 +19353,7 @@ try completing. See @code{fish-completion-fallback-on-bash-p}.") (define-public emacs-gif-screencast (package (name "emacs-gif-screencast") - (version "1.1") + (version "1.2") (source (origin (method git-fetch) @@ -19186,7 +19363,7 @@ try completing. See @code{fish-completion-fallback-on-bash-p}.") (file-name (git-file-name name version)) (sha256 (base32 - "1g1by8lvf8c9vzm4wwsi5kp285kaj0ahsl54048ympin4pi0njw9")))) + "1yf6yipvhhna29mzaan5vb3d5qvbrkp2awr5diyf381mvxgk8akh")))) (build-system emacs-build-system) (inputs `(("scrot" ,scrot) @@ -21335,6 +21512,33 @@ DBI, and provides DB-accessing API and the simple management UI.") to open SQLite databases.") (license license:gpl3+)))) +(define-public emacs-nice-citation + (let ((commit "1013b56d9d1495a335f40a5f76203034dc5fa0ea") + (revision "0")) + (package + (name "emacs-nice-citation") + (version (git-version "0.0.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/damiencollard/nice-citation") + (commit commit))) + (sha256 + (base32 "00xqr7haca5vd0bzd043lc6x4fjb903z96frz9b8cbd7spp63z7q")) + (file-name (git-file-name name version)))) + (build-system emacs-build-system) + (home-page "https://github.com/damiencollard/nice-citation") + (synopsis "Depth-colored citations for Gnus") + (description + "This package replaces the traditional chevron citation marks @samp{>} +with a Unicode vertical bar with the same color as the text it is quoting. + +It is purely presentation: the underlying text is unchanged. In particular, +if you send a message containing a citation, it will contain the traditional +chevron marks.") + (license license:gpl3+)))) + (define-public emacs-nix-mode (package (name "emacs-nix-mode") @@ -21470,6 +21674,31 @@ stored playlists.") display a terminal in an Emacs buffer.") (license license:gpl3+)))) +(define-public emacs-vterm-toggle + ;; There have been no releases. + (let ((commit "d10239b7bb89b78dddb82f66ac2286bc0b02747b") + (revision "1")) + (package + (name "emacs-vterm-toggle") + (version (git-version "0.0.4" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jixiuf/vterm-toggle") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0r9n23wg9cfy10h5f9zqr8jpkvw34f9rylri3nxq870awjab7rqi")))) + (build-system emacs-build-system) + (propagated-inputs `(("emacs-vterm" ,emacs-vterm))) + (home-page "https://github.com/jixiuf/vterm-toggle") + (synopsis "Toggle between a vterm buffer and other buffers") + (description + "This package provides a DWIM way to switch from an Emacs buffer to +a vterm buffer and back again.") + (license license:gpl3+)))) + (define-public emacs-simple-mpc ;; There have been no releases. (let ((commit "bee8520e81292b4c7353e45b193f9a13b482f5b2") @@ -22808,9 +23037,9 @@ based on diff output.") (license license:gpl3+)))) (define-public emacs-all-the-icons-dired - (let ((commit "980b7747d6c4a7992a1ec56afad908956db0a519") + (let ((commit "fc2dfa1e9eb8bf1c402a675e7089638d702a27a5") (version "1.0") - (revision "1")) + (revision "2")) (package (name "emacs-all-the-icons-dired") (version (git-version version revision commit)) @@ -22823,7 +23052,7 @@ based on diff output.") (file-name (git-file-name name version)) (sha256 (base32 - "1pvbgyxfj4j205nj1r02045f1y4wgavdsk7f45hxkkhms1rj8jyy")))) + "0zhyhz4lhx0d8wwh1xxxf7ck4s621fk9757ql2ypxbr4iqh7sjlp")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-all-the-icons" ,emacs-all-the-icons))) @@ -23299,6 +23528,39 @@ Dash docsets.") through Dash docsets.") (license license:expat)))) +(define-public emacs-cascading-dir-locals + (let ((release "0.1") + (revision "0") + (commit "efdf5e6d62b955ee0ca3c170eae1d388799f9fa0")) + (package + (name "emacs-cascading-dir-locals") + (version (git-version release revision commit)) + (home-page "https://github.com/fritzgrabo/cascading-dir-locals") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1jwd99kk5l588n7wwi1x3b4bgimm66x1icna3n20pwaj49kf0zy8")))) + (build-system emacs-build-system) + (synopsis "Apply all @file{.dir-locals.el} from root to current directory") + (description + "This package provides a global minor mode that changes how Emacs +handles the lookup of applicable dir-locals files (@file{.dir-locals.el}): +instead of starting at the directory of the visited file and moving up the +directory tree only until a first dir-locals file is found, collect and apply +all (!) dir-locals files found from the current directory up to the root one. + +Values specified in files nearer to the current directory take precedence over +values in files farther away from it. + +You might want to use this to globally set dir-local variables that apply to +all of your projects, then override or add variables on a per-project basis.") + (license license:gpl3+)))) + (define-public emacs-calibredb (package (name "emacs-calibredb") @@ -23438,14 +23700,14 @@ well as an option for visually flashing evaluated s-expressions.") (define-public emacs-tramp (package (name "emacs-tramp") - (version "2.5.0.2") + (version "2.5.0.3") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "tramp-" version ".tar")) (sha256 - (base32 "16f782rjkmxxs5sz3wv4d46i7hbl483ashmrkvljf7lpnrl91s93")))) + (base32 "0c77d1ihn17lzk9jb7ss346ryprnbii1zmijl6zj0kk4lm8fpfl3")))) (build-system emacs-build-system) (arguments `(#:emacs ,emacs ;need D-Bus @@ -25248,21 +25510,21 @@ current buffer.") (define-public emacs-repl-toggle (package (name "emacs-repl-toggle") - (version "0.6.1") + (version "0.7.1") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/tomterl/repl-toggle") + (url "https://git.sr.ht/~tomterl/repl-toggle") (commit version))) (sha256 (base32 - "12h3xxja3isnhvrqx7m2g7a5d8h68cc85pbqyhiipfxyafyl1yxd")) + "0nycm8a4wwkkaif958z4m89slayp17k20lp2h7lvddjx8prn6yfp")) (file-name (git-file-name name version)))) (build-system emacs-build-system) (propagated-inputs `(("emacs-fullframe" ,emacs-fullframe))) - (home-page "https://github.com/tomterl/repl-toggle") + (home-page "https://git.sr.ht/~tomterl/repl-toggle") (synopsis "Switch to and from current major mode's REPL") (description "This package provides a function to switch to and from a REPL appropriate to the current major mode.") @@ -25367,14 +25629,14 @@ interface.") (define-public emacs-ivy-posframe (package (name "emacs-ivy-posframe") - (version "0.5.5") + (version "0.6.0") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "ivy-posframe-" version ".tar")) (sha256 - (base32 "184730grclxmlw6nfs41d4g6fvz9c6xnclvwgqx1ii0xm7p9xy95")))) + (base32 "07dzglrcdl54lkznyphw97xwd9bcwzdcgzkav0vqfk7f5cwh1wkf")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-ivy" ,emacs-ivy) @@ -25409,6 +25671,56 @@ can specify how popup-displaying functions occupy the screen.") (home-page "https://github.com/wasamasa/shackle") (license license:gpl3+)))) +(define-public emacs-showtip + (let ((commit "930da302809a4257e8d69425455b29e1cc91949b") + (revision "0")) + (package + (name "emacs-showtip") + (version (git-version "0.01" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/emacsorphanage/showtip") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "01zak0zhha6dp7a2hm28d065gjnc462iwpsfyxhbxgfzcdlicqc7")))) + (build-system emacs-build-system) + (home-page "https://github.com/emacsorphanage/showtip") + (synopsis "Show tip at cursor") + (description + "This library provide one function to show tooltip near the cursor.") + (license license:gpl2+)))) + +(define-public emacs-sdcv + ;; No tagged version upstream. + (let ((commit "943ae3e90cc9a0a88a37cc710acd7424fd4defc4" ) + (revision "0")) + (package + (name "emacs-sdcv") + (version (git-version "1.5.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/stardiviner/sdcv.el") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0i1ylvw7p46pkf3yyyzcdmdhsspzymnnnvx8s0i7vynngr5x0vzh")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-popup" ,emacs-popup) + ("emacs-pos-tip" ,emacs-pos-tip) + ("emacs-showtip" ,emacs-showtip))) + (home-page "https://www.emacswiki.org/emacs/download/sdcv.el") + (synopsis "Emacs interface for @code{sdcv}") + (description + "This plugin translates words with @code{sdcv}, and displays +translation using a tooltip or in a dedicated buffer.") + (license license:gpl3+)))) + (define-public emacs-helm-lacarte (let ((commit "40a6c449720be521435b6b1da7911af3a0b9dca0") (revision "1")) @@ -26441,34 +26753,36 @@ snippets for Emacs.") (license license:expat)))) (define-public emacs-org-roam - (package - (name "emacs-org-roam") - (version "1.2.3") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/org-roam/org-roam") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0n8c0yxqb62i39kn0d5x83s96vwc0nbg0sx5hplffnbkfbj88bba")))) - (build-system emacs-build-system) - (propagated-inputs - `(("emacs-company" ,emacs-company) - ("emacs-dash" ,emacs-dash) - ("emacs-emacsql-sqlite3" ,emacs-emacsql-sqlite3) - ("emacs-f" ,emacs-f) - ("emacs-org-ref" ,emacs-org-ref) - ("emacs-s" ,emacs-s))) - (home-page "https://github.com/org-roam/org-roam/") - (synopsis "Non-hierarchical note-taking with Org mode") - (description "Emacs Org Roam is a solution for taking non-hierarchical + (let ((commit "8ad57b121831eda8d226faa14ff2ba7ab652849c") + (revision "0") + (version "1.2.3")) + (package + (name "emacs-org-roam") + (version (git-version version revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/org-roam/org-roam") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "162qhb6rkpl1n0l8yhnwgagsx56ykaj9lchsny1id5z1257kgw9w")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-dash" ,emacs-dash) + ("emacs-emacsql-sqlite3" ,emacs-emacsql-sqlite3) + ("emacs-f" ,emacs-f) + ("emacs-org" ,emacs-org) + ("emacs-s" ,emacs-s))) + (home-page "https://github.com/org-roam/org-roam/") + (synopsis "Non-hierarchical note-taking with Org mode") + (description "Emacs Org Roam is a solution for taking non-hierarchical notes with Org mode. Notes are captured without hierarchy and are connected by tags. Notes can be found and created quickly. Org Roam should also work as a plug-and-play solution for anyone already using Org mode for their personal wiki.") - (license license:gpl3+))) + (license license:gpl3+)))) (define-public emacs-org-roam-bibtex (package @@ -27240,7 +27554,7 @@ rules about where space should be left to separate words and parentheses.") (description "This mode allows to paste whole buffers or parts of buffers to pastebin-like services. It supports more than one service and will failover if one service fails. More services can easily be added over time -and prefered services can easily be configured.") +and preferred services can easily be configured.") (license license:gpl3+))) (define-public emacs-keystore-mode @@ -27302,6 +27616,39 @@ and prefered services can easily be configured.") "This package adds a \"C-'\" binding to Ivy minibuffer that uses Avy.") (license license:gpl3+))) +(define-public emacs-vertico + (package + (name "emacs-vertico") + (version "0.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/minad/vertico") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0ijahr9dzs7v56w2n74xp0akzbzbxlw5852bywc4h24xdspakj52")))) + (build-system emacs-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'install 'build-doc + (lambda _ + (invoke "makeinfo" "vertico.texi")))))) + (native-inputs + `(("texinfo" ,texinfo))) + (home-page "https://github.com/minad/vertico") + (synopsis "Vertical interactive completion") + (description + "Vertico provides a minimalistic vertical completion UI, which is based +on Emacs' default completion system. By reusing the default system, it +achieves full compatibility with built-in Emacs commands and completion +tables. Vertico is pretty bare-bone and only provides a minimal set of +commands. Additional optional enhancements can be provided externally by +complementary packages.") + (license license:gpl3+))) + (define-public emacs-ivy-hydra (package (name "emacs-ivy-hydra") @@ -27325,3 +27672,4 @@ and prefered services can easily be configured.") quasi-prefix map, with many useful bindings. These bindings are shorter than usual, using mostly unprefixed keys.") (license license:gpl3+))) + diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm index fe5b3b25b3..309be612c6 100644 --- a/gnu/packages/emacs.scm +++ b/gnu/packages/emacs.scm @@ -15,7 +15,7 @@ ;;; Copyright © 2017 Jan Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com> -;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2019, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Jesse John Gildersleve <jessejohngildersleve@zohomail.eu> ;;; Copyright © 2019 Valentin Ignatev <valentignatev@gmail.com> ;;; Copyright © 2019 Leo Prikler <leo.prikler@student.tugraz.at> @@ -77,14 +77,14 @@ (define-public emacs (package (name "emacs") - (version "27.1") + (version "27.2") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/emacs/emacs-" version ".tar.xz")) (sha256 (base32 - "0h9f2wpmp6rb5rfwvqwv1ia1nw86h74p7hnz3vb3gjazj67i4k2a")) + "1ff182gjw9wqsbx1kj5gl2r5pbqhp4ar54g04j33fgz6g17cr9xl")) (patches (search-patches "emacs-exec-path.patch" "emacs-fix-scheme-indent-function.patch" "emacs-ignore-empty-xim-styles.patch" diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm index 413760ab72..480bbf7835 100644 --- a/gnu/packages/embedded.scm +++ b/gnu/packages/embedded.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2021 Julien Lepiller <julien@lepiller.eu> +;;; Copyright © 2021 Morgan Smith <Morgan.J.Smith@outlook.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -147,7 +148,9 @@ (files '("arm-none-eabi/include"))) (search-path-specification (variable "CROSS_CPLUS_INCLUDE_PATH") - (files '("arm-none-eabi/include"))) + (files '("arm-none-eabi/include" + "arm-none-eabi/include/c++" + "arm-none-eabi/include/c++/arm-none-eabi"))) (search-path-specification (variable "CROSS_LIBRARY_PATH") (files '("arm-none-eabi/lib")))))))) @@ -227,7 +230,41 @@ usable on embedded products.") "--enable-lite-exit" "--enable-newlib-global-atexit" "--enable-newlib-nano-formatted-io" - "--disable-nls")))) + "--disable-nls")) + ((#:phases phases) + `(modify-phases ,phases + ;; XXX: Most arm toolchains offer both *.a and *_nano.a as newlib + ;; and newlib-nano respectively. The headers are usually + ;; arm-none-eabi/include/newlib.h for newlib and + ;; arm-none-eabi/include/newlib-nano/newlib.h for newlib-nano. We + ;; have two different toolchain packages for each which works but + ;; is a little strange. + (add-after 'install 'hardlink-newlib + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + ;; The nano.specs file says that newlib-nano files should end + ;; in "_nano.a" instead of just ".a". Note that this applies + ;; to all the multilib folders too. + (for-each + (lambda (file) + (link file + (string-append + ;; Strip ".a" off the end + (substring file 0 (- (string-length file) 2)) + ;; Add "_nano.a" onto the end + "_nano.a"))) + (find-files + out + "^(libc.a|libg.a|librdimon.a|libstdc\\+\\+.a|libsupc\\+\\+.a)$")) + + ;; newlib.h is usually in this location instead so both + ;; newlib and newlib-nano can be in the toolchain at the same + ;; time + (mkdir (string-append out "/arm-none-eabi/include/newlib-nano")) + (symlink + "../newlib.h" + (string-append out "/arm-none-eabi/include/newlib-nano/newlib.h")) + #t))))))) (synopsis "Newlib variant for small systems with limited memory"))) @@ -317,7 +354,9 @@ usable on embedded products.") (files '("arm-none-eabi/include"))) (search-path-specification (variable "CROSS_CPLUS_INCLUDE_PATH") - (files '("arm-none-eabi/include"))) + (files '("arm-none-eabi/include" + "arm-none-eabi/include/c++" + "arm-none-eabi/include/c++/arm-none-eabi"))) (search-path-specification (variable "CROSS_LIBRARY_PATH") (files '("arm-none-eabi/lib")))))))) @@ -380,7 +419,7 @@ usable on embedded products.") "--with-newlib" ,(string-append "--with-gxx-include-dir=" (assoc-ref %outputs "out") - "/arm-none-eabi/include"))))) + "/arm-none-eabi/include/c++"))))) (native-inputs `(("newlib" ,newlib) ("xgcc" ,xgcc) diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm index 74f3f09926..584eb8800d 100644 --- a/gnu/packages/emulators.scm +++ b/gnu/packages/emulators.scm @@ -540,7 +540,7 @@ The following systems are supported: (define-public mgba (package (name "mgba") - (version "0.8.4") + (version "0.9.0") (source (origin (method git-fetch) @@ -549,7 +549,7 @@ The following systems are supported: (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0nqj4bnn5c2z1bq4bnbw1wznc0wpmq4sy3w8pipd6n6620b9m4qq")) + (base32 "16v08m9irping65d94vb5skp4m6nc63zj6bfajbzhmf944dswmi5")) (modules '((guix build utils))) (snippet ;; Make sure we don't use the bundled software. @@ -1589,7 +1589,7 @@ This is a part of the TiLP project.") (define-public mame (package (name "mame") - (version "0.229") + (version "0.230") (source (origin (method git-fetch) @@ -1598,7 +1598,7 @@ This is a part of the TiLP project.") (commit (apply string-append "mame" (string-split version #\.))))) (file-name (git-file-name name version)) (sha256 - (base32 "0s5q6fjk739p1bfh72fmh35xi13fwbrgjqrn45i5xzx3v3gadmbg")) + (base32 "0dk8q2691pycv9mq77h6sdfwjnwdrfwrblf8nwyykrmdawzi56ks")) (modules '((guix build utils))) (snippet ;; Remove bundled libraries. @@ -1743,7 +1743,7 @@ This is a part of the TiLP project.") ("texinfo" ,texinfo))) (inputs `(("alsa-lib" ,alsa-lib) - ("asio" ,asio) + ("asio" ,asio-1.12) ;the bundled copy is at 1.11 ("expat" ,expat) ("flac" ,flac) ("fontconfig" ,fontconfig) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index d7c9f9f142..cbe9d79d78 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -6,7 +6,7 @@ ;;; Copyright © 2016, 2017, 2018, 2019, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016, 2017, 2018 Theodoros Foradis <theodoros@foradis.org> ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2018, 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de> ;;; Copyright © 2018, 2019, 2020 Arun Isaac <arunisaac@systemreboot.net> @@ -17,7 +17,7 @@ ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2020,2021 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> -;;; Copyright © 2020 Ekaitz Zarraga <ekaitz@elenq.tech> +;;; Copyright © 2020, 2021 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; Copyright © 2020 B. Wilson <elaexuotee@wilsonb.com> ;;; Copyright © 2020, 2021 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020, 2021 Morgan Smith <Morgan.J.Smith@outlook.com> @@ -112,6 +112,8 @@ #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) #:use-module (gnu packages readline) + #:use-module (gnu packages serialization) + #:use-module (gnu packages sqlite) #:use-module (gnu packages swig) #:use-module (gnu packages tbb) #:use-module (gnu packages tcl) @@ -122,6 +124,7 @@ #:use-module (gnu packages web) #:use-module (gnu packages wxwidgets) #:use-module (gnu packages xml) + #:use-module (gnu packages xiph) #:use-module (gnu packages openkinect) #:use-module (gnu packages xorg)) @@ -266,7 +269,7 @@ plans and designs.") suite grouped together under the gEDA name. gEDA/gaf is a collection of tools which currently includes: gschem, a schematic capture program; gnetlist, a netlist generation program; gsymcheck, a syntax checker for schematic symbols; -gattrib, a spreadsheet programm that manipulates the properties of symbols of +gattrib, a spreadsheet programme that manipulates the properties of symbols of a schematic; libgeda, libraries for gschem gnetlist and gsymcheck; gsch2pcb, a tool to forward annotation from your schematic to layout using PCB; some minor utilities.") @@ -1248,7 +1251,7 @@ replacement for the OpenDWG libraries.") (define-public minicom (package (name "minicom") - (version "2.7.1") + (version "2.8") (source (origin (method git-fetch) @@ -1256,13 +1259,16 @@ replacement for the OpenDWG libraries.") (url "https://salsa.debian.org/minicom-team/minicom.git") (commit (string-append "v" version)))) (sha256 - (base32 "0f36wv015zpz1x895qv0z6marlynzyh0d5mfkyd7lfyy2xd1i2w0")) + (base32 "0kfihxbh9qkjk9m1932ajyqx384c2aj3d9yaphh3i9i7y1shxlpx")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--enable-lock-dir=/var/lock") #:phases (modify-phases %standard-phases + (add-after 'unpack 'make-git-checkout-writable + (lambda _ + (for-each make-file-writable (find-files ".")))) (replace 'bootstrap ;; autogen.sh needlessly hard-codes aclocal-1.14. (lambda _ @@ -2016,256 +2022,6 @@ parallel computing platforms. It also supports serial execution.") (license (list license:gpl2+ license:lgpl2.0+)))) ; freehdl's libraries -(define-public qucs - ;; Qucs 0.0.19 segfaults when using glibc-2.26. Temporarily build from git. - ;; TODO: When qucs-0.0.20 is released, revert the commit that introduced this - ;; comment and update the package. - (let ((commit "b4f27d9222568066cd59e4c387c51a35056c99d8") - (revision "0")) - (package - (name "qucs") - (version (git-version "0.0.19" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/Qucs/qucs") - (commit commit))) - (sha256 - (base32 "10bclay9xhkffmsh4j4l28kj1qpxx0pnxja5vx6305cllnq4r3gb")) - (file-name (string-append name "-" version "-checkout")))) - (build-system gnu-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'bootstrap 'patch-bootstrap - (lambda _ - (for-each patch-shebang - '("bootstrap" - "qucs/bootstrap" - "qucs-doc/bootstrap" - "qucs-core/bootstrap")) - #t)) - (add-before 'configure 'patch-configure - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "qucs/configure" - (("\\$QTDIR") (assoc-ref inputs "qt4"))) - #t)) - (add-after 'patch-configure 'patch-scripts - (lambda* (#:key inputs outputs #:allow-other-keys) - (substitute* '("qucs/qucs/qucsdigi" - "qucs/qucs/qucsdigilib" - "qucs/qucs/qucsveri") - (("\\$BINDIR") - (string-append (assoc-ref outputs "out") "/bin")) - (("freehdl-config") - (string-append (assoc-ref inputs "freehdl") "/bin/freehdl-config")) - (("freehdl-v2cc") - (string-append (assoc-ref inputs "freehdl") "/bin/freehdl-v2cc")) - (("cp ") - (string-append (assoc-ref inputs "coreutils") "/bin/cp ")) - (("glibtool") - (string-append (assoc-ref inputs "libtool") "/bin/libtool")) - (("sed") - (string-append (assoc-ref inputs "sed") "/bin/sed")) - (("iverilog") - (string-append (assoc-ref inputs "iverilog") "/bin/iverilog")) - (("vvp") - (string-append (assoc-ref inputs "iverilog") "/bin/vvp"))) - #t)) - (add-before 'check 'pre-check - (lambda _ - ;; The test suite requires a running X server. - (system "Xvfb :1 &") - (setenv "DISPLAY" ":1") - #t)) - (add-after 'install 'make-wrapper - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - ;; 'qucs' directly invokes gcc, hence this wrapping. - (wrap-program (string-append out "/bin/qucs") - `("CPLUS_INCLUDE_PATH" ":" prefix - (,(string-append (assoc-ref inputs "gcc-toolchain") - "/include"))) - `("PATH" ":" prefix - (,(string-append (assoc-ref inputs "gcc-toolchain") - "/bin"))) - `("LIBRARY_PATH" ":" prefix - (,(string-append (assoc-ref inputs "gcc-toolchain") - "/lib"))) - `("ADMSXMLBINDIR" ":" prefix - (,(string-append (assoc-ref inputs "adms") "/bin"))) - `("ASCOBINDIR" ":" prefix - (,(string-append (assoc-ref inputs "asco") "/bin"))) - `("QUCS_OCTAVE" ":" prefix - (,(string-append (assoc-ref inputs "octave") "/bin/octave"))))) - #t))) - #:parallel-build? #f ; race condition - #:configure-flags '("--disable-doc"))) ; we need octave-epstk - (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ("bison" ,bison) - ("flex" ,flex) - ("gperf" ,gperf) - ("libtool-native" ,libtool) - ("pkg-config" ,pkg-config) - ("python" ,python-2) ; for tests - ("matplotlib" ,python2-matplotlib) ; for tests - ("numpy" ,python2-numpy) ; for tests - ("xorg-server" ,xorg-server-for-tests))) ; for tests - (inputs - `(("adms" ,adms) - ("asco" ,asco) - ("coreutils" ,coreutils) - ("freehdl" ,freehdl) - ("gcc-toolchain" ,gcc-toolchain) - ("iverilog" ,iverilog) - ("libtool" ,libtool) - ("octave" ,octave-cli) - ("qt4" ,qt-4) - ("sed" ,sed))) - (home-page "http://qucs.sourceforge.net/") - (synopsis "Circuit simulator with graphical user interface") - (description - "Qucs is a circuit simulator with graphical user interface. The software -aims to support all kinds of circuit simulation types---e.g. DC, AC, -S-parameter, transient, noise and harmonic balance analysis. Pure digital -simulations are also supported.") - (license license:gpl2+)))) - -(define-public qucs-s - (package - (name "qucs-s") - (version "0.0.21") - (source (origin - (method url-fetch) - (uri (string-append "https://github.com/ra3xdh/qucs_s/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "12m1jwhb9qwvb141qzyskbxnw3wn1x22d02z4b4862p7xvccl5h7")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ; no tests - #:phases - (modify-phases %standard-phases - (add-before 'configure 'patch-scripts - (lambda* (#:key inputs #:allow-other-keys) - (substitute* '("qucs/qucsdigi" - "qucs/qucsdigilib" - "qucs/qucsveri") - (("\\$BINDIR") - (string-append (assoc-ref inputs "qucs") "/bin")) - (("freehdl-config") - (string-append (assoc-ref inputs "freehdl") "/bin/freehdl-config")) - (("freehdl-v2cc") - (string-append (assoc-ref inputs "freehdl") "/bin/freehdl-v2cc")) - (("cp ") - (string-append (assoc-ref inputs "coreutils") "/bin/cp ")) - (("glibtool") - (string-append (assoc-ref inputs "libtool") "/bin/libtool")) - (("sed") - (string-append (assoc-ref inputs "sed") "/bin/sed")) - (("iverilog") - (string-append (assoc-ref inputs "iverilog") "/bin/iverilog")) - (("vvp") - (string-append (assoc-ref inputs "iverilog") "/bin/vvp"))) - #t)) - (add-after 'patch-scripts 'patch-paths - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "qucs/main.cpp" - (((string-append "QucsSettings\\.Qucsator = QucsSettings\\.BinDir " - "\\+ \"qucsator\" \\+ executableSuffix")) - (string-append "}{ QucsSettings.Qucsator = \"" - (assoc-ref inputs "qucs") "/bin/qucsator\"")) - (((string-append "QucsSettings\\.XyceExecutable = " - "\"/usr/local/Xyce-Release-6.8.0-OPENSOURCE/bin/Xyce")) - (string-append "}{ QucsSettings.XyceExecutable = \"" - (assoc-ref inputs "xyce-serial") "/bin/Xyce")) - (((string-append "else QucsSettings\\.XyceParExecutable = " - "\"mpirun -np %p /usr/local" - "/Xyce-Release-6.8.0-OPENMPI-OPENSOURCE/bin/Xyce")) - (string-append "QucsSettings.XyceParExecutable = \"" - (assoc-ref inputs "mpi") "/bin/mpirun -np %p " - (assoc-ref inputs "xyce-parallel") "/bin/Xyce")) - (("else QucsSettings\\.NgspiceExecutable = \"ngspice\"") - (string-append "QucsSettings.NgspiceExecutable = " "\"" - (assoc-ref inputs "ngspice") "/bin/ngspice\""))) - (substitute* "qucs/extsimkernels/ngspice.cpp" - (("share/qucs/xspice_cmlib") "share/qucs-s/xspice_cmlib")) - (substitute* "qucs/qucs_actions.cpp" - (("qucstrans") - (string-append (assoc-ref inputs "qucs") "/bin/qucstrans")) - (("qucsattenuator") - (string-append (assoc-ref inputs "qucs") "/bin/qucsattenuator")) - (("qucsrescodes") - (string-append (assoc-ref inputs "qucs") "/bin/qucsrescodes"))) - #t)) - (add-after 'install 'install-scripts - (lambda* (#:key inputs outputs #:allow-other-keys) - (for-each - (lambda (script) - (let ((file (string-append "../qucs_s-" ,version - "/qucs/" script)) - (out (assoc-ref outputs "out"))) - (install-file file (string-append out "/bin")) - (chmod (string-append out "/bin/" script) #o555))) - '("qucsdigi" "qucsdigilib" "qucsveri")) - #t)) - (add-after 'install-scripts 'make-wrapper - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (file (string-append out "/bin/qucs-s")) - (qucs (assoc-ref inputs "qucs")) - (qucsator (string-append qucs "/bin/qucsator"))) - (wrap-program file - `("CPLUS_INCLUDE_PATH" ":" prefix - (,(string-append (assoc-ref inputs "gcc-toolchain") - "/include"))) - `("PATH" ":" prefix - (,(string-append (assoc-ref inputs "gcc-toolchain") - "/bin"))) - `("LIBRARY_PATH" ":" prefix - (,(string-append (assoc-ref inputs "gcc-toolchain") - "/lib"))) - `("QUCSATOR" ":" prefix (,qucsator)) - `("QUCSCONV" ":" prefix (,(string-append qucsator "/bin/qucsconv"))) - `("ADMSXMLBINDIR" ":" prefix (,(string-append (assoc-ref inputs "adms") - "/bin"))) - `("ASCOBINDIR" ":" prefix (,(string-append (assoc-ref inputs "asco") - "/bin"))) - `("QUCS_OCTAVE" ":" prefix (,(string-append (assoc-ref inputs "octave") - "/bin/octave")))) - (symlink qucsator (string-append out "/bin/qucsator")) - #t)))))) - (native-inputs - `(("libtool-native" ,libtool))) - (inputs - `(("adms" ,adms) - ("asco" ,asco) - ("coreutils" ,coreutils) - ("freehdl" ,freehdl) - ("gcc-toolchain" ,gcc-toolchain) - ("iverilog" ,iverilog) - ("libtool" ,libtool) - ("mpi" ,openmpi) - ("ngspice" ,ngspice) - ("octave" ,octave-cli) - ("qt4" ,qt-4) - ("qucs" ,qucs) - ("sed" ,sed) - ("xyce-serial" ,xyce-serial) - ("xyce-parallel" ,xyce-parallel))) - (home-page "https://ra3xdh.github.io/") - (synopsis "Circuit simulator with graphical user interface") - (description - "Qucs-S is a spin-off of the Qucs cross-platform circuit simulator. -The S letter indicates SPICE. The purpose of the Qucs-S subproject is to use -free SPICE circuit simulation kernels with the Qucs GUI. It provides the -simulator backends @code{Qucsator}, @code{ngspice} and @code{Xyce}.") - (license license:gpl2+))) - (define-public librepcb (package (name "librepcb") @@ -2601,104 +2357,120 @@ OpenSCAD code. It supports syntax highlighting, indenting and refilling of comments."))) (define-public freecad - (let ((commit-ref "7616153b3c31ace006169cdc2fdafab484498858") - (revision "1")) - (package - (name "freecad") - (version (git-version "0.18.5" revision commit-ref)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/FreeCAD/FreeCAD") - (commit commit-ref))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "16965yxnp2pq7nm8z3p0pjkzjdyq62vfrj8j3nk26bwc898czyn2")))) - (build-system qt-build-system) - (native-inputs - `(("doxygen" ,doxygen) - ("graphviz" ,graphviz) - ("qttools" ,qttools) - ("pkg-config" ,pkg-config) - ("python-pyside-2-tools" ,python-pyside-2-tools) - ("swig" ,swig))) - (inputs - `(("boost" ,boost) - ("coin3D" ,coin3D) - ("eigen" ,eigen) - ("freetype" ,freetype) - ("glew" ,glew) - ("hdf5" ,hdf5-1.10) - ("libarea" ,libarea) - ("libmedfile" ,libmedfile) - ("libspnav" ,libspnav) - ("libxi" ,libxi) - ("libxmu" ,libxmu) - ("openmpi" ,openmpi) - ("opencascade-occt" ,opencascade-occt) - ("python-matplotlib" ,python-matplotlib) - ("python-pyside-2" ,python-pyside-2) - ("python-shiboken-2" ,python-shiboken-2) - ("python-pivy" ,python-pivy) - ("python-wrapper" ,python-wrapper) - ("qtbase" ,qtbase) - ("qtsvg" ,qtsvg) - ("qtx11extras" ,qtx11extras) - ("qtxmlpatterns" ,qtxmlpatterns) - ("qtwebkit" ,qtwebkit) - ("tbb" ,tbb) - ("vtk" ,vtk) - ("xerces-c" ,xerces-c) - ("zlib" ,zlib))) - (arguments - `(#:tests? #f - #:configure-flags - (list - "-DBUILD_QT5=ON" - (string-append "-DCMAKE_INSTALL_LIBDIR=" (assoc-ref %outputs "out") "/lib") - (string-append "-DPYSIDE2UICBINARY=" - (assoc-ref %build-inputs "python-pyside-2-tools") - "/bin/uic") - (string-append "-DPYSIDE2RCCBINARY=" - (assoc-ref %build-inputs "python-pyside-2-tools") - "/bin/rcc") - "-DPYSIDE_LIBRARY=PySide2::pyside2" - (string-append - "-DPYSIDE_INCLUDE_DIR=" - (assoc-ref %build-inputs "python-pyside-2") "/include;" - (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2;" - (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2/QtCore;" - (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2/QtWidgets;" - (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2/QtGui;") - "-DSHIBOKEN_LIBRARY=Shiboken2::libshiboken" - (string-append "-DSHIBOKEN_INCLUDE_DIR=" - (assoc-ref %build-inputs "python-shiboken-2") - "/include/shiboken2")) - #:phases - (modify-phases %standard-phases - (add-after 'install 'wrap-pythonpath - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (wrap-program (string-append out "/bin/FreeCAD") - (list "GUIX_PYTHONPATH" - 'prefix (list (getenv "GUIX_PYTHONPATH")))))))))) - (home-page "https://www.freecadweb.org/") - (synopsis "Your Own 3D Parametric Modeler") - (description - "FreeCAD is a general purpose feature-based, parametric 3D modeler for + (package + (name "freecad") + (version "0.19.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FreeCAD/FreeCAD") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0c53q2iawy4yfp11czyc7lbr9ivp3r7v24x4c20myh11wyplffc0")))) + (build-system qt-build-system) + (native-inputs + `(("doxygen" ,doxygen) + ("graphviz" ,graphviz) + ("qttools" ,qttools) + ("pkg-config" ,pkg-config) + ("python-pyside-2-tools" ,python-pyside-2-tools) + ("swig" ,swig))) + (inputs + `(("boost" ,boost) + ("coin3D" ,coin3D) + ("double-conversion" ,double-conversion) + ("eigen" ,eigen) + ("freetype" ,freetype) + ("gl2ps" ,gl2ps) + ("glew" ,glew) + ("hdf5" ,hdf5-1.10) + ("jsoncpp" ,jsoncpp) + ("libarea" ,libarea) + ("libjpeg-turbo" ,libjpeg-turbo) + ("libmedfile" ,libmedfile) + ("libspnav" ,libspnav) + ("libtheora" ,libtheora) + ("libtiff" ,libtiff) + ("libxi" ,libxi) + ("libxmlplusplus" ,libxmlplusplus) + ("libxmu" ,libxmu) + ("lz4" ,lz4) + ("netcdf" ,netcdf) + ("opencascade-occt" ,opencascade-occt) + ("openmpi" ,openmpi) + ("proj" ,proj) + ("python-gitpython" ,python-gitpython) + ("python-matplotlib" ,python-matplotlib) + ("python-pivy" ,python-pivy) + ("python-pyside-2" ,python-pyside-2) + ("python-pyyaml" ,python-pyyaml) + ("python-shiboken-2" ,python-shiboken-2) + ("python-wrapper" ,python-wrapper) + ("qtbase" ,qtbase) + ("qtsvg" ,qtsvg) + ("qtwebkit" ,qtwebkit) + ("qtx11extras" ,qtx11extras) + ("qtxmlpatterns" ,qtxmlpatterns) + ("sqlite" ,sqlite) + ("tbb" ,tbb) + ("vtk" ,vtk-8) + ("xerces-c" ,xerces-c) + ("zlib" ,zlib))) + (arguments + `(#:tests? #f ; Project has no tests + #:configure-flags + (list + "-DBUILD_QT5=ON" + "-DBUILD_FLAT_MESH:BOOL=ON" + (string-append "-DCMAKE_INSTALL_LIBDIR=" (assoc-ref %outputs "out") "/lib") + (string-append "-DPYSIDE2UICBINARY=" + (assoc-ref %build-inputs "python-pyside-2-tools") + "/bin/uic") + (string-append "-DPYSIDE2RCCBINARY=" + (assoc-ref %build-inputs "python-pyside-2-tools") + "/bin/rcc") + "-DPYSIDE_LIBRARY=PySide2::pyside2" + (string-append + "-DPYSIDE_INCLUDE_DIR=" + (assoc-ref %build-inputs "python-pyside-2") "/include;" + (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2;" + (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2/QtCore;" + (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2/QtWidgets;" + (assoc-ref %build-inputs "python-pyside-2") "/include/PySide2/QtGui;") + "-DSHIBOKEN_LIBRARY=Shiboken2::libshiboken" + (string-append "-DSHIBOKEN_INCLUDE_DIR=" + (assoc-ref %build-inputs "python-shiboken-2") + "/include/shiboken2")) + #:phases + (modify-phases %standard-phases + (add-before 'configure 'restore-pythonpath + (lambda _ + (substitute* "src/Main/MainGui.cpp" + (("_?putenv\\(\"PYTHONPATH=\"\\);") "")))) + (add-after 'install 'wrap-pythonpath + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (wrap-program (string-append out "/bin/FreeCAD") + (list "PYTHONPATH" + 'prefix (list (getenv "PYTHONPATH")))))))))) + (home-page "https://www.freecadweb.org/") + (synopsis "Your Own 3D Parametric Modeler") + (description + "FreeCAD is a general purpose feature-based, parametric 3D modeler for CAD, MCAD, CAx, CAE and PLM, aimed directly at mechanical engineering and product design but also fits a wider range of uses in engineering, such as architecture or other engineering specialties. It is 100% Open Source (LGPL2+ license) and extremely modular, allowing for very advanced extension and customization.") - (license - (list - license:lgpl2.1+ - license:lgpl2.0+ - license:gpl3+ - license:bsd-3))))) + (license + (list + license:lgpl2.1+ + license:lgpl2.0+ + license:gpl3+ + license:bsd-3)))) (define-public libmedfile (package diff --git a/gnu/packages/fcitx5.scm b/gnu/packages/fcitx5.scm index cae8a74289..a01eacb7cb 100644 --- a/gnu/packages/fcitx5.scm +++ b/gnu/packages/fcitx5.scm @@ -172,14 +172,14 @@ client.") (define-public libime (package (name "libime") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (string-append "https://download.fcitx-im.org/fcitx5/libime/libime-" version "_dict.tar.xz")) (sha256 - (base32 "1w3cxk11kbfmz7snivxq948zfav6dy2245j12ghlxcmdxjshrlhq")))) + (base32 "1s8gzpzyn16pg9gm7kw1nhl09drdndi6j4mjam14ymqsrfsdqr1r")))) (build-system cmake-build-system) (inputs `(("fcitx5" ,fcitx5) @@ -190,7 +190,7 @@ client.") ("python" ,python))) ;needed to run test (home-page "https://github.com/fcitx/libime") (synopsis "Library for implementing generic input method") - (description "Libime is a library for implmenting various input methods + (description "Libime is a library for implementing various input methods editors.") (license license:lgpl2.1+))) diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm index 198653c639..d970fe7198 100644 --- a/gnu/packages/file-systems.scm +++ b/gnu/packages/file-systems.scm @@ -80,7 +80,7 @@ (define-public autofs (package (name "autofs") - (version "5.1.6") + (version "5.1.7") (source (origin (method url-fetch) @@ -88,7 +88,7 @@ "v" (version-major version) "/" "autofs-" version ".tar.xz")) (sha256 - (base32 "1vya21mb4izj3khcr3flibv7xc15vvx2v0rjfk5yd31qnzcy7pnx")))) + (base32 "1myfz6a3wj2c4j9h5g44zj796fdi82jhp1s92w2hg6xp2632csx3")))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -112,6 +112,12 @@ (("^searchpath=\".*\"") "searchpath=\"$PATH\"")) #t)) + (add-before 'configure 'fix-rpath + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "Makefile.rules" + (("^AUTOFS_LIB_LINK.*=" match) + (string-append match " -Wl,-rpath=" out "/lib")))))) (add-before 'install 'omit-obsolete-lookup_nis.so-link ;; Building lookup_yp.so depends on $(YPCLNT) but this doesn't, ;; leading to a make error. Since it's broken, comment it out. @@ -178,7 +184,7 @@ large and/or frequently changing (network) environment.") (home-page "https://bindfs.org") (synopsis "Bind mount a directory and alter permission bits") (description - "@command{bindfs} is a FUSE filesystem for mounting a directory to + "@command{bindfs} is a FUSE file system for mounting a directory to another location, similar to @command{mount --bind}. It can be used for: @itemize @item Making a directory read-only. @@ -245,9 +251,9 @@ another location, similar to @command{mount --bind}. It can be used for: (description "The @acronym{WebDAV, Web Distributed Authoring and Versioning} extension to the HTTP protocol defines a standard way to author resources on a remote Web -server. Davfs2 exposes such resources as a typical filesystem which can be used -by standard applications with no built-in support for WebDAV, such as the GNU -coreutils (@command{cp}, @command{mv}, etc.) or a graphical word processor. +server. Davfs2 exposes such resources as a typical file system which can be +used by standard applications with no built-in support for WebDAV, such as the +GNU coreutils (@command{cp}, @command{mv}, etc.) or a graphical word processor. Davfs2 works with most WebDAV servers with no or little configuration. It supports TLS (HTTPS), HTTP proxies, HTTP basic and digest authentication, and @@ -334,8 +340,8 @@ from a mounted file system.") (license license:gpl2+))) (define-public bcachefs-tools - (let ((commit "612f6b9ab73c7f46e0254355b707d494a8ad9270") - (revision "3")) + (let ((commit "bb6eccc2ecd4728871bfc70462d3a4a20daa9d68") + (revision "4")) (package (name "bcachefs-tools") (version (git-version "0.1" revision commit)) @@ -347,7 +353,7 @@ from a mounted file system.") (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "1a62wkv1i6pg5k1cjw7fzn933cbz8cp8y40cdpfd8rxjx0wg2szb")))) + (base32 "0ziqmcxbrak6bjck6s46hqrqx44zc97yaj0kbk3amsxf18rsfs0n")))) (build-system gnu-build-system) (arguments `(#:make-flags @@ -1077,14 +1083,14 @@ compatible directories.") (define-public python-dropbox (package (name "python-dropbox") - (version "11.2.0") + (version "11.5.0") (source (origin (method url-fetch) (uri (pypi-uri "dropbox" version)) (sha256 (base32 - "0ml6z37k6nkhkiy483kvifs8im8z7vabd2g9jl6fkf1fzy3n6bym")))) + "16bxx9xqx2s4d9khrw57a0bj4q7nc6kq355wl4pfddn9cqvh9rg2")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; Tests require a network connection. (native-inputs @@ -1189,10 +1195,10 @@ local file system using FUSE.") `(("go-github-com-mattn-go-sqlite3" ,go-github-com-mattn-go-sqlite3) ("go-github-com-hanwen-fuse" ,go-github-com-hanwen-fuse))) (home-page "https://github.com/oniony/TMSU") - (synopsis "Tag files and access them through a virtual filesystem") + (synopsis "Tag files and access them through a virtual file system") (description "TMSU is a tool for tagging your files. It provides a simple -command-line utility for applying tags and a virtual filesystem to give you a +command-line utility for applying tags and a virtual file system to give you a tag-based view of your files from any other program. TMSU does not alter your files in any way: they remain unchanged on disk, or on the network, wherever your put them. TMSU maintains its own database and you simply gain an diff --git a/gnu/packages/file.scm b/gnu/packages/file.scm index bed272ae35..6fb98244f9 100644 --- a/gnu/packages/file.scm +++ b/gnu/packages/file.scm @@ -47,6 +47,8 @@ `(("self" ,this-package)) '())) + (properties + `((release-monitoring-url . "http://ftp.astron.com/pub/file/"))) (synopsis "File type guesser") (description "The file command is a file type guesser, a command-line tool that tells diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 3ccc077b94..f8d15b8856 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -601,6 +601,7 @@ other machines/servers. Electrum does not download the Bitcoin blockchain.") ("python-hidapi" ,python-hidapi) ("python-jsonrpclib-pelix" ,python-jsonrpclib-pelix) ("python-keepkey" ,python-keepkey) + ("python-pathvalidate" ,python-pathvalidate) ("python-protobuf" ,python-protobuf) ("python-pyaes" ,python-pyaes) ("python-pyqt" ,python-pyqt) @@ -651,7 +652,7 @@ other machines/servers. Electroncash does not download the Bitcoin Cash blockch ;; the system's dynamically linked library. (package (name "monero") - (version "0.17.1.9") + (version "0.17.2.0") (source (origin (method git-fetch) @@ -671,7 +672,7 @@ other machines/servers. Electroncash does not download the Bitcoin Cash blockch "external/unbound")) #t)) (sha256 - (base32 "0jqss4csvkcrhrmaa3vrnyv6yiwqpbfw7037clx9xcfm4qrrfiwy")))) + (base32 "0jwlmrpzisvw1c06cvd5b3s3hd4w0pa1qmrypfwah67qj3x6hnb6")))) (build-system cmake-build-system) (native-inputs `(("doxygen" ,doxygen) @@ -761,7 +762,7 @@ the Monero command line client and daemon.") (define-public monero-gui (package (name "monero-gui") - (version "0.17.1.9") + (version "0.17.2.0") (source (origin (method git-fetch) @@ -778,7 +779,7 @@ the Monero command line client and daemon.") (delete-file-recursively "monero") #t)) (sha256 - (base32 "0vpvpvsbbj547yir15g84qy9l9lwbip795zlliz79i7d66l23b1w")))) + (base32 "17il26gh0g69x7lqkyb461x1712959wajg3iadx0p08djr3m13mf")))) (build-system qt-build-system) (native-inputs `(,@(package-native-inputs monero) @@ -1404,16 +1405,16 @@ following three utilities are included with the library: (define-public bitcoin-unlimited (package (name "bitcoin-unlimited") - (version "1.9.0.1") + (version "1.9.1.1") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/BitcoinUnlimited/BitcoinUnlimited") + (url "https://gitlab.com/bitcoinunlimited/BCHUnlimited.git/") (commit (string-append "BCHunlimited" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1pan24g3d5csa004d7zvlizj4mv58ly5i579341isp944phl3g5v")))) + (base32 "0vyvfawss40v9jaic9zq0z3cjvxiq04d4wgq4rnkha7ilm9zqyd7")))) (build-system gnu-build-system) (native-inputs `(("autoconf" ,autoconf) diff --git a/gnu/packages/flashing-tools.scm b/gnu/packages/flashing-tools.scm index 669c45fd68..4b597dca50 100644 --- a/gnu/packages/flashing-tools.scm +++ b/gnu/packages/flashing-tools.scm @@ -7,6 +7,7 @@ ;;; Copyright © 2017 Jonathan Brielmaier <jonathan.brielmaier@web.de> ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -32,18 +33,23 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system python) + #:use-module (gnu packages autotools) + #:use-module (gnu packages admin) + #:use-module (gnu packages base) #:use-module (gnu packages bison) + #:use-module (gnu packages boost) #:use-module (gnu packages compression) - #:use-module (gnu packages flex) #:use-module (gnu packages elf) + #:use-module (gnu packages flex) + #:use-module (gnu packages ghostscript) + #:use-module (gnu packages gnupg) + #:use-module (gnu packages groff) #:use-module (gnu packages pciutils) #:use-module (gnu packages pkg-config) #:use-module (gnu packages libusb) #:use-module (gnu packages libftdi) #:use-module (gnu packages pciutils) - #:use-module (gnu packages qt) - #:use-module (gnu packages autotools) - #:use-module (gnu packages admin)) + #:use-module (gnu packages qt)) (define-public flashrom (package @@ -476,3 +482,38 @@ ME as far as possible (it only edits ME firmware image files).") (description "@code{uefitool} is a graphical image file editor for Unifinished Extensible Firmware Interface (UEFI) images.") (license license:bsd-2))) + +(define-public srecord + (package + (name "srecord") + (version "1.64") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/srecord/srecord/" + version "/srecord-" version ".tar.gz")) + (sha256 + (base32 + "1qk75q0k5vzmm3932q9hqz2gp8n9rrdfjacsswxc02656f3l3929")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list (string-append "SH=" + (assoc-ref %build-inputs "bash") + "/bin/bash")))) + (inputs + `(("boost" ,boost) + ("libgcrypt" ,libgcrypt))) + (native-inputs + `(("bison" ,bison) + ("diffutils" ,diffutils) + ("ghostscript" ,ghostscript) + ("groff" ,groff) + ("libtool" ,libtool) + ("which" ,which))) + (home-page "http://srecord.sourceforge.net/") + (synopsis "Tools for EPROM files") + (description "The SRecord package is a collection of powerful tools for +manipulating EPROM load files. It reads and writes numerous EPROM file +formats, and can perform many different manipulations.") + (license license:gpl3+))) diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm index d67c5dc466..764baf800d 100644 --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@ -998,7 +998,7 @@ Unicode Charts. It was developed for use with DejaVu Fonts project.") (arguments `(#:configure-flags (list "--disable-static"))) (native-inputs - `(("gtk-doc" ,gtk-doc) + `(("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("python" ,python-wrapper))) (inputs diff --git a/gnu/packages/freedesktop.scm b/gnu/packages/freedesktop.scm index de8355c419..9e491ea6d8 100644 --- a/gnu/packages/freedesktop.scm +++ b/gnu/packages/freedesktop.scm @@ -22,6 +22,7 @@ ;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz> ;;; Copyright © 2020 Anders Thuné <asse.97@gmail.com> ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> +;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot> ;;; ;;; This file is part of GNU Guix. ;;; @@ -173,7 +174,7 @@ ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) ("gperf" ,gperf) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("python" ,python-wrapper) ("xsltproc" ,libxslt))) @@ -261,7 +262,7 @@ application-centers for distributions.") ("docbook-xml" ,docbook-xml-4.1.2) ("docbook-xsl" ,docbook-xsl) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("libtool" ,libtool) ("perl" ,perl) ("pkg-config" ,pkg-config) @@ -313,7 +314,7 @@ for videoconferencing.") `(("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) ("pkg-config" ,pkg-config) - ("gtk-doc" ,gtk-doc))) + ("gtk-doc" ,gtk-doc/stable))) (inputs `(("dbus" ,dbus) ("glib" ,glib))) @@ -1230,7 +1231,7 @@ Analysis and Reporting Technology) functionality.") ("glib:bin" ,glib "bin") ; for glib-mkenums ("gnome-common" ,gnome-common) ; TODO: Why is this needed? ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("pkg-config" ,pkg-config) ("xsltproc" ,libxslt))) @@ -1626,7 +1627,7 @@ wish to perform colour calibration.") `(("eudev" ,eudev) ("glib:bin" ,glib "bin") ; for {glib-,}mkenums ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) ; for 88 KiB of API documentation + ("gtk-doc" ,gtk-doc/stable) ; for 88 KiB of API documentation ("pkg-config" ,pkg-config))) (inputs `(("glib" ,glib) @@ -1948,6 +1949,26 @@ encoding names are iconv-compatible.") ;; combination is GPL 2.0+. (license license:gpl2+))) +(define-public python-cchardet + (package + (name "python-cchardet") + (version "2.1.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cchardet" version)) + (sha256 + (base32 + "1bqfz85cd51sw0bvhvdq9ikccxi2ld7g5jpni4jkq1a5clrvca64")))) + (build-system python-build-system) + (inputs + `(("uchardet" ,uchardet))) + (home-page "https://github.com/PyYoshi/cChardet") + (synopsis "High-performance character encoding detection for Python") + (description "cChardet is a character encoding detector, written in +Python, that binds to the C library @code{uchardet} to increase performance.") + (license license:gpl2+))) + (define-public udiskie (package (name "udiskie") @@ -2225,7 +2246,7 @@ fallback to generic Systray support if none of those are available.") #t)))))) (native-inputs `(("pkg-config" ,pkg-config) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("docbook-xsl" ,docbook-xsl) ("docbook-xml" ,docbook-xml) ("libxml2" ,libxml2) diff --git a/gnu/packages/ftp.scm b/gnu/packages/ftp.scm index b178063556..961ce3a464 100644 --- a/gnu/packages/ftp.scm +++ b/gnu/packages/ftp.scm @@ -1,9 +1,10 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2018, 2021, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2016–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Rene Saavedra <rennes@openmailbox.org> +;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -28,12 +29,14 @@ #:use-module (gnu packages) #:use-module (gnu packages autotools) #:use-module (gnu packages check) + #:use-module (gnu packages cpio) #:use-module (gnu packages compression) #:use-module (gnu packages freedesktop) #:use-module (gnu packages gettext) #:use-module (gnu packages glib) #:use-module (gnu packages gtk) #:use-module (gnu packages libidn) + #:use-module (gnu packages linux) #:use-module (gnu packages ncurses) #:use-module (gnu packages nettle) #:use-module (gnu packages pkg-config) @@ -115,6 +118,8 @@ reliability in mind.") (("a freeware program") "free software")) #t)))) + (properties + `((release-monitoring-url . "https://www.ncftp.com/download/"))) (build-system gnu-build-system) (arguments '(#:phases @@ -251,40 +256,82 @@ directory comparison and more.") (properties '((upstream-name . "FileZilla"))))) (define-public vsftpd - (package - (name "vsftpd") - (version "3.0.3") - (source (origin - (method url-fetch) - (uri (string-append "https://security.appspot.com/downloads/" - name "-" version ".tar.gz")) - (sha256 - (base32 - "1xsyjn68k3fgm2incpb3lz2nikffl9by2safp994i272wvv2nkcx")))) - (build-system gnu-build-system) - (arguments - `(#:make-flags '("LDFLAGS=-lcrypt") - #:tests? #f ; No tests exist. - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-installation-directory - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "Makefile" - (("/usr") (assoc-ref outputs "out"))) - #t)) - (add-before 'install 'mkdir - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (mkdir-p out) - (mkdir (string-append out "/sbin")) - (mkdir (string-append out "/man")) - (mkdir (string-append out "/man/man5")) - (mkdir (string-append out "/man/man8")) - #t))) - (delete 'configure)))) - (synopsis "vsftpd FTP daemon") - (description "@command{vsftpd} is a daemon that listens on a TCP socket + ;; Use a significantly patched CentOS variant with TLSv1.2 support and + ;; further bug and security fixes. + (let ((upstream-version "3.0.3") + (centos-version "8.3.2011") + (revision "32.el8")) + (package + (name "vsftpd") + (version (string-append upstream-version "-" revision)) + (source + (origin + (method url-fetch) + (uri (string-append + "https://vault.centos.org/centos/" centos-version + "/AppStream/Source/SPackages/vsftpd-" upstream-version "-" + revision ".src.rpm")) + (sha256 + (base32 "1xl0kqcismf82hl99klqbvvpylpyk1yr1qjy5hd8f80cj4lyl0f4")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags '("LDFLAGS=-lcrypt -lssl -pie") + #:tests? #f ; no tests exist + #:phases + (modify-phases %standard-phases + (replace 'unpack + (lambda* (#:key source #:allow-other-keys) + (invoke "7z" "e" source "-ocpio") + (invoke "cpio" "-idmv" + (string-append "--file=cpio/vsftpd-" + ,upstream-version "-" ,revision + ".src.cpio")) + (invoke "tar" "xvf" + (string-append "vsftpd-" ,upstream-version ".tar.gz")) + (chdir (string-append "vsftpd-" ,upstream-version)))) + (add-after 'unpack 'apply-CentOS-patches + ;; Apply all patches as enumerated in vsftpd.spec, in order: + ;; simply using FIND-FILES would silently corrupt the result. + (lambda _ + (call-with-input-file "../vsftpd.spec" + (lambda (port) + (use-modules (ice-9 rdelim)) + (let loop () + (let ((line (read-line port))) + (unless (eof-object? line) + (when (string-prefix? "Patch" line) + (let* ((space (string-rindex line #\space)) + (patch (string-drop line (+ 1 space)))) + (format #t "Applying '~a'.\n" patch) + (invoke "patch" "-Np1" + "-i" (string-append "../" patch)))) + (loop)))))))) + (add-after 'unpack 'patch-installation-directory + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "Makefile" + (("/usr") (assoc-ref outputs "out"))) + #t)) + (add-before 'install 'mkdir + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (mkdir-p out) + (mkdir (string-append out "/sbin")) + (mkdir (string-append out "/man")) + (mkdir (string-append out "/man/man5")) + (mkdir (string-append out "/man/man8")) + #t))) + (delete 'configure)))) + (native-inputs + ;; Used to unpack the source RPM. + `(("p7zip" ,p7zip) + ("cpio" ,cpio))) + (inputs + `(("libcap" ,libcap) + ("linux-pam" ,linux-pam) + ("openssl" ,openssl))) + (home-page "https://security.appspot.com/vsftpd.html") + (synopsis "Share files securely over FTP or FTPS") + (description "@command{vsftpd} is a daemon that listens on a TCP socket for clients and gives them access to local files via File Transfer Protocol.") - (home-page "https://security.appspot.com/vsftpd.html") - (license gpl2))) + (license gpl2)))) diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm index 21a4ef8c0d..83f41da850 100644 --- a/gnu/packages/game-development.scm +++ b/gnu/packages/game-development.scm @@ -20,6 +20,7 @@ ;;; Copyright © 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Timotej Lazar <timotej.lazar@araneo.si> ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> +;;; Copyright © 2021 Alexandru-Sergiu Marton <brown121407@posteo.ro> ;;; ;;; This file is part of GNU Guix. ;;; @@ -55,6 +56,7 @@ #:use-module (gnu packages base) #:use-module (gnu packages boost) #:use-module (gnu packages compression) + #:use-module (gnu packages check) #:use-module (gnu packages curl) #:use-module (gnu packages documentation) #:use-module (gnu packages fltk) @@ -446,7 +448,7 @@ support.") (define-public tiled (package (name "tiled") - (version "1.4.3") + (version "1.5.0") (source (origin (method git-fetch) (uri (git-reference @@ -455,7 +457,7 @@ support.") (file-name (git-file-name name version)) (sha256 (base32 - "14bx4gywfzr2f07ldqk3la82g5ag1agj21f7ccrxip12ydmpx0xb")))) + "1prajkx1xpp3csa0xpkrn3c2cnzvmwzxgrqb9d3gqszp3sllr2dg")))) (build-system gnu-build-system) (inputs `(("qtbase" ,qtbase) @@ -1090,7 +1092,7 @@ to create fully featured games and multimedia programs in the python language.") (define-public python2-pygame-sdl2 (let ((real-version "2.1.0") - (renpy-version "7.4.2")) + (renpy-version "7.4.4")) (package (inherit python2-pygame) (name "python2-pygame-sdl2") @@ -1100,7 +1102,7 @@ to create fully featured games and multimedia programs in the python language.") (method url-fetch) (uri (string-append "https://www.renpy.org/dl/" renpy-version "/pygame_sdl2-" version ".tar.gz")) - (sha256 (base32 "1lpk69nh379x5pdlr838x5b49spzksn9hyqiq2g0q28k0xk4lm67")) + (sha256 (base32 "1lj5c3kfnl8s824j3hs47dg3g5rlabscmwrbb0lgpyy4633pv9ka")) (modules '((guix build utils))) (snippet '(begin @@ -1143,13 +1145,13 @@ developed mainly for Ren'py.") (define-public python2-renpy (package (name "python2-renpy") - (version "7.4.2") + (version "7.4.4") (source (origin (method url-fetch) (uri (string-append "https://www.renpy.org/dl/" version "/renpy-" version "-source.tar.bz2")) - (sha256 (base32 "1mlrq9q3r36izyskq674qhp8s32iirvvfb4r8z6hi26189aaydsw")) + (sha256 (base32 "1cbbvsk1snjrsh59blb8q2h86555gi23pylmwlnk9dx0jxckdi21")) (modules '((guix build utils))) (patches (search-patches @@ -1760,6 +1762,44 @@ provide high-quality 3D rendering, it contains an animation editor, and can be scripted in a Python-like language.") (license license:expat))) +(define-public entt + (package + (name "entt") + (version "3.7.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/skypjack/entt") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0nzvnhiw3r6nkmxp749zwxc8kzja09nijyxibdbri3g2i7pysf58")))) + (build-system cmake-build-system) + (arguments + `(#:configure-flags (list "-DENTT_BUILD_TESTING=ON" + "-DENTT_FIND_GTEST_PACKAGE=ON" + "-DENTT_BUILD_DOCS=ON") + ;; Only tests are compiled, and they need assertions to work correctly. + #:build-type "Debug")) + (native-inputs + `(;; for testing + ("googletest" ,googletest) + ;; for documentation + ("doxygen" ,doxygen) + ("graphviz" ,graphviz))) + (synopsis "Entity component system") + (description "EnTT is a header-only library, containing (among other things) +@itemize +@item an entity component system based on sparse sets, +@item a configuration system using the monostate pattern, +@item a static reflection system, +@item and a cooperative scheduler. +@end itemize") + (home-page "https://github.com/skypjack/entt") + (license (list license:expat ; code + license:cc-by4.0)))) ; documentation + (define-public eureka (package (name "eureka") diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 9fbfad040e..9b2bbb036b 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -52,7 +52,7 @@ ;;; Copyright © 2020 Jack Hill <jackhill@jackhill.us> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> -;;; Copyright © 2020 Trevor Hass <thass@okstate.edu> +;;; Copyright © 2020, 2021 Trevor Hass <thass@okstate.edu> ;;; Copyright © 2020, 2021 Leo Prikler <leo.prikler@student.tugraz.at> ;;; Copyright © 2020 Lu hux <luhux@outlook.com> ;;; Copyright © 2020 Tomás Ortín Fernández <tomasortin@mailbox.org> @@ -743,7 +743,7 @@ battlestar (explore the world around, starting from dying spaceship), phantasia (role-play as an rogue), trek (hunt the Klingons, and save the Federation), and wump (hunt the big smelly Wumpus in a dark cave). -Quizes: arithmetic, and quiz.") +Quizzes: arithmetic and quiz.") ;; "Auxiliary and data files, distributed with the games in NetBSD, but ;; not bearing copyright notices, probably fall under the terms of the UCB ;; or NetBSD copyrights and licences. The file "fortune/Notes" contains a @@ -2325,7 +2325,7 @@ and defeat them with your bubbles!") (name "solarus") ;; XXX: When updating this package, please also update hash in ;; `solarus-quest-editor' below. - (version "1.6.4") + (version "1.6.5") (source (origin (method git-fetch) @@ -2334,7 +2334,7 @@ and defeat them with your bubbles!") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1n6l91yyqjx0pz4w1lp3yybpq0fs2yjswfcm8c1wjfkxwiznbdxi")))) + (base32 "0ny9dgqphjv2l39rff2621hnrzpf8qin8vmnv7jdz20azjk4m8id")))) (build-system cmake-build-system) (arguments `(#:phases @@ -2393,19 +2393,9 @@ in mind.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1qbc2j9kalk7xqk9j27s7wnm5zawiyjs47xqkqphw683idmzmjzn")))) + (base32 "1pvjgd4faxii5sskw1h55lw90hlbazhwni8nxyywzrmkjbq7irm0")))) (arguments - `(#:tests? #false ;no test - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-qt-build - ;; XXX: Fix build with Qt 5.15. It has been applied upstream as - ;; 81d5c7f1 and can be removed at next upgrade. - (lambda _ - (substitute* "src/entities/jumper.cpp" - (("#include <QPainter>" all) - (string-append all "\n" "#include <QPainterPath>\n"))) - #t))))) + `(#:tests? #false)) ; no test suite (inputs `(("solarus" ,solarus) ,@(package-inputs solarus))) @@ -3464,7 +3454,7 @@ match, cannon keep, and grave-itation pit.") (define-public minetest (package (name "minetest") - (version "5.4.0") + (version "5.4.1") (source (origin (method git-fetch) (uri (git-reference @@ -3473,7 +3463,7 @@ match, cannon keep, and grave-itation pit.") (file-name (git-file-name name version)) (sha256 (base32 - "1a17g6cmxrscnqwpwrd4w2ck3dgvplyfq4kzyimilfpqar1q69j9")) + "062ilb7s377q3hwfhl8q06vvcw2raydz5ljzlzwy2dmyzmdcndb8")) (modules '((guix build utils))) (snippet '(begin @@ -3496,8 +3486,13 @@ match, cannon keep, and grave-itation pit.") #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-sources - (lambda _ + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "src/filesys.cpp" + ;; Use store-path for "rm" instead of non-existing FHS path. + (("\"/bin/rm\"") + (string-append "\"" (assoc-ref inputs "coreutils") "/bin/rm\""))) (substitute* "src/CMakeLists.txt" + ;; Let minetest binary remain in build directory. (("set\\(EXECUTABLE_OUTPUT_PATH .*\\)") "")) (substitute* "src/unittest/test_servermodmanager.cpp" ;; do no override MINETEST_SUBGAME_PATH @@ -3521,7 +3516,8 @@ match, cannon keep, and grave-itation pit.") (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(("curl" ,curl) + `(("coreutils" ,coreutils) + ("curl" ,curl) ("freetype" ,freetype) ("gettext" ,gettext-minimal) ("gmp" ,gmp) @@ -3561,7 +3557,7 @@ in different ways.") (file-name (git-file-name name version)) (sha256 (base32 - "11dz36z0pj2r7i8xm8v5lskzws81ckj6sc0avlmvdl8qdc9x83w5")))) + "0i45lbnikvgj9kxdp0yphpjjwjcgp4ibn49xkj78j5ic1s9n8jd4")))) (build-system trivial-build-system) (native-inputs `(("source" ,source))) @@ -5847,7 +5843,7 @@ for Un*x systems with X11.") (define-public freeciv (package (name "freeciv") - (version "2.6.3") + (version "2.6.4") (source (origin (method url-fetch) @@ -5859,7 +5855,7 @@ for Un*x systems with X11.") (version-major+minor version) "/" version "/freeciv-" version ".tar.bz2"))) (sha256 - (base32 "1lgq7wcbhwpy2yqdw4biwfmp5q8fh7lhlwxcgm0fpaapfl12whvp")))) + (base32 "1kn122f57wn5a8ryxaz73dlbd5m93mqx3bqmmz2lkgdccrvrbns0")))) (build-system gnu-build-system) (inputs `(("curl" ,curl) @@ -8738,7 +8734,7 @@ where the player draws runes in real time to effect the desired spell.") (define-public edgar (package (name "edgar") - (version "1.33") + (version "1.34") (source (origin (method url-fetch) @@ -8746,7 +8742,7 @@ where the player draws runes in real time to effect the desired spell.") (string-append "https://github.com/riksweeney/edgar/releases/download/" version "/edgar-" version "-1.tar.gz")) (sha256 - (base32 "1mbx7dvizdca4g1blcv3bdh6yxd13k47rkya4rdzg0nvvz24m175")))) + (base32 "1121rq5wk3g8rs413av84s2kcy6qj6maspgy2vsxs36c2jd3yygl")))) (build-system gnu-build-system) (arguments '(#:tests? #f ; there are no tests #:make-flags diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm index e9f5889570..9dff1a1238 100644 --- a/gnu/packages/gcc.scm +++ b/gnu/packages/gcc.scm @@ -571,20 +571,19 @@ It also includes runtime support libraries for these languages."))) (define-public gcc-10 (package (inherit gcc-8) - (version "10.2.0") + (version "10.3.0") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/gcc/gcc-" version "/gcc-" version ".tar.xz")) (sha256 (base32 - "130xdkhmz1bc2kzx061s3sfwk36xah1fw5w332c0nzwwpdl47pdq")) + "0i6378ig6h397zkhd7m4ccwjx5alvzrf2hm27p1pzwjhlv0h9x34")) (patches (search-patches "gcc-9-strmov-store-file-names.patch" "gcc-5.0-libvtv-runpath.patch")))))) ;; Note: When changing the default gcc version, update -;; the gcc-toolchain-* definitions and the gfortran definition -;; accordingly. +;; the gcc-toolchain-* definitions. (define-public gcc gcc-8) (define-public (make-libstdc++ gcc) diff --git a/gnu/packages/genealogy.scm b/gnu/packages/genealogy.scm index dde0fddc25..2c3781d361 100644 --- a/gnu/packages/genealogy.scm +++ b/gnu/packages/genealogy.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net> -;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -39,7 +39,7 @@ (define-public gramps (package (name "gramps") - (version "5.1.2") + (version "5.1.3") (source (origin (method git-fetch) @@ -48,7 +48,7 @@ (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "175iwvdp6c1a8rskl2wpk4yvzl437j7hm23v481974a85qy43iv8")))) + (base32 "109dwkswz2h2328xkqk2zj736d117s9pp7rz5cc1qg2vxn1lpm93")))) (build-system python-build-system) (native-inputs `(("gettext" ,gettext-minimal) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index c988d6b114..c4bdb6aca0 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -151,7 +151,7 @@ ("automake" ,automake) ("docbook-xml" ,docbook-xml-4.3) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("libtool" ,libtool) ("pkg-config" ,pkg-config) ("python" ,python-wrapper) @@ -294,36 +294,6 @@ and driving.") (home-page "https://wiki.gnome.org/Apps/Maps") (license license:gpl2+))) -(define-public libgaiagraphics - (package - (name "libgaiagraphics") - (version "0.5") - (source - (origin - (method url-fetch) - (uri (string-append "https://www.gaia-gis.it/gaia-sins/libgaiagraphics-" - version ".tar.gz")) - (sha256 - (base32 - "076afqv417ag3hfvnif0qc7qscmnq1dsf6y431yygwgf34rjkayc")))) - (build-system gnu-build-system) - (native-inputs - `(("pkg-config" ,pkg-config))) - (inputs - `(("cairo" ,cairo) - ("libpng" ,libpng) - ("libjpeg-turbo" ,libjpeg-turbo) - ("libtiff" ,libtiff) - ("libgeotiff" ,libgeotiff) - ("proj.4" ,proj.4) - ("libxml2" ,libxml2) - ("zlib" ,zlib))) - (synopsis "Gaia common graphics support") - (description "libgaiagraphics is a library supporting - common-utility raster handling methods.") - (home-page "https://www.gaia-gis.it/fossil/libgaiagraphics/index") - (license license:lgpl3+))) - (define-public libgeotiff (package (name "libgeotiff") @@ -373,6 +343,63 @@ writing GeoTIFF information tags.") (license:non-copyleft "file://LICENSE" "See LICENSE in the distribution."))))) +(define-public librasterlite2 + (package + (name "librasterlite2") + (version "1.1.0-beta1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://www.gaia-gis.it/gaia-sins/librasterlite2-sources/" + "librasterlite2-" version ".tar.gz")) + (sha256 + (base32 + "1x24gqp4hsq97c31ncwxblab0x0863q8v1z42jil7lvsq3glqa7p")))) + (build-system gnu-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("cairo" ,cairo) + ("curl" ,curl) + ("freetype" ,freetype) + ("freexl" ,freexl) + ("giflib" ,giflib) + ("libgeotiff" ,libgeotiff) + ("libjpeg-turbo" ,libjpeg-turbo) + ("libpng" ,libpng) + ("librttopo" ,librttopo) + ("libspatialite" ,libspatialite) + ("libtiff" ,libtiff) + ("libwebp" ,libwebp) + ("libxml2" ,libxml2) + ("lz4" ,lz4) + ("minizip" ,minizip) + ("openjpeg" ,openjpeg) + ("proj" ,proj) + ("sqlite" ,sqlite) + ("zstd" ,zstd "lib"))) + (synopsis "Library to work with huge raster coverages using a SpatiaLite") + (description + "librasterlite2 is a library that stores and retrieves huge raster +coverages using a SpatiaLite DBMS.") + (home-page "https://www.gaia-gis.it/fossil/librasterlite2/index") + ;; For the genuine librasterlite-sources holds: + ;; Any of the licenses MPL1.1, GPL2+ or LGPL2.1+ may be picked. + ;; Files under src/control_points are from GRASS + ;; and are licensed under GPL2+ only. + ;; src/md5.[ch]: Placed into the public domain by Alexander Peslyak. + ;; The tools supporting the library (both rl2tool and wmslite) are + ;; licensed under the GPL v3 (or any subsequent version) terms. + ;; The test/*.svg files are placed in the public domain, except for + ;; test/Car_Yellow.svg which is licensed under the Free Art License 1.3. + (license (list license:gpl2+ + license:gpl3+ + license:lal1.3 + license:lgpl2.1+ + license:mpl1.1 + license:public-domain)))) + (define-public librttopo (package (name "librttopo") @@ -442,9 +469,8 @@ writing GeoTIFF information tags.") ("librttopo" ,librttopo) ("libxml2" ,libxml2) ("minizip" ,minizip) - ("proj.4" ,proj.4) - ("sqlite" ,sqlite) - ("zlib" ,zlib))) + ("proj" ,proj) + ("sqlite" ,sqlite))) (arguments `(#:configure-flags '("--enable-rttopo=yes") @@ -454,7 +480,7 @@ writing GeoTIFF information tags.") (add-after 'unpack 'ignore-broken-tests (lambda _ (substitute* '("test/Makefile.in") - (("\tcheck_sql_stm.*" all) "\tcheck_multithread$(EXEEXT) \\\n") + (("\tcheck_sql_stmt.* (check_sql_.*)" all tiny) (string-append "\t" tiny)) (("(\tch.*) check_v.*ble2.*$" all vt1) (string-append vt1 " \\\n")) (("\tch.* (check_v.*ble4.*)$" all vt4) (string-append "\t" vt4))) #t))))) @@ -686,29 +712,39 @@ development.") (define-public spatialite-gui (package (name "spatialite-gui") - (version "1.7.1") + (version "2.1.0-beta1") (source (origin (method url-fetch) - (uri (string-append "https://www.gaia-gis.it/gaia-sins/spatialite_gui-" - version ".tar.gz")) + (uri (string-append + "https://www.gaia-gis.it/gaia-sins/spatialite-gui-sources/" + "spatialite_gui-" version ".tar.gz")) (sha256 - (base32 - "1r05dz9pyc8vsd2wbqxcsracpfbaamz470rcyp2myfpqwznv376b")))) + (base32 "0cyv4cycl073p9lnnnglcb72qn71g8h9g5zn4gzw7swcy5nxjj5s")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(("freexl" ,freexl) + `(("curl" ,curl) + ("freexl" ,freexl) ("geos" ,geos) - ("libgaiagraphics" ,libgaiagraphics) + ("giflib" ,giflib) ("libjpeg-turbo" ,libjpeg-turbo) + ("librasterlite2" ,librasterlite2) + ("librttopo" ,librttopo) ("libspatialite" ,libspatialite) + ("libwebp" ,libwebp) + ("libxlsxwriter" ,libxlsxwriter) ("libxml2" ,libxml2) - ("proj.4" ,proj.4) + ("lz4" ,lz4) + ("minizip" ,minizip) + ("openjpeg" ,openjpeg) + ("postgresql" ,postgresql) + ("proj" ,proj) ("sqlite" ,sqlite) - ("wxwidgets" ,wxwidgets-2) - ("zlib" ,zlib))) + ("virtualpg" ,virtualpg) + ("wxwidgets" ,wxwidgets) + ("zstd" ,zstd "lib"))) (arguments `(#:phases (modify-phases %standard-phases (add-after 'unpack 'fix-gui @@ -1066,7 +1102,7 @@ map, geocoding with Nominatim, or general analysis.") (define-public tippecanoe (package (name "tippecanoe") - (version "1.31.5") + (version "1.36.0") (source (origin (method git-fetch) @@ -1075,14 +1111,14 @@ map, geocoding with Nominatim, or general analysis.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1m0x931a945sr7axyhcvpwh798m58hx1zxh6ikgf9gsgqhdhmszz")))) + (base32 "0lbmhly4ivnqc6qk1k3sdqvsg6x3nfd8gnjx846bhqj4wag3f88m")))) (build-system gnu-build-system) (arguments `(#:phases (modify-phases %standard-phases (delete 'configure)) #:test-target "test" #:make-flags - (list "CC=gcc" + (list (string-append "CC=" ,(cc-for-target)) (string-append "PREFIX=" (assoc-ref %outputs "out"))))) (inputs `(("perl" ,perl) @@ -1138,7 +1174,7 @@ OpenStreetMap data files.") (build-system gnu-build-system) (native-inputs `(("gnome-common" ,gnome-common) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (inputs `(("cairo" ,cairo) @@ -1748,10 +1784,9 @@ associated attribute file (@file{.dbf}).") ("libspatialite" ,libspatialite) ("libxml2" ,libxml2) ("minizip" ,minizip) - ("proj.4" ,proj.4) + ("proj" ,proj) ("readosm" ,readosm) - ("sqlite" ,sqlite) - ("zlib" ,zlib))) + ("sqlite" ,sqlite))) (synopsis "Collection of command line tools for SpatiaLite") (description "@code{spatialite-tools} is a collection of Command Line Interface (CLI) @@ -1978,7 +2013,7 @@ visualization.") (define-public saga (package (name "saga") - (version "7.6.2") + (version "7.9.0") (source (origin (method url-fetch) @@ -1986,7 +2021,7 @@ visualization.") (version-major version) "/SAGA%20-%20" version "/saga-" version ".tar.gz")) (sha256 - (base32 "09j5magmayq2y620kqa490mfd1kpdp3lng2ifcgbrmssc079ybm0")))) + (base32 "1n051yxxkylly0k9rlkx2ih3j2lf9d4csg00sm7161r7nhjvggd1")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -2001,7 +2036,7 @@ visualization.") ("libtiff" ,libtiff) ("opencv" ,opencv) ("postgresql" ,postgresql) - ("proj.4" ,proj.4) + ("proj" ,proj) ("python" ,python) ("qhull" ,qhull) ("unixodbc" ,unixodbc) @@ -2047,7 +2082,21 @@ growing set of geoscientific methods.") (("sip_dir = cfg.default_sip_dir") (string-append "sip_dir = \"" (assoc-ref inputs "python-pyqt+qscintilla") - "/share/sip\""))) + "/share/sip\"")) + ;; Fix building with python-sip@5. + ;; + ;; The reason for this is that python-sip@5 introduces some + ;; changes such as a new build system 'sip-build' as well as the + ;; use of the path "/lib/pythonX.X/site-packages/*/bindings/" + ;; instead of "/share/sip/" for .sip files. However, we do not + ;; actually use that those yet. QGIS detects SIP5 and assumes we + ;; are, messing up the build. The long term solution is to fully + ;; upgrade SIP, use sip-build and fix all failing packages, but + ;; for now I just want to get the build working. + ((".pyqt_sip_dir...os.path.join.*,") + (string-append "'pyqt_sip_dir': \"" + (assoc-ref inputs "python-pyqt+qscintilla") + "/share/sip" "\","))) (substitute* (list "scripts/prepare_commit.sh" "scripts/qstringfixup.sh" "scripts/release.pl" diff --git a/gnu/packages/gimp.scm b/gnu/packages/gimp.scm index 3670f60b02..7ac064de81 100644 --- a/gnu/packages/gimp.scm +++ b/gnu/packages/gimp.scm @@ -36,7 +36,9 @@ #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages base) + #:use-module (gnu packages build-tools) #:use-module (gnu packages documentation) + #:use-module (gnu packages graphviz) #:use-module (gnu packages pkg-config) #:use-module (gnu packages glib) #:use-module (gnu packages gtk) @@ -166,7 +168,7 @@ of a larger interface.") (define-public babl (package (name "babl") - (version "0.1.78") + (version "0.1.86") (source (origin (method url-fetch) (uri (list (string-append "https://download.gimp.org/pub/babl/" @@ -180,10 +182,11 @@ of a larger interface.") "/babl-" version ".tar.xz"))) (sha256 (base32 - "0fjjfb0pbgimlqi7rk8cqz8pq595b7gw8nrpkxfmixdz6cv4km8p")))) + "1w68h81kqkqnziixrx21qs0gfv2z79651h19sxn226xdb58mjgqb")))) (build-system meson-build-system) (arguments - `(#:configure-flags + `(#:meson ,meson-0.55 + #:configure-flags (list "-Denable-gir=false"))) (native-inputs `(("pkg-config" ,pkg-config))) @@ -205,7 +208,7 @@ provided, as well as a framework to add new color models and data types.") (define-public gegl (package (name "gegl") - (version "0.4.26") + (version "0.4.28") (source (origin (method url-fetch) (uri (list (string-append "https://download.gimp.org/pub/gegl/" @@ -219,10 +222,11 @@ provided, as well as a framework to add new color models and data types.") "/gegl-" version ".tar.xz"))) (sha256 (base32 - "097427icgpgvcx40019b3dm8m84cchz79pixzpz648drs8p1wdqg")))) + "003ri7yv7lm2fi86ama3vlkwnz656yyib4r36hxwlk6mfy2hs48x")))) (build-system meson-build-system) (arguments - `(#:configure-flags + `(#:meson ,meson-0.55 + #:configure-flags (list "-Dintrospection=false") #:phases (modify-phases %standard-phases @@ -266,14 +270,15 @@ buffers.") (package (name "gimp") (version "2.10.22") - (source (origin - (method url-fetch) - (uri (string-append "https://download.gimp.org/pub/gimp/v" - (version-major+minor version) - "/gimp-" version ".tar.bz2")) - (sha256 - (base32 - "1fqqyshakvdarf1jipk2n33ibqr23ni22z3d8srq13bpydblpf1d")))) + (source + (origin + (method url-fetch) + (uri (string-append "https://download.gimp.org/pub/gimp/v" + (version-major+minor version) + "/gimp-" version ".tar.bz2")) + (sha256 + (base32 "1fqqyshakvdarf1jipk2n33ibqr23ni22z3d8srq13bpydblpf1d")) + (patches (search-patches "gimp-make-gegl-introspect-optional.patch")))) (build-system gnu-build-system) (outputs '("out" "doc")) ; 9 MiB of gtk-doc HTML @@ -541,6 +546,29 @@ healing the border, increasing the resolution while adding detail, and transferring the style of an image.") (license license:gpl3+))) +(define gegl-for-glimpse + ;; Remove this when GIMP commit 2cae9b9acf9da98c4c9990819ffbd5aabe23017e + ;; makes it into Glimpse. + (package + (inherit gegl) + (arguments + (substitute-keyword-arguments (package-arguments gegl) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'refer-to-dot + ;; XXX Without ‘dot’ in $PATH, Glimpse would fail to start with an + ;; extremely obtuse ‘GEGL operation missing!’ error. + (lambda _ + (substitute* "gegl/gegl-dot.c" + (("\"dot ") + (format #f "\"~a " (which "dot")))) + (substitute* "operations/common/introspect.c" + (("g_find_program_in_path \\(\"dot\"\\)") + (format #f "g_strdup (\"~a\")" (which "dot")))))))))) + (inputs + `(,@(package-inputs gegl) + ("graphviz" ,graphviz))))) + (define-public glimpse (package (name "glimpse") @@ -620,7 +648,7 @@ transferring the style of an image.") ("poppler-data" ,poppler-data) ("python" ,python-2) ; optional, Python support ("python2-pygtk" ,python2-pygtk) ; optional, Python support - ("gegl" ,gegl))) + ("gegl" ,gegl-for-glimpse))) ; XXX see comment in gegl-for-glimpse (home-page "https://glimpse-editor.github.io/") (synopsis "Glimpse Image Editor") (description "The Glimpse Image Editor is an application for image diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm index c194d269f8..924340746f 100644 --- a/gnu/packages/gl.scm +++ b/gnu/packages/gl.scm @@ -271,7 +271,7 @@ also known as DXTn or DXTC) for Mesa.") ("libxrandr" ,libxrandr) ("libxvmc" ,libxvmc) ,@(match (%current-system) - ((or "x86_64-linux" "i686-linux") + ((or "x86_64-linux" "i686-linux" "powerpc64le-linux") ;; Note: update the 'clang' input of mesa-opencl when bumping this. `(("llvm" ,llvm-11))) (_ @@ -283,7 +283,7 @@ also known as DXTn or DXTC) for Mesa.") ("flex" ,flex) ("gettext" ,gettext-minimal) ,@(match (%current-system) - ((or "x86_64-linux" "i686-linux") + ((or "x86_64-linux" "i686-linux" "powerpc64le-linux") `(("glslang" ,glslang))) (_ `())) @@ -296,8 +296,10 @@ also known as DXTn or DXTC) for Mesa.") `(#:configure-flags '(,@(match (%current-system) ((or "armhf-linux" "aarch64-linux") - ;; TODO: Fix svga driver for aarch64 and armhf. + ;; TODO: Fix svga driver for non-Intel architectures. '("-Dgallium-drivers=etnaviv,freedreno,kmsro,lima,nouveau,panfrost,r300,r600,swrast,tegra,v3d,vc4,virgl")) + ("powerpc64le-linux" + '("-Dgallium-drivers=nouveau,r300,r600,radeonsi,swrast,virgl")) (_ '("-Dgallium-drivers=iris,nouveau,r300,r600,radeonsi,svga,swrast,virgl"))) ;; Enable various optional features. TODO: opencl requires libclc, @@ -314,16 +316,18 @@ also known as DXTn or DXTC) for Mesa.") "-Dgbm=enabled" "-Dshared-glapi=enabled" - ;; Enable Vulkan on i686-linux and x86-64-linux. + ;; Explicitly enable Vulkan on some architectures. ,@(match (%current-system) ((or "i686-linux" "x86_64-linux") '("-Dvulkan-drivers=intel,amd")) + ("powerpc64le-linux" + '("-Dvulkan-drivers=amd")) (_ '("-Dvulkan-drivers=auto"))) - ;; Enable the Vulkan overlay layer on i686-linux and x86-64-linux. + ;; Enable the Vulkan overlay layer on architectures using llvm. ,@(match (%current-system) - ((or "x86_64-linux" "i686-linux") + ((or "x86_64-linux" "i686-linux" "powerpc64le-linux") '("-Dvulkan-overlay-layer=true")) (_ '())) @@ -337,6 +341,9 @@ also known as DXTn or DXTC) for Mesa.") ((or "x86_64-linux" "i686-linux") '("-Ddri-drivers=i915,i965,nouveau,r200,r100" "-Dllvm=enabled")) ; default is x86/x86_64 only + ("powerpc64le-linux" + '("-Ddri-drivers=nouveau,r200,r100" + "-Dllvm=enabled")) (_ '("-Ddri-drivers=nouveau,r200,r100")))) @@ -350,6 +357,15 @@ also known as DXTn or DXTC) for Mesa.") (guix build meson-build-system)) #:phases (modify-phases %standard-phases + ,@(if (string-prefix? "powerpc64le" (or (%current-target-system) + (%current-system))) + ;; Disable some of the llvmpipe tests. + `((add-after 'unpack 'disable-failing-test + (lambda _ + (substitute* "src/gallium/drivers/llvmpipe/lp_test_arit.c" + (("0\\.5, ") "")) + #t))) + '()) ,@(if (string-prefix? "i686" (or (%current-target-system) (%current-system))) ;; Disable new test from Mesa 19 that fails on i686. Upstream @@ -390,7 +406,7 @@ also known as DXTn or DXTC) for Mesa.") (let ((out (assoc-ref outputs "out")) (bin (assoc-ref outputs "bin"))) ,@(match (%current-system) - ((or "i686-linux" "x86_64-linux") + ((or "i686-linux" "x86_64-linux" "powerpc64le-linux") ;; Install the Vulkan overlay control script to a separate ;; output to prevent a reference on Python, saving ~70 MiB ;; on the closure size. @@ -728,7 +744,7 @@ OpenGL graphics API.") (description "libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. It allows multiple drivers from -different vendors to coexist on the same filesystem, and determines which +different vendors to coexist on the same file system, and determines which vendor to dispatch each API call to at runtime. Both GLX and EGL are supported, in any combination with OpenGL and OpenGL ES.") @@ -783,7 +799,7 @@ OpenGL.") (define-public glfw (package (name "glfw") - (version "3.3.3") + (version "3.3.4") (source (origin (method url-fetch) (uri (string-append "https://github.com/glfw/glfw" @@ -791,7 +807,7 @@ OpenGL.") "/glfw-" version ".zip")) (sha256 (base32 - "0xrrahhbs4sn7sgvdk9sgz5zla4sw3ajq6kxpqrx635l8nnqfc3j")))) + "1kcrpl4d6b6h23ib5j9q670d9w3knd07whgbanbmwwhbcqnc9lmv")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; no test target diff --git a/gnu/packages/glib.scm b/gnu/packages/glib.scm index 34d2ba4cf4..b288528c8a 100644 --- a/gnu/packages/glib.scm +++ b/gnu/packages/glib.scm @@ -1159,7 +1159,7 @@ other API remains the same.") `(("bison" ,bison) ("flex" ,flex) ("glib:bin" ,glib "bin") ;; For glib-mkenums - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (home-page "https://gitlab.gnome.org/GNOME/template-glib") diff --git a/gnu/packages/gnome-xyz.scm b/gnu/packages/gnome-xyz.scm index 21192acdd6..af920c501d 100644 --- a/gnu/packages/gnome-xyz.scm +++ b/gnu/packages/gnome-xyz.scm @@ -950,9 +950,9 @@ feature-set for programming Vala effectively.") #:exclude ("README.md" "LICENSE" "Art/" "package.json" "package-lock.json" "Gulpfile.js"))))) (home-page "https://github.com/EliverLara/Nordic") - (synopsis "Dark Gtk3.20+ theme using the Nord color pallete") + (synopsis "Dark Gtk3.20+ theme using the Nord color palette") (description "Nordic is a Gtk3.20+ theme created using the Nord color -pallete.") +palette.") (license license:gpl3)))) (define-public tiramisu diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index f5a8a4d2bd..f393e768af 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -202,7 +202,6 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg) #:use-module (gnu artwork) - #:use-module ((guix build utils) #:select (modify-phases)) #:use-module (guix build-system cargo) #:use-module (guix build-system cmake) #:use-module (guix build-system glib-or-gtk) @@ -216,8 +215,6 @@ #:use-module (guix packages) #:use-module (guix utils) #:use-module (guix gexp) - #:use-module (guix monads) - #:use-module (guix store) #:use-module (ice-9 match) #:use-module (srfi srfi-1)) @@ -264,7 +261,7 @@ ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) ("gsettings-desktop-schemas" ,gsettings-desktop-schemas) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (propagated-inputs `(("glib" ,glib) @@ -367,7 +364,7 @@ features to enable users to create their discs easily and quickly.") (native-inputs `(("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (inputs @@ -416,7 +413,7 @@ services.") (native-inputs `(("docbook-xml" ,docbook-xml-4.1.2) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (propagated-inputs `(("glib" ,glib) @@ -513,7 +510,7 @@ bindings.") ("docbook-xml" ,docbook-xml-4.1.2) ("gettext" ,gettext-minimal) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("libtool" ,libtool) ("pkg-config" ,pkg-config))) @@ -623,7 +620,7 @@ It is written in C using GObject and libsoup.") "/share/gtk-doc/html")))) (native-inputs `(("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (propagated-inputs `(("glib" ,glib))) @@ -693,7 +690,7 @@ of writing test cases for asynchronous interactions.") ("dbus-test-runner" ,dbus-test-runner) ("docbook-xml" ,docbook-xml-4.3) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ;; Would only be required by configure flag "--enable-extended-tests". ;("gtx" ,gtx) ("pkg-config" ,pkg-config) @@ -769,7 +766,7 @@ of known objects without needing a central registrar.") ("docbook-xml" ,docbook-xml-4.3) ("gettext" ,gettext-minimal) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("libtool" ,libtool) ("pkg-config" ,pkg-config) ("vala" ,vala) @@ -1178,7 +1175,7 @@ Library reference documentation.") `(("docbook-xml" ,docbook-xml-4.3) ("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (inputs `(("avahi" ,avahi) @@ -1296,7 +1293,7 @@ It has miners for Facebook, Flickr, Google, ownCloud and SkyDrive.") `(("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (inputs @@ -1327,7 +1324,7 @@ a debugging tool, @command{gssdp-device-sniffer}.") `(("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (inputs @@ -1358,7 +1355,7 @@ for creating UPnP devices and control points, written in C using `(("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("libxml" ,libxml2) ("pkg-config" ,pkg-config) ("vala" ,vala))) @@ -1392,7 +1389,7 @@ given profile, etc. DLNA is a subset of UPnP A/V.") `(("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("libxml" ,libxml2) ("pkg-config" ,pkg-config))) (inputs @@ -1608,7 +1605,7 @@ preview files on the GNOME desktop.") (native-inputs `(("gettext" ,gettext-minimal) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (inputs @@ -1670,7 +1667,7 @@ client devices can handle.") `(("docbook-xml" ,docbook-xml-4.3) ("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("gobject-introspection" ,gobject-introspection) ("pkg-config" ,pkg-config) ("vala" ,vala))) @@ -2417,7 +2414,7 @@ GNOME Desktop.") ("automake" ,automake) ("glib" ,glib "bin") ; for glib-genmarshal, etc. ("gnome-common" ,gnome-common) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("pkg-config" ,pkg-config) ("libtool" ,libtool) @@ -3057,7 +3054,7 @@ configuring CUPS.") ("gobject-introspection" ,gobject-introspection) ;; For the documentation. - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("xsltproc" ,libxslt) ("docbook-xsl" ,docbook-xsl))) (home-page "https://developer-next.gnome.org/libnotify/") @@ -4216,6 +4213,57 @@ engineering.") ;; Dual licensed under GPLv2 or GPLv3 (both without "or later") (list license:gpl2 license:gpl3)))) +(define-public drawing + (package + (name "drawing") + (version "0.6.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/maoschanz/drawing") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1kfgmalakifcvzhzss9zhmqjbdk24zr22c5xwkkahlvfcafp13wn")))) + (build-system meson-build-system) + (arguments + `(#:glib-or-gtk? #t + #:phases + (modify-phases %standard-phases + (add-after 'glib-or-gtk-wrap 'python-and-gi-wrap + (lambda* (#:key outputs #:allow-other-keys) + (let ((prog (string-append (assoc-ref outputs "out") + "/bin/drawing")) + (pylib (string-append (assoc-ref outputs "out") + "/lib/python" + ,(version-major+minor + (package-version python)) + "/site-packages"))) + (wrap-program prog + `("PYTHONPATH" = (,(getenv "PYTHONPATH") ,pylib)) + `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH")))) + #t)))))) + (native-inputs + `(("desktop-file-utils" ,desktop-file-utils) + ("gettext" ,gettext-minimal) + ("glib:bin" ,glib "bin") + ("gobject-introspection" ,gobject-introspection) + ("gtk+:bin" ,gtk+ "bin") + ("pkg-config" ,pkg-config))) + (inputs + `(("gdk-pixbuf" ,gdk-pixbuf+svg) + ("gsettings-desktop-schemas" ,gsettings-desktop-schemas) + ("gtk+" ,gtk+) + ("pango" ,pango) + ("python-pycairo" ,python-pycairo) + ("python-pygobject" ,python-pygobject))) + (home-page "https://maoschanz.github.io/drawing/") + (synopsis "Basic image editor for GNOME") + (description + "Drawing is a basic image editor aiming at the GNOME desktop.") + (license license:gpl3+))) + (define-public gnome-themes-standard (package (name "gnome-themes-standard") @@ -4409,7 +4457,7 @@ editors, IDEs, etc.") "0rnm5c6m3abbm81jsfdas0y80z299ny54gr4syn4bfrms3s4g19l")))) (build-system meson-build-system) (native-inputs - `(("gtk-doc" ,gtk-doc) + `(("gtk-doc" ,gtk-doc/stable) ,@(package-native-inputs vte))) (arguments `(#:configure-flags '("-Ddocs=true"))) @@ -4526,7 +4574,7 @@ and RDP protocols.") ("docbook-xml" ,docbook-xml-4.2) ("docbook-xsl" ,docbook-xsl) ("glib:bin" ,glib "bin") - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (arguments @@ -4634,7 +4682,7 @@ GLib and GObject, and integrates JSON with GLib data types.") `(("glib:bin" ,glib "bin") ; for glib-mkenums, etc. ("gobject-introspection" ,gobject-introspection) ("pkg-config" ,pkg-config) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("which" ,which) ("autoconf" ,autoconf) @@ -4863,7 +4911,7 @@ libxml to ease remote use of the RESTful API.") `(("docbook-xml" ,docbook-xml-4.1.2) ("glib:bin" ,glib "bin") ; for glib-mkenums ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("pkg-config" ,pkg-config) ("python" ,python-wrapper) @@ -5230,7 +5278,7 @@ keyboard shortcuts.") `(("glib:bin" ,glib "bin") ; for glib-compile-resources, etc. ("gettext" ,gettext-minimal) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("vala" ,vala))) (propagated-inputs @@ -5275,7 +5323,7 @@ output devices.") ("gobject-introspection" ,gobject-introspection) ("modem-manager" ,modem-manager) ("libnotify" ,libnotify) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool))) (inputs `(("avahi" ,avahi) @@ -5320,7 +5368,7 @@ permission from user.") ("glibc-locales" ,glibc-locales) ; for tests ("gettext" ,gettext-minimal) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("json-glib" ,json-glib))) (propagated-inputs @@ -5626,7 +5674,7 @@ which are easy to play with the aid of a mouse.") (native-inputs `(("gobject-introspection" ,gobject-introspection) ("glib:bin" ,glib "bin") ; for glib-mkenums - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (inputs `(("glib" ,glib) @@ -6043,7 +6091,7 @@ as possible!") ("intltool" ,intltool) ("pkg-config" ,pkg-config) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("vala" ,vala))) (inputs `(("cyrus-sasl" ,cyrus-sasl) @@ -6477,7 +6525,7 @@ part of udev-extras, then udev, then systemd. It's now a project on its own.") (native-inputs `(("glib:bin" ,glib "bin") ; for glib-genmarshal, etc. ("gettext" ,gettext-minimal) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("xsltproc" ,libxslt))) (inputs @@ -6542,7 +6590,7 @@ DAV, and others.") `(("gobject-introspection" ,gobject-introspection) ("pkg-config" ,pkg-config) ("vala" ,vala) - ("gtk-doc" ,gtk-doc))) + ("gtk-doc" ,gtk-doc/stable))) (propagated-inputs ;; Both of these are required by gusb.pc. `(("glib" ,glib) @@ -6655,9 +6703,11 @@ almost all of them.") ("python-pygobject" ,python-pygobject) ("python-pycairo" ,python-pycairo) ("python-pycrypto" ,python-pycrypto) + ("libhandy" ,libhandy) ("libsecret" ,libsecret) ("gtkspell3" ,gtkspell3) ("gsettings-desktop-schemas" ,gsettings-desktop-schemas) + ("gnome-settings-daemon" ,gnome-settings-daemon) ; desktop-schemas are not enough ("webkitgtk" ,webkitgtk))) (home-page "https://wiki.gnome.org/Apps/Eolie") (synopsis "Web browser for GNOME") @@ -7752,7 +7802,7 @@ users.") `(("glib" ,glib))) (native-inputs `(("glib:bin" ,glib "bin") ; for gdbus-codegen - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("gobject-introspection" ,gobject-introspection) ("docbook-xml" ,docbook-xml) ("docbook-xsl" ,docbook-xsl) @@ -8009,7 +8059,7 @@ Cisco's AnyConnect SSL VPN.") `(("intltool" ,intltool) ("glib:bin" ,glib "bin") ; for glib-compile-resources, etc. ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (propagated-inputs ;; libnm-gtk.pc refers to all these. @@ -9758,7 +9808,7 @@ compiled.") "--enable-introspection"))) (native-inputs `(("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ;; The 0.2.4 ‘release’ tarball isn't bootstrapped. @@ -9830,7 +9880,7 @@ environment, which can notably display keyboard layouts.") `(("pkg-config" ,pkg-config) ("gobject-introspection" ,gobject-introspection) ("glib:bin" ,glib "bin") - ("gtk-doc" ,gtk-doc))) + ("gtk-doc" ,gtk-doc/stable))) (propagated-inputs ;; Referred to in .h files and .pc. `(("gtk+" ,gtk+))) @@ -10415,7 +10465,7 @@ photo-booth-like software, such as Cheese.") ("docbook-xml" ,docbook-xml-4.3) ("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("itstool" ,itstool) ("libxml2" ,libxml2) ("libxslt" ,libxslt) @@ -10847,7 +10897,7 @@ advanced image management tool") (define-public terminator (package (name "terminator") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) @@ -10855,8 +10905,7 @@ advanced image management tool") "releases/download/v" version "/" name "-" version ".tar.gz")) (sha256 - (base32 - "1vap4li2i24l1iz2q4b8wvhj8flamarf18xcmzq5ik2vzcrisbjy")))) + (base32 "0xdgmam7ghnxw6g38a4gjw3kk3rhga8c66lns18k928jlr9fmddw")))) (build-system python-build-system) (native-inputs `(("gettext" ,gettext-minimal) @@ -10954,7 +11003,7 @@ tabs, and it supports drag and drop re-ordering of terminals.") `(("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) ; for g-ir-scanner ("vala" ,vala) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("gettext" ,gettext-minimal) @@ -11489,7 +11538,7 @@ card sheets that you’ll find at most office supply stores.") `(("gettext" ,gettext-minimal) ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("itstool" ,itstool) ("pkg-config" ,pkg-config) @@ -12081,7 +12130,7 @@ developed with the aim of being used with the Librem 5 phone.") ("glib:bin" ,glib "bin") ("gnome-common" ,gnome-common) ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("libtool" ,libtool) ("pkg-config" ,pkg-config) diff --git a/gnu/packages/gnu-doc.scm b/gnu/packages/gnu-doc.scm index b64d8ac454..9fb746ee97 100644 --- a/gnu/packages/gnu-doc.scm +++ b/gnu/packages/gnu-doc.scm @@ -56,7 +56,7 @@ list.") (define-public gnu-standards (package (name "gnu-standards") - (version "2018-02-18") + (version "2020-11-25") (source (origin (method cvs-fetch) @@ -64,11 +64,11 @@ list.") (root-directory ":pserver:anonymous@cvs.savannah.gnu.org:/sources/gnustandards") (module "gnustandards") - (revision "2018-02-18"))) + (revision version))) (sha256 (base32 - "03yh25fpvfn5pnd0d4x7a2wkh01ffk6vbs1vjnzqicqkgc2g33sd")) - (file-name "gnu-standards-src"))) + "1xlwmgcnvp81ipgfir4ckpgl922mbckvxy1x758r0lksq5vrpglj")) + (file-name (string-append name "-" version "-checkout")))) (build-system trivial-build-system) (native-inputs `(("gzip" ,gzip) ("source" ,source) diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm index b9d2de29bc..e7c9b90931 100644 --- a/gnu/packages/gnuzilla.scm +++ b/gnu/packages/gnuzilla.scm @@ -1305,11 +1305,11 @@ standards of the IceCat project.") (cpe-version . ,(first (string-split version #\-))))))) ;; Update this together with icecat! -(define %icedove-build-id "20210223000000") ;must be of the form YYYYMMDDhhmmss +(define %icedove-build-id "20210323000000") ;must be of the form YYYYMMDDhhmmss (define-public icedove (package (name "icedove") - (version "78.8.0") + (version "78.9.0") (source icecat-source) (properties `((cpe-name . "thunderbird_esr"))) @@ -1589,7 +1589,7 @@ standards of the IceCat project.") ;; in the Thunderbird release tarball. We don't use the release ;; tarball because it duplicates the Icecat sources and only adds the ;; "comm" directory, which is provided by this repository. - ,(let ((changeset "d801a94f25867ca5f2f3488c4700532351987999")) + ,(let ((changeset "1a5cd2aa11de609116f258b413afcf113ed72f3a")) (origin (method hg-fetch) (uri (hg-reference @@ -1598,7 +1598,7 @@ standards of the IceCat project.") (file-name (string-append "thunderbird-" version "-checkout")) (sha256 (base32 - "19h1s9qcxzcvbd1m07xajk5lhpikj53k5fp3nwvl38xj7a3s0gxw"))))) + "0qgz9qj8gbn2ccmhvk3259ahs9p435ipvkzsysn3xj8a6klbz02w"))))) ("autoconf" ,autoconf-2.13) ("cargo" ,rust "cargo") ("clang" ,clang) diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm index d9988cd7ad..6502740220 100644 --- a/gnu/packages/golang.scm +++ b/gnu/packages/golang.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com> ;;; Copyright © 2016 Andy Wingo <wingo@igalia.com> ;;; Copyright © 2016, 2019 Ludovic Courtès <ludo@gnu.org> @@ -2099,7 +2099,7 @@ application's http.Handlers.") (define-public go-github-com-sirupsen-logrus (package (name "go-github-com-sirupsen-logrus") - (version "1.0.5") + (version "1.8.1") (source (origin (method git-fetch) @@ -2109,17 +2109,16 @@ application's http.Handlers.") (file-name (git-file-name name version)) (sha256 (base32 - "0g5z7al7kky11ai2dhac6gkp3b5pxsvx72yj3xg4wg3265gbn7yz")))) + "0rvqzic2zz7fpxyizmqxwmhv1m52ii9bgxnqa6km8wsa0l08wh42")))) (build-system go-build-system) (propagated-inputs - `(("go-golang-org-x-crypto" - ,go-golang-org-x-crypto) - ("go-github-com-stretchr-testify" - ,go-github-com-stretchr-testify) + `(("go-github-com-davecgh-go-spew" ,go-github-com-davecgh-go-spew) + ("go-github-com-pmezard-go-difflib" ,go-github-com-pmezard-go-difflib) + ("go-github-com-stretchr-testify" ,go-github-com-stretchr-testify) + ("go-golang-org-x-crypto" ,go-golang-org-x-crypto) ("go-golang-org-x-sys" ,go-golang-org-x-sys))) (arguments - '(#:tests? #f ;FIXME missing dependencies - #:import-path "github.com/sirupsen/logrus")) + '(#:import-path "github.com/sirupsen/logrus")) (home-page "https://github.com/sirupsen/logrus") (synopsis "Structured, pluggable logging for Go") (description "Logrus is a structured logger for Go, completely API @@ -3966,7 +3965,7 @@ without requiring a real database connection.") (home-page "https://github.com/go-sql-driver/mysql") (synopsis "MySQL driver for golang") (description - "This is a pure Go implementaton of the MySQL API, compatible with + "This is a pure Go implementation of the MySQL API, compatible with golang's database/sql package.") (license license:mpl2.0))) @@ -5505,7 +5504,7 @@ the parse trees produced by the html package.") (build-system go-build-system) (arguments `(#:import-path "github.com/PuerkitoBio/goquery")) - (native-inputs + (propagated-inputs `(("go-github-com-andybalholm-cascadia" ,go-github-com-andybalholm-cascadia) ("go-golang-org-x-net" ,go-golang-org-x-net))) (home-page "https://github.com/PuerkitoBio/goquery") @@ -5828,7 +5827,7 @@ which produce colorized output using github.com/fatih/color.") (synopsis "Write handsome command-line tools with glamour") (description "@code{glamour} lets you render markdown documents and templates on ANSI compatible terminals. You can create your own stylesheet or -use one of our glamourous default themes.") +use one of our glamorous default themes.") (license license:expat))) (define-public go-github-com-coreos-go-semver @@ -6912,7 +6911,7 @@ atomic access.") (propagated-inputs `(("go-go-uber-org-atomic" ,go-go-uber-org-atomic))) (home-page "https://go.uber.org/multierr") - (synopsis "Error combination fo Go") + (synopsis "Error combination for Go") (description "@code{multierr} allows combining one or more Go errors together.") (license license:expat))) diff --git a/gnu/packages/gpodder.scm b/gnu/packages/gpodder.scm index cb7cc176c3..d5c89229f6 100644 --- a/gnu/packages/gpodder.scm +++ b/gnu/packages/gpodder.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2019, 2020 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2019, 2020, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. @@ -25,6 +25,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system python) #:use-module (gnu packages) + #:use-module (gnu packages base) #:use-module (gnu packages check) #:use-module (gnu packages freedesktop) #:use-module (gnu packages glib) @@ -38,7 +39,7 @@ (define-public gpodder (package (name "gpodder") - (version "3.10.17") + (version "3.10.18") (source (origin (method git-fetch) @@ -46,18 +47,23 @@ (url "https://github.com/gpodder/gpodder") (commit version))) (sha256 - (base32 "0wrk8d4q6ricbcjzlhk10vrk1qg9hi323kgyyd0c8nmh7a82h8pd")) + (base32 "1d73q46sqandzbn74nfw9bzzah99z91wsxq2hcivwdgnsv2g2d8y")) (file-name (git-file-name name version)) (patches (search-patches "gpodder-disable-updater.patch")))) (build-system python-build-system) (native-inputs `(("intltool" ,intltool) ("python-coverage" ,python-coverage) - ("python-minimock" ,python-minimock))) + ("python-minimock" ,python-minimock) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-httpserver" ,python-pytest-httpserver) + ("which" ,which))) (inputs `(("gtk+" ,gtk+) ("python-pygobject" ,python-pygobject) ("python-pycairo" ,python-pycairo) + ("python-requests" ,python-requests) ("python-dbus" ,python-dbus) ("python-html5lib" ,python-html5lib) ("python-mygpoclient" ,python-mygpoclient) diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm index 4a301d387a..f9f19cc28d 100644 --- a/gnu/packages/graphics.scm +++ b/gnu/packages/graphics.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2015 Tomáš Čech <sleep_walker@gnu.org> ;;; Copyright © 2016, 2019 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017, 2019 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2018, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2017 Manolis Fragkiskos Ragkousis <manolis837@gmail.com> ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com> @@ -25,6 +25,7 @@ ;;; Copyright © 2020 Gabriel Arazas <foo.dogsquared@gmail.com> ;;; Copyright © 2021 Antoine Côté <antoine.cote@posteo.net> ;;; Copyright © 2021 Andy Tai <atai@atai.org> +;;; Copyright © 2021 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; ;;; This file is part of GNU Guix. ;;; @@ -463,6 +464,42 @@ Embree is meant to increase performance of photo-realistic rendering applications.") (license license:asl2.0))) +(define-public openvdb + (package + (name "openvdb") + (version "8.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/AcademySoftwareFoundation/openvdb/") + (commit (string-append "v" version)) + (recursive? #t))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0qzx6l5c183k6j9zki31gg9aixf5s1j46wdi7wr1h3bz7k53syg9")))) + (build-system cmake-build-system) + (arguments + `(#:configure-flags + (list (string-append "-DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath=" + (assoc-ref %outputs "out") "/lib")))) + (inputs + `(("boost" ,boost) + ("c-blosc" ,c-blosc) + ("ilmbase" ,ilmbase) + ("tbb" ,tbb) + ("zlib" ,zlib))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://www.openvdb.org/") + (synopsis "Sparse volume data structure and tools") + (description "OpenVDB is a C++ library comprising a hierarchical data +structure and a large suite of tools for the efficient storage and +manipulation of sparse volumetric data discretized on three-dimensional grids. +It was developed by DreamWorks Animation for use in volumetric applications +typically encountered in feature film production.") + (license license:mpl2.0))) + (define-public blender (package (name "blender") @@ -753,7 +790,7 @@ many more.") (define-public ilmbase (package (name "ilmbase") - (version "2.5.2") + (version "2.5.5") (source (origin (method git-fetch) (uri (git-reference @@ -762,7 +799,7 @@ many more.") (file-name (git-file-name "ilmbase" version)) (sha256 (base32 - "1vf8bqld2bpcdi99jbr043y6vp01cp3fvbiasrn66xn91mf6imbn")) + "0mjzb3fd8b9pcqmrgy5cdsmvqd70hmlvjnfypi66v59h3fhrmgd8")) (patches (search-patches "ilmbase-fix-tests.patch")))) (build-system cmake-build-system) (arguments diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index b5c4774d5c..eb3fd1d583 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -9,6 +9,7 @@ ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Pjotr Prins <pjotr.guix@thebird.nl> +;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -48,7 +49,9 @@ #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-check) #:use-module (gnu packages python-xyz) + #:use-module (gnu packages sphinx) #:use-module (gnu packages swig) #:use-module (gnu packages tcl) #:use-module (gnu packages tex) @@ -242,6 +245,55 @@ structure and layout algorithms.") (define-public python2-pygraphviz (package-with-python2 python-pygraphviz)) +(define-public python-uqbar + (package + (name "python-uqbar") + (version "0.5.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/josiah-wolf-oberholtzer/uqbar") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0413nyhd8z8v3lvsgaghhafnyxg90fi1q80j1kbl21gpmpnc9a7n")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch + (lambda _ + (substitute* "setup.py" + ;; Latest versions of sphink-rtd-theme require npm to build. + (("sphinx-rtd-theme >= 0.4.0") "sphinx-rtd-theme >= 0.2.4") + (("black == 19.10b0") "black >= 19.10b0")) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest" "tests")) + #t))))) + (native-inputs + `(("graphviz" ,graphviz) + ("python-flake8" ,python-flake8) + ("python-isort" ,python-isort) + ("python-mypy" ,python-mypy) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (propagated-inputs + `(("python-black" ,python-black) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) + ("python-unidecode" ,python-unidecode))) + (home-page "https://github.com/josiah-wolf-oberholtzer/uqbar") + (synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX") + (description + "This package contains tools for building documentation with Sphinx, +Graphviz and LaTeX.") + (license license:expat))) + (define-public gts (package (name "gts") diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index 1c7ba98a86..6a4e14167d 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -384,7 +384,7 @@ http://www.tux.org/~ricdude/overview.html") "if (error) return 77;")) #t))))) (native-inputs - `(("gtk-doc" ,gtk-doc))) + `(("gtk-doc" ,gtk-doc/stable))) (home-page "https://gstreamer.freedesktop.org/modules/orc.html") (synopsis "Oil runtime compiler") (description diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm index 517264d88b..9f3aea4aca 100644 --- a/gnu/packages/gtk.scm +++ b/gnu/packages/gtk.scm @@ -8,7 +8,7 @@ ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2015 Andy Wingo <wingo@igalia.com> ;;; Copyright © 2015 David Hashe <david.hashe@dhashe.com> -;;; Coypright © 2015, 2016, 2017, 2018, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Fabian Harfert <fhmgufs@web.de> ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net> @@ -48,6 +48,7 @@ #:use-module (guix packages) #:use-module (guix download) #:use-module (guix git-download) + #:use-module ((guix build utils) #:select (alist-replace)) #:use-module (guix build-system glib-or-gtk) #:use-module (guix build-system gnu) #:use-module (guix build-system meson) @@ -2079,6 +2080,17 @@ with some extra work.") ;; Others. license:gpl2+)))) +;; This is a variant of the 'gtk-doc' package that is not updated often. It +;; is intended to be used as a native-input at build-time only. This allows +;; the main 'gtk-doc', 'dblatex' and 'imagemagick' packages to be freely +;; updated on the 'master' branch without triggering an excessive number of +;; rebuilds. +(define-public gtk-doc/stable + (hidden-package + (package/inherit gtk-doc + (inputs (alist-replace "dblatex" `(,dblatex/stable) + (package-inputs gtk-doc)))))) + (define-public gtk-engines (package (name "gtk-engines") @@ -2485,7 +2497,7 @@ popovers.") `(("gettext" ,gettext-minimal) ("glib-bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config) ("python" ,python))) (inputs diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index b1ae3143da..c881c855a1 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -28,7 +28,7 @@ ;;; Copyright © 2020 Jack Hill <jackhill@jackhill.us> ;;; Copyright © 2020 Julien Lepiler <julien@lepiller.eu> ;;; Copyright © 2020 Marius Bakke <marius@gnu.org> -;;; Copyright © 2020 Masaya Tojo <masaya@tojo.tokyo> +;;; Copyright © 2020, 2021 Masaya Tojo <masaya@tojo.tokyo> ;;; Copyright © 2020 Jesse Gibbons <jgibbons2357@gmail.com> ;;; Copyright © 2020 Mike Rosset <mike.rosset@gmail.com> ;;; Copyright © 2020 Leo Prikler <leo.prikler@student.tugraz.at> @@ -91,6 +91,7 @@ #:use-module (gnu packages networking) #:use-module (gnu packages noweb) #:use-module (gnu packages nss) + #:use-module (gnu packages package-management) #:use-module (gnu packages password-utils) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) @@ -1313,44 +1314,37 @@ Scheme by using Guile’s foreign function interface.") (deprecated-package "guile3.0-newt" guile-newt)) (define-public guile-mastodon - (package - (name "guile-mastodon") - (version "0.0.1") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://framagit.org/prouby/guile-mastodon.git") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1vblf3d1bbwna3l09p2ap5y8ycvl549bz6whgk78imyfmn28ygry")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Allow builds with Guile 3.0. - (substitute* "configure.ac" - (("^PKG_CHECK.*") "") - (("^GUILE_PKG.*") - "GUILE_PKG([3.0 2.2])\n")) - #t)))) - (build-system gnu-build-system) - (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ("emacs" ,emacs-minimal) - ("pkg-config" ,pkg-config) - ("texinfo" ,texinfo))) - (inputs - `(("guile" ,guile-3.0) - ("gnutls" ,gnutls) - ("guile-json" ,guile-json-4))) - (home-page "https://framagit.org/prouby/guile-mastodon") - (synopsis "Guile Mastodon REST API module") - (description "This package provides Guile modules to access the + (let ((commit "74b75bcf547df92acee1e0466ecd7ec07f775392") + (revision "1")) + (package + (name "guile-mastodon") + (version (git-version "0.0.1" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://framagit.org/prouby/guile-mastodon.git") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1wx5h6wa9c0na8mrnr2nv1nzjvq68zyrly8yyp11dsskhaw4y33h")))) + (build-system gnu-build-system) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("emacs" ,emacs-minimal) + ("pkg-config" ,pkg-config) + ("texinfo" ,texinfo))) + (inputs + `(("guile" ,guile-3.0) + ("gnutls" ,gnutls) + ("guile-json" ,guile-json-4))) + (home-page "https://framagit.org/prouby/guile-mastodon") + (synopsis "Guile Mastodon REST API module") + (description "This package provides Guile modules to access the @uref{https://docs.joinmastodon.org/api/, REST API of Mastodon}, a federated microblogging service.") - (license license:gpl3+))) + (license license:gpl3+)))) (define-public guile-parted (package @@ -1752,6 +1746,35 @@ The library is shipped with documentation in Info format and usage examples.") (define-public guile3.0-ics (deprecated-package "guile3.0-ics" guile-ics)) +(define-public guile-imanifest + (let ((commit "ccd5a2111b008d778106f5595a3a585954d95d0") + (revision "0")) + (package + (name "guile-imanifest") + (version (git-version "0.0.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.sr.ht/~brown121407/guile-imanifest") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0i5qllcrhdjhspyj7j9h4dc9y37d3cfbpackmybm3030qgfxqirf")))) + (build-system guile-build-system) + (native-inputs + `(("guile" ,guile-3.0))) + (propagated-inputs + `(("guile-readline" ,guile-readline) + ("guile-colorized" ,guile-colorized) + ("guix" ,guix))) + (home-page "https://sr.ht/~brown121407/guile-imanifest") + (synopsis "Interactive Guix manifests") + (description "This package provides functions to generate Guix manifests +interactively. It works by scanning an alist of package categories, to ask the +user which package sets would they like to install from it.") + (license license:gpl3+)))) + (define-public guile-wisp (package (name "guile-wisp") @@ -2362,22 +2385,14 @@ inspired by the SCSH regular expression system.") (define-public haunt (package (name "haunt") - (version "0.2.4") + (version "0.2.5") (source (origin (method url-fetch) (uri (string-append "https://files.dthompson.us/haunt/haunt-" version ".tar.gz")) (sha256 (base32 - "056z4znikk83nr5mr0x2ac3iinqbywa2bvb37mhr566a1q50isfc")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Allow builds with Guile 3.0. - (substitute* "configure" - (("2\\.2 2\\.0") - "3.0 2.2 2.0")) - #t)))) + "1gy45l6m91b3wpdbpd9bpisp00zl8610zs0a2nwmbjlpd2cbf90k")))) (build-system gnu-build-system) (arguments `(#:modules ((ice-9 match) (ice-9 ftw) @@ -2626,8 +2641,8 @@ format is also supported.") (deprecated-package "guile3.0-mcron" mcron)) (define-public guile-picture-language - (let ((commit "291a746a1d3b4784d38b05239bdd7b8e796ce761") - (revision "4")) + (let ((commit "a1322bf11945465241ca5b742a70893f24156d12") + (revision "5")) (package (name "guile-picture-language") (version (git-version "0.0.1" revision commit)) @@ -2639,7 +2654,7 @@ format is also supported.") (file-name (git-file-name name version)) (sha256 (base32 - "0rnhf13ds92sbdicshy4sy4kl2kc431fy9vzm1divw974p7v57sd")))) + "03i528z92ainccgm28shg4haxiav5x4cyhyi5dggq1rm027vbm99")))) (build-system gnu-build-system) (inputs `(("guile" ,guile-3.0))) @@ -3496,7 +3511,7 @@ feature-set, fully programmable in Guile Scheme.") texlive-fonts-iwona))) ("pkg-config" ,pkg-config))) (propagated-inputs - `(("guile-lib" ,guile-lib))) + `(("guile-lib" ,guile2.2-lib))) (home-page "https://www.gnu.org/software/guile-cv/") (synopsis "Computer vision library for Guile") (description "Guile-CV is a Computer Vision functional programming library @@ -4426,7 +4441,7 @@ tools.") (synopsis "Guile implementation of the Encoding for Robust Immutable Storage (ERIS)") (description "Guile-ERIS is the reference implementation of the Encoding for Robust -Immutable Storage (ERIS). ERIS allows arbirtary content to be encoded into +Immutable Storage (ERIS). ERIS allows arbitrary content to be encoded into uniformly sized, encrypted blocks that can be reassembled using a short read-capability.") (home-page "https://inqlab.net/git/eris.git") diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm index f63322794d..fdda6cd733 100644 --- a/gnu/packages/guile.scm +++ b/gnu/packages/guile.scm @@ -770,16 +770,16 @@ type system, elevating types to first-class status.") (define-public guile-git (package (name "guile-git") - (version "0.4.0") + (version "0.5.0") (home-page "https://gitlab.com/guile-git/guile-git.git") (source (origin (method url-fetch) (uri (string-append "https://gitlab.com/guile-git/guile-git/uploads/" - "2600bb0dfdfb00bfbe46811dccad51d8/guile-git-" + "30be542d90619ca844dd3a3ed2e13808/guile-git-" version ".tar.gz")) (sha256 (base32 - "1kxyg9x2aa1pg69cl48wysq0pbxvwfahy1xpl5ab6p8babhf7kic")))) + "1j39c1cq9cbwir90mpnbdijpbwh7wkxampgl2r177bv8bfw6y203")))) (build-system gnu-build-system) (arguments `(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings diff --git a/gnu/packages/hardware.scm b/gnu/packages/hardware.scm index 10672f52f3..d5941b6c0f 100644 --- a/gnu/packages/hardware.scm +++ b/gnu/packages/hardware.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2021 Evgeny Pisemsky <evgeny@pisemsky.com> @@ -61,14 +61,14 @@ (define-public ddcutil (package (name "ddcutil") - (version "0.9.9") + (version "1.1.0") (source (origin (method url-fetch) (uri (string-append "https://www.ddcutil.com/tarballs/" "ddcutil-" version ".tar.gz")) (sha256 - (base32 "0anyxy53k2613hq9glaad16llqlv6iim5p8gz0rs5pnpp8p00dg1")))) + (base32 "19kkwb9ijzn6ya3mvjanggh1c96fcc0lkbk7xnyi2qp6wsr4nhxp")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) diff --git a/gnu/packages/haskell-apps.scm b/gnu/packages/haskell-apps.scm index d7d5a0223a..8128c5425e 100644 --- a/gnu/packages/haskell-apps.scm +++ b/gnu/packages/haskell-apps.scm @@ -342,14 +342,14 @@ to @code{cabal repl}).") (define-public git-annex (package (name "git-annex") - (version "8.20210310") + (version "8.20210330") (source (origin (method url-fetch) (uri (string-append "https://hackage.haskell.org/package/" "git-annex/git-annex-" version ".tar.gz")) (sha256 - (base32 "1a4pr9z2li3wns1xycz7735nzzsv3cs8milr0q74k5qcqk5f22nx")))) + (base32 "07dhxlmnj48drgndcplafc7xhby0w3rks68fz9wsppxan929240p")))) (build-system haskell-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/haskell-web.scm b/gnu/packages/haskell-web.scm index 0be9890d23..a250bb4262 100644 --- a/gnu/packages/haskell-web.scm +++ b/gnu/packages/haskell-web.scm @@ -2266,7 +2266,7 @@ server no longer receives pings, it shuts down.") ("ghc-websockets" ,ghc-websockets))) (home-page "https://github.com/larskuhtz/wai-cors") (synopsis "Cross-Origin Resource Sharing (CORS) for WAI") - (description "This package provides an implemenation of Cross-Origin + (description "This package provides an implementation of Cross-Origin Resource Sharing (CORS) for the Web Application Framework (WAI) that aims to be compliant with @url{https://www.w3.org/TR/cors}.") (license license:expat))) diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm index 26f6faea8c..ed21b26812 100644 --- a/gnu/packages/image-processing.scm +++ b/gnu/packages/image-processing.scm @@ -1,10 +1,10 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 John Darrington <jmd@gnu.org> ;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2018 Lprndn <guix@lprndn.info> ;;; Copyright © 2019, 2021 Efraim Flashner <efraim@flashner.co.il> @@ -14,6 +14,8 @@ ;;; Copyright © 2020 Brendan Tildesley <mail@brendan.scot> ;;; Copyright © 2021 Oleh Malyi <astroclubzp@gmail.com> ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> +;;; Copyright © 2021 Andy Tai <atai@atai.org> +;;; Copyright © 2021 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; ;;; This file is part of GNU Guix. ;;; @@ -246,7 +248,7 @@ many popular formats.") (define-public vtk (package (name "vtk") - (version "8.2.0") + (version "9.0.1") (source (origin (method url-fetch) (uri (string-append "https://vtk.org/files/release/" @@ -254,7 +256,7 @@ many popular formats.") "/VTK-" version ".tar.gz")) (sha256 (base32 - "1fspgp8k0myr6p2a6wkc21ldcswb4bvmb484m12mxgk1a9vxrhrl")) + "1ir2lq9i45ls374lcmjzw0nrm5l5hnm1w47lg8g8d0n2j7hsaf8v")) (patches (search-patches "vtk-fix-freetypetools-build-failure.patch")) (modules '((guix build utils))) @@ -264,35 +266,47 @@ many popular formats.") (lambda (dir) (delete-file-recursively (string-append "ThirdParty/" dir "/vtk" dir))) - ;; ogg, pugixml depended upon unconditionally + ;; pugixml depended upon unconditionally '("doubleconversion" "eigen" "expat" "freetype" "gl2ps" "glew" "hdf5" "jpeg" "jsoncpp" "libproj" "libxml2" "lz4" - "netcdf" "png" "sqlite" "theora" "tiff" "zlib")) + "netcdf" "ogg" "png" "sqlite" "theora" "tiff" "zlib")) #t)))) + (properties `((release-monitoring-url . "https://vtk.org/download/"))) (build-system cmake-build-system) (arguments '(#:build-type "Release" ;Build without '-g' to save space. #:configure-flags '(;"-DBUILD_TESTING:BOOL=TRUE" - ;"-DVTK_MODULE_USE_EXTERNAL_vtkogg:BOOL=TRUE" ; not honored - "-DVTK_USE_SYSTEM_DOUBLECONVERSION:BOOL=TRUE" - "-DVTK_USE_SYSTEM_EIGEN:BOOL=TRUE" - "-DVTK_USE_SYSTEM_EXPAT:BOOL=TRUE" - "-DVTK_USE_SYSTEM_FREETYPE:BOOL=TRUE" - "-DVTK_USE_SYSTEM_GL2PS:BOOL=TRUE" - "-DVTK_USE_SYSTEM_GLEW:BOOL=TRUE" - "-DVTK_USE_SYSTEM_HDF5:BOOL=TRUE" - "-DVTK_USE_SYSTEM_JPEG:BOOL=TRUE" - "-DVTK_USE_SYSTEM_JSONCPP:BOOL=TRUE" - "-DVTK_USE_SYSTEM_LIBPROJ:BOOL=TRUE" - "-DVTK_USE_SYSTEM_LIBXML2:BOOL=TRUE" - "-DVTK_USE_SYSTEM_LZ4:BOOL=TRUE" - "-DVTK_USE_SYSTEM_NETCDF:BOOL=TRUE" - "-DVTK_USE_SYSTEM_PNG:BOOL=TRUE" - ;"-DVTK_USE_SYSTEM_PUGIXML:BOOL=TRUE" ; breaks IO/CityGML - "-DVTK_USE_SYSTEM_SQLITE:BOOL=TRUE" - "-DVTK_USE_SYSTEM_THEORA:BOOL=TRUE" - "-DVTK_USE_SYSTEM_TIFF:BOOL=TRUE" - "-DVTK_USE_SYSTEM_ZLIB:BOOL=TRUE") + ; ; not honored + "-DVTK_USE_EXTERNAL=OFF" ;; default + "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" + ;"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON" ; breaks IO/CityGML + "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" + "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON" + ) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-sources + (lambda _ + (substitute* "Common/Core/vtkFloatingPointExceptions.cxx" + (("<fenv.h>") "<cfenv>")) + (substitute* "Common/Core/CMakeLists.txt" + (("fenv.h") "cfenv"))))) #:tests? #f)) ;XXX: test data not included (inputs `(("double-conversion" ,double-conversion) @@ -305,7 +319,6 @@ many popular formats.") ("hdf5" ,hdf5) ("jpeg" ,libjpeg-turbo) ("jsoncpp" ,jsoncpp) - ;("libogg" ,libogg) ("libtheora" ,libtheora) ("libX11" ,libx11) ("libxml2" ,libxml2) @@ -320,6 +333,10 @@ many popular formats.") ("tiff" ,libtiff) ("xorgproto" ,xorgproto) ("zlib" ,zlib))) + (propagated-inputs + ;; VTK's 'VTK-vtk-module-find-packages.cmake' calls + ;; 'find_package(THEORA)', which in turns looks for libogg. + `(("libogg" ,libogg))) (home-page "https://vtk.org/") (synopsis "Libraries for 3D computer graphics") (description @@ -333,6 +350,22 @@ a suite of 3D interaction widgets, supports parallel processing, and integrates with various databases on GUI toolkits such as Qt and Tk.") (license license:bsd-3))) +;; freecad needs an old version of VTK, because VTK's API changed from 8 to 9 +(define-public vtk-8 + (package (inherit vtk) + (version "8.2.0") + (source (origin + (method url-fetch) + (uri (string-append "https://vtk.org/files/release/" + (version-major+minor version) + "/VTK-" version ".tar.gz")) + (sha256 + (base32 + "1fspgp8k0myr6p2a6wkc21ldcswb4bvmb484m12mxgk1a9vxrhrl")))) + (inputs + `(("jsoncpp" ,jsoncpp-for-tensorflow) + ,@(alist-delete "jsoncpp" (package-inputs vtk)))))) + ;; itksnap needs an older variant of VTK. (define-public vtk-6 (package (inherit vtk) @@ -556,7 +589,7 @@ vision algorithms. It can be used to do things like: (define-public vips (package (name "vips") - (version "8.10.5") + (version "8.10.6") (source (origin (method url-fetch) @@ -564,7 +597,7 @@ vision algorithms. It can be used to do things like: "https://github.com/libvips/libvips/releases/download/v" version "/vips-" version ".tar.gz")) (sha256 - (base32 "1n6gw7cw66rfn1wdb92ydpkv7gfmjiinsg6d6gqxpdja6gsz5vm4")))) + (base32 "0vjsh3i0861f6h9as3bch956cidz824zz499pvhjs3lfjn6hhs14")))) (build-system gnu-build-system) (native-inputs `(("gobject-introspection" ,gobject-introspection) @@ -606,14 +639,14 @@ due to its architecture which automatically parallelises the image workflows.") (define-public gmic (package (name "gmic") - (version "2.9.6") + (version "2.9.7") (source (origin (method url-fetch) (uri (string-append "https://gmic.eu/files/source/gmic_" version ".tar.gz")) (sha256 - (base32 "06n1dcskky7aqg3a0cp7biwz8agc4xqvr8091l2wsvgib98yhbyj")))) + (base32 "05kzaplsl5qvxs7v6g73q0lq8dii8g6v77ap609188m7gr43f9cl")))) (build-system cmake-build-system) (arguments `(#:tests? #f ;there are no tests diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm index a3562f2e13..4f0ffcbcc6 100644 --- a/gnu/packages/imagemagick.scm +++ b/gnu/packages/imagemagick.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016 Leo Famulari <leo@famulari.name> -;;; Copyright © 2016 Mark H Weaver <mhw@netris.org> +;;; Copyright © 2016, 2021 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> @@ -42,130 +42,125 @@ #:use-module (gnu packages image) #:use-module (gnu packages pkg-config) #:use-module (gnu packages xml) - #:use-module (gnu packages xorg)) + #:use-module (gnu packages xorg) + #:use-module (srfi srfi-1)) -(define-public imagemagick - (package - (name "imagemagick") - ;; The 7 release series has an incompatible API, while the 6 series is still - ;; maintained. Don't update to 7 until we've made sure that the ImageMagick - ;; users are ready for the 7-series API. - (version "6.9.11-48") - (replacement imagemagick/fixed) - (source (origin - (method url-fetch) - (uri (string-append "mirror://imagemagick/ImageMagick-" - version ".tar.xz")) - (sha256 - (base32 - "0m8nkmywkqwyrr01q7aiakj6mi4rb2psjgzv8n0x82x3s1rpfyql")))) - (build-system gnu-build-system) - (arguments - `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch" +;; This is a variant of the 'imagemagick' package that is not updated often. +;; It is intended to be used as a native-input at build-time only, e.g. by +;; 'gtk-doc' (via 'dblatex') for generating package documentation. This +;; allows the main 'imagemagick' package to be freely updated on the 'master' +;; branch without triggering an excessive number of rebuilds. +;; +;; Normally the grafts mechanism would be used, but there are often +;; difficulties grafting imagemagick, e.g. because upstream changes the ABI +;; between micro version updates. Also, the overwhelming majority of +;; dependencies on imagemagick are via 'gtk-doc' in 'native-inputs', where +;; grafting is ineffective. See: +;; <https://lists.gnu.org/archive/html/guix-devel/2021-03/msg00381.html>. +(define-public imagemagick/stable + (hidden-package + (package + (name "imagemagick") + ;; The 7 release series has an incompatible API, while the 6 series is still + ;; maintained. Don't update to 7 until we've made sure that the ImageMagick + ;; users are ready for the 7-series API. + (version "6.9.11-48") + (source (origin + (method url-fetch) + (uri (string-append "mirror://imagemagick/ImageMagick-" + version ".tar.xz")) + (sha256 + (base32 + "0m8nkmywkqwyrr01q7aiakj6mi4rb2psjgzv8n0x82x3s1rpfyql")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch" - ;; Do not embed the build date in binaries. - "--enable-reproducible-build") + ;; Do not embed the build date in binaries. + "--enable-reproducible-build") - ;; FIXME: The test suite succeeded before version 6.9.6-2. - ;; Try enabling it again with newer releases. - #:tests? #f - #:phases (modify-phases %standard-phases - (add-before - 'build 'pre-build - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "Makefile" - ;; Clear the `LIBRARY_PATH' setting, which otherwise - ;; interferes with our own use. - (("^LIBRARY_PATH[[:blank:]]*=.*$") - "") + ;; FIXME: The test suite succeeded before version 6.9.6-2. + ;; Try enabling it again with newer releases. + #:tests? #f + #:phases (modify-phases %standard-phases + (add-before + 'build 'pre-build + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "Makefile" + ;; Clear the `LIBRARY_PATH' setting, which otherwise + ;; interferes with our own use. + (("^LIBRARY_PATH[[:blank:]]*=.*$") + "") - ;; Since the Makefile overrides $docdir, modify it to - ;; refer to what we want. - (("^DOCUMENTATION_PATH[[:blank:]]*=.*$") - (let ((doc (assoc-ref outputs "doc"))) - (string-append "DOCUMENTATION_PATH = " - doc "/share/doc/" - ,name "-" - ,(package-version this-package) "\n")))) - #t)) - (add-before - 'configure 'strip-configure-xml - (lambda _ - (substitute* "config/configure.xml.in" - ;; Do not record 'configure' arguments in the - ;; configure.xml file that gets installed: That would - ;; include --docdir, and thus retain a reference to the - ;; 'doc' output. - (("@CONFIGURE_ARGS@") - "not recorded")) - #t))))) - ;; TODO: Add Jasper etc. - (inputs `(("fftw" ,fftw) - ("graphviz" ,graphviz) - ("ghostscript" ,ghostscript) - ("lcms" ,lcms) - ("libx11" ,libx11) - ("zlib" ,zlib) - ("libxml2" ,libxml2) - ("libtiff" ,libtiff) - ("libpng" ,libpng) - ("libjpeg" ,libjpeg-turbo) - ("pango" ,pango) - ("freetype" ,freetype) - ("bzip2" ,bzip2) - ("xz" ,xz))) - (native-inputs `(("pkg-config" ,pkg-config))) - (outputs '("out" - "doc")) ; 26 MiB of HTML documentation - (home-page "https://www.imagemagick.org/") - (synopsis "Create, edit, compose, or convert bitmap images") - (description - "ImageMagick is a software suite to create, edit, compose, or convert + ;; Since the Makefile overrides $docdir, modify it to + ;; refer to what we want. + (("^DOCUMENTATION_PATH[[:blank:]]*=.*$") + (let ((doc (assoc-ref outputs "doc"))) + (string-append "DOCUMENTATION_PATH = " + doc "/share/doc/" + ,name "-" + ,(package-version this-package) "\n")))) + #t)) + (add-before + 'configure 'strip-configure-xml + (lambda _ + (substitute* "config/configure.xml.in" + ;; Do not record 'configure' arguments in the + ;; configure.xml file that gets installed: That would + ;; include --docdir, and thus retain a reference to the + ;; 'doc' output. + (("@CONFIGURE_ARGS@") + "not recorded")) + #t))))) + ;; TODO: Add Jasper etc. + (inputs `(("fftw" ,fftw) + ("graphviz" ,graphviz) + ("ghostscript" ,ghostscript) + ("lcms" ,lcms) + ("libx11" ,libx11) + ("zlib" ,zlib) + ("libxml2" ,libxml2) + ("libtiff" ,libtiff) + ("libpng" ,libpng) + ("libjpeg" ,libjpeg-turbo) + ("pango" ,pango) + ("freetype" ,freetype) + ("bzip2" ,bzip2) + ("xz" ,xz))) + (native-inputs `(("pkg-config" ,pkg-config))) + (outputs '("out" + "doc")) ; 26 MiB of HTML documentation + (home-page "https://www.imagemagick.org/") + (synopsis "Create, edit, compose, or convert bitmap images") + (description + "ImageMagick is a software suite to create, edit, compose, or convert bitmap images. It can read and write images in a variety of formats (over 100) including DPX, EXR, GIF, JPEG, JPEG-2000, PDF, PhotoCD, PNG, Postscript, SVG, and TIFF. Use ImageMagick to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves.") - (license (license:fsf-free "http://www.imagemagick.org/script/license.php")))) + (license (license:fsf-free "http://www.imagemagick.org/script/license.php"))))) -(define-public imagemagick/fixed +(define-public imagemagick (package - (inherit imagemagick) - (name "imagemagick") - ;; 'g' for 'guix', appended character to retain version length so grafting - ;; works properly. - (version "6.9.12-2g") + (inherit imagemagick/stable) + (properties (alist-delete 'hidden? (package-properties imagemagick/stable))) + ;; The 7 release series has an incompatible API, while the 6 series is still + ;; maintained. Don't update to 7 until we've made sure that the ImageMagick + ;; users are ready for the 7-series API. + (version "6.9.12-4") (source (origin (method url-fetch) (uri (string-append "mirror://imagemagick/ImageMagick-" - ;; Hardcode the version here since we had to - ;; change it above. - "6.9.12-2.tar.xz")) + version ".tar.xz")) (sha256 (base32 - "17da5zihz58qm41y61sbvw626m5xfwr2nzszlikrvxyq1j1q7asa")))) - (arguments - (substitute-keyword-arguments (package-arguments imagemagick) - ((#:phases phases) - `(modify-phases ,phases - (add-after 'install 'fix-compat-cheat-rename-so - (lambda* (#:key outputs #:allow-other-keys) - (with-directory-excursion - (string-append (assoc-ref outputs "out") - "/lib") - (symlink "libMagick++-6.Q16.so.9.0.0" - "libMagick++-6.Q16.so.8.0.0") - (symlink "libMagick++-6.Q16.so.9" - "libMagick++-6.Q16.so.8") - (symlink "libMagickCore-6.Q16.so.7.0.0" - "libMagickCore-6.Q16.so.6.0.0") - (symlink "libMagickCore-6.Q16.so.7" - "libMagickCore-6.Q16.so.6") - (symlink "libMagickWand-6.Q16.so.7.0.0" - "libMagickWand-6.Q16.so.6.0.0") - (symlink "libMagickWand-6.Q16.so.7" - "libMagickWand-6.Q16.so.6")) - #t)))))))) + "1pkwij76yz7vd5grl6520pgpa912qb6kh34qamx4zfndwcx6cf6b")) + (patches + (search-patches "imagemagick-ReadDCMImage-fix.patch" + "imagemagick-ReadDCMPixels-fix.patch" + "imagemagick-WriteTHUMBNAILImage-fix.patch" + "imagemagick-CVE-2020-27829.patch")))))) (define-public perl-image-magick (package diff --git a/gnu/packages/irc.scm b/gnu/packages/irc.scm index a595b40594..3953c55a20 100644 --- a/gnu/packages/irc.scm +++ b/gnu/packages/irc.scm @@ -144,7 +144,7 @@ irssi, but graphical.") (define-public irssi (package (name "irssi") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (string-append "https://github.com/irssi/irssi/" @@ -152,7 +152,7 @@ irssi, but graphical.") version ".tar.xz")) (sha256 (base32 - "0y3mhnyr7x8ir8dlj83vbnchpfld28vdfni9yhpvls45j460c9v7")))) + "17vninwcdfxw39xl2q55qircckckjk2xlvkvlwgj5lhlxppvyix6")))) (build-system gnu-build-system) (arguments `(#:phases @@ -282,14 +282,14 @@ for the IRCv3 protocol.") (define-public ircii (package (name "ircii") - (version "20151120") + (version "20210314") (source (origin (method url-fetch) (uri (string-append "https://ircii.warped.com/" name "-" version ".tar.gz")) (sha256 (base32 - "178dc279f5j894qvp96dzz7c0jpryqlcqw5g0dc9yaxg9kgw1lqm")))) + "04jczayv1vdn21fcf5zkfaa98sy7d6ydrv2sns2i67gvya2z28j3")))) (build-system gnu-build-system) ;; TODO: We should package a small socks4/5 library/server to configure ;; ircii with socks client. `ghc-socks' pulls in lots of haskell, which diff --git a/gnu/packages/jami.scm b/gnu/packages/jami.scm index 3773c1ab0a..0adc3ed81e 100644 --- a/gnu/packages/jami.scm +++ b/gnu/packages/jami.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2019, 2020 Jan Wielkiewicz <tona_kosmicznego_smiecia@interia.pl> -;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -26,20 +26,18 @@ #:use-module (gnu packages autotools) #:use-module (gnu packages backup) #:use-module (gnu packages base) - #:use-module (gnu packages boost) - #:use-module (gnu packages check) - #:use-module (gnu packages compression) #:use-module (gnu packages crypto) #:use-module (gnu packages documentation) + #:use-module (gnu packages freedesktop) + #:use-module (gnu packages gcc) #:use-module (gnu packages gettext) #:use-module (gnu packages glib) #:use-module (gnu packages gnome) + #:use-module (gnu packages graphviz) #:use-module (gnu packages gtk) #:use-module (gnu packages libcanberra) #:use-module (gnu packages linux) - #:use-module (gnu packages multiprecision) #:use-module (gnu packages networking) - #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages pulseaudio) @@ -50,6 +48,7 @@ #:use-module (gnu packages telephony) #:use-module (gnu packages tls) #:use-module (gnu packages upnp) + #:use-module (gnu packages version-control) #:use-module (gnu packages video) #:use-module (gnu packages webkit) #:use-module (gnu packages xiph) @@ -57,13 +56,13 @@ #:use-module (gnu packages) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) + #:use-module (guix build-system qt) #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix packages) - #:use-module (guix utils) - #:use-module (srfi srfi-1)) + #:use-module (guix utils)) -(define %jami-version "20200710.1.6bd18d2") +(define %jami-version "20210326.1.cfba013") (define* (jami-source #:key keep-contrib-patches?) "Return an origin object of the tarball release sources archive of Jami. @@ -78,7 +77,7 @@ of Jami." (modules '((guix build utils))) (snippet `(begin - ;; Delete over 200 MiB of bundled tarballs. The contrib directory + ;; Delete multiple MiBs of bundled tarballs. The contrib directory ;; contains the custom patches for pjproject and other libraries used ;; by Savoir-faire Linux. (if ,keep-contrib-patches? @@ -86,21 +85,21 @@ of Jami." (delete-file-recursively "daemon/contrib")) ;; Remove code from unused Jami clients. (for-each delete-file-recursively '("client-android" + "client-electron" + "client-ios" "client-macosx" - "client-uwp" - "client-windows")) - #t)) + "client-uwp")))) (sha256 (base32 - "0lg61jv39x7kc9lq30by246xb6gcgp1rzj49ak7ff8nqpfzyfvva")))) + "1h0avma8bdzyznkz39crjyv2888bii4f49md15jg7970dyp5pdyz")))) (define %sfl-patches (jami-source #:keep-contrib-patches? #t)) (define %jami-sources (jami-source)) -;; Savoir-faire Linux modifies many libraries to add features -;; to Jami. This procedure makes applying patches to a given -;; package easy. +;; Savoir-faire Linux maintains a set of patches for some key dependencies +;; (currently pjproject and ffmpeg) of Jami that haven't yet been integrated +;; upstream. This procedure simplifies the process of applying these patches.x (define jami-apply-dependency-patches '(lambda* (#:key inputs dep-name patches) (let ((patches-directory "sfl-patches")) @@ -112,15 +111,30 @@ of Jami." dep-name)) (for-each (lambda (file) - (invoke "patch" "--force" "-p1" "-i" + (invoke "patch" "--force" "--ignore-whitespace" "-p1" "-i" (string-append patches-directory "/" file ".patch"))) patches)))) +;;; Jami maintains pjproject patches that add the ability to do ICE over TCP, +;;; among other things. The patches are currently based on pjproject 2.10. (define-public pjproject-jami (package (inherit pjproject) (name "pjproject-jami") + (version "2.10") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pjsip/pjproject") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1aklicpgwc88578k03i5d5cm5h8mfm7hmx8vfprchbmaa2p8f4z0")) + (patches (search-patches + "pjproject-correct-the-cflags-field.patch" + "pjproject-fix-pkg-config-ldflags.patch")))) (native-inputs `(("sfl-patches" ,%sfl-patches) ,@(package-native-inputs pjproject))) @@ -140,14 +154,19 @@ of Jami." "0004-multiple_listeners" "0005-fix_ebusy_turn" "0006-ignore_ipv6_on_transport_check" - "0007-pj_ice_sess" + "0007-upnp-srflx-nat-assisted-cand" "0008-fix_ioqueue_ipv6_sendto" "0009-add-config-site" - ;; Note: The base pjproject is already patched with - ;; "0010-fix-pkgconfig". + ;; Already taken care of via the origin patches. + ;;"0010-fix-pkgconfig" "0011-fix-tcp-death-detection" - "0012-fix-turn-shutdown-crash")) - #t)))))))) + "0012-fix-turn-shutdown-crash" + "0013-Assign-unique-local-preferences-for-candidates-with-" + "0014-Add-new-compile-time-setting-PJ_ICE_ST_USE_TURN_PERM" + "0015-update-local-preference-for-peer-reflexive-candidate" + "0016-use-addrinfo-instead-CFHOST" + "0017-CVE-2020-15260" + "0018-CVE-2021-21375")))))))))) ;; The following variables are configure flags used by ffmpeg-jami. They're ;; from the ring-project/daemon/contrib/src/ffmpeg/rules.mak file. We try to @@ -383,21 +402,22 @@ of Jami." `(modify-phases ,phases (add-after 'unpack 'make-git-checkout-writable (lambda _ - (for-each make-file-writable (find-files ".")) - #t)) + (for-each make-file-writable (find-files ".")))) (add-after 'unpack 'apply-patches (lambda* (#:key inputs #:allow-other-keys) (let ((jami-apply-dependency-patches ,jami-apply-dependency-patches)) ;; These patches come from: ;; "ring-project/daemon/contrib/src/ffmpeg/rules.mak". - (jami-apply-dependency-patches #:inputs inputs - #:dep-name "ffmpeg" - #:patches - '("remove-mjpeg-log" - "change-RTCP-ratio" - "rtp_ext_abs_send_time")) - #t)))))))))) + (jami-apply-dependency-patches + #:inputs inputs + #:dep-name "ffmpeg" + #:patches + '("remove-mjpeg-log" + "change-RTCP-ratio" + "rtp_ext_abs_send_time" + "libopusdec-enable-FEC" + "libopusenc-enable-FEC")))))))))))) (define-public libring (package @@ -405,150 +425,197 @@ of Jami." (version %jami-version) (source %jami-sources) (build-system gnu-build-system) + (outputs '("out" "debug")) (inputs `(("alsa-lib" ,alsa-lib) - ("boost" ,boost) + ("asio" ,asio) ("dbus-c++" ,dbus-c++) ("eudev" ,eudev) ("ffmpeg" ,ffmpeg-jami) - ("flac" ,flac) - ("gmp" ,gmp) - ("gsm" ,gsm) ("jack" ,jack-1) ("jsoncpp" ,jsoncpp) ("libarchive" ,libarchive) + ("libgit2" ,libgit2) ("libnatpmp" ,libnatpmp) - ("libogg" ,libogg) - ("libva" ,libva) + ("libsecp256k1" ,libsecp256k1) + ("libupnp" ,libupnp) ("opendht" ,opendht) - ("opus" ,opus) - ("pcre" ,pcre) + ("openssl" ,openssl) + ("pjproject" ,pjproject-jami) ("pulseaudio" ,pulseaudio) - ("libsamplerate" ,libsamplerate) - ("libsndfile" ,libsndfile) ("speex" ,speex) ("speexdsp" ,speexdsp) - ("libupnp" ,libupnp) - ("libvorbis" ,libvorbis) - ("libx264" ,libx264) - ("libvdpau" ,libvdpau) - ("yaml-cpp" ,yaml-cpp) - ("zlib" ,zlib) - ("openssl" ,openssl) - ("libsecp256k1" ,libsecp256k1) - ("python" ,python) - ("python-wrapper" ,python-wrapper) - ("restinio" ,restinio) - ("libx11" ,libx11) - ("asio" ,asio) - ;; TODO: Upstream seems to rely on a custom pjproject (a.k.a. pjsip) version. - ;; See https://git.jami.net/savoirfairelinux/ring-daemon/issues/24. - ("pjproject" ,pjproject-jami))) + ("webrtc-audio-processing" ,webrtc-audio-processing) + ("yaml-cpp" ,yaml-cpp))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) + ("gcc" ,gcc-8) ;charconv requires GCC 8.1+ ("libtool" ,libtool) + ("perl" ,perl) ;to generate manpages with pod2man ("pkg-config" ,pkg-config) - ("which" ,which) - ("cppunit" ,cppunit) - ("perl" ,perl))) ; Needed for documentation. + ("which" ,which))) (arguments `(#:tests? #f ; The tests fail to compile due to missing headers. + #:make-flags '("V=1") ;build verbosely #:phases (modify-phases %standard-phases (add-after 'unpack 'change-directory (lambda _ - (chdir "daemon") - #t)) + (chdir "daemon"))) (add-before 'build 'add-lib-dir (lambda _ - (mkdir-p "src/lib") - #t))))) - (synopsis "Distributed multimedia communications platform") - (description "Jami (formerly GNU Ring) is a secure and distributed voice, -video and chat communication platform that requires no centralized server and -leaves the power of privacy in the hands of the user. It supports the SIP and -IAX protocols, as well as decentralized calling using P2P-DHT. - -This package provides a library and daemon implementing the Jami core -functionality.") + (mkdir-p "src/lib")))))) + (synopsis "Jami core library and daemon") + (description "This package provides a library and daemon implementing the +Jami core functionality. Jami is a secure and distributed voice, video and +chat communication platform that requires no centralized server and leaves the +power of privacy in the hands of the user. It supports the SIP and IAX +protocols, as well as decentralized calling using P2P-DHT.") (home-page "https://jami.net/") (license license:gpl3+))) (define-public libringclient (package - (inherit libring) (name "libringclient") + (version %jami-version) + (source %jami-sources) (build-system cmake-build-system) + (outputs '("out" "debug")) + (inputs + `(("libring" ,libring) + ("network-manager" ,network-manager))) (propagated-inputs - `(("libring" ,libring) ; For 'dring'. - ("qtbase" ,qtbase) ; Qt is included in several installed headers. - ("qttools" ,qttools))) + `(("qtbase" ,qtbase))) ; Qt is included in several installed headers. (arguments `(#:tests? #f ; There is no testsuite. #:configure-flags - (list (string-append "-DRING_BUILD_DIR=" - (assoc-ref %build-inputs "libring") "/include")) + (let ((libring (assoc-ref %build-inputs "libring"))) + (list (string-append "-DRING_XML_INTERFACES_DIR=" + libring "/share/dbus-1/interfaces") + (string-append "-DRING_BUILD_DIR=" libring "/include") + ;; Use LIBWRAP, which removes the requirement on DBus. Qt + ;; links with the dbus library in Guix, which expects to find + ;; its configuration under /etc rather than /usr/share/dbus-1, + ;; which is perhaps the reason the auto-launching of dring + ;; doesn't work on foreign distributions. + + ;; FIXME: Disabled for now, as it causes a segfault when + ;; attempting video calls (see: + ;; https://git.jami.net/savoirfairelinux/ring-lrc/-/issues/466). + "-DENABLE_LIBWRAP=false")) #:phases (modify-phases %standard-phases (add-after 'unpack 'change-directory (lambda _ - (chdir "lrc") - #t)) - (add-before 'configure 'fix-dbus-interfaces-path - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "CMakeLists.txt" - (("\\$\\{CMAKE_INSTALL_PREFIX\\}(/share/dbus-1/interfaces)" _ dbus-interfaces-path-suffix) - (string-append (assoc-ref inputs "libring") - dbus-interfaces-path-suffix)))))))) - (synopsis "Distributed multimedia communications platform") - (description "Jami (formerly GNU Ring) is a secure and distributed voice, -video and chat communication platform that requires no centralized server and -leaves the power of privacy in the hands of the user. It supports the SIP and -IAX protocols, as well as decentralized calling using P2P-DHT. - -This package provides a library common to all Jami clients.") + (chdir "lrc")))))) + (synopsis "Jami client library") + (description "This package provides a library common to all Jami clients. +Jami is a secure and distributed voice, video and chat communication platform +that requires no centralized server and leaves the power of privacy in the +hands of the user. It supports the SIP and IAX protocols, as well as +decentralized calling using P2P-DHT.") (home-page "https://jami.net") (license license:gpl3+))) -(define-public jami +(define-public jami-gnome (package - (inherit libring) - (name "jami") + (name "jami-gnome") + (version %jami-version) + (source %jami-sources) (build-system cmake-build-system) + (outputs '("out" "debug")) (inputs - `(("libringclient" ,libringclient) - ("gtk+" ,gtk+) - ("qrencode" ,qrencode) - ("libnotify" ,libnotify) - ("clutter" ,clutter) + `(("clutter" ,clutter) ("clutter-gtk" ,clutter-gtk) + ("gtk+" ,gtk+) ("libcanberra" ,libcanberra) - ("webkitgtk" ,webkitgtk) - ("sqlite" ,sqlite))) + ("libappindicator" ,libappindicator) + ("libnotify" ,libnotify) + ("libringclient" ,libringclient) + ("network-manager" ,network-manager) + ("qrencode" ,qrencode) + ("sqlite" ,sqlite) + ("webkitgtk" ,webkitgtk))) (native-inputs `(("pkg-config" ,pkg-config) ("gettext" ,gettext-minimal) - ("glib:bin" ,glib "bin") - ("doxygen" ,doxygen))) + ("glib:bin" ,glib "bin"))) ;for glib-compile-resources (propagated-inputs - `(("libring" ,libring) ; Contains `dring', the daemon, which is automatically by d-bus. - ("adwaita-icon-theme" ,adwaita-icon-theme) - ("evolution-data-server" ,evolution-data-server))) + `(("libring" ,libring) ; Contains 'dring', the daemon, which is + ; automatically started by DBus. + ("adwaita-icon-theme" ,adwaita-icon-theme))) (arguments `(#:tests? #f ; There is no testsuite. #:phases (modify-phases %standard-phases (add-after 'unpack 'change-directory (lambda _ - (chdir "client-gnome") - #t))))) - (synopsis "Distributed, privacy-respecting communication program") - (description "Jami (formerly GNU Ring) is a secure and distributed voice, -video and chat communication platform that requires no centralized server and -leaves the power of privacy in the hands of the user. It supports the SIP and -IAX protocols, as well as decentralized calling using P2P-DHT. + (chdir "client-gnome")))))) + (synopsis "Jami client for GNOME") + (description "This package provides a Jami client for the GNOME desktop. +Jami is a secure and distributed voice, video and chat communication platform +that requires no centralized server and leaves the power of privacy in the +hands of the user. It supports the SIP and IAX protocols, as well as +decentralized calling using P2P-DHT.") + (home-page "https://jami.net") + (license license:gpl3+))) + +;;; Keep this until the Qt client matures enough to become the +;;; main 'jami' client. +(define-public jami + (deprecated-package "jami" jami-gnome)) -This package provides the Jami client for the GNOME desktop.") +(define-public jami-qt + (package + (name "jami-qt") ;to be renamed 'jami' at some point + (version %jami-version) + ;; The Qt client code is not yet part of the release tarball; fetch it + ;; from git for now. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.jami.net/savoirfairelinux/jami-client-qt.git") + (commit "ae21c17da5e8f730ae3895ccbc4da8047e3be1eb"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1rf3lpk8c4qc12pi6pn4rdp7i8b83xv64yqr0q47rzv9s518qyjp")))) + (build-system qt-build-system) + (outputs '("out" "debug")) + (arguments + `(#:tests? #f ;no test suite + ;; TODO: Uncomment after switching back to the tarball source. + ;; #:phases + ;; (modify-phases %standard-phases + ;; (add-after 'unpack 'change-directory + ;; (lambda _ + ;; (chdir "client-qt")))) + )) + (native-inputs + `(("pkg-config" ,pkg-config) + ("qttools" ,qttools) + ("doxygen" ,doxygen) + ("graphviz" ,graphviz))) + (inputs + `(("libringclient" ,libringclient) + ("network-manager" ,network-manager) + ("qrencode" ,qrencode) + ("qtsvg" ,qtsvg) + ("qtwebengine" ,qtwebengine) + ("qtwebchannel" ,qtwebchannel) + ("qtmultimedia" ,qtmultimedia) + ("qtdeclarative" ,qtdeclarative) + ("qtgraphicaleffects" ,qtgraphicaleffects) + ("qtquickcontrols" ,qtquickcontrols) + ("qtquickcontrols2" ,qtquickcontrols2))) + (propagated-inputs + `(("libring" ,libring))) ;for dring (home-page "https://jami.net") + (synopsis "Qt Jami client") + (description "This package provides the Jami Qt client. Jami is a secure +and distributed voice, video and chat communication platform that requires no +centralized server and leaves the power of privacy in the hands of the user. +It supports the SIP and IAX protocols, as well as decentralized calling using +P2P-DHT.") (license license:gpl3+))) diff --git a/gnu/packages/javascript.scm b/gnu/packages/javascript.scm index 00e89612a5..bb3a8063e3 100644 --- a/gnu/packages/javascript.scm +++ b/gnu/packages/javascript.scm @@ -597,14 +597,14 @@ roots, or wrestle with obscure build systems.") (define-public quickjs (package (name "quickjs") - (version "2020-11-08") + (version "2021-03-27") (source (origin (method url-fetch) (uri (string-append "https://bellard.org/quickjs/quickjs-" version ".tar.xz")) (sha256 (base32 - "0yqqcjxi3cqagw184mqrxpvqg486x7c233r3cp9mxachngd6779f")))) + "06pywwpmfwjz225h59wf90q96a2fd66qfcw5xa6m6y9k9k7glnx4")))) (build-system gnu-build-system) (arguments `(#:make-flags diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 0d35cbde57..d79acf0b17 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz> +;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -21,8 +22,35 @@ #:use-module (guix packages) #:use-module (guix git-download) #:use-module (guix build-system julia) + #:use-module (gnu packages gcc) + #:use-module (gnu packages maths) #:use-module (gnu packages tls)) +(define-public julia-abstractffts + (package + (name "julia-abstractffts") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaMath/AbstractFFTS.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0")))) + (build-system julia-build-system) + (inputs ;required for tests + `(("julia-unitful" ,julia-unitful))) + (home-page "https://github.com/JuliaGPU/Adapt.jl") + (synopsis "General framework for fast Fourier transforms (FFTs)") + (description "This package allows multiple FFT packages to co-exist with +the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is +mainly not intended to be used directly. Instead, developers of packages that +implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the +types/functions defined in AbstractFFTs.") + (license license:expat))) + (define-public julia-adapt (package (name "julia-adapt") @@ -95,6 +123,192 @@ operations. It can wrap any @code{IO} type automatically making incremental reading and writing faster.") (license license:expat))) +(define-public julia-calculus + (package + (name "julia-calculus") + (version "0.5.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaMath/Calculus.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2")))) + (build-system julia-build-system) + (home-page "https://github.com/JuliaMath/Calculus.jl") + (synopsis "Common utilities for automatic differentiation") + (description "This package provides tools for working with the basic +calculus operations of differentiation and integration. The @code{Calculus} +package produces approximate derivatives by several forms of finite +differencing or produces exact derivative using symbolic differentiation. It +can also be used to compute definite integrals by different numerical +methods.") + (license license:expat))) + +(define-public julia-chainrules + (package + (name "julia-chainrules") + (version "0.7.54") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/ChainRules.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1x4w71v8cw0vpba47h8f5xq4gyjfxbcvayzf7m41yg8gf49s9pkf")))) + (build-system julia-build-system) + (inputs ;required for test + `(("julia-chainrulestestutils" ,julia-chainrulestestutils) + ("julia-finitedifferences" ,julia-finitedifferences) + ("julia-nanmath" ,julia-nanmath) + ("julia-specialfunctions" ,julia-specialfunctions))) + (propagated-inputs + `(("julia-chainrulescore" ,julia-chainrulescore) + ("julia-compat" ,julia-compat) + ("julia-reexport" ,julia-reexport) + ("julia-requires" ,julia-requires))) + (home-page "https://github.com/JuliaDiff/ChainRules.jl") + (synopsis "Common utilities for automatic differentiation") + (description "The is package provides a variety of common utilities that +can be used by downstream automatic differentiation (AD) tools to define and +execute forward-, reverse-, and mixed-mode primitives.") + (license license:expat))) + +(define-public julia-chainrulescore + (package + (name "julia-chainrulescore") + (version "0.9.29") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/ChainRulesCore.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1k0iayw39n1ikkkhvyi4498vsnzc94skqs41gnd15632gxjfvki4")))) + (build-system julia-build-system) + (inputs ;required for tests + `(("julia-benchmarktools" ,julia-benchmarktools) + ("julia-staticarrays" ,julia-staticarrays))) + (propagated-inputs + `(("julia-compat" ,julia-compat))) + (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl") + (synopsis "Common utilities used by downstream automatic differentiation tools") + (description "The package provides a light-weight dependency for defining +sensitivities for functions without the need to depend on ChainRules itself.") + (license license:expat))) + +(define-public julia-chainrulestestutils + (package + (name "julia-chainrulestestutils") + (version "0.6.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1pzs947adnb3cx1qd0cxp2fidk9szz0zsqbas90z1lhydykkvkil")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-chainrulescore" ,julia-chainrulescore) + ("julia-compat" ,julia-compat) + ("julia-finitedifference" ,julia-finitedifferences))) + (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") + (synopsis "Common utilities used by downstream automatic differentiation tools") + (description "This package is designed to help in testing +@code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main +entry points are @code{ChainRulesTestUtils.frule_test}, +@code{ChainRulesTestUtils.rrule_test}, and +@code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the +rules against numerical differentiation (using @code{FiniteDifferences.jl}). + +@code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it +can be a test-only dependency, allowing it to have potentially heavy +dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.") + (license license:expat))) + +(define-public julia-colors + (package + (name "julia-colors") + (version "0.12.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaGraphics/Colors.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "156zsszgwh6bmznsan0zyha6yvcxw3c5mvc5vr2qfsgxbyh36ln6")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-colortypes" ,julia-colortypes) + ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) + ("julia-reexport" ,julia-reexport))) + (home-page "https://github.com/JuliaGraphics/Colors.jl") + (synopsis "Tools for dealing with color") + (description "This package provides a wide array of functions for dealing +with color. This includes conversion between colorspaces, measuring distance +between colors, simulating color blindness, parsing colors, and generating +color scales for graphics.") + (license license:expat))) + +(define-public julia-colortypes + (package + (name "julia-colortypes") + (version "0.10.12") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaGraphics/ColorTypes.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "176hr3qbz7lncmykks2qaj3cqisnzim7wi5jwsca9ld26wwyvyqq")))) + (arguments + '(#:tests? #f)) ;require Documenter, not packaged yet + (build-system julia-build-system) + (propagated-inputs + `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) + (home-page "https://github.com/JuliaGraphics/ColorTypes.jl") + (synopsis "Basic color types and constructor") + (description "This minimalistic package serves as the foundation for +working with colors in Julia. It defines basic color types and their +constructors, and sets up traits and show methods to make them easier to work +with.") + (license license:expat))) + +(define-public julia-commonsubexpressions + (package + (name "julia-commonsubexpressions") + (version "0.3.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rdeits/CommonSubexpressions.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-macrotools" ,julia-macrotools))) + (home-page "https://github.com/rdeits/CommonSubexpressions.jl") + (synopsis "@code{@@cse} macro for Julia") + (description "This package provides the @code{@@cse} macro, which performs +common subexpression elimination.") + (license license:expat))) + (define-public julia-compat (package (name "julia-compat") @@ -117,6 +331,71 @@ provides a macro that lets you use the latest syntax in a backwards-compatible way.") (license license:expat))) +;;; TODO: Remove this autogenerated source package +;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/> +(define-public julia-compilersupportlibraries-jll + (package + (name "julia-compilersupportlibraries-jll") + (version "0.4.0+1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl") + (commit (string-append "CompilerSupportLibraries-v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "03j6xdvps259mhdzpjqf41l65w2l9sahvxg4wrp34hcf69wkrzpy")))) + (build-system julia-build-system) + (arguments + `(#:tests? #f ; no runtests.jl + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'override-binary-path + (lambda* (#:key inputs #:allow-other-keys) + (map + (lambda (wrapper) + (substitute* wrapper + (("generate_wrapper_header.*") + (string-append + "generate_wrapper_header(\"CompilerSupportLibraries\", \"" + (assoc-ref inputs "gfortran:lib") "\")\n")))) + ;; There's a Julia file for each platform, override them all + (find-files "src/wrappers/" "\\.jl$")) + #t))))) + (inputs ;required by artifacts + `(("gfortran:lib" ,gfortran "lib"))) + (propagated-inputs + `(("julia-jllwrappers" ,julia-jllwrappers))) + (home-page "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl") + (synopsis "Internal wrappers") + (description "This package provides compiler support for libraries. It is +an autogenerated source package constructed using @code{BinaryBuilder.jl}. The +originating @code{build_tarballs.jl} script can be found on the community +build tree Yggdrasil.") + (license license:expat))) + +(define-public julia-constructionbase + (let ((commit "de77e2865b554f9b078fd8c35b593cce0554ae02")) + (package + (name "julia-constructionbase") + (version "1.1.0") ;tag not created upstream + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaObjects/ConstructionBase.jl") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1y79sfj0rds1skl9j16p9161hwa9khm0xc2m4hgjcbh5zzvyr57v")))) + (build-system julia-build-system) + (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/") + (synopsis "Primitive functions for construction of objects") + (description "This very lightweight package provides primitive functions +for construction of objects.") + (license license:expat)))) + (define-public julia-datastructures (package (name "julia-datastructures") @@ -141,6 +420,143 @@ including, @code{CircularBuffer}, @code{Queue}, @code{Stack}, @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.") (license license:expat))) +(define-public julia-diffresults + (package + (name "julia-diffresults") + (version "1.0.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/DiffResults.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v")))) + (propagated-inputs + `(("julia-staticarrays" ,julia-staticarrays))) + (build-system julia-build-system) + (home-page "https://github.com/JuliaDiff/DiffResults.jl") + (synopsis "In-place differentiation methods of primal values at multi-order") + (description "This package provides the @code{DiffResult} type, which can +be passed to in-place differentiation methods instead of an output buffer.") + (license license:expat))) + +(define-public julia-diffrules + (package + (name "julia-diffrules") + (version "1.0.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/DiffRules.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl")))) + (propagated-inputs + `(("julia-nanmath" ,julia-nanmath) + ("julia-specialfunctions" ,julia-specialfunctions))) + (build-system julia-build-system) + (home-page "https://github.com/JuliaDiff/DiffRules.jl") + (synopsis "Primitive differentiation rules") + (description "This package provides primitive differentiation rules that +can be composed via various formulations of the chain rule. Using +@code{DiffRules}, new differentiation rules can defined, query whether or not +a given rule exists, and symbolically apply rules to simple Julia expressions.") + (license license:expat))) + +(define-public julia-difftests + (package + (name "julia-difftests") + (version "0.1.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/DiffTests.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57")))) + (build-system julia-build-system) + (home-page "https://github.com/JuliaDiff/DiffTests.jl") + (synopsis "Common test functions for differentiation tools") + (description "This package contains a common suite of test functions for +stressing the robustness of differentiation tools.") + (license license:expat))) + +(define-public julia-example + (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388")) + (package + (name "julia-example") + (version "0.5.4") ;tag not created upstream + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaLang/Example.jl") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx")))) + (build-system julia-build-system) + (home-page "https://github.com/JuliaLang/Example.jl") + (synopsis "Module providing examples") + (description "This package provides various examples.") + (license license:expat)))) + +(define-public julia-fillarrays + (package + (name "julia-fillarrays") + (version "0.11.7") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaArrays/FillArrays.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d")))) + (build-system julia-build-system) + (inputs ;required by tests + `(("julia-staticarrays" ,julia-staticarrays))) + (home-page "https://github.com/JuliaArrays/FillArrays.jl") + (synopsis "Lazy matrix representation") + (description "This package allows to lazily represent matrices filled with +a single entry, as well as identity matrices. This package exports the +following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, +@code{Trues} and @code{Falses}.") + (license license:expat))) + +(define-public julia-finitedifferences + (package + (name "julia-finitedifferences") + (version "0.12.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/FiniteDifferences.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0dcx34026xdpfmbjls3mrknl8ww62kxxfr77kfihbazsfg2gp5b4")))) + (build-system julia-build-system) + (inputs + `(("julia-benchmarktools" ,julia-benchmarktools))) + (propagated-inputs + `(("julia-chainrulescore" ,julia-chainrulescore) + ("julia-richardson" ,julia-richardson) + ("julia-staticarrays" ,julia-staticarrays))) + (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl") + (synopsis "Estimates derivatives with finite differences") + (description "This package calculates approximate derivatives numerically +using finite difference.") + (license license:expat))) + (define-public julia-fixedpointnumbers (package (name "julia-fixedpointnumbers") @@ -176,6 +592,38 @@ scaled by a constant factor. Consequently, they have a fixed number of digits (bits) after the decimal (radix) point.") (license license:expat))) +(define-public julia-forwarddiff + (package + (name "julia-forwarddiff") + (version "0.10.17") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaDiff/ForwardDiff.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "17xaz4v0zr46p7w873w1fwf31phdnhr0vbdym9yr4flmpzi528jw")))) + (build-system julia-build-system) + (inputs ;required for tests + `(("julia-calculus" ,julia-calculus) + ("julia-difftests" ,julia-difftests))) + (propagated-inputs + `(("julia-commonsubexpressions" ,julia-commonsubexpressions) + ("julia-diffresults" ,julia-diffresults) + ("julia-diffrules" ,julia-diffrules) + ("julia-nanmath" ,julia-nanmath) + ("julia-specialfunctions" ,julia-specialfunctions) + ("julia-staticarrays" ,julia-staticarrays))) + (home-page "https://github.com/JuliaDiff/ForwardDiff.jl") + (synopsis "Methods to take multidimensional derivatives") + (description "This package implements methods to take derivatives, +gradients, Jacobians, Hessians, and higher-order derivatives of native Julia +functions (or any callable object, really) using forward mode automatic +differentiation (AD).") + (license license:expat))) + (define-public julia-http (package (name "julia-http") @@ -254,6 +702,32 @@ implementing both a client and a server.") allows to interface with @file{.ini} files.") (license license:expat))) +(define-public julia-irtools + (package + (name "julia-irtools") + (version "0.4.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FluxML/IRTools.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y")))) + (arguments + '(#:tests? #f)) ;require Documenter, not packaged yet + (build-system julia-build-system) + (propagated-inputs + `(("julia-macrotools" ,julia-macrotools))) + (home-page "https://github.com/FluxML/IRTools.jl") + (synopsis "Simple and flexible IR format") + (description "This package provides a simple and flexible IR format, +expressive enough to work with both lowered and typed Julia code, as well as +external IRs. It can be used with Julia metaprogramming tools such as +Cassette.") + (license license:expat))) + (define-public julia-jllwrappers (package (name "julia-jllwrappers") @@ -322,6 +796,27 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") and printing JSON documents.") (license license:expat))) +(define-public julia-macrotools + (package + (name "julia-macrotools") + (version "0.5.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FluxML/MacroTools.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f")))) + (build-system julia-build-system) + (home-page "https://fluxml.ai/MacroTools.jl") + (synopsis "Tools for working with Julia code and expressions") + (description "This library provides tools for working with Julia code and +expressions. This includes a template-matching system and code-walking tools +that let you do deep transformations of code.") + (license license:expat))) + (define-public julia-mbedtls (package (name "julia-mbedtls") @@ -349,7 +844,7 @@ and printing JSON documents.") (home-page "https://github.com/JuliaLang/MbedTLS.jl") (synopsis "Apache's mbed TLS library wrapper") (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed -TLS} and cryptography C libary for Julia.") +TLS} and cryptography C library for Julia.") (license license:expat))) (define-public julia-mbedtls-jll @@ -392,6 +887,26 @@ TLS} and cryptography C libary for Julia.") wrappers.") (license license:expat))) +(define-public julia-nanmath + (package + (name "julia-nanmath") + (version "0.3.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mlubin/NaNMath.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q")))) + (build-system julia-build-system) + (home-page "https://github.com/mlubin/NaNMath.jl") + (synopsis "Implementations of basic math functions") + (description "Implementations of basic math functions which return +@code{NaN} instead of throwing a @code{DomainError}.") + (license license:expat))) + (define-public julia-orderedcollections (package (name "julia-orderedcollections") @@ -439,6 +954,52 @@ have arbitrary indices, similar to those found in some other programming languages like Fortran.") (license license:expat))) +;;; TODO: Remove this autogenerated source package +;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/> +(define-public julia-openspecfun-jll +(let ((commit "6c505cce3bdcd9cd2b15b4f9362ec3a42c4da71c")) + (package + (name "julia-openspecfun-jll") + (version "0.5.3+4") ;tag not created upstream + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bl2gcgndsbiwhwy8fl070cjm1fyf9kxj6gkikgirmzgjl29iakn")))) + (build-system julia-build-system) + (arguments + `(#:tests? #f ; no runtests.jl + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'override-binary-path + (lambda* (#:key inputs #:allow-other-keys) + (map + (lambda (wrapper) + (substitute* wrapper + (("generate_wrapper_header.*") + (string-append + "generate_wrapper_header(\"OpenSpecFun\", \"" + (assoc-ref inputs "openspecfun") "\")\n")))) + ;; There's a Julia file for each platform, override them all + (find-files "src/wrappers/" "\\.jl$")) + #t))))) + (inputs + `(("openspecfun" ,openspecfun))) + (propagated-inputs + `(("julia-jllwrappers" ,julia-jllwrappers) + ("julia-compilersupportlibraries-jll" ,julia-compilersupportlibraries-jll))) + (home-page "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl") + (synopsis "Internal wrappers") + (description "This package provides a wrapper for OpenSpecFun. It is an +autogenerated source package constructed using @code{BinaryBuilder.jl}. The +originating @code{build_tarballs.jl} script can be found on the community +build tree Yggdrasil.") + (license license:expat)))) + (define-public julia-parsers (package (name "julia-parsers") @@ -459,6 +1020,130 @@ languages like Fortran.") utilities for Julia.") (license license:expat))) +(define-public julia-reexport + (package + (name "julia-reexport") + (version "1.0.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/simonster/Reexport.jl") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1yhhja1zz6dy5f4fd19bdwd6jwgj7q4w3avzgyg1hjhmdl8jrh0s")))) + (build-system julia-build-system) + (home-page "https://github.com/simonster/Reexport.jl") + (synopsis "Re-export modules and symbols") + (description "This package provides tools to re-export modules and symbols.") + (license license:expat))) + +(define-public julia-requires + (package + (name "julia-requires") + (version "1.1.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaPackaging/Requires.jl/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01")))) + (build-system julia-build-system) + (inputs ;required for test + `(("julia-example" ,julia-example))) + (propagated-inputs + `(("julia-colors" ,julia-colors))) + (home-page "https://github.com/JuliaPackaging/Requires.jl/") + (synopsis "Faster package loader") + (description "This package make loading packages faster, maybe. It +supports specifying glue code in packages which will load automatically when +another package is loaded, so that explicit dependencies (and long load times) +can be avoided.") + (license license:expat))) + +(define-public julia-richardson + (package + (name "julia-richardson") + (version "1.4.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaMath/Richardson.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx")))) + (build-system julia-build-system) + (home-page "https://juliapackages.com/p/richardson") + (synopsis "Extrapolate function using Richardson method") + (description "This package provides a function extrapolate that +extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f} +only at a geometric sequence of points @code{> x0} (or optionally @code{< +x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken +tableau, which adaptively increases the degree of an extrapolation polynomial +until convergence is achieved to a desired tolerance (or convergence stalls +due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to +high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some +other power series in @code{h}.") + (license license:expat))) + +(define-public julia-specialfunctions + (package + (name "julia-specialfunctions") + (version "1.3.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaMath/SpecialFunctions.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80")))) + (build-system julia-build-system) + (inputs + `(("julia-chainrulestestutils" ,julia-chainrulestestutils))) + (propagated-inputs + `(("julia-chainrulescore" ,julia-chainrulescore) + ("julia-openspecfun-jll" ,julia-openspecfun-jll))) + (home-page "https://github.com/JuliaMath/SpecialFunctions.jl") + (synopsis "Special mathematical functions") + (description "This package provides special mathematical functions, +including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and +cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and +polygamma functions.") + (license license:expat))) + +(define-public julia-staticarrays + (package + (name "julia-staticarrays") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaArrays/StaticArrays.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "01z8bcqwpfkp8p1h1r36pr5cc3798y76zkas7g3206pcsdhvlkz1")))) + (build-system julia-build-system) + (inputs + `(("julia-benchmarktools" ,julia-benchmarktools))) + (home-page "https://github.com/JuliaArrays/StaticArrays.jl") + (synopsis "Statically sized arrays") + (description "This package provides a framework for implementing +statically sized arrays in Julia, using the abstract type +@code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of +@code{StaticArray} will provide fast implementations of common array and +linear algebra operations.") + (license license:expat))) + (define-public julia-uris (package (name "julia-uris") @@ -492,3 +1177,82 @@ utilities for Julia.") working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC 3986.") (license license:expat))) + +(define-public julia-unitful + (package + (name "julia-unitful") + (version "1.6.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/PainterQubits/Unitful.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0g5bhlvay9yk11c5dqwbzmb3q7lzj0cq5zchyk39d59fkvvmxvq3")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-constructionbase" ,julia-constructionbase))) + (home-page "https://painterqubits.github.io/Unitful.jl/stable/") + (synopsis "Physical units in Julia") + (description "This package supports SI units and also many other unit +system.") + (license license:expat))) + +(define-public julia-zygoterules + (package + (name "julia-zygoterules") + (version "0.2.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FluxML/ZygoteRules.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-macrotools" ,julia-macrotools))) + (home-page "https://github.com/FluxML/ZygoteRules.jl") + (synopsis "Add minimal custom gradients to Zygote") + (description "Minimal package which enables to add custom gradients to +Zygote, without depending on Zygote itself.") + (license license:expat))) + +(define-public julia-zygote + (package + (name "julia-zygote") + (version "0.6.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FluxML/Zygote.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1h2ph0lsisbkh8y4xgwzgw9p5zi243q8zzp5gfh3zw9pzkx6a1rf")))) + (build-system julia-build-system) + (arguments + `(#:tests? #f)) ;require CUDA, not packaged yet + (propagated-inputs + `(("julia-abstractffs" ,julia-abstractffts) + ("julia-chainrules" ,julia-chainrules) + ("julia-diffrules" ,julia-diffrules) + ("julia-fillarrays" ,julia-fillarrays) + ("julia-forwarddiff" ,julia-forwarddiff) + ("julia-irtools" ,julia-irtools) + ("julia-macrotools" ,julia-macrotools) + ("julia-nanmath" ,julia-nanmath) + ("julia-requires" ,julia-requires) + ("julia-specialfunctions" ,julia-specialfunctions) + ("julia-zygote-rules" ,julia-zygoterules))) + (home-page "https://fluxml.ai/Zygote.jl") + (synopsis "Automatic differentiation in Julia") + (description "Zygote provides source-to-source automatic +differentiation (AD) in Julia, and is the next-generation AD system for the +Flux differentiable programming framework.") + (license license:expat))) diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm index f826ebd171..52869dbeeb 100644 --- a/gnu/packages/jupyter.scm +++ b/gnu/packages/jupyter.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,9 +30,12 @@ #:use-module (gnu packages networking) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) + #:use-module (gnu packages python-check) #:use-module (gnu packages python-xyz) #:use-module (gnu packages time) - #:use-module (gnu packages tls)) + #:use-module (gnu packages tls) + #:use-module (gnu packages xml)) (define-public python-jupyter-protocol (package @@ -184,3 +188,125 @@ Several Jupyter kernels are built upon @code{xeus}, such as @code{xeus-cling}, a kernel for the C++ programming language, and @code{xeus-python}, an alternative Python kernel for Jupyter.") (license license:bsd-3))) + +(define-public python-jupyterlab-pygments + (package + (name "python-jupyterlab-pygments") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyterlab_pygments" version)) + (sha256 + (base32 + "0ij14mmnc39nmf84i0av6j9glazjic7wzv1qyhr0j5966s3s1kfg")))) + (build-system python-build-system) + (arguments '(#:tests? #false)) ; there are no tests + (propagated-inputs + `(("python-pygments" ,python-pygments))) + (home-page "https://jupyter.org") + (synopsis "Pygments theme using JupyterLab CSS variables") + (description + "This package contains a syntax coloring theme for pygments making use of +the JupyterLab CSS variables.") + (license license:bsd-3))) + +(define-public python-jupyter-packaging + (package + (name "python-jupyter-packaging") + (version "0.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyter_packaging" version)) + (sha256 + (base32 + "0r015c0m713d19asmpimsw6bk2sqv2lpd2nccgjzjdj5h1crg0bg")))) + (build-system python-build-system) + (propagated-inputs + `(("python-deprecation" ,python-deprecation) + ("python-packaging" ,python-packaging) + ("python-setuptools" ,python-setuptools) + ("python-tomlkit" ,python-tomlkit) + ("python-wheel" ,python-wheel))) + (native-inputs + `(("python-pypa-build" ,python-pypa-build) + ("python-coverage" ,python-coverage) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock))) + (home-page "https://jupyter.org") + (synopsis "Jupyter packaging utilities") + (description "This package provides tools to help build and install +Jupyter Python packages that require a pre-build step that may include +JavaScript build steps.") + (license license:bsd-3))) + +(define-public python-jupyterlab-widgets + (package + (name "python-jupyterlab-widgets") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyterlab_widgets" version)) + (sha256 + (base32 + "0y7vhhas3qndiypcpcfnhrj9n92v2w4hdc86nn620s9h9nl2j6jw")))) + (build-system python-build-system) + (native-inputs + `(("python-jupyter-packaging" ,python-jupyter-packaging) + ("python-setuptools" ,python-setuptools))) + (home-page "https://github.com/jupyter-widgets/ipywidgets") + (synopsis "Interactive widgets for Jupyter Notebooks") + (description "ipywidgets, also known as jupyter-widgets or simply widgets, +are interactive HTML widgets for Jupyter notebooks and the IPython kernel.") + (license license:bsd-3))) + +(define-public python-nbclient + (package + (name "python-nbclient") + (version "0.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nbclient" version)) + (sha256 + (base32 + "172q4r6mq0lg394di0pc6ipvniy14jg38wkdsj48r366609jf5yv")))) + (build-system python-build-system) + ;; Tests require a kernel via python-ipykernel, and also tools from + ;; nbconvert. + (arguments '(#:tests? #false)) + (propagated-inputs + `(("python-async-generator" ,python-async-generator) + ("python-jupyter-client" ,python-jupyter-client) + ("python-nbformat" ,python-nbformat) + ("python-nest-asyncio" ,python-nest-asyncio) + ("python-traitlets" ,python-traitlets))) + (native-inputs + `(("python-black" ,python-black) + ("python-bumpversion" ,python-bumpversion) + ("python-check-manifest" ,python-check-manifest) + ("python-codecov" ,python-codecov) + ("python-coverage" ,python-coverage) + ("python-flake8" ,python-flake8) + ;; ("python-ipykernel" ,python-ipykernel) + ;; ("python-ipython" ,python-ipython) + ;; ("python-ipywidgets" ,python-ipywidgets) + ("python-mypy" ,python-mypy) + ("python-pip" ,python-pip) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-setuptools" ,python-setuptools) + ("python-testpath" ,python-testpath) + ("python-tox" ,python-tox) + ("python-twine" ,python-twine) + ("python-wheel" ,python-wheel) + ("python-xmltodict" ,python-xmltodict))) + (home-page "https://jupyter.org") + (synopsis "Client library for executing notebooks") + (description + "This package provides a client library for executing notebooks. Formerly +nbconvert's @code{ExecutePreprocessor.}") + (license license:bsd-3))) diff --git a/gnu/packages/kde-pim.scm b/gnu/packages/kde-pim.scm index d790e94c87..74e8bdb8fd 100644 --- a/gnu/packages/kde-pim.scm +++ b/gnu/packages/kde-pim.scm @@ -1112,7 +1112,7 @@ and retrieving certificates from LDAP servers.") (synopsis "Full featured graphical email client") (description "KMail supports multiple accounts, mail filtering and email encryption. The program let you configure your workflow and it has good -integration into KDE (Plasma Desktop) but is also useable with other Desktop +integration into KDE (Plasma Desktop) but is also usable with other Desktop Environments. KMail is the email component of Kontact, the integrated personal information diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm index 213def42e3..4a989b32dd 100644 --- a/gnu/packages/kde.scm +++ b/gnu/packages/kde.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2020 Prafulla Giri <pratheblackdiamond@gmail.com> ;;; Copyright © 2020 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2021 Alexandros Theodotou <alex@zrythm.org> +;;; Copyright © 2021 la snesne <lasnesne@lagunposprasihopre.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -458,7 +459,7 @@ illustrate project schedules.") (define-public krita (package (name "krita") - (version "4.4.2") + (version "4.4.3") (source (origin (method url-fetch) (uri (string-append @@ -466,7 +467,7 @@ illustrate project schedules.") "/krita-" version ".tar.gz")) (sha256 (base32 - "14lprcv7xw6r19bmylcz4c1p1jfazmza2b4m48f3x7vmdv2sx5ln")))) + "0rwghzci2wn2jmisvnzs23yxc2z3d4dcx2qbbhcvjyi3q8ij61nl")))) (build-system cmake-build-system) (arguments `(#:tests? #f diff --git a/gnu/packages/language.scm b/gnu/packages/language.scm index d4b9b8d4cb..55a1b72d74 100644 --- a/gnu/packages/language.scm +++ b/gnu/packages/language.scm @@ -170,7 +170,7 @@ ("gobject-introspection" ,gobject-introspection) ("gtk+-2:bin" ,gtk+-2 "bin") ("gtk+:bin" ,gtk+ "bin") - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("intltool" ,intltool) ("libtool" ,libtool) ("perl" ,perl) @@ -197,7 +197,7 @@ (synopsis "Lightweight input method framework") (description "Nimf is a lightweight, fast and extensible input method framework. This package provides a fork of the original nimf project, that -focusses especially on Korean input (Hangul, Hanja, ...).") +focuses especially on Korean input (Hangul, Hanja, ...).") (home-page "https://github.com/hamonikr/nimf/") (license license:lgpl3+))) diff --git a/gnu/packages/libevent.scm b/gnu/packages/libevent.scm index 147e25303b..098fd0b9ba 100644 --- a/gnu/packages/libevent.scm +++ b/gnu/packages/libevent.scm @@ -135,6 +135,22 @@ resolution, asynchronous file system operations, and threading primitives.") ;; details. Documentation is CC-BY 4.0 as of 1.12.0; see 'LICENSE-docs'. (license (list expat cc-by4.0)))) +(define-public libuv-for-node + ;; When upgrading Node, also upgrade this. Get the version from + ;; https://github.com/nodejs/node/blob/master/deps/uv/include/uv/version.h + (package + (inherit libuv) + (name "libuv") + (version "1.40.0") + (source (origin + (method url-fetch) + (uri (string-append "https://dist.libuv.org/dist/v" version + "/libuv-v" version ".tar.gz")) + (sha256 + (base32 + "1551k3ab27vbg9517l9b4iqbramwxdkwgpf53knas05cbfwhvab1")))) + (properties '((hidden? . #t))))) + (define-public perl-anyevent (package (name "perl-anyevent") diff --git a/gnu/packages/libffi.scm b/gnu/packages/libffi.scm index 72263696f9..b0a66c11c5 100644 --- a/gnu/packages/libffi.scm +++ b/gnu/packages/libffi.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2013, 2014, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2012, 2013, 2014, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2015, 2019 Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> ;;; Copyright © 2016, 2017, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> @@ -73,7 +73,8 @@ to call code written in another language. The libffi library really only provides the lowest, machine dependent layer of a fully featured foreign function interface. A layer must exist above libffi that handles type conversions for values passed between the two languages.") - (home-page "http://sources.redhat.com/libffi/") + (home-page "http://www.sourceware.org/libffi/") + (properties `((release-monitoring-url . ,home-page))) ;; See <https://github.com/atgreen/libffi/blob/master/LICENSE>. (license expat))) diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm index a8c2ac5c4b..39867a1994 100644 --- a/gnu/packages/libreoffice.scm +++ b/gnu/packages/libreoffice.scm @@ -714,14 +714,14 @@ text documents, vector drawings, presentations and spreadsheets.") (define-public libmwaw (package (name "libmwaw") - (version "0.3.17") + (version "0.3.18") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/libmwaw/libmwaw/libmwaw-" version "/libmwaw-" version ".tar.xz")) (sha256 - (base32 "074ipcq9w7jbd5x316dzclddgia2ydw098ph9d7p3d713pmkf5cf")))) + (base32 "03qyxp8hkcc7jcwyq0v0y2diqsvib060pg7y9zk0n07qh0b0apgw")))) (build-system gnu-build-system) (native-inputs `(("doxygen" ,doxygen) diff --git a/gnu/packages/linphone.scm b/gnu/packages/linphone.scm index 382b3a912b..deda49a4bc 100644 --- a/gnu/packages/linphone.scm +++ b/gnu/packages/linphone.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; -;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> -;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2020, 2021 Raghav Gururajan <raghavgururajan@disroot.org> +;;; Copyright © 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. @@ -23,8 +23,12 @@ #:use-module (gnu packages) #:use-module (gnu packages admin) #:use-module (gnu packages audio) + #:use-module (gnu packages avahi) #:use-module (gnu packages base) + #:use-module (gnu packages cpp) #:use-module (gnu packages compression) + #:use-module (gnu packages crypto) + #:use-module (gnu packages databases) #:use-module (gnu packages documentation) #:use-module (gnu packages gettext) #:use-module (gnu packages gl) @@ -36,7 +40,9 @@ #:use-module (gnu packages image) #:use-module (gnu packages linux) #:use-module (gnu packages ncurses) + #:use-module (gnu packages openldap) #:use-module (gnu packages perl) + #:use-module (gnu packages pkg-config) #:use-module (gnu packages pulseaudio) #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) @@ -127,46 +133,107 @@ writing, administering, and running unit tests in C.") (define-public bctoolbox (package (name "bctoolbox") - (version "0.6.0") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/bctoolbox.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "1a1i70pb4hhnykkwyhhc7fv67q556l8kprny8xzgfqpj1nby2ms6")))) + (base32 "0bfswwvvdshaahg4jd2j10f0sci8809s4khajd0m6b059zwc7y25")))) (build-system cmake-build-system) + (outputs '("out" "debug")) (arguments - '(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=OFF"))) ; Not required + `(#:configure-flags '("-DENABLE_STATIC=OFF") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-cmake + (lambda* (#:key inputs #:allow-other-keys) + ;; Fix decaf dependency (see: + ;; https://gitlab.linphone.org/BC/public/bctoolbox/-/issues/3). + (let* ((decaf (assoc-ref inputs "decaf"))) + (substitute* (find-files "." "CMakeLists.txt") + (("find_package\\(Decaf CONFIG\\)") + "set(DECAF_FOUND 1)") + (("\\$\\{DECAF_INCLUDE_DIRS\\}") + (string-append decaf "/include/decaf")) + (("\\$\\{DECAF_TARGETNAME\\}") + "decaf"))))) + (add-after 'unpack 'skip-problematic-tests + (lambda _ + ;; The following test relies on networking; disable it. + (substitute* "tester/port.c" + (("[ \t]*TEST_NO_TAG.*bctbx_addrinfo_sort_test\\)") + "")))) + (add-after 'unpack 'fix-installed-resource-directory-detection + (lambda _ + ;; There's some broken logic in tester.c that checks if CWD, or + ;; if its parent exist, and if so, sets the prefix where the test + ;; resources are looked up to; disable it (see: + ;; https://gitlab.linphone.org/BC/public/bctoolbox/-/issues/4). + (substitute* "src/tester.c" + (("if \\(file_exists\\(\".\"\\)\\)") + "if (NULL)") + (("if \\(file_exists\\(\"..\"\\)\\)") + "if (NULL)")))) + (replace 'check + (lambda _ + (with-directory-excursion "tester" + (invoke "./bctoolbox_tester"))))))) (inputs `(("bcunit" ,bcunit) + ("decaf" ,libdecaf) ("mbedtls" ,mbedtls-apache))) (synopsis "Belledonne Communications Tool Box") (description "BcToolBox is an utilities library used by Belledonne Communications software like belle-sip, mediastreamer2 and linphone.") (home-page "https://gitlab.linphone.org/BC/public/bctoolbox") - (license license:gpl2+))) + (license license:gpl3+))) (define-public belr (package (name "belr") - (version "0.1.3") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/belr.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "1fwv2cg3qy9vdc7dimcda7nqcqc1h2cdd7ikhk7ng7q4ys8m96c1")))) + (base32 "0w2canwwm0qb99whnangvaybvjzq8xg6vksqxykgr8fbx7clw03h")))) (build-system cmake-build-system) + (outputs '("out" "debug" "tester")) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=OFF"))) ; Not required + `(#:configure-flags '("-DENABLE_STATIC=OFF") + #:phases + (modify-phases %standard-phases + (delete 'check) ;moved after the install phase + (add-after 'install 'check + (lambda* (#:key outputs #:allow-other-keys) + (let* ((tester (assoc-ref outputs "tester")) + (belr_tester (string-append tester "/bin/belr_tester")) + (tester-share (string-append tester "/share/belr_tester"))) + (invoke belr_tester)))) + (add-after 'install 'move-tester + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (tester (assoc-ref outputs "tester"))) + (for-each mkdir-p + (list (string-append tester "/bin") + (string-append tester "/share"))) + (rename-file + (string-append out "/bin/belr_tester") + (string-append tester "/bin/belr_tester")) + (rename-file + (string-append out "/share/belr-tester") + ;; The detect_res_prefix procedure in bctoolbox's tester.c + ;; resolves the resource path based on the executable path and + ;; name, so have it match. + (string-append tester "/share/belr_tester")))))))) (inputs `(("bctoolbox" ,bctoolbox))) (synopsis "Belledonne Communications Language Recognition Library") @@ -180,20 +247,51 @@ IETF.") (define-public belcard (package (name "belcard") - (version "1.0.2") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/belcard.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "0iiyrll1shnbb0561pkvdqcmx9b2cdr76xpsbaqdirc3s4xzcl0k")))) + (base32 "16x2xp8d0a115132zhy1kpxkyj86ia7vrsnpjdg78fnbvmvysc8m")))) (build-system cmake-build-system) + (outputs '("out" "debug" "tester")) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=OFF"))) ; Not required + `(#:tests? #t + #:configure-flags '("-DENABLE_STATIC=OFF") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-vcard-grammar-location + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (vcard-grammar + (string-append out "/share/belr/grammars/vcard_grammar"))) + (substitute* "include/belcard/vcard_grammar.hpp" + (("define VCARD_GRAMMAR \"vcard_grammar\"") + (format #f "define VCARD_GRAMMAR ~s" vcard-grammar)))))) + (add-after 'install 'install-tester + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (tester (assoc-ref outputs "tester")) + (test-name (string-append ,name "_tester"))) + (for-each mkdir-p + (list (string-append tester "/bin") + (string-append tester "/share"))) + (rename-file (string-append out "/bin/" test-name) + (string-append tester "/bin/" test-name)) + (rename-file (string-append out "/share/" test-name) + (string-append tester "/share/" test-name))))) + (delete 'check) + (add-after 'install-tester 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (let* ((tester (assoc-ref outputs "tester")) + (belcard_tester (string-append tester + "/bin/belcard_tester"))) + (invoke belcard_tester)))))))) (inputs `(("bctoolbox" ,bctoolbox) ("belr" ,belr))) @@ -209,31 +307,26 @@ format.") (version "0.23") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/bcmatroska2.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "1a0vlk4fhh189pfzrwbc3xbc5vyx6cnxy642d1h40045jz9y4h15")))) + (base32 "1avl9w18kh4dxm3g8j0bkw39bksd7bz3nfxvyibqqnz63ds8vfi2")))) (build-system cmake-build-system) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list - "-DENABLE_STATIC=NO"))) ; Not required + `(#:tests? #f ; No test target + #:configure-flags (list "-DENABLE_STATIC=NO"))) ; Not required (synopsis "Belledonne Communications Media Container") (description "BcMatroska is a free and open standard multi-media container format. It can hold an unlimited number of video, audio, picture, or subtitle -tracks in one file. ") +tracks in one file. This project provides a convenient distribution of the +Matroska multimedia container format.") (home-page "https://gitlab.linphone.org/BC/public/bcmatroska2") - (license - (list - ;; For Core C and LibEBML2. - ;; https://www.matroska.org/node/47 - license:bsd-4 - ;; For LibMatroska2. - ;; https://www.matroska.org/node/47 - license:lgpl2.1+)))) + (license (list license:gpl2+ ;for this package (build system files) + license:bsd-4 ;for Core C and LibEBML2 + license:lgpl2.1+)))) ;for LibMatroska2 (define-public bcg729 (package @@ -243,42 +336,111 @@ tracks in one file. ") (origin (method git-fetch) (uri (git-reference - (url "git://git.linphone.org/bcg729.git") + (url "git://git.linphone.org/bcg729") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "1hal6b3w6f8y5r1wa0xzj8sj2jjndypaxyw62q50p63garp2h739")))) (build-system cmake-build-system) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO"))) ; Not required + `(#:configure-flags (list "-DENABLE_STATIC=NO" + "-DENABLE_TESTS=YES") + #:phases + (modify-phases %standard-phases + (add-before 'check 'copy-inputs + (lambda* (#:key inputs #:allow-other-keys) + (let ((test-patterns (assoc-ref inputs "test-patterns")) + (dest (string-append "test/bcg729-patterns.zip"))) + (copy-recursively test-patterns dest)))) + (replace 'check + (lambda _ + (with-directory-excursion "test" + (invoke "unzip" "bcg729-patterns.zip") + (for-each + (lambda (test-name) + (invoke "./testCampaign" "-s" test-name)) + (list "fixedCodebookSearch" + "postProcessing" + "adaptativeCodebookSearch" + "computeLP" + "computeAdaptativeCodebookGain" + "postFilter" + "decoder" + "LPSynthesisFilter" + "decodeLSP" + ;; "encoder" + ;; "LSPQuantization" + "preProcessing" + "decodeFixedCodeVector" + "CNGdecoder" + ;; "LP2LSPConversion" + "gainQuantization" + "findOpenLoopPitchDelay" + "decodeGains" + "computeWeightedSpeech" + "interpolateqLSPAndConvert2LP" + "decodeAdaptativeCodeVector")))))))) + (native-inputs + `(("perl" ,perl) + ("test-patterns" + ,(origin + (method url-fetch) + (uri (string-append "http://www.belledonne-communications.com/" + "bc-downloads/bcg729-patterns.zip")) + (sha256 + (base32 "1kivarhh3izrl9sg0szs6x6pbq2ap0y6xsraw0gbgspi4gnfihrh")))) + ("unzip" ,unzip))) (synopsis "Belledonne Communications G729 Codec") (description "BcG729 is an implementation of both encoder and decoder of the ITU G729 speech codec. The library written in C 99 is fully portable and can be executed on many platforms including both ARM and x86 processors. It supports concurrent channels encoding and decoding for multi call application such as conferencing.") - (home-page "https://gitlab.linphone.org/BC/public/belcard") - (license license:gpl2+))) + (home-page "https://linphone.org/technical-corner/bcg729") + (license license:gpl3+))) (define-public ortp (package (name "ortp") - (version "1.0.2") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/ortp.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "016qg0lmdgmqh2kv19w9qhi4kkiyi5h1xp35g2s65b1j8ccm25d5")))) + (base32 "1r1kvjzyfvkf66in4p51wi87balzg3sw3aq6r4xr609mz86spi5m")))) (build-system cmake-build-system) + (outputs '("out""tester" + "doc")) ;1.5 MiB of HTML doc (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO"))) ; Not required + `(#:tests? #f ;requires networking + #:configure-flags (list "-DENABLE_STATIC=NO" + "-DENABLE_TESTS=YES") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-version-strings + ;; See: https://gitlab.linphone.org/BC/public/ortp/-/issues/5. + (lambda _ + (substitute* "CMakeLists.txt" + (("VERSION [0-9]+\\.[0-9]+\\.[0-9]+") + (string-append "VERSION " ,version)) + (("\\$\\{ORTP_DOC_VERSION\\}") + ,version)))) + (add-after 'install 'separate-outputs + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (assoc-ref outputs "doc")) + (doc-src (string-append out "/share/doc/ortp-" ,version)) + (doc-dest (string-append doc "/share/doc/ortp-" ,version)) + (tester (assoc-ref outputs "tester"))) + (for-each mkdir-p (list (string-append doc "/share/doc") + (string-append tester "/bin"))) + (rename-file doc-src doc-dest) + (rename-file (string-append out "/bin") + (string-append tester "/bin")))))))) (native-inputs `(("dot" ,graphviz) ("doxygen" ,doxygen))) @@ -287,26 +449,28 @@ such as conferencing.") (synopsis "Belledonne Communications RTP Library") (description "oRTP is a C library implementing the RTP protocol. It implements the RFC 3550 standard.") - (home-page "https://gitlab.linphone.org/BC/public/ortp") - (license license:gpl2+))) + (home-page "https://linphone.org/technical-corner/ortp") + (license license:gpl3+))) (define-public bzrtp (package (name "bzrtp") - (version "1.0.6") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/bzrtp") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "12y0kkh90pixaaxfyx26ca2brhy6nw57fsypp6vh8jk1illv0j5z")))) + (base32 "1yjmsbqmymzl4r7sba6w4a2yld8m6hzafr6jf7sj0syhwpnc3zv6")))) (build-system cmake-build-system) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO"))) ; Not required + `(#:configure-flags + (list + "-DENABLE_STATIC=NO" + "-DENABLE_TESTS=YES"))) (inputs `(("bctoolbox" ,bctoolbox) ("sqlite3" ,sqlite) @@ -316,100 +480,171 @@ implements the RFC 3550 standard.") written in C. It is fully portable and can be executed on many platforms including both ARM and x86.") (home-page "https://gitlab.linphone.org/BC/public/bzrtp") - (license license:gpl2+))) + (license license:gpl3+))) (define-public belle-sip (package (name "belle-sip") - (version "1.6.3") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/belle-sip.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "0s55kggmgxap54dkw5856bgk4xg7yvbzialpxnjm0zhpic3hff1z")))) + (base32 "1kknnlczq7dpqaj1dwxvy092dzrqjy11ndkv90rqwmdryigkjk6z")))) (build-system cmake-build-system) + (outputs '("out" "tester")) (arguments - `(#:tests? #f ; Requires network access - #:configure-flags - (list "-DENABLE_STATIC=NO") ; Not required + `(#:configure-flags (list "-DENABLE_STATIC=NO" + "-DENABLE_MDNS=ON") #:phases (modify-phases %standard-phases (add-after 'unpack 'patch - (lambda _ + (lambda* (#:key inputs #:allow-other-keys) + ;; Fix mDNS dependency. + (let* ((avahi (assoc-ref inputs "avahi"))) + (substitute* (find-files "." "CMakeLists.txt") + (("find_package\\(DNSSD REQUIRED\\)") + "set(DNSSD_FOUND 1)") + (("\\$\\{DNSSD_INCLUDE_DIRS\\}") + (string-append avahi "/include/avahi-compat-libdns_sd")) + (("\\$\\{DNSSD_LIBRARIES\\}") + "dns_sd"))) (substitute* "src/CMakeLists.txt" ;; ANTLR would use multithreaded DFA generation otherwise, ;; which would not be reproducible. - (("-Xmultithreaded ") "")) - #t))))) + (("-Xmultithreaded ") "")))) + (delete 'check) ;move after install + (add-after 'install 'separate-outputs + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (tester (assoc-ref outputs "tester")) + (tester-name "belle_sip_tester")) + (for-each mkdir-p (list (string-append tester "/bin") + (string-append tester "/share"))) + (rename-file (string-append out "/bin") + (string-append tester "/bin")) + (rename-file (string-append out "/share/" tester-name) + (string-append tester "/share/" tester-name))))) + (add-after 'separate-outputs 'check + (lambda* (#:key outputs #:allow-other-keys) + (let ((tester (string-append (assoc-ref outputs "tester") + "/bin/belle_sip_tester"))) + (for-each (lambda (suite-name) + (invoke tester "--suite" suite-name)) + (list "Object inheritance" + "SIP URI" + "FAST SIP URI" + "FAST SIP URI 2" + "Generic uri" + "Headers" + "Core" + "SDP" + ;;"Resolver" + "Message" + "Authentication helper" + ;;"Register" + ;;"Dialog" + "Refresher" + ;;"HTTP stack" + "Object")))))))) (inputs - `(("antlr3" ,antlr3-3.3) - ("antlr3c" ,libantlr3c) + `(("avahi" ,avahi) ("bctoolbox" ,bctoolbox) - ("java" ,icedtea) ("zlib" ,zlib))) (synopsis "Belledonne Communications SIP Library") (description "Belle-sip is a modern library implementing SIP transport, transaction and dialog layers. It is written in C, with an object-oriented API. It also comprises a simple HTTP/HTTPS client implementation.") - (home-page "https://gitlab.linphone.org/BC/public/belle-sip") - (license license:gpl2+))) + (home-page "https://linphone.org/technical-corner/belle-sip") + (license license:gpl3+))) (define-public mediastreamer2 (package (name "mediastreamer2") - (version "2.16.1") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" - "mediastreamer/mediastreamer-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/mediastreamer2.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "0whpqr69wz0pnzvragkpfblxhd0rds8k06c3mw5a0ag216a1yd9k")) - (patches (search-patches "mediastreamer2-srtp2.patch")))) + (base32 "0989h3d0h7qrx4kjx8gg09j8c5hvvi3h8qi1iq1dqbppwbaxbz8c")))) (outputs '("out" "doc" "tester")) (build-system cmake-build-system) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO" ; Not required - "-DENABLE_STRICT=NO" ; Would otherwise treat warnings as err - "-DENABLE_BV16=NO" ; Not available - "-DCMAKE_C_FLAGS=-DMS2_GIT_VERSION=\\\"unknown\\\"" - "-DCMAKE_CXX_FLAGS=-DMS2_GIT_VERSION=\\\"unknown\\\"") + `(#:configure-flags (list "-DENABLE_STATIC=NO" + "-DENABLE_PCAP=YES" + ;; Do not fail on compile warnings. + "-DENABLE_STRICT=NO" + "-DENABLE_PORTAUDIO=YES" + "-DENABLE_G729B_CNG=YES") #:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-version + (lambda _ + (substitute* "CMakeLists.txt" + (("VERSION [0-9]+\\.[0-9]+\\.[0-9]+") + (string-append "VERSION " ,version))))) + (add-after 'unpack 'patch-source + (lambda _ + (substitute* "src/otherfilters/mspcapfileplayer.c" + (("O_BINARY") "L_INCR")))) + (add-before 'check 'pre-check + (lambda _ + ;; Tests require a running X server. + (system "Xvfb :1 +extension GLX &") + (setenv "DISPLAY" ":1") + ;; Tests write to $HOME. + (setenv "HOME" (getenv "TEMP")))) + (delete 'check) ;move after install (add-after 'install 'separate-outputs (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) - (doc (assoc-ref outputs "doc")) (tester (assoc-ref outputs "tester")) - (tester-name (string-append ,name "_tester"))) - ;; Copy the tester executable. - (mkdir-p (string-append tester "/bin")) + (tester-name (string-append ,name "_tester")) + (doc (assoc-ref outputs "doc")) + (doc-name (string-append ,name "-" ,version))) + (for-each mkdir-p + (list (string-append tester "/bin") + (string-append tester "/share") + (string-append doc "/share/doc"))) + ;; Move the tester executable. (rename-file (string-append out "/bin/" tester-name) (string-append tester "/bin/" tester-name)) - ;; Copy the tester data files. - (copy-recursively (string-append out "/share/" tester-name) - (string-append tester "/share/" tester-name)) - (delete-file-recursively (string-append out "/share/" - tester-name)) - ;; Copy the HTML documentation. - (copy-recursively (string-append out "/share/doc/" - ,name "-" ,version "/html") - (string-append doc "/share/doc/" - ,name "-" ,version "/html")) - (delete-file-recursively (string-append out "/share/doc/" - ,name "-" ,version - "/html")) - #t)))))) + ;; Move the tester data files. + (rename-file (string-append out "/share/" tester-name) + (string-append tester "/share/" tester-name)) + ;; Move the HTML documentation. + (rename-file (string-append out "/share/doc/" doc-name) + (string-append doc "/share/doc/" doc-name))))) + (add-after 'separate-outputs 'check + (lambda* (#:key outputs #:allow-other-keys) + (let ((tester (string-append (assoc-ref outputs "tester") + "/bin/mediastreamer2_tester"))) + (for-each (lambda (suite-name) + (invoke tester "--suite" suite-name)) + ;; Some tests fail, due to requiring access to the + ;; sound card or the network. + (list "Basic Audio" + ;; "Sound Card" + ;; "AdaptiveAlgorithm" + ;; "AudioStream" + ;; "VideoStream" + "H26x Tools" + "Framework" + ;; "Player" + "TextStream")))))))) (native-inputs `(("dot" ,graphviz) ("doxygen" ,doxygen) - ("python" ,python))) + ("python" ,python-wrapper) + ("xorg-server" ,xorg-server-for-tests))) (inputs `(("alsa" ,alsa-lib) ("bcg729" ,bcg729) @@ -442,101 +677,120 @@ API. It also comprises a simple HTTP/HTTPS client implementation.") for telephony applications. This media processing and streaming toolkit is responsible for receiving and sending all multimedia streams in Linphone, including media capture, encoding and decoding, and rendering.") - (home-page "https://gitlab.linphone.org/BC/public/mediastreamer2") - (license license:gpl2+))) + (home-page "https://linphone.org/technical-corner/mediastreamer2") + (license license:gpl3+))) + +(define-public lime + (package + (name "lime") + (version "4.4.34") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/lime.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "14jg1zisjbzflw3scfqdbwy48wq3cp93l867vigb8l40lkc6n26z")))) + (build-system cmake-build-system) + (outputs '("out" "doc")) + (arguments + `(#:configure-flags (list "-DENABLE_STATIC=NO" + "-DENABLE_C_INTERFACE=YES") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda _ + ;; Disable tests that require networking. + (substitute* "tester/CMakeLists.txt" + (("add_test\\(?.*\"Hello World\"\\)") "") + (("add_test\\(?.*\"lime\"\\)") "") + (("add_test\\(?.*\"FFI\"\\)") "")))) + (add-after 'build 'build-doc + (lambda _ + (invoke "make" "doc"))) + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((doc (assoc-ref outputs "doc")) + (dir (string-append doc "/share/doc")) + (dest (string-append dir "/" ,name "-" ,version))) + (mkdir-p dest) + (copy-recursively "doc" dest))))))) + (native-inputs + `(("dot" ,graphviz) + ("doxygen" ,doxygen))) + (inputs + `(("bctoolbox" ,bctoolbox) + ("belle-sip" ,belle-sip) + ("soci" ,soci))) + (synopsis "Belledonne Communications Encryption Library") + (description "LIME is an encryption library for one-to-one and group +instant messaging, allowing users to exchange messages privately and +asynchronously. It supports multiple devices per user and multiple users per +device.") + (home-page "https://linphone.org/technical-corner/lime") + (license license:gpl3+))) (define-public liblinphone (package (name "liblinphone") - (version "3.12.0") + (version "4.4.34") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/linphone" - "/linphone-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/liblinphone.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "0phhkx55xdyg28d4wn8l8q4yvsmdgzmjiw584d4s190sq1azm91x")))) - (outputs '("out" "doc" "tester")) + (base32 "1lwabr93jw24y04pdqnw9dgg8jb3lzfplyx19f83jgp9dj8kmfq9")))) + (outputs '("out" "tester")) (build-system cmake-build-system) (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list (string-append "-DGTK2_GDKCONFIG_INCLUDE_DIR=" - (string-append (assoc-ref %build-inputs "gtk2") - "/lib/gtk-2.0/include")) - (string-append "-DGTK2_GLIBCONFIG_INCLUDE_DIR=" - (string-append (assoc-ref %build-inputs "glib") - "/lib/glib-2.0/include")) - "-DENABLE_STATIC=NO" ; Not required - "-DENABLE_STRICT=NO" - "-DENABLE_GTK_UI=YES") ; for legacy UI - #:imported-modules (,@%cmake-build-system-modules - (guix build glib-or-gtk-build-system)) - #:modules ((guix build cmake-build-system) - ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:) - (guix build utils)) + `(#:tests? #f ; Tests require networking + #:configure-flags (list "-DENABLE_STATIC=NO" + "-DENABLE_DOC=NO" ;requires unpackaged javasphinx + "-DENABLE_LDAP=YES") #:phases (modify-phases %standard-phases - (add-after 'unpack 'patch - (lambda _ - (substitute* "gtk/main.c" - (("#include \"liblinphone_gitversion.h\"") - "")) - #t)) (add-after 'install 'separate-outputs (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) - (doc (assoc-ref outputs "doc")) (tester (assoc-ref outputs "tester")) (tester-name (string-append ,name "_tester"))) - ;; Copy the tester executable. - (mkdir-p (string-append tester "/bin")) + (for-each mkdir-p + (list (string-append tester "/bin") + (string-append tester "/share"))) (rename-file (string-append out "/bin/" tester-name) (string-append tester "/bin/" tester-name)) - ;; Copy the tester data files. - (mkdir-p (string-append tester "/share/")) + (rename-file (string-append out "/bin/groupchat_benchmark") + (string-append tester "/bin/groupchat_benchmark")) (rename-file (string-append out "/share/" tester-name) - (string-append tester "/share/" tester-name)) - ;; Copy the HTML and XML documentation. - (copy-recursively - (string-append out "/share/doc/linphone-" ,version) - (string-append doc "/share/doc/" ,name "-" ,version)) - (delete-file-recursively - (string-append out "/share/doc/linphone-" ,version)) - #t))) - (add-after 'install 'install-man-pages - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (man (string-append out "/share/man/man1"))) - (for-each (lambda (file) - (install-file file man)) - (find-files ".." ".*.1$")) - #t))) - (add-after 'separate-outputs 'glib-or-gtk-compile-schemas - (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-compile-schemas)) - (add-after 'glib-or-gtk-compile-schemas 'glib-or-gtk-wrap - (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap))))) + (string-append tester "/share/" tester-name)))))))) (native-inputs - `(("gettext" ,gettext-minimal) - ("udev" ,eudev) ;for libudev.h - ;; For generating the C++ wrappers. - ("dot" ,graphviz) + `(("dot" ,graphviz) ("doxygen" ,doxygen) - ("python" ,python) + ("gettext" ,gettext-minimal) + ("perl" ,perl) + ("python" ,python-wrapper) ("pystache" ,python-pystache) - ("six" ,python-six))) + ("six" ,python-six) + ("udev" ,eudev))) (inputs `(("bctoolbox" ,bctoolbox) ("belcard" ,belcard) ("bellesip" ,belle-sip) + ("belr" ,belr) ("bzrtp" ,bzrtp) ("iconv" ,libiconv) - ("glib" ,glib) - ("gtk2" ,gtk+-2) + ("ldap" ,openldap) + ("libxsd" ,xsd) + ("lime" ,lime) ("mediastreamer2" ,mediastreamer2) ("notify" ,libnotify) ("ortp" ,ortp) + ("soci" ,soci) ("sqlite" ,sqlite) ("xml2" ,libxml2) ("zlib" ,zlib))) @@ -546,58 +800,66 @@ all calling and instant messaging features into an unified easy-to-use API. It is the cross-platform VoIP library on which the Linphone application is based on, and that anyone can use to add audio and video calls or instant messaging capabilities to an application.") - (home-page "https://gitlab.linphone.org/BC/public/liblinphone") - (license license:gpl2+))) + (home-page "https://linphone.org/technical-corner/liblinphone") + (license license:gpl3+))) -(define-public linphoneqt +(define-public linphone-desktop (package - (name "linphoneqt") - (version "4.1.1") + (name "linphone-desktop") + (version "4.2.5") (source (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/" name - "/" name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/linphone-desktop") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "1g2zrr9li0g1hgs6vys06vr98h5dx36z22hx7a6ry231536c002a")) - (patches (search-patches "linphoneqt-tabbutton.patch")))) + (base32 "1gq4l9p21rbrcksa7fbkzn9fzbbynqmn6ni6lhnvzk359sb1xvbz")) + (patches (search-patches "linphone-desktop-without-sdk.patch")))) (build-system qt-build-system) + (outputs '("out" "debug")) (arguments `(#:tests? #f ; No test target + #:configure-flags (list "-DENABLE_UPDATE_CHECK=NO" + "-DENABLE_DAEMON=YES" + "-DENABLE_CONSOLE_UI=YES") #:phases (modify-phases %standard-phases - (add-after 'unpack 'fix-cmake-error - (lambda _ - ;; This is fixed in commit efed2fd8 of the master branch. - (substitute* "CMakeLists.txt" - (("js)\\$\"") - "js$\"")) - #t)) - (add-after 'unpack 'set-version-string + (add-after 'unpack 'pre-configure (lambda _ - (substitute* "src/app/AppController.cpp" - (("LINPHONE_QT_GIT_VERSION") - (format #f "~s" ,version))) - #t)) - (add-after 'install 'extend-shared-resources - ;; Not using the FHS exposes an issue where the client refers to - ;; its own "share" directory, which lacks sound files installed by - ;; liblinphone. + (make-file-writable "linphone-app/linphoneqt_version.cmake") + (substitute* "linphone-app/linphoneqt_version.cmake" + (("\\$\\{GUIX-SET-VERSION\\}") ,version)))) + (add-after 'install 'post-install (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((liblinphone (assoc-ref inputs "linphone")) - (out (assoc-ref outputs "out"))) + (let* ((out (assoc-ref outputs "out")) + (liblinphone (assoc-ref inputs "liblinphone")) + (grammar-dest (string-append out "/share/belr/grammars"))) + ;; Remove unnecessary Qt configuration file. + (delete-file (string-append out "/bin/qt.conf")) + ;; Not using the FHS exposes an issue where the client + ;; refers to its own directories, which lacks files + ;; installed by the dependencies. + (symlink (string-append liblinphone "/lib") + (string-append out "/lib")) (symlink (string-append liblinphone "/share/sounds") (string-append out "/share/sounds")) - #t)))))) + (symlink (string-append liblinphone "/share/linphone/rootca.pem") + (string-append out "/share/linphone/rootca.pem")) + (mkdir-p (dirname grammar-dest)) + (symlink (string-append liblinphone "/share/belr/grammars") + grammar-dest))))))) (native-inputs - `(("qttools" ,qttools))) + `(("pkg-config" ,pkg-config) + ("qttools" ,qttools))) (inputs `(("bctoolbox" ,bctoolbox) ("belcard" ,belcard) - ("bellesip" ,belle-sip) - ("linphone" ,liblinphone) + ("belr" ,belr) + ("liblinphone" ,liblinphone) ("mediastreamer2" ,mediastreamer2) + ("ortp" ,ortp) ("qtbase" ,qtbase) ("qtdeclarative" ,qtdeclarative) ("qtgraphicaleffects" ,qtgraphicaleffects) @@ -622,128 +884,155 @@ and video calls or instant messaging capabilities to an application.") @item Audio codecs: opus, speex, g711, g729, gsm, iLBC, g722, SILK, etc. @item Video codecs: VP8, H.264 and H.265 with resolutions up to 1080P, MPEG4 @end itemize") - (home-page "https://gitlab.linphone.org/BC/public/linphone-desktop") - (license license:gpl2+))) + (home-page "https://linphone.org/technical-corner/linphone") + (license license:gpl3+))) + +(define-public linphoneqt + (deprecated-package "linphoneqt" linphone-desktop)) (define-public msopenh264 - (package - (name "msopenh264") - (version "1.2.1") - (source - (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/plugins/" - name "/" name "-" version ".tar.gz")) - (sha256 - (base32 "0rdxgazm52560g52pp6mp3mwx6j1z3h2zyizzfycp8y8zi92fqm8")) - (patches - (list - ;; For support for OpenH264 version >= 2. - (origin - (method url-fetch) - (uri - (string-append "https://gitlab.linphone.org/BC/public/msopenh264/" - "commit/493d147d28c9a0f788ba4e50b47a1ce7b18bf326" - ".diff")) - (file-name "msopenh264-openh264.patch") - (sha256 - (base32 - "0mmd7nz5n9ian4rcwn200nldmy5j0dpdrna7r32rqnaw82bx3kdb"))))))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO"))) ; Not required - (inputs - `(("mediastreamer2" ,mediastreamer2) - ("openh264" ,openh264) - ("ortp" ,ortp))) - (synopsis "Media Streamer H.264 Codec") - (description "MsOpenH264 is an H.264 encoder/decoder plugin for -mediastreamer2 based on the openh264 library.") - (home-page "https://gitlab.linphone.org/BC/public/msopenh264") - (license license:gpl2+))) + (let ((commit "88697cc95140017760d6da408cb0efdc5e86e40a") + (revision "0")) + (package + (name "msopenh264") + (version (git-version "1.2.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/msopenh264.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "10y3b6s934f2wbsf60b3p0g6hffizjqrj5in8l4sida2fjdxlwwy")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; No test target + #:configure-flags + (list "-DENABLE_STATIC=NO"))) ; Not required + (inputs + `(("bctoolbox" ,bctoolbox) + ("mediastreamer2" ,mediastreamer2) + ("openh264" ,openh264) + ("ortp" ,ortp))) + (synopsis "Media Streamer H.264 Codec") + (description "MsOpenH264 is an H.264 encoder/decoder plugin for + mediastreamer2 based on the openh264 library.") + (home-page "https://gitlab.linphone.org/BC/public/msopenh264") + (license license:gpl2+)))) (define-public mssilk - (package - (name "mssilk") - (version "1.1.1") - (source - (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/plugins/" - name "/" name "-" version ".tar.gz")) - (sha256 - (base32 "07ip0vd29d1n98lnqs5wpimcsmpm65yl7g5vk4hbqghcbsjw94lj")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO"))) ; Not required - (inputs - `(("mediastreamer2" ,mediastreamer2) - ("ortp" ,ortp))) - (synopsis "Media Streamer SILK Codec") - (description "MSSILK is a plugin of MediaStreamer, adding support for AMR + (let ((commit "dd0f31ee795faa7ea89e601b072dae4cd1df7e3f") + (revision "0")) + (package + (name "mssilk") + (version (git-version "1.1.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/mssilk.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1dann5fnzqp6wjlwc6bl2k9b6rvn6bznqb3qsi1kgv9dnq44cbr0")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; No test target + #:configure-flags + (list "-DENABLE_STATIC=NO"))) ; Not required + (inputs + `(("bctoolbox" ,bctoolbox) + ("mediastreamer2" ,mediastreamer2) + ("ortp" ,ortp))) + (synopsis "Media Streamer SILK Codec") + (description "MSSILK is a plugin of MediaStreamer, adding support for AMR codec. It is based on the Skype's SILK implementation.") - (home-page "https://gitlab.linphone.org/BC/public/mssilk") - (license license:gpl2+))) + (home-page "https://gitlab.linphone.org/BC/public/mssilk") + (license license:gpl2+)))) (define-public mswebrtc - (package - (name "mswebrtc") - (version "1.1.1") - (source - (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/plugins/" - name "/" name "-" version ".tar.gz")) - (sha256 - (base32 "1wj28hl9myhshqmn64xg0jf07aw75gmnilb5rff6rcbdxim87mqr")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list - "-DENABLE_STATIC=NO"))) ; Not required - (inputs - `(("bctoolbox" ,bctoolbox) - ("mediastreamer2" ,mediastreamer2) - ("ortp" ,ortp))) - (synopsis "Media Streamer WebRTC Codec") - (description "MSWebRTC is a plugin of MediaStreamer, adding support for + (let ((commit "946ca706733f36a6b4923f04e569531125462d1d") + (revision "0")) + (package + (name "mswebrtc") + (version (git-version "1.1.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/mswebrtc") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1pfg9m6bpbv0f53nx72rdxhlyriax9pg4yj0gpwq8ha6lqnpwg1x")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; No test target + #:configure-flags + (list + "-DENABLE_STATIC=NO") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'copy-inputs + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((webrtc-from (assoc-ref inputs "webrtc")) + (webrtc-to (string-append (getcwd) "/webrtc"))) + (copy-recursively webrtc-from webrtc-to)) + #t))))) + (native-inputs + `(("webrtc" + ,(origin + (method git-fetch) + (uri + (git-reference + (url "https://gitlab.linphone.org/BC/public/external/webrtc") + (commit "583acd27665cfadef8ab03eb85a768d308bd29dd"))) + (file-name + (git-file-name "webrtc-for-mswebrtc" version)) + (sha256 + (base32 + "1maqychrgwy0z4zypa03qp726l2finw64z6cymdzhd58ql3p1lvm")))) + ("python" ,python-wrapper))) + (inputs + `(("bctoolbox" ,bctoolbox) + ("mediastreamer2" ,mediastreamer2) + ("ortp" ,ortp))) + (synopsis "Media Streamer WebRTC Codec") + (description "MSWebRTC is a plugin of MediaStreamer, adding support for WebRTC codec. It includes features from WebRTC, such as, iSAC and AECM.") - (home-page "https://gitlab.linphone.org/BC/public/mswebrtc") - (license license:gpl2+))) + (home-page "https://gitlab.linphone.org/BC/public/mswebrtc") + (license license:gpl2+)))) (define-public msamr - (package - (name "msamr") - (version "1.1.3") - (source - (origin - (method url-fetch) - (uri - (string-append "https://www.linphone.org/releases/sources/plugins/" - name "/" name "-" version ".tar.gz")) - (sha256 - (base32 "16c9f3z4wnj73k7y8gb0fgpr4axsm7b5zrbjvy8vsgz9gyg3agm5")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ; No test target - #:configure-flags - (list "-DENABLE_STATIC=NO" ; Not required - "-DENABLE_WIDEBAND=YES"))) - (inputs - `(("mediastreamer2" ,mediastreamer2) - ("opencoreamr" ,opencore-amr) - ("ortp" ,ortp) - ("voamrwbenc" ,vo-amrwbenc))) - (synopsis "Media Streamer AMR Codec") - (description "MSAMR is a plugin of MediaStreamer, adding support for AMR + (let ((commit "5ab5c098299107048dfcbfc741f7392faef167bd") + (revision "0")) + (package + (name "msamr") + (version (git-version "1.1.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.linphone.org/BC/public/msamr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1g79lw1qi1mlw3v1b0cixmqiwjql81gz9naakb15n8pvaag9aaqm")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; No test target + #:configure-flags + (list "-DENABLE_STATIC=NO" ; Not required + "-DENABLE_WIDEBAND=YES"))) + (inputs + `(("bctoolbox" ,bctoolbox) + ("mediastreamer2" ,mediastreamer2) + ("opencoreamr" ,opencore-amr) + ("ortp" ,ortp) + ("voamrwbenc" ,vo-amrwbenc))) + (synopsis "Media Streamer AMR Codec") + (description "MSAMR is a plugin of MediaStreamer, adding support for AMR codec. It is based on the opencore-amr implementation.") - (home-page "https://gitlab.linphone.org/BC/public/msamr") - (license license:gpl3+))) + (home-page "https://gitlab.linphone.org/BC/public/msamr") + (license license:gpl3+)))) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 3647c91101..4286c912b0 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -354,7 +354,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." ;; The current "stable" kernels. That is, the most recently released major ;; versions that are still supported upstream. -(define-public linux-libre-5.11-version "5.11.8") +(define-public linux-libre-5.11-version "5.11.14") (define deblob-scripts-5.11 (linux-libre-deblob-scripts linux-libre-5.11-version @@ -362,7 +362,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0yvr80g200hdryz54gdnzj4fl38pf7g4qbgj475rhcfwixhp1j7n"))) (define-public linux-libre-5.11-pristine-source (let ((version linux-libre-5.11-version) - (hash (base32 "17y8q0gy4b00rms6pgglzmzz4msvmn2frqvln9vac39m78k3kyci"))) + (hash (base32 "1ia4wzh44lkvrbvnhdnnjcdyvqx2ihpbwkih7wqm1n5prhq38ql7"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.11))) @@ -370,7 +370,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." ;; The "longterm" kernels — the older releases with long-term upstream support. ;; Here are the support timelines: ;; <https://www.kernel.org/category/releases.html> -(define-public linux-libre-5.10-version "5.10.25") +(define-public linux-libre-5.10-version "5.10.30") (define deblob-scripts-5.10 (linux-libre-deblob-scripts linux-libre-5.10-version @@ -378,12 +378,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0hh27ccqimagr3aij7ygwikxw66y63sqwd0xlf49bhpjd090r9a7"))) (define-public linux-libre-5.10-pristine-source (let ((version linux-libre-5.10-version) - (hash (base32 "1p8s8vp5b6vjmvhj3plm0pr0d9qp5lrwm6l40a4bjr1vk9myf2lk"))) + (hash (base32 "0h06lavcbbj9a4dfzca9sprghiq9z33q8i4gh3n2912wmjsnj0nl"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.10))) -(define-public linux-libre-5.4-version "5.4.107") +(define-public linux-libre-5.4-version "5.4.112") (define deblob-scripts-5.4 (linux-libre-deblob-scripts linux-libre-5.4-version @@ -391,12 +391,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1xghbbnaisjd0k1klbyn1p7r6r4x5a1bpmkm56a3gh2zvw4s7mj8"))) (define-public linux-libre-5.4-pristine-source (let ((version linux-libre-5.4-version) - (hash (base32 "0q3m4d96d0hhhzn71aarh314i4cx9h3qvhhi5hrmcsrnbxafyg0w"))) + (hash (base32 "190cq97pm0r6s115ay66rjra7fnyn7m4rak89inwhm223931sdmq"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.4))) -(define-public linux-libre-4.19-version "4.19.182") +(define-public linux-libre-4.19-version "4.19.187") (define deblob-scripts-4.19 (linux-libre-deblob-scripts linux-libre-4.19-version @@ -404,12 +404,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1jiaw0as1ippkrjdpd52657w5mz9qczg3y2hlra7m9k0xawwiqlf"))) (define-public linux-libre-4.19-pristine-source (let ((version linux-libre-4.19-version) - (hash (base32 "0r93mgvjypmj0glg0912vfq9zbagi59w4d88ynz5gm8sl05pbnq5"))) + (hash (base32 "1hx0jw11xmj57v9a8w34729vgrandaing2n9qkhx5dq4mhy04k50"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.19))) -(define-public linux-libre-4.14-version "4.14.226") +(define-public linux-libre-4.14-version "4.14.230") (define deblob-scripts-4.14 (linux-libre-deblob-scripts linux-libre-4.14-version @@ -417,12 +417,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1qij18inijj6c3ma8hv98yjagnzxdxyn134da9fd23ky8q6hbvky"))) (define-public linux-libre-4.14-pristine-source (let ((version linux-libre-4.14-version) - (hash (base32 "09llp8jl5xgxxzj0f2sfx32annwyz82k1zmgd26zy90lz0d09p3s"))) + (hash (base32 "1gn5cs1ss4bfsnnv0b2s4g5ibiigpzsx0i3qfswchdbxvdag75cw"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.14))) -(define-public linux-libre-4.9-version "4.9.262") +(define-public linux-libre-4.9-version "4.9.266") (define deblob-scripts-4.9 (linux-libre-deblob-scripts linux-libre-4.9-version @@ -430,12 +430,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0fxajshb75siq39lj5h8xvhdj8lcmddkslwlyj65rhlwk6g2r4b2"))) (define-public linux-libre-4.9-pristine-source (let ((version linux-libre-4.9-version) - (hash (base32 "1zq77x9zf1wbk8n17rnblm5lfwlkin1xnxb3sxirwb9njm07cbmj"))) + (hash (base32 "0qzigcslfp714vaswwlw93xj0h2f8laikppw6krrhfnh5wwrp5dr"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.9))) -(define-public linux-libre-4.4-version "4.4.262") +(define-public linux-libre-4.4-version "4.4.266") (define deblob-scripts-4.4 (linux-libre-deblob-scripts linux-libre-4.4-version @@ -443,7 +443,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0hhin1jpfkd6nwrb6xqxjzl3hdxy4pn8a15hy2d3d83yw6pflbsf"))) (define-public linux-libre-4.4-pristine-source (let ((version linux-libre-4.4-version) - (hash (base32 "0yz9qi4i46ndshxmb99kvv7lk6cbb09y7bzagq7sgvqaj4lwaw6j"))) + (hash (base32 "00x2dmjiiv9zpc0vih9xqmf78kynqzj9q9v1chc2q2hcjpqfj31c"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.4))) @@ -1167,8 +1167,8 @@ and should be used with caution, especially on untested models.") (license license:gpl3+))) ; see README.md (no licence headers) (define-public rtl8812au-aircrack-ng-linux-module - (let ((commit "62cb003043e4daeeba0b8805137fa604af450ed2") - (revision "3")) + (let ((commit "059e06a51be025fde5b2bec6565540b3d9981b0b") + (revision "4")) (package (name "rtl8812au-aircrack-ng-linux-module") (version (git-version "5.6.4.2" revision commit)) @@ -1180,7 +1180,7 @@ and should be used with caution, especially on untested models.") (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "1kragxkjprjy7nl9h2rd0mwcry1ygw07zb1p2qkj7cmz0r2035yz")) + (base32 "0h6l2r3yj7j9zf11dw0zcdyn50ajnjw8yvv86dzlfj80dn75n98f")) (modules '((guix build utils))) (snippet '(begin @@ -3535,6 +3535,93 @@ subsystem. @code{uinput} allows userspace programs to create and handle input devices that can inject events directly into the input subsystem.") (license license:bsd-3))) +(define-public interception-tools + (package + (name "interception-tools") + (version "0.6.4") + (home-page "https://gitlab.com/interception/linux/tools") + (source (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "121jy40ynkbzlqnx7g0dqwvkb7dm2ahcy6vwrz6ylsyd0jmi6s5a")))) + (build-system cmake-build-system) + (inputs + `(("boost" ,boost) + ("libevdev" ,libevdev) + ("libudev" ,eudev) + ("yaml-cpp" ,yaml-cpp))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-libevdev-path + (lambda* (#:key inputs #:allow-other-keys) + (let ((libevdev (assoc-ref inputs "libevdev"))) + (substitute* "CMakeLists.txt" + (("/usr/include/libevdev-1.0") + (string-append libevdev "/include/libevdev-1.0"))) + #t)))) + ;; No tests are included. + #:tests? #f)) + (synopsis "Utilities for operating on input events of evdev devices") + (description + "Interception Tools provides a composable infrastructure on top of +@code{libudev} and @code{libevdev}. The following utilities are provided: + +@itemize +@item @command{udevmon} --- monitor input devices for launching tasks +@item @command{intercept} --- redirect device input events to stdout +@item @command{uinput} --- redirect device input events from stding to virtual device +@item @command{mux} --- mux streams of input events +@end itemize") + ;; Dual-licensed under GPLv3+ or "something else" on request, per + ;; 'README.md'. + (license license:gpl3+))) + +(define-public interception-dual-function-keys + (package + (name "interception-dual-function-keys") + (version "1.3.0") + (home-page "https://gitlab.com/interception/linux/plugins/dual-function-keys") + (source (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1gvhkmwzl5fyyc7k8rc4rf2b9mzh05wa8wcybf9hz2x1mqkc7lmz")))) + (build-system gnu-build-system) + (inputs + `(("libevdev" ,libevdev) + ("yaml-cpp" ,yaml-cpp))) + (arguments + `(#:make-flags (list "CC=gcc" "CXX=g++" + (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-libevdev-path + (lambda* (#:key inputs #:allow-other-keys) + (let ((libevdev (assoc-ref inputs "libevdev"))) + (substitute* "config.mk" + (("/usr/include/libevdev-1.0") + (string-append libevdev "/include/libevdev-1.0"))) + #t))) + ;; No configure script + (delete 'configure) + ;; No target 'check' + (delete 'check)))) + (synopsis "Tap for one key, hold for another") + (description + "Dual Function Keys is a plugin for @code{interception-tools} that allows +one to send arbitrary keycodes when a given key is tapped or held.") + (license license:expat))) + (define-public lvm2 (package (name "lvm2") @@ -3823,7 +3910,7 @@ compliance.") (define-public wireless-regdb (package (name "wireless-regdb") - (version "2020.04.29") + (version "2020.11.20") (source (origin (method url-fetch) (uri (string-append @@ -3831,7 +3918,7 @@ compliance.") "wireless-regdb-" version ".tar.xz")) (sha256 (base32 - "0yicda474ygahv8da18h1p4yf42s6x2f208mlwcw4xsrxld07zc9")) + "0liagyi6ppf5w474qk9j4jz5gbvvn8mc8al1dq4b1xrgv28485ml")) ;; We're building 'regulatory.bin' by ourselves. (snippet '(begin @@ -3885,8 +3972,8 @@ compliance.") "https://wireless.wiki.kernel.org/en/developers/regulatory/wireless-regdb") (synopsis "Wireless regulatory database") (description - "This package contains the wireless regulatory database Central -Regulatory Database Agent (CRDA) daemon. The database contains information on + "This package contains the wireless regulatory database for the Central +Regulatory Database Agent (CRDA). The database contains information on country-specific regulations for the wireless spectrum.") (license license:isc))) @@ -4974,7 +5061,7 @@ and copy/paste text in the console and in xterm.") (define-public btrfs-progs (package (name "btrfs-progs") - (version "5.11") + (version "5.11.1") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/linux/kernel/" @@ -4982,7 +5069,7 @@ and copy/paste text in the console and in xterm.") "btrfs-progs-v" version ".tar.xz")) (sha256 (base32 - "0dq1ryji9hmq10zbyk083lp9r212524a3naai47whq11m6q626fl")))) + "1zpbpmq8qndwls40yg2c9xj9ca6mcxdziadj5i8fbi3ffp2crap3")))) (build-system gnu-build-system) (outputs '("out" "static")) ; static versions of the binaries in "out" @@ -7042,7 +7129,7 @@ privileges.") (define-public psm2 (package (name "psm2") - (version "11.2.86") + (version "11.2.185") (source (origin (method git-fetch) (uri (git-reference @@ -7051,7 +7138,7 @@ privileges.") (file-name (git-file-name name version)) (sha256 (base32 - "1hiqzcmc97lzhaqjva82vf8irgg038cciypsv2brw90ak09n6vwf")))) + "062hg4r6gz7pla9df70nqs5i2a3mp1wszmp4l0g771fykhhrxsjg")))) (build-system gnu-build-system) (arguments '(#:make-flags @@ -7942,8 +8029,8 @@ kernel side implementation.") ("libtool" ,libtool) ("pkg-config" ,pkg-config))) (home-page "https://git.kernel.org/pub/scm/linux/kernel/git/xiang/erofs-utils.git/") - (synopsis "User-space tools for EROFS filesystem") + (synopsis "User-space tools for EROFS file system") (description "EROFS (Enhanced Read-Only File System) is a compressed, -read-only filesystem optimized for resource-scarce devices. This package -provides user-space tools for creating EROFS filesystems.") +read-only file system optimized for resource-scarce devices. This package +provides user-space tools for creating EROFS file systems.") (license license:gpl2+))) diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm index 5682daee3f..f340360dba 100644 --- a/gnu/packages/lisp-xyz.scm +++ b/gnu/packages/lisp-xyz.scm @@ -25,6 +25,7 @@ ;;; Copyright © 2021 Matthew Kraai <kraai@ftbfs.org> ;;; Copyright © 2021 André A. Gomes <andremegafone@gmail.com> ;;; Copyright © 2021 Cage <cage-dev@twistfold.it> +;;; Copyright © 2021 Cameron Chaparro <cameron@cameronchaparro.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -64,6 +65,7 @@ #:use-module (gnu packages file) #:use-module (gnu packages fonts) #:use-module (gnu packages fontutils) + #:use-module (gnu packages gl) #:use-module (gnu packages glib) #:use-module (gnu packages gtk) #:use-module (gnu packages imagemagick) @@ -120,10 +122,79 @@ portable between implementations.") (define-public ecl-alexandria (sbcl-package->ecl-package sbcl-alexandria)) -(define-public sbcl-golden-utils - (let ((commit "9424419d867d5c2f819196ee41667a818a5058e7") +(define-public sbcl-bodge-utilities + (let ((commit "6304bac4abe06d53579e2c0fc4437d14ff077d9f") (revision "1")) (package + (name "sbcl-bodge-utilities") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/borodust/bodge-utilities") + (commit commit))) + (file-name (git-file-name "bodge-utilities" version)) + (sha256 + (base32 "1z1blj05q71vzh323qwyn9p3xs7v0mq2yhwfyzza5libp37wqm3c")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("cffi" ,sbcl-cffi) + ("claw" ,sbcl-claw) + ("dissect" ,sbcl-dissect) + ("local-time" ,sbcl-local-time) + ("log4cl" ,sbcl-log4cl) + ("split-sequence" ,sbcl-split-sequence) + ("static-vectors" ,sbcl-static-vectors) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams))) + (home-page "https://github.com/borodust/bodge-utilities") + (synopsis "Common Lisp utilities library for CL-BODGE") + (description + "This Common Lisp library provides utilities for the @emph{Bodge} library +collection.") + (license license:expat)))) + +(define-public ecl-bodge-utilities + (sbcl-package->ecl-package sbcl-bodge-utilities)) + +(define-public cl-bodge-utilities + (sbcl-package->cl-source-package sbcl-bodge-utilities)) + +(define-public sbcl-bodge-queue + (let ((commit "948c9a501dcd412689952d09eb7453ec2722336a") + (revision "0")) + (package + (name "sbcl-bodge-queue") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/borodust/bodge-queue") + (commit commit))) + (file-name (git-file-name "bodge-queue" version)) + (sha256 + (base32 "148hjikqk8v2m30mj15xh89zni6szf9z3prav580qk9dqr8djjdr")))) + (build-system asdf-build-system/sbcl) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (home-page "https://github.com/borodust/bodge-queue") + (synopsis "Simple queue for Common Lisp") + (description "This Common Lisp library provides a simple FIFO +implementation with no external dependencies.") + (license license:expat)))) + +(define-public cl-bodge-queue + (sbcl-package->cl-source-package sbcl-bodge-queue)) + +(define-public ecl-bodge-queue + (sbcl-package->ecl-package sbcl-bodge-queue)) + +(define-public sbcl-golden-utils + (let ((commit "62a5cb948a011eb26e7a89f56d5839a3334b4100") + (revision "2")) + (package (name "sbcl-golden-utils") (version (git-version "0.0.0" revision commit)) (source @@ -132,9 +203,9 @@ portable between implementations.") (uri (git-reference (url "https://git.mfiano.net/mfiano/golden-utils") (commit commit))) - (file-name (git-file-name name version)) + (file-name (git-file-name "golden-utils" version)) (sha256 - (base32 "15x0phm6820yj3h37ibi06gjyh6z45sd2nz2n8lcbfflwm086q0h")))) + (base32 "13mvxqwd1nmpq8h5hb1s60wyqdj7ji4haxrqr0sy3csyqa8aq2j8")))) (build-system asdf-build-system/sbcl) (inputs `(("alexandria" ,sbcl-alexandria))) @@ -2055,7 +2126,7 @@ also be supported.") (define-public sbcl-ironclad (package (name "sbcl-ironclad") - (version "0.54") + (version "0.55") (source (origin (method git-fetch) @@ -2063,7 +2134,7 @@ also be supported.") (url "https://github.com/sharplispers/ironclad/") (commit (string-append "v" version)))) (sha256 - (base32 "07g0wpvfqq2yk23prs890d4qvbnr3xd6w8ssd88g89xdg483wpvk")) + (base32 "1w4slnc4143w1gcff1wxsivzb8kcji0bpd7y9rld3sabay0qprwl")) (file-name (git-file-name name version)))) (build-system asdf-build-system/sbcl) (native-inputs @@ -2890,6 +2961,39 @@ from GLSL as data.") (define-public cl-glsl-spec (sbcl-package->cl-source-package sbcl-glsl-spec)) +(define-public sbcl-rtg-math + (let ((commit "29fc5b3d0028a4a11a82355ecc8cca62662c69e0") + (revision "1")) + (package + (name "sbcl-rtg-math") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/cbaggers/rtg-math") + (commit commit))) + (file-name (git-file-name "rtg-math" version)) + (sha256 + (base32 "0bhxxnv7ldkkb18zdxyz2rj2a3iawzq2kcp7cn5i91iby7n0082x")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("documentation-utils" ,sbcl-documentation-utils) + ("glsl-symbols" ,sbcl-glsl-spec))) + (home-page "https://github.com/cbaggers/rtg-math") + (synopsis "Common Lisp library of game-related math functions") + (description + "RTG-MATH provides a selection of the math routines most commonly needed +for making realtime graphics in Lisp.") + (license license:bsd-2)))) + +(define-public ecl-rtg-math + (sbcl-package->ecl-package sbcl-rtg-math)) + +(define-public cl-rtg-math + (sbcl-package->cl-source-package sbcl-rtg-math)) + (define-public sbcl-varjo (let ((commit "9e77f30220053155d2ef8870ceba157f75e538d4") (revision "1")) @@ -3345,10 +3449,10 @@ is a library for creating graphical user interfaces.") (sbcl-package->ecl-package sbcl-cl-cffi-gtk)) (define-public sbcl-cl-webkit - (let ((commit "0bc05cc73257670ab241853b9cc9ccb68940fe44")) + (let ((commit "db855639d4a13f6ba296959cf11635b6b67421bf")) (package (name "sbcl-cl-webkit") - (version (git-version "2.4" "10" commit)) + (version (git-version "2.4" "13" commit)) (source (origin (method git-fetch) @@ -3358,7 +3462,7 @@ is a library for creating graphical user interfaces.") (file-name (git-file-name "cl-webkit" version)) (sha256 (base32 - "1kg6illspvb5647pm0x819ag2n7njnqvrm18jzgd28vk6nlkrcmq")))) + "01alj5bfsh2983pwpdy0zpa2rvl4kl0mqzs08ff46is3cb8fqs0g")))) (build-system asdf-build-system/sbcl) (inputs `(("cffi" ,sbcl-cffi) @@ -7223,10 +7327,10 @@ of C+GObject libraries without the need of writing dedicated bindings.") (inputs `(("ppcre" ,sbcl-cl-ppcre))) (home-page "https://github.com/EuAndreh/cl-slug") - (synopsis "Multi-language slug formater") + (synopsis "Multi-language slug formatter") (description "This is a small Common Lisp library to make slugs, mainly for URIs, -from english and beyond.") +from English and beyond.") (license license:llgpl)))) (define-public ecl-cl-slug @@ -9949,7 +10053,7 @@ approach to templating.") (define-public sbcl-postmodern (package (name "sbcl-postmodern") - (version "1.32.8") + (version "1.32.9") (source (origin (method git-fetch) @@ -9958,7 +10062,7 @@ approach to templating.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0vr5inbr8dldf6dsl0qj3h2yrnnsayzfwxfzwkn1pk7xbns2l78q")))) + (base32 "137jci4hn4vlxf48y39k0di27kc89kvxy3brmn3vl9xq56sy6mhz")))) (build-system asdf-build-system/sbcl) (native-inputs `(("fiveam" ,sbcl-fiveam))) @@ -13242,7 +13346,7 @@ and lean bindings to C libraries.") (home-page "https://github.com/borodust/claw-utils") (synopsis "Utilities for easier autowrapping") (description - "This Common Lisp library contains various handy utilties to help + "This Common Lisp library contains various handy utilities to help autowrapping with @code{claw}.") (license license:expat)))) @@ -15262,6 +15366,35 @@ line tool @code{df} and get disk space information using @code{statvfs}.") (define-public cl-diskspace (sbcl-package->cl-source-package sbcl-cl-diskspace)) +(define-public sbcl-cl-cpus + (package + (name "sbcl-cl-cpus") + (version "0.0.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/muyinliu/cl-cpus") + (commit (string-append "v" version)))) + (file-name (git-file-name "cl-cpus" version)) + (sha256 + (base32 "0sdaff9hpsx7bpkkkqavmxmrrlc2d61gmqjjgn8xchncng4a0rf8")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cffi" ,sbcl-cffi))) + (home-page "https://github.com/muyinliu/cl-cpus") + (synopsis "Common Lisp feature to get number of CPUs") + (description + "This package provides a Common Lisp system which has only one function to +return the CPU count of the current system.") + (license license:isc))) + +(define-public ecl-cl-cpus + (sbcl-package->ecl-package sbcl-cl-cpus)) + +(define-public cl-cpus + (sbcl-package->cl-source-package sbcl-cl-cpus)) + (define-public sbcl-fof (package (name "sbcl-fof") @@ -15342,3 +15475,383 @@ numbers in Common Lisp.") (define-public cl-computable-reals (sbcl-package->cl-source-package sbcl-computable-reals)) + +(define-public sbcl-html-template + (package + (name "sbcl-html-template") + (version "0.9.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/edicl/html-template") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0wz3czvjsn4x971dsiia9f9nvvcmbkablcl75zsvxndkimc93wxb")))) + (build-system asdf-build-system/sbcl) + (home-page "https://edicl.github.io/html-template/") + (synopsis "HTML templates from Common Lisp") + (description + "HTML-TEMPLATE is a Common Lisp library which can be used to fill +templates with arbitrary (string) values at runtime. The result does not have +to be HTML. + +It is loosely modeled after the Perl module @code{HTML::Template} and +partially compatible with a its syntax, though both libraries contain some +extensions that the other does not support. + +HTML-TEMPLATE translates templates into efficient closures which can be +re-used as often as needed. It uses a cache mechanism so you can update +templates while your program is running and have the changes take effect +immediately.") + (license license:bsd-2))) + +(define-public ecl-html-template + (sbcl-package->ecl-package sbcl-html-template)) + +(define-public cl-html-template + (sbcl-package->cl-source-package sbcl-html-template)) + +(define-public sbcl-quickproject + (package + (name "sbcl-quickproject") + (version "1.4.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xach/quickproject") + (commit (string-append "release-" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1szs8p2wr1yr9mjmj3h3557l6wxzzga0iszimb68z0hb1jj3lva6")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cl-fad" ,sbcl-cl-fad) + ("html-template" ,sbcl-html-template))) + (arguments + '(#:asd-files '("quickproject.asd"))) + (home-page "https://xach.com/lisp/quickproject/") + (synopsis "Create Common Lisp project skeletons") + (description + "Quickproject provides a quick way to make a Common Lisp project. After +creating a project, it extends the ASDF registry so the project may be +immediately loaded.") + (license license:expat))) + +(define-public ecl-quickproject + (sbcl-package->ecl-package sbcl-quickproject)) + +(define-public cl-quickproject + (sbcl-package->cl-source-package sbcl-quickproject)) + +(define-public sbcl-bodge-math + (let ((commit "9159b7faf88d440024c07110dbef2abddb20b9af") + (revision "1")) + (package + (name "sbcl-bodge-math") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/borodust/bodge-math") + (commit commit))) + (file-name (git-file-name "bodge-math" version)) + (sha256 + (base32 "0r3vnl9lywn4ksy34apcv6j825qp7l1naddawr14v4lwacndb80v")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("bodge-utilities" ,sbcl-bodge-utilities) + ("rtg-math" ,sbcl-rtg-math))) + (home-page "https://github.com/borodust/bodge-math") + (synopsis "Common Lisp core math utilities of BODGE library collection") + (description + "This Common Lisp package contains the core math utilities of the +@emph{Bodge} library collection.") + (license license:expat)))) + +(define-public ecl-bodge-math + (sbcl-package->ecl-package sbcl-bodge-math)) + +(define-public cl-bodge-math + (sbcl-package->cl-source-package sbcl-bodge-math)) + +(define-public sbcl-cl-conspack + (let ((commit "fc8473bc6f929696b03b43820596b7c976c4678e") + (revision "1")) + (package + (name "sbcl-cl-conspack") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/conspack/cl-conspack") + (commit commit))) + (file-name (git-file-name "cl-conspack" version)) + (sha256 + (base32 "0b7qzvsrpvnw12hqhjmz0b02sigj0kdjy55j4k7xzmj8684cs8bx")))) + (build-system asdf-build-system/sbcl) + ;; FIXME: (Sharlatan-20210331T220652+0100): Test are disabled because of: + ;; + ;; Error while trying to load definition for system cl-conspack-test + ;; from pathname .../cl-conspack/cl-conspack-test.asd: + ;; Error opening .../checkl/formalize-tmpGHU3ALSV.fasl": Permission denied + ;; + ;; It looks like the issues is in CheckL itself as other packages keep + ;; failing test where it's in use. + (arguments + '(#:tests? #f + #:asd-files '("cl-conspack.asd"))) + (native-inputs + `(("checkl" ,sbcl-checkl))) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("closer-mop" ,sbcl-closer-mop) + ("fast-io" ,sbcl-fast-io) + ("ieee-floats" ,sbcl-ieee-floats) + ("trivial-garbage" ,sbcl-trivial-garbage) + ("trivial-utf-8" ,sbcl-trivial-utf-8))) + (home-page "https://github.com/conspack/cl-conspack") + (synopsis "CONSPACK implementation for Common Lisp") + (description + "This package provides a CONSPACK implementation for Common Lisp.") + (license license:bsd-3)))) + +(define-public ecl-cl-conspack + (sbcl-package->ecl-package sbcl-cl-conspack)) + +(define-public cl-conspack + (sbcl-package->cl-source-package sbcl-cl-conspack)) + +(define-public sbcl-cl-opengl + (let ((commit "e2d83e0977b7e7ac3f3d348d8ccc7ccd04e74d59") + (revision "1")) + (package + (name "sbcl-cl-opengl") + (version (git-version "0.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/3b/cl-opengl") + (commit commit))) + (file-name (git-file-name "cl-opengl" version)) + (sha256 + (base32 "0mhqmll09f079pnd6mgswz9nvr6h5n27d4q7zpmm2igf1v460id7")))) + (build-system asdf-build-system/sbcl) + (arguments + `(#:asd-systems '("cl-opengl" "cl-glu" "cl-glut") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-lib-path + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "gl/library.lisp" + (("libGL.so" all) + (string-append (assoc-ref inputs "mesa") "/lib/" all))) + (substitute* "glu/library.lisp" + (("libGLU.so" all) + (string-append (assoc-ref inputs "glu") "/lib/" all))) + (substitute* "glut/library.lisp" + (("libglut.so" all) + (string-append (assoc-ref inputs "freeglut") "/lib/" all))) + #t))))) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("cffi" ,sbcl-cffi) + ("float-features" ,sbcl-float-features) + ("freeglut" ,freeglut) + ("glu" ,glu) + ("mesa" ,mesa))) + (home-page "https://github.com/3b/cl-opengl") + (synopsis "Common Lisp bindings to OpenGL, GLU and GLUT APIs") + (description + "This package provides a set of bindings and utilities for accessing the +OpenGL (Mesa), GLU and GLUT (FreeGLUT) APIs using CFFI.") + (license license:bsd-3)))) + +(define-public ecl-cl-opengl + (sbcl-package->ecl-package sbcl-cl-opengl)) + +(define-public cl-opengl + (sbcl-package->cl-source-package sbcl-cl-opengl)) + +(define-public sbcl-shadow + (let ((commit "b2031adbfba3579b48c9d39ad997e19b79b6852f") + (revision "1")) + (package + (name "sbcl-shadow") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.mfiano.net/mfiano/shadow") + (commit commit))) + (file-name (git-file-name "shadow" version)) + (sha256 + (base32 "0w1i734gkdkziin74ql2nhx7jdjxx02ylssaa6qdrvnj4br1124a")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cffi" ,sbcl-cffi) + ("cl-opengl" ,sbcl-cl-opengl) + ("glsl-packing" ,sbcl-glsl-packing) + ("golden-utils" ,sbcl-golden-utils) + ("static-vectors" ,sbcl-static-vectors) + ("varjo" ,sbcl-varjo))) + (home-page "https://git.mfiano.net/mfiano/shadow") + (synopsis "Management system for OpenGL shader programs") + (description + "This package provides a Common Lisp library for defining OpenGL shader +programs. There are also functions for referencing shader programs by name, +querying for basic information about them, modifying uniform variables +throughout the lifecycle of an OpenGL application, and managing certain OpenGL +buffer object types (UBO, SSBO currently).") + (license license:expat)))) + +(define-public ecl-shadow + (sbcl-package->ecl-package sbcl-shadow)) + +(define-public cl-shadow + (sbcl-package->cl-source-package sbcl-shadow)) + +(define-public sbcl-umbra + (let ((commit "d6ef2f6cbfa26180929061129eaf325bf17f73d8") + (revision "1")) + (package + (name "sbcl-umbra") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.mfiano.net/mfiano/umbra") + (commit commit))) + (file-name (git-file-name "umbra" version)) + (sha256 + (base32 "04vyh2j00zdpb8ryxr8g81wjcmqlz9wrn55r3cypcj4qg970r5wi")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("golden-utils" ,sbcl-golden-utils) + ("shadow" ,sbcl-shadow) + ("varjo" ,sbcl-varjo))) + (home-page "https://git.mfiano.net/mfiano/umbra") + (synopsis "Common Lisp library of reusable GPU shader functions") + (description + "This is a Common Lisp library consisting of a collection of useful GPU +shader functions, written with @code{Shadow}.") + (license license:expat)))) + +(define-public ecl-umbra + (sbcl-package->ecl-package sbcl-umbra)) + +(define-public cl-umbra + (sbcl-package->cl-source-package sbcl-umbra)) + +(define-public sbcl-abstract-classes + (let ((commit "7fa74f1e057f9ba7c1ffecff14f049f979e45267") + (revision "1")) + (package + (name "sbcl-abstract-classes") + (version (git-version "1.7.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://bitbucket.org/eeeickythump/cl-abstract-classes") + (commit commit))) + (file-name (git-file-name "cl-abstract-classes" version)) + (sha256 + (base32 "06lby4i6xbbgs7kgb0f3fqybvyskyg6djhrf967lnysv7hn3zpg9")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("closer-mop" ,sbcl-closer-mop))) + (arguments + `(#:asd-systems '("abstract-classes" "singleton-classes"))) + (home-page "https://bitbucket.org/eeeickythump/cl-abstract-classes") + (synopsis "Abstract, final, and singleton metaclasses for CLOS") + (description + "This package provides Common Lisp extension to the MOP to allow +abstract, final and singleton classes.") + (license license:public-domain)))) + +(define-public ecl-abstract-classes + (sbcl-package->ecl-package sbcl-abstract-classes)) + +(define-public cl-abstract-classes + (sbcl-package->cl-source-package sbcl-abstract-classes)) + +(define-public sbcl-coalton + (let ((commit "4a42ffb4222fde3abfd1b50d96e455ff2eef9fe8") + (revision "1")) + (package + (name "sbcl-coalton") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/stylewarning/coalton") + (commit commit))) + (file-name (git-file-name "coalton" version)) + (sha256 + (base32 "0aidwwam7cnhb3p9212zbv5w2dl6kr5iklzanypzr1a9lqaxwdlk")))) + (build-system asdf-build-system/sbcl) + (native-inputs + `(("fiasco" ,sbcl-fiasco))) + (inputs + `(("abstract-classes" ,sbcl-abstract-classes) + ("alexandria" ,sbcl-alexandria) + ("global-vars" ,sbcl-global-vars) + ("optima" ,sbcl-optima) + ("trivial-garbage" ,sbcl-trivial-garbage))) + (home-page "https://github.com/stylewarning/coalton") + (synopsis "Dialect of ML in Common Lisp") + (description + "Coalton is a dialect of ML embedded in Common Lisp. It emphasizes +practicality and interoperability with Lisp, and is intended to be a DSL that +allows one to gradually make their programs safer.") + (license license:expat)))) + +(define-public ecl-coalton + (sbcl-package->ecl-package sbcl-coalton)) + +(define-public cl-coalton + (sbcl-package->cl-source-package sbcl-coalton)) + +(define-public sbcl-clip + (let ((commit "7afa68702fbb99c47ed115ea0faccd97a29d9b2e") + (revision "1")) + (package + (name "sbcl-clip") + (version (git-version "0.7.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/shinmera/clip") + (commit commit))) + (file-name (git-file-name "clip" version)) + (sha256 + (base32 "13kkajkva2shm19fvn4yashsw18l6imv2rmy3hmpcky7g5ay7bv3")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("array-utils" ,sbcl-array-utils) + ("lquery" ,sbcl-lquery))) + (home-page "https://shinmera.github.io/clip/") + (synopsis "Common Lisp HTML templating engine") + (description + "Clip is an attempt at a templating library that allows you to write +templates in a way that is both accessible to direct webdesign and +flexible. The main idea is to incorporate transformation commands into an HTML +file through tags and attributes. Clip is heavily dependant on Plump and +lQuery.") + (license license:zlib)))) + +(define-public ecl-clip + (sbcl-package->ecl-package sbcl-clip)) + +(define-public cl-clip + (sbcl-package->cl-source-package sbcl-clip)) diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm index f7aecfb5ef..983e9fa1ec 100644 --- a/gnu/packages/lisp.scm +++ b/gnu/packages/lisp.scm @@ -14,7 +14,7 @@ ;;; Copyright © 2018, 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019, 2020 Katherine Cox-Buday <cox.katherine.e@gmail.com> ;;; Copyright © 2019 Jesse Gildersleve <jessejohngildersleve@protonmail.com> -;;; Copyright © 2019, 2020 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2019, 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Zhu Zihao <all_but_last@163.com> ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> @@ -400,14 +400,14 @@ an interpreter, a compiler, a debugger, and much more.") (define-public sbcl (package (name "sbcl") - (version "2.1.2") + (version "2.1.3") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/sbcl/sbcl/" version "/sbcl-" version "-source.tar.bz2")) (sha256 - (base32 "02scrqyp2izsd8xjm2k5j5lhn4pdhd202jlcb54ysmcqjd80awdp")))) + (base32 "1h6s3as8m72ik971zy7a8j1kqfyy5gzpv9ksy09ixv65a10ll3d9")))) (build-system gnu-build-system) (outputs '("out" "doc")) (native-inputs @@ -843,7 +843,7 @@ enough to play the original mainframe Zork all the way through.") (define-public txr (package (name "txr") - (version "246") + (version "255") (source (origin (method git-fetch) @@ -852,7 +852,7 @@ enough to play the original mainframe Zork all the way through.") (commit (string-append "txr-" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1ynkz0ss7nn1ssiaxagpq80iabknf085nk0pra9hn8y9hx7av0db")))) + (base32 "0fjca44761x29xg5hh60yf4i3k7462z7ysnadbk2wzisp42yxk6j")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm index 6f8417b50b..b710318a69 100644 --- a/gnu/packages/llvm.scm +++ b/gnu/packages/llvm.scm @@ -790,17 +790,6 @@ of programming tools as well as libraries with equivalent functionality.") (base32 "153vcvj8gvgwakzr4j0kndc0b7wn91c2g1vy2vg24s6spxcc23gn")))))) -(define-public clang-runtime-3.6 - (clang-runtime-from-llvm - llvm-3.6 - "11qx8d3pbfqjaj2x207pvlvzihbs1z2xbw4crpz7aid6h1yz6bqg" - '("clang-runtime-asan-build-fixes.patch"))) - -(define-public clang-3.6 - (clang-from-llvm llvm-3.6 clang-runtime-3.6 - "1wwr8s6lzr324hv4s1k6na4j5zv6n9kdhi14s4kb9b13d93814df" - #:patches '("clang-3.5-libc-search-path.patch"))) - (define-public llvm-3.5 (package (inherit llvm-3.6) (version "3.5.2") diff --git a/gnu/packages/logging.scm b/gnu/packages/logging.scm index eafc23b2e6..6a4975e435 100644 --- a/gnu/packages/logging.scm +++ b/gnu/packages/logging.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Gábor Boskovits <boskovits@gmail.com> ;;; Copyright © 2019 Meiyo Peng <meiyo@riseup.net> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> @@ -190,7 +190,7 @@ output in multiple windows in a terminal.") (define-public spdlog (package (name "spdlog") - (version "1.8.2") + (version "1.8.5") (source (origin (method git-fetch) @@ -199,8 +199,7 @@ output in multiple windows in a terminal.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "03vmwbi9v7r3v8kzd0lj10fchp54kxbxwzfx7dp6qzkxjrvmx2dx")))) + (base32 "179krvg5sad6dviqpcjwg6czzknnilqszrg1d0fgp12h6sy66vqg")))) (build-system cmake-build-system) ;; TODO run benchmark. Currently not possible, as adding ;; (gnu packages benchmark) forms a dependency cycle @@ -215,19 +214,3 @@ library.") ;; spdlog is under Expat license, but the bundled fmt library in ;; "include/spdlog/fmt/bundled" is under BSD 2 clause license. (license (list license:expat license:bsd-2)))) - -(define-public spdlog-1.7 - (package - (inherit spdlog) - (name "spdlog") - (version "1.7.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/gabime/spdlog") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1ryaa22ppj60461hcdb8nk7jwj84arp4iw4lyw594py92g4vnx3j")))))) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index c538d77aaf..35584c497a 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -8,7 +8,7 @@ ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org> ;;; Copyright © 2015, 2016, 2018 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org> ;;; Copyright © 2016 Al McElrath <hello@yrns.org> ;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Leo Famulari <leo@famulari.name> @@ -27,21 +27,22 @@ ;;; Copyright © 2018, 2019, 2020, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com> -;;; Copyright © 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2019, 2020 Tanguy Le Carrour <tanguy@bioneland.org> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Justus Winter <justus@sequoia-pgp.org> ;;; Copyright © 2020 Eric Brown <ecbrown@ericcbrown.com> ;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> -;;; Copyright © 2020 Alexey Abramov <levenson@mmer.org> +;;; Copyright © 2020, 2021 Alexey Abramov <levenson@mmer.org> ;;; Copyright © 2020 Tim Gesthuizen <tim.gesthuizen@yahoo.de> -;;; Copyright © 2020 Alexandru-Sergiu Marton <brown121407@posteo.ro> +;;; Copyright © 2020, 2021 Alexandru-Sergiu Marton <brown121407@posteo.ro> ;;; Copyright © 2020 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2020 B. Wilson <elaexuotee@wilsonb.com> ;;; Copyright © 2020 divoplade <d@divoplade.fr> ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> +;;; Copyright © 2021 Benoit Joly <benoit@benoitj.ca> ;;; ;;; This file is part of GNU Guix. ;;; @@ -89,6 +90,7 @@ #:use-module (gnu packages gettext) #:use-module (gnu packages ghostscript) #:use-module (gnu packages glib) + #:use-module (gnu packages golang) #:use-module (gnu packages gnome) #:use-module (gnu packages gnupg) #:use-module (gnu packages groff) @@ -156,7 +158,9 @@ #:use-module (guix utils) #:use-module (guix build-system cmake) #:use-module (guix build-system glib-or-gtk) + #:use-module (guix build-system go) #:use-module (guix build-system gnu) + #:use-module (guix build-system go) #:use-module (guix build-system guile) #:use-module (guix build-system perl) #:use-module (guix build-system python) @@ -164,6 +168,51 @@ #:use-module (srfi srfi-1) #:use-module (ice-9 match)) +(define-public abook + (package + (name "abook") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://abook.sourceforge.io/devel/abook-" version ".tar.gz")) + (sha256 + (base32 "1yf0ifyjhq2r003pnpn92mn0924bn9yxjifxxj2ldcsgd7w0vagh")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Fix "undefined reference to `field_id'" errors. + (add-after 'unpack 'fix-build-with-recent-gcc + (lambda _ + (substitute* '("database.c" "database.h") + (("^inline int" all) (string-append "extern " all))))) + ;; Fix following error during bootstrap: "gettext infrastructure + ;; mismatch: using a Makefile.in.in from gettext version 0.18 but the + ;; autoconf macros are from gettext version 0.20". + (add-before 'bootstrap 'fix-gettext-macro-version + (lambda _ + (substitute* "po/Makefile.in.in" + (("0.18") "0.20")))) + (replace 'bootstrap + (lambda _ + (invoke "aclocal") + (invoke "automake" "--add-missing") + (invoke "autoconf")))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("gettext" ,gettext-minimal))) + (inputs + `(("ncurses" ,ncurses) + ("readline" ,readline))) + (home-page "https://abook.sourceforge.io/") + (synopsis "Text-based addressbook") + (description + "Abook is a text-based addressbook program designed to use with Mutt mail +client.") + (license license:gpl2))) + (define-public anubis (package (name "anubis") @@ -318,6 +367,37 @@ software.") ;; Libraries are under LGPLv3+, and programs under GPLv3+. (list license:gpl3+ license:lgpl3+)))) +(define-public go-gitlab.com-shackra-goimapnotify + (let ((commit "832bc7112db9b28e28d69e90b91ea6c005244c9b") + (revision "0")) + (package + (name "go-gitlab.com-shackra-goimapnotify") + (version (git-version "0.0.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/shackra/goimapnotify") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1h27kshx4vwl5k6vc2szsq3d701fzs4gczjypz907f8hj0lrnjmy")))) + (build-system go-build-system) + (arguments + `(#:import-path "gitlab.com/shackra/goimapnotify")) + (propagated-inputs + `(("go-github-com-emersion-go-imap" ,go-github-com-emersion-go-imap) + ("go-github-com-emersion-go-imap-idle" ,go-github-com-emersion-go-imap-idle) + ("go-github-com-emersion-go-sasl" ,go-github-com-emersion-go-sasl) + ("go-github-com-sirupsen-logrus" ,go-github-com-sirupsen-logrus) + ("go-golang-org-x-text" ,go-golang-org-x-text))) + (synopsis "Execute scripts on IMAP mailbox changes.") + (description + "Script to execute scripts on IMAP mailbox changes (new/deleted/updated +messages) using IDLE. Implemented in Go.") + (home-page "https://gitlab.com/shackra/goimapnotify") + (license license:gpl3+)))) + (define-public guile2.2-mailutils (package (inherit mailutils) @@ -413,7 +493,7 @@ to run without any changes.") (define-public fetchmail (package (name "fetchmail") - (version "6.4.17") + (version "6.4.18") (source (origin (method url-fetch) @@ -421,7 +501,7 @@ to run without any changes.") (version-major+minor version) "/" "fetchmail-" version ".tar.xz")) (sha256 - (base32 "1ijh9l7pg2yk5s5h1yj3vpd1az31giqy9bjrna10daj13gqws6x4")))) + (base32 "17r5zfk9yh7jhgdb360dlzx5fx9lsbmalasx6zgxw9v9vjycjb9h")))) (build-system gnu-build-system) (inputs `(("openssl" ,openssl))) @@ -495,7 +575,7 @@ operating systems.") (define-public neomutt (package (name "neomutt") - (version "20201127") + (version "20210205") (source (origin (method git-fetch) @@ -504,7 +584,7 @@ operating systems.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1yhpz591jhcjpwllgppwf7vl7z2rnaqfphsvqd1sihd9k4lwch06")))) + (base32 "15kr9nvb4j8lx5rl2yapv231rbp4sbn709vv82pfhx5717x3yf00")))) (build-system gnu-build-system) (inputs `(("cyrus-sasl" ,cyrus-sasl) @@ -2685,14 +2765,14 @@ easily (one at a time).") (define-public mpop (package (name "mpop") - (version "1.4.12") + (version "1.4.13") (source (origin (method url-fetch) (uri (string-append "https://marlam.de/mpop/releases/" "mpop-" version ".tar.xz")) (sha256 - (base32 "02j8qfd44dfyq1sq7r9znj9y6wam39ncch1sc8chcdlw5nsmaqsz")))) + (base32 "1hbx69d6ivbvjajrcp54fdb3g1ms4ydj0ybf3bfhlravqrk88jdk")))) (build-system gnu-build-system) (inputs `(("gnutls" ,gnutls))) @@ -3136,6 +3216,39 @@ writing OpenSMTPd filters.") messages with @acronym{DKIM, DomainKeys Identified Mail} (RFC 4871).") (license license:expat))) +(define-public opensmtpd-filter-rspamd + (package + (name "opensmtpd-filter-rspamd") + (version "0.1.7") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/poolpOrg/filter-rspamd") + (commit (string-append "v" version)))) + (sha256 + (base32 "1qhrw20q9y44ffgx5k14nvqc9dh47ihywgzza84g0zv9xgif7hd5")) + (file-name (git-file-name name version)))) + (build-system go-build-system) + (arguments + `(#:import-path "github.com/poolpOrg/filter-rspamd" + #:phases + (modify-phases %standard-phases + (add-before 'build 'set-bootstrap-variables + (lambda* (#:key outputs inputs #:allow-other-keys) + ;; Tell the build system where to install binaries + (let* ((out (assoc-ref outputs "out")) + (libexec (string-append out "/libexec/opensmtpd"))) + (setenv "GOBIN" libexec))))))) + (native-inputs + `(("opensmtpd" ,opensmtpd))) + (home-page "https://github.com/poolpOrg/filter-rspamd") + (synopsis "OpenSMTPd filter to request an Rspamd analysis") + (description + "The @command{filter-rspamd} OpenSMTPd filter implements the +Rspamd protocol and allows OpenSMTPd to request an Rspamd analysis of +an SMTP transaction before a message is committed to queue.") + (license license:isc))) + (define-public mailman (package (name "mailman") @@ -3791,13 +3904,13 @@ servers. The 4rev1 and 4 versions of IMAP are supported.") (define-public urlscan (package (name "urlscan") - (version "0.9.5") + (version "0.9.6") (source (origin (method url-fetch) (uri (pypi-uri "urlscan" version)) (sha256 - (base32 "07vcwirap0p4dkqrqblfn1q017slgd8m6qyijvbi3gxnr09pbyx2")))) + (base32 "09lxi7dhn49fpb3ij4cgrhj3qqqqs9rcxbjb7p9smw5wblrqpzga")))) (build-system python-build-system) (propagated-inputs `(("python-urwid" ,python-urwid))) @@ -3839,8 +3952,8 @@ It is a replacement for the @command{urlview} program.") (license license:gpl2+))) (define-public mumi - (let ((commit "8c82c8f104ff0013e2bfb3d6b4277280f32446a6") - (revision "3")) + (let ((commit "9f070bd90adc67064cd8aff4e40f303d5957ef4a") + (revision "5")) (package (name "mumi") (version (git-version "0.0.1" revision commit)) @@ -3852,7 +3965,7 @@ It is a replacement for the @command{urlview} program.") (file-name (git-file-name name version)) (sha256 (base32 - "1gkwagy7qplzq2x2zqsbrwhlilxviqb0dqhrvnnhxd7z8wvyzcsi")))) + "1ym1j3nzy8qhd1ydadccbgm0nckkmnq3vnz9qh9x8rasx7zg1ldp")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build gnu-build-system) diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm index 95382bf92d..06a8093600 100644 --- a/gnu/packages/man.scm +++ b/gnu/packages/man.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2014, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2012, 2014, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 David Thompson <dthompson2@worcester.edu> ;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Alex Kost <alezost@gmail.com> @@ -32,6 +32,7 @@ #:use-module (guix build-system gnu) #:use-module (guix build-system ruby) #:use-module (guix utils) + #:use-module (gnu packages compression) #:use-module (gnu packages dbm) #:use-module (gnu packages flex) #:use-module (gnu packages gawk) @@ -222,6 +223,50 @@ accessed using the man command. It uses a Berkeley DB database in place of the traditional flat-text whatis databases.") (license license:gpl2+))) +(define-public mandoc + (package + (name "mandoc") + (version "1.14.5") + (source (origin + (method url-fetch) + (uri (string-append "https://mandoc.bsd.lv/snapshots/mandoc-" + version ".tar.gz")) + (sha256 + (base32 + "1xyqllxpjj1kimlipx11pzyywf5c25i4wmv0lqm7ph3gnlnb86c2")))) + (build-system gnu-build-system) + (arguments + `(#:test-target "regress" + #:phases (modify-phases %standard-phases + (add-before 'configure 'set-prefix + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "configure" + (("^CC=.*") + (string-append "CC=" ,(cc-for-target) "\n")) + (("^DEFCFLAGS=\\\\\"") + "DEFCFLAGS=\"-O2 ") + (("^UTF8_LOCALE=.*") ;used for tests + "UTF8_LOCALE=en_US.UTF-8\n") + (("^MANPATH_(BASE|DEFAULT)=.*" _ which) + (string-append "MANPATH_" which "=" + "/run/current-system/profile/share/man\n")) + (("^PREFIX=.*") + (string-append "PREFIX=" (assoc-ref outputs "out") + "\n")))))))) + (native-inputs `(("perl" ,perl))) ;used to run tests + (inputs `(("zlib" ,zlib))) + (synopsis "Tools for BSD mdoc and man pages") + (description + "mandoc is a suite of tools compiling mdoc, the roff macro language of +choice for BSD manual pages, and man, the predominant historical language for +UNIX manuals. It is small and quite fast. The main component of the toolset +is the @command{mandoc} utility program, based on the libmandoc validating +compiler, to format output for UTF-8 and ASCII UNIX terminals, HTML 5, +PostScript, and PDF. Additional tools include the @command{man} viewer, and +@command{apropos} and @command{whatis}.") + (home-page "https://mandoc.bsd.lv/") + (license license:isc))) + (define-public man-pages (package (name "man-pages") diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 879af45dc7..1f96ed907e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -12,7 +12,7 @@ ;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016, 2018, 2020 Kei Kebreau <kkebreau@posteo.net> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017, 2018, 2019, 2020 Paul Garlick <pgarlick@tourbillion-technology.com> @@ -34,7 +34,7 @@ ;;; Copyright © 2019 Steve Sprang <scs@stevesprang.com> ;;; Copyright © 2019 Robert Smith <robertsmith@posteo.net> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> -;;; Copyright © 2020 Felix Gruber <felgru@posteo.net> +;;; Copyright © 2020, 2021 Felix Gruber <felgru@posteo.net> ;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz> @@ -43,6 +43,8 @@ ;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Martin Becze <mjbecze@riseup.net> ;;; Copyright © 2021 Gerd Heber <gerd.heber@gmail.com> +;;; Copyright © 2021 Franck Pérignon <franck.perignon@univ-grenoble-alpes.fr> +;;; Copyright © 2021 Philip McGrath <philip@philipmcgrath.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -2292,7 +2294,8 @@ ASCII text files using Gmsh's own scripting language.") (native-inputs `(("pkg-config" ,pkg-config) ;;("python-astropy" ,python-astropy) ;; FIXME: Package this. - ("qttools" ,qttools))) + ("qttools" ,qttools) + ("python-sip" ,python-sip-4))) (inputs `(("ghostscript" ,ghostscript) ;optional, for EPS/PS output ("python-dbus" ,python-dbus) @@ -3249,6 +3252,63 @@ YACC = bison -pscotchyy -y -b y (synopsis "Programs and libraries for graph algorithms (32-bit integers)"))) +(define-public scotch-shared + (package (inherit scotch) + (name "scotch-shared") + (native-inputs + `(("gcc" ,gcc) + ("flex" ,flex) + ("bison" ,bison))) + (arguments + (substitute-keyword-arguments (package-arguments scotch) + ((#:phases scotch-shared-phases) + `(modify-phases ,scotch-shared-phases + (replace + 'configure + (lambda _ + ;; Otherwise, the RUNPATH will lack the final path component. + (setenv "RPATHFLAGS" (string-append "-Wl,-rpath=" + (assoc-ref %outputs "out") "/lib")) + (call-with-output-file "Makefile.inc" + (lambda (port) + (format port " +EXE = +LIB = .so +OBJ = .o +MAKE = make +AR = gcc +ARFLAGS = -shared -o +CAT = cat +CCS = gcc +CCP = mpicc +CCD = gcc +CPPFLAGS =~{ -D~a~} +CFLAGS = -O2 -g -fPIC $(CPPFLAGS) $(RPATHFLAGS) +CLIBFLAGS = -shared -fPIC +LDFLAGS = -lz -lm -lrt -lpthread -Xlinker --no-as-needed +CP = cp +LEX = flex -Pscotchyy -olex.yy.c +LN = ln +MKDIR = mkdir +MV = mv +RANLIB = echo +YACC = bison -pscotchyy -y -b y +" + '("COMMON_FILE_COMPRESS_GZ" + "COMMON_PTHREAD" + "COMMON_RANDOM_FIXED_SEED" + "INTSIZE64" ;use 'int64_t' + ;; Prevents symbolc clashes with libesmumps + "SCOTCH_RENAME" + ;; XXX: Causes invalid frees in superlu-dist tests + ;; "SCOTCH_PTHREAD" + ;; "SCOTCH_PTHREAD_NUMBER=2" + "restrict=__restrict" + ))))#t)) + (delete 'check))))) + (synopsis + "Programs and libraries for graph algorithms (shared libraries version)"))) + (define-public pt-scotch (package (inherit scotch) (name "pt-scotch") @@ -3296,6 +3356,28 @@ YACC = bison -pscotchyy -y -b y (synopsis "Programs and libraries for graph algorithms (with MPI and 32-bit integers)"))) +(define-public pt-scotch-shared + (package (inherit scotch-shared) + (name "pt-scotch-shared") + (propagated-inputs + `(("openmpi" ,openmpi))) ;Headers include MPI headers + (arguments + (substitute-keyword-arguments (package-arguments scotch-shared) + ((#:phases scotch-shared-phases) + `(modify-phases ,scotch-shared-phases + (replace + 'build + (lambda _ + (invoke "make" (format #f "-j~a" (parallel-job-count)) + "ptscotch" "ptesmumps") + + ;; Install the serial metis compatibility library + (invoke "make" "-C" "libscotchmetis" "install"))) + (add-before 'check 'mpi-setup + ,%openmpi-setup))))) + (synopsis "Graph algorithms (shared libraries version, with MPI)"))) + + (define-public metis (package (name "metis") @@ -3308,6 +3390,9 @@ YACC = bison -pscotchyy -y -b y (sha256 (base32 "1cjxgh41r8k6j029yxs8msp3z6lcnpm16g5pvckk35kc7zhfpykn")))) + (properties + `((release-monitoring-url + . "http://glaros.dtc.umn.edu/gkhome/metis/metis/download"))) (build-system cmake-build-system) (inputs `(("blas" ,openblas))) @@ -3745,52 +3830,94 @@ parts of it.") (synopsis "Optimized BLAS library based on GotoBLAS (ILP64 version)") (license license:bsd-3))) -(define* (make-blis implementation #:optional substitutable?) - "Return a BLIS package with the given IMPLEMENTATION (see config/ in the -source tree for a list of implementations.) - -SUBSTITUTABLE? determines whether the package is made available as a -substitute. - -Currently the specialization must be selected at configure-time, but work is -underway to allow BLIS to select the right optimized kernels at run time: -<https://github.com/flame/blis/issues/129>." +(define-public blis (package - (name (if (string=? implementation "reference") - "blis" - (string-append "blis-" implementation))) - (version "0.2.2") + (name "blis") + (version "0.8.1") (home-page "https://github.com/flame/blis") (source (origin (method git-fetch) (uri (git-reference (url home-page) (commit version))) (sha256 (base32 - "1wr79a50nm4abhw8w3sn96nmwp5mrzifcigk7khw9qcgyyyqayfh")) + "05ifil6jj9424sr8kmircl8k4bmxnl3y12a79vwj1kxxva5gz50g")) (file-name (git-file-name "blis" version)))) + (native-inputs + `(("python" ,python) + ("perl" ,perl))) (build-system gnu-build-system) (arguments - `(#:test-target "test" - - #:substitutable? ,substitutable? - - #:phases (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key outputs #:allow-other-keys) - ;; This is a home-made 'configure' script. - (let ((out (assoc-ref outputs "out"))) - (invoke "./configure" "-p" out - "-d" "opt" - "--disable-static" - "--enable-shared" - "--enable-threading=openmp" - - ,implementation)))) - (add-before 'check 'show-test-output - (lambda _ - ;; By default "make check" is silent. Make it verbose. - (system "tail -F output.testsuite &") - #t))))) + `(#:modules + ((guix build gnu-build-system) + (guix build utils) + (srfi srfi-1)) + #:test-target "test" + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs + target + system + (configure-flags '()) + #:allow-other-keys) + ;; This is a home-made 'configure' script. + (let* ((out (assoc-ref outputs "out")) + ;; Guix-specific support for choosing the configuration + ;; via #:configure-flags: see below for details. + (config-flag-prefix "--blis-config=") + (maybe-config-flag (find + (lambda (s) + (string-prefix? config-flag-prefix s)) + configure-flags)) + (configure-flags (if maybe-config-flag + (delete maybe-config-flag + configure-flags) + configure-flags)) + ;; Select the "configuration" to build. + ;; The "generic" configuration is non-optimized but + ;; portable (no assembly). + ;; The "x86_64" configuration family includes + ;; sub-configurations for all supported + ;; x86_64 microarchitectures. + ;; BLIS currently lacks runtime hardware detection + ;; for other architectures: see + ;; <https://github.com/flame/blis/commit/c534da6>. + ;; Conservatively, we stick to "generic" on armhf, + ;; aarch64, and ppc64le for now. (But perhaps + ;; "power9", "cortexa9", and "cortexa57" might be + ;; general enough to use?) + ;; Another approach would be to use the "auto" + ;; configuration and make this package + ;; non-substitutable. + ;; The build is fairly intensive, though. + (blis-config + (cond + (maybe-config-flag + (substring maybe-config-flag + (string-length config-flag-prefix))) + ((string-prefix? "x86_64" (or target system)) + "x86_64") + (else + "generic"))) + (configure-args + `("-p" ,out + "-d" "opt" + "--disable-static" + "--enable-shared" + "--enable-threading=openmp" + "--enable-verbose-make" + ,@configure-flags + ,blis-config))) + (format #t "configure args: ~s~%" configure-args) + (apply invoke + "./configure" + configure-args) + #t))) + (add-before 'check 'show-test-output + (lambda _ + ;; By default "make check" is silent. Make it verbose. + (system "tail -F output.testsuite &") + #t))))) (synopsis "High-performance basic linear algebra (BLAS) routines") (description "BLIS is a portable software framework for instantiating high-performance @@ -3802,35 +3929,12 @@ it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls.") (license license:bsd-3))) -(define-public blis - ;; This is the "reference" implementation, which is the non-optimized but - ;; portable variant (no assembly). - (make-blis "reference" #t)) +(define-public blis-sandybridge (deprecated-package "blis-sandybridge" blis)) +(define-public blis-haswell (deprecated-package "blis-haswell" blis)) +(define-public blis-knl (deprecated-package "blis-knl" blis)) (define ignorance blis) -(define-syntax-rule (blis/x86_64 processor) - "Expand to a package specialized for PROCESSOR." - (package - (inherit (make-blis processor)) - (supported-systems '("x86_64-linux")))) - -(define-public blis-sandybridge - ;; BLIS specialized for Sandy Bridge processors (launched 2011): - ;; <http://ark.intel.com/products/codename/29900/Sandy-Bridge>. - (blis/x86_64 "sandybridge")) - -(define-public blis-haswell - ;; BLIS specialized for Haswell processors (launched 2013): - ;; <http://ark.intel.com/products/codename/42174/Haswell>. - (blis/x86_64 "haswell")) - -(define-public blis-knl - ;; BLIS specialized for Knights Landing processor (launched 2016): - ;; <http://ark.intel.com/products/series/92650/Intel-Xeon-Phi-x200-Product-Family>. - (blis/x86_64 "knl")) - - (define-public openlibm (package (name "openlibm") @@ -3911,7 +4015,7 @@ Fresnel integrals, and similar related functions as well.") (define-public suitesparse (package (name "suitesparse") - (version "5.8.1") + (version "5.9.0") (source (origin (method git-fetch) @@ -3921,7 +4025,7 @@ Fresnel integrals, and similar related functions as well.") (file-name (git-file-name name version)) (sha256 (base32 - "0qjlyfxs8s48rs63c2fzspisgq1kk4bwkgnhmh125hgkdhrq2w1c")) + "1zhkix58afw92s7p291prljdm3yi0pjg1kbi3lczdb8rb14jkz5n")) (patches (search-patches "suitesparse-mongoose-cmake.patch")) (modules '((guix build utils))) (snippet @@ -3931,9 +4035,9 @@ Fresnel integrals, and similar related functions as well.") #t)))) (build-system gnu-build-system) (arguments - '(#:tests? #f ;no "check" target + `(#:tests? #f ;no "check" target #:make-flags - (list "CC=gcc" + (list (string-append "CC=" ,(cc-for-target)) "TBB=-ltbb" "MY_METIS_LIB=-lmetis" ;; Flags for cmake (required to build GraphBLAS and Mongoose) diff --git a/gnu/packages/matrix.scm b/gnu/packages/matrix.scm index 8a3a1283fa..5c2b194d07 100644 --- a/gnu/packages/matrix.scm +++ b/gnu/packages/matrix.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2020 Alex ter Weele <alex.ter.weele@gmail.com> ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -31,6 +32,30 @@ #:use-module (guix download) #:use-module (guix packages)) +(define-public python-matrix-client + (package + (name "python-matrix-client") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "matrix-client" version)) + (sha256 + (base32 + "1mgjd0ymf9mvqjkvgx3xjhxap7rzdmpa21wfy0cxbw2xcswcrqyw")))) + (build-system python-build-system) + (propagated-inputs + `(("python-requests" ,python-requests))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner) + ("python-responses" ,python-responses))) + (home-page + "https://github.com/matrix-org/matrix-python-sdk") + (synopsis "Client-Server SDK for Matrix") + (description "This package provides client-server SDK for Matrix.") + (license license:asl2.0))) + (define-public python-matrix-synapse-ldap3 (package (name "python-matrix-synapse-ldap3") @@ -61,13 +86,13 @@ an LDAP server.") (define-public synapse (package (name "synapse") - (version "1.25.0") + (version "1.29.0") (source (origin (method url-fetch) (uri (pypi-uri "matrix-synapse" version)) (sha256 (base32 - "0382qcsmgvg24p0xvb37kn3y1kd3bn363kblgwg58iy92df0pga4")))) + "0if2yhpz8psg0661401mvxznldbfhk2j9rhbs25jdaqm9jsv6907")))) (build-system python-build-system) ;; TODO Run tests with ‘PYTHONPATH=. trial3 tests’. (propagated-inputs diff --git a/gnu/packages/mes.scm b/gnu/packages/mes.scm index b4b7bcb6b5..750ec2e67a 100644 --- a/gnu/packages/mes.scm +++ b/gnu/packages/mes.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2017, 2018, 2019, 2020, 2021 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -98,14 +99,14 @@ extensive examples, including parsers for the Javascript and C99 languages.") (define-public nyacc (package (inherit nyacc-0.99) - (version "1.03.0") + (version "1.03.6") (source (origin (method url-fetch) (uri (string-append "mirror://savannah/nyacc/nyacc-" version ".tar.gz")) (sha256 (base32 - "1vdiqpm3p0ndmpmkzcpkpjvgklfsk4wxrhkixdxbczpafdfl635p")) + "1s7kli288l4pizjaarx8m6jg7g0mgfy8rpbs9lpzg8la7wr5rvp4")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index af8122f1a9..4cf15e5563 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2015, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Nikita <nikita@n0.is> ;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca> ;;; Copyright © 2016, 2017, 2018, 2019 Clément Lassieur <clement@lassieur.org> @@ -27,6 +27,7 @@ ;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> ;;; Copyright © 2020, 2021 Robert Karszniewicz <avoidr@posteo.de> +;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -89,6 +90,7 @@ #:use-module (gnu packages lua) #:use-module (gnu packages man) #:use-module (gnu packages markup) + #:use-module (gnu packages matrix) #:use-module (gnu packages mono) #:use-module (gnu packages mpd) #:use-module (gnu packages ncurses) @@ -101,6 +103,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) + #:use-module (gnu packages python-check) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) @@ -785,7 +788,7 @@ authentication.") (define-public pidgin (package (name "pidgin") - (version "2.14.1") + (version "2.14.3") (source (origin (method url-fetch) @@ -793,11 +796,9 @@ authentication.") (string-append "mirror://sourceforge/pidgin/Pidgin/" version "/pidgin-" version ".tar.gz")) (sha256 - (base32 "1c4dzxg9c3d9zfqqa7jwijj9rv9fm6w95igmpljwy88lxq7v5w11")) + (base32 "0vdfnm96m1kh4gm6xn6i7s9c5zjh1p18jg4595k4p5bplvd6fmm8")) (patches - (search-patches - "pidgin-add-search-path.patch" - "pidgin-vv-gst.patch")) + (search-patches "pidgin-add-search-path.patch")) (modules '((guix build utils))) (snippet '(begin @@ -874,7 +875,16 @@ authentication.") "/lib") (string-append "--with-tkconfig=" (assoc-ref %build-inputs "tk") - "/lib")))) + "/lib")) + #:phases + (modify-phases %standard-phases + (add-before 'check 'eat-leftovers + ;; XXX Remove when updating beyond 2.14.3. Equivalent to + ;; <https://keep.imfreedom.org/pidgin/pidgin/rev/d4d72fde60c2>. + (lambda _ + ;; Remove a lingering [broken] oscar reference. + (substitute* "libpurple/tests/check_libpurple.c" + ((".*oscar_util_suite.*") ""))))))) (native-search-paths (list (search-path-specification @@ -1616,99 +1626,6 @@ guidelines. It provides an easy to use application that allows you to connect with friends and family without anyone else listening in.") (license license:gpl3+))) -(define-public pybitmessage - (package - (name "pybitmessage") - (version "0.6.3.2") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/Bitmessage/PyBitmessage") - (commit version))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "1lmhbpwsqh1v93krlqqhafw2pc3y0qp8zby186yllbph6s8kdp35")))) - (propagated-inputs - ;; TODO: - ;; Package "pyopencl", required in addition to numpy for OpenCL support. - ;; Package "gst123", required in addition to alsa-utils and - ;; mpg123 for sound support. - `(("python2-msgpack" ,python2-msgpack) - ("python2-pythondialog" ,python2-pythondialog) - ("python2-pyqt-4" ,python2-pyqt-4) - ("python2-sip" ,python2-sip) - ("python2-pysqlite" ,python2-pysqlite) - ("python2-pyopenssl" ,python2-pyopenssl))) - (native-inputs - `(("openssl" ,openssl))) - (build-system python-build-system) - (arguments - `(#:modules ((guix build python-build-system) - (guix build utils)) - #:tests? #f ;no test target - #:python ,python-2 - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-unmatched-python-shebangs - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "src/bitmessagemain.py" - (("#!/usr/bin/env python2.7") - (string-append "#!" (which "python")))) - (substitute* "src/bitmessagecli.py" - (("#!/usr/bin/env python2.7.x") - (string-append "#!" (which "python")))) - #t)) - (add-after 'unpack 'fix-depends - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "src/depends.py" - (("libcrypto.so") - (string-append (assoc-ref inputs "openssl") - "/lib/libcrypto.so"))) - #t)) - (add-after 'unpack 'fix-local-files-in-paths - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "src/proofofwork.py" - (("bitmsghash.so") - (string-append (assoc-ref outputs "out") - "/lib/bitmsghash.so"))) - #t)) - (add-after 'unpack 'fix-pyelliptic - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "src/pyelliptic/openssl.py" - (("libcrypto.so") - (string-append (assoc-ref inputs "openssl") - "/lib/libcrypto.so")) - (("libssl.so") - (string-append (assoc-ref inputs "openssl") - "/lib/libssl.so"))) - #t)) - (add-after 'unpack 'noninteractive-build - ;; This applies upstream commit 4c597d3f7cf9f83a763472aa165a1a4292019f20 - (lambda _ - (substitute* "setup.py" - (("except NameError") - "except EOFError, NameError")) - #t)) - ;; XXX: python setup.py does not build and install bitmsghash, - ;; without it PyBitmessage tries to compile it at first run - ;; in the store, which due to obvious reasons fails. Do it - ;; and place it in /lib. - (add-after 'unpack 'build-and-install-bitmsghash - (lambda* (#:key outputs #:allow-other-keys) - (with-directory-excursion "src/bitmsghash" - (system* "make") - (install-file "bitmsghash.so" - (string-append (assoc-ref outputs "out") "/lib"))) - #t))))) - (license license:expat) - (description - "Distributed and trustless peer-to-peer communications protocol -for sending encrypted messages to one person or many subscribers.") - (synopsis "Distributed peer-to-peer communication") - (home-page "https://bitmessage.org/"))) - (define-public ytalk (package (name "ytalk") @@ -2511,7 +2428,13 @@ QMatrixClient project.") ;; Relax overly strict package version specifications. (lambda _ (substitute* "setup.py" - (("==") ">=")) + (("==") ">=") + ((",<.*'") "'")) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "hangups")) #t))))) (propagated-inputs `(("python-aiohttp" ,python-aiohttp) @@ -2952,4 +2875,102 @@ social and chat platform.") designed for experienced users.") (license license:gpl2+))) +(define-public python-zulip + (package + (name "python-zulip") + (version "0.7.1") + (source + (origin + ;; There is no source on Pypi. + (method git-fetch) + (uri (git-reference + (url "https://github.com/zulip/python-zulip-api") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0da1ki1v252avy27j6d7snnc0gyq0xa9fypm3qdmxhw2w79d6q36")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'cd-to-zulip-dir + (lambda _ + (chdir "zulip") + #t)) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (let ((test-zulip "../tools/test-zulip")) + (when tests? + (add-installed-pythonpath inputs outputs) + (setenv "PYTHONPATH" (string-append ".:" (getenv "PYTHONPATH"))) + (patch-shebang test-zulip) + (invoke test-zulip)) + #t)))))) + (propagated-inputs + `(("python-matrix-client" ,python-matrix-client) + ("python-pyopenssl" ,python-pyopenssl) + ("python-requests" ,python-requests) + ("python-six" ,python-six))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-distro" ,python-distro) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/zulip/python-zulip-api") + (synopsis "Zulip's API Python bindings") + (description + "This package provides Python bindings to Zulip's API.") + (license license:asl2.0))) + +(define-public zulip-term + (package + (name "zulip-term") + (version "0.5.2") + (source + (origin + ;; Pypi package doesn't ship tests. + (method git-fetch) + (uri (git-reference + (url "https://github.com/zulip/zulip-terminal") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1xhhy3v4wck74a83avil0rnmsi2grrh03cww19n5mv80p2q1cjmf")) + (modules '((guix build utils))) + (snippet + '(begin + (substitute* "setup.py" + (("\\=\\=1\\.7") ">=1.7") ; pytest-mock + (("\\=\\=2\\.5") ">=2.5") ; pytest-cov + (("4\\.5\\.2") "4.4.2")) ; lxml + #t)))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Delete failing tests. + (delete-file "tests/cli/test_run.py") + (invoke "pytest")) + #t))))) + (inputs + `(("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-lxml" ,python-lxml) + ("python-mypy-extensions" ,python-mypy-extensions) + ("python-urwid" ,python-urwid) + ("python-urwid-readline" ,python-urwid-readline) + ("python-zulip" ,python-zulip))) + (native-inputs + `(("python-distro" ,python-distro) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock))) + (home-page "https://github.com/zulip/zulip-terminal") + (synopsis "Zulip's official terminal client") + (description "This package contains Zulip's official terminal client.") + (license license:asl2.0))) + ;;; messaging.scm ends here diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index 46e1903704..22b02a561b 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -160,7 +160,7 @@ etc. via a Web interface. Features include: (define-public zabbix-agentd (package (name "zabbix-agentd") - (version "5.2.5") + (version "5.2.6") (source (origin (method url-fetch) @@ -168,7 +168,7 @@ etc. via a Web interface. Features include: "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz")) (sha256 - (base32 "1iaby7rablakx91hajnkmjcc4zkvrq7xsvlhss3lw5drm12rf3ff")))) + (base32 "100n1rv7r4pqagxxifzpcza5bhrr2fklzx7gndxwiyq4597p1jvn")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/mp3.scm b/gnu/packages/mp3.scm index 675e18ed7e..ff67d9e9e5 100644 --- a/gnu/packages/mp3.scm +++ b/gnu/packages/mp3.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2014, 2015, 2017, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2017, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> @@ -208,7 +208,7 @@ a highly stable and efficient implementation.") (define-public taglib (package (name "taglib") - (version "1.12-beta-1") + (version "1.12") (source (origin (method git-fetch) (uri (git-reference @@ -217,7 +217,7 @@ a highly stable and efficient implementation.") (file-name (git-file-name name version)) (sha256 (base32 - "1mp6w2ikniw8w6d5wr0h20j0ijg8jw7s9dli5a8k9znpznvxpym4")))) + "0q7dkn5rh9v6b0scmcp2qmjv3iransafmpn6jvgid0yq75m2nqd2")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; Tests are not ran with BUILD_SHARED_LIBS on. @@ -405,7 +405,8 @@ command-line tool as well as a C library, libmpg123.") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/mpg321/mpg321/" - version "/mpg321-" version ".tar.gz")) + version "/mpg321_" version ".orig.tar.gz")) + (file-name (string-append "mpg321-" version ".tar.gz")) (sha256 (base32 "0ki8mh76bbmdh77qsiw682dvi8y468yhbdabqwg05igmwc1wqvq5")) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 042e4e7510..4288f8867d 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -34,6 +34,9 @@ ;;; Copyright © 2019 Riku Viitanen <riku.viitanen0@gmail.com> ;;; Copyright © 2020 Ryan Prior <rprior@protonmail.com> ;;; Copyright © 2021 Leo Prikler <leo.prikler@student.tugraz.at> +;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot> +;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -134,6 +137,7 @@ #:use-module (gnu packages protobuf) #:use-module (gnu packages pulseaudio) ;libsndfile #:use-module (gnu packages python) + #:use-module (gnu packages python-check) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) @@ -141,6 +145,7 @@ #:use-module (gnu packages readline) #:use-module (gnu packages rsync) #:use-module (gnu packages sdl) + #:use-module (gnu packages sphinx) #:use-module (gnu packages sqlite) #:use-module (gnu packages stb) #:use-module (gnu packages tcl) @@ -152,6 +157,7 @@ #:use-module (gnu packages video) #:use-module (gnu packages vim) ;for 'xxd' #:use-module (gnu packages web) + #:use-module (gnu packages webkit) #:use-module (gnu packages wxwidgets) #:use-module (gnu packages xdisorg) #:use-module (gnu packages xml) @@ -447,7 +453,7 @@ playing your music.") (define-public strawberry (package (name "strawberry") - (version "0.8.5") + (version "0.9.2") (source (origin (method git-fetch) (uri (git-reference @@ -456,7 +462,7 @@ playing your music.") (file-name (git-file-name name version)) (sha256 (base32 - "0lfbbmhfzwlhnjhzfk5zn8h71cabx47pzfkcw2nylkbqkz83r57r")) + "0d9asg21j9ai23sb35cimws8bd8fsnpha777rgscraa7i09q0rx2")) (modules '((guix build utils) (ice-9 regex))) (snippet @@ -480,9 +486,6 @@ playing your music.") (build-system cmake-build-system) (arguments `(#:test-target "run_strawberry_tests" - #:configure-flags - (list "-DUSE_SYSTEM_TAGLIB=TRUE" - "-DBUILD_TESTS=TRUE") #:phases (modify-phases %standard-phases (add-after 'install 'wrap-program @@ -716,7 +719,7 @@ settings (aliasing, linear interpolation and cubic interpolation).") (define-public hydrogen (package (name "hydrogen") - (version "1.0.1") + (version "1.0.2") (source (origin (method git-fetch) @@ -725,7 +728,7 @@ settings (aliasing, linear interpolation and cubic interpolation).") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0snljpvbcgikhz610c325dgvayi0k512p3bglck9vvi90wsqx7l1")))) + (base32 "0nhn2njs8yyxcijxv5zgymf3211y6anzm0v9kn4vnd8kai7zwxxp")))) (build-system cmake-build-system) (arguments `(#:test-target "tests" @@ -1490,6 +1493,57 @@ Guile.") ;; more than an hour of silence, so double the max silent time. (properties `((max-silent-time . 7200))))) +(define-public python-abjad + (package + (name "python-abjad") + (version "3.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Abjad/abjad") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1dzf5v7pawbzkb4qxp4s5z4r3gibkk705pag83yvgzkx6fd6jf2g")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda _ + (substitute* "setup.py" + (("uqbar>=0.5.1, <0.5.0") "uqbar>=0.5.0")) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; See: https://stackoverflow.com/a/34140498 + (invoke "python" "-m" "pytest" "tests") + #t)))))) + (native-inputs + `(("lilypond" ,lilypond) + ("python-black" ,python-black) + ("python-flake8" ,python-flake8) + ("python-iniconfig" ,python-iniconfig) + ("python-isort" ,python-isort) + ("python-mypy" ,python-mypy) + ("python-ply" ,python-ply) + ("python-pytest" ,python-pytest-6) + ("python-pytest-cov" ,python-pytest-cov) + ("python-sphinx-autodoc-typehints" ,python-sphinx-autodoc-typehints))) + (propagated-inputs + `(("python-quicktions" ,python-quicktions) + ("python-roman" ,python-roman) + ("python-six" ,python-six) + ("python-uqbar" ,python-uqbar))) + (home-page "https://abjad.github.io") + (synopsis "Python API for building LilyPond files") + (description + "This package provides a Python API for building LilyPond files.") + (license license:expat))) + (define-public non-sequencer ;; The latest tagged release is three years old and uses a custom build ;; system, so we take the last commit. @@ -2630,18 +2684,17 @@ browser.") (define-public drumstick (package (name "drumstick") - (version "2.0.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/drumstick/" version "/drumstick-" version ".tar.bz2")) (sha256 (base32 - "088j0w3kr9i4lh78y0js0q8adlfzkr89xq2dxc8y3bafsgihax1x")))) + "06lz4kzpgg5lalcjb14pi35jxca5f4j6ckqf6mdxs1k42dfhjpjp")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; no test target - #:configure-flags '("-DLIB_SUFFIX=") #:phases (modify-phases %standard-phases (add-before 'configure 'fix-docbook @@ -2664,7 +2717,7 @@ browser.") ("docbook-xsl" ,docbook-xsl) ("doxygen" ,doxygen) ("graphviz" ,graphviz))) ; for dot - (home-page "http://drumstick.sourceforge.net/") + (home-page "https://drumstick.sourceforge.io/") (synopsis "C++ MIDI library") (description "Drumstick is a set of MIDI libraries using C++/Qt5 idioms and style. It @@ -2678,14 +2731,14 @@ backends, including ALSA, OSS, Network and FluidSynth.") (define-public vmpk (package (name "vmpk") - (version "0.8.0") + (version "0.8.2") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/vmpk/vmpk/" version "/vmpk-" version ".tar.bz2")) (sha256 (base32 - "0wn45c4sbvan7schq93zmsgg5fcf144mbbawxn5kq699vrbc3473")))) + "1kv256j13adk4ib7r464gsl4vjhih820bq37ddhqfyfd07wh53a2")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; no test target @@ -4775,6 +4828,67 @@ list view, and a score editor. MusE aims to be a complete multitrack virtual studio.") (license license:gpl2+))) +(define-public gsequencer + (package + (name "gsequencer") + (version "3.7.48") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.savannah.gnu.org/git/gsequencer.git/") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0pqaj09x3lzcj0zbbkqpyaky9i1w462bhhvg1akh73nzwvyy46zd")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'prepare-x-for-test + (lambda _ + (system "Xvfb &") + (setenv "DISPLAY" ":0") + #t))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("cunit" ,cunit) + ("gettext" ,gettext-minimal) + ("gobject-introspection" ,gobject-introspection) + ("gtk-doc" ,gtk-doc) + ("libtool" ,libtool) + ("libxslt" ,libxslt) + ("pkg-config" ,pkg-config) + ("xorg-server" ,xorg-server-for-tests))) + (inputs + `(("alsa-lib" ,alsa-lib) + ("dssi" ,dssi) + ("fftw" ,fftw) + ("gst-plugins-base" ,gst-plugins-base) + ("gstreamer" ,gstreamer) + ("gtk+" ,gtk+) + ("jack" ,jack-1) + ("ladspa" ,ladspa) + ("libinstpatch" ,libinstpatch) + ("libsamplerate" ,libsamplerate) + ("libsndfile" ,libsndfile) + ("libsoup" ,libsoup) + ("libuuid" ,util-linux "lib") + ("libxml2" ,libxml2) + ("lv2" ,lv2) + ("pulseaudio" ,pulseaudio) + ("webkitgtk" ,webkitgtk))) + (home-page "https://nongnu.org/gsequencer/") + (synopsis "Advanced Gtk+ Sequencer") + (description + "GSequencer allows you to play, capture and create music. There is a piano +roll, automation and wave form editor. It has machines for playing drum samples, +Soundfont2 sound containers and synthesizers. They usually can be connected to a +MIDI input source (instrument). It has support for various audio backends like +ALSA, Pulseaudio, JACK, OSSv4 and CoreAudio.") + (license license:gpl3+))) + (define-public dssi (package (name "dssi") diff --git a/gnu/packages/nettle.scm b/gnu/packages/nettle.scm index 838ead7251..7088e1da4a 100644 --- a/gnu/packages/nettle.scm +++ b/gnu/packages/nettle.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2017, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -71,7 +72,7 @@ cryptographic toolkits for object-oriented languages or in applications themselves.") (license gpl2+))) -(define-public nettle +(define-public nettle-3.5 ;; This version is not API-compatible with version 2. In particular, lsh ;; cannot use it yet. So keep it separate. (package (inherit nettle-2) @@ -89,3 +90,17 @@ themselves.") ;; Build "fat" binaries where the right implementation is chosen ;; at run time based on CPU features (starting from 3.1.) `(cons "--enable-fat" ,flags)))))) + +(define-public nettle-3.7 + (package (inherit nettle-3.5) + (version "3.7.2") + (source (origin + (method url-fetch) + (uri (string-append "mirror://gnu/nettle/nettle-" + version ".tar.gz")) + (sha256 + (base32 + "0qpi1qp3bcvqdsaxy2pzg530db95x8qjahkynxgwvr6dy5760ald")))))) + +;;; Upgrading Nettle on master would cause 10000+ packages to be rebuilt. +(define-public nettle nettle-3.5) diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index ca37b58ab0..08c74dbcb4 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -26,7 +26,7 @@ ;;; Copyright © 2018, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2018, 2020 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz> -;;; Copyright © 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Vasile Dumitrascu <va511e@yahoo.com> ;;; Copyright © 2019 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2019 Timotej Lazar <timotej.lazar@araneo.si> @@ -42,6 +42,7 @@ ;;; Copyright © 2020 Jesse Dowell <jessedowell@gmail.com> ;;; Copyright © 2020 Hamzeh Nasajpour <h.nasajpour@pantherx.org> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2021 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -302,7 +303,7 @@ Android, and ChromeOS.") (native-inputs `(("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (inputs `(("gstreamer" ,gstreamer) @@ -448,6 +449,8 @@ performance across unpredictable networks, such as the Internet.") (url "https://github.com/sctp/lksctp-tools") (commit (string-append "v" version)))) (file-name (git-file-name name version)) + (patches + (search-patches "lksctp-tools-1.0.18-fix-header-file-name.patch")) (sha256 (base32 "1x4fwzrlzvfa3vcpja97m8w5g9ir2zrh4zs7zksminrnmdrs0dsr")))) (build-system gnu-build-system) @@ -471,6 +474,38 @@ sockets, and also some helper utilities around SCTP.") ;; Others. license:gpl2+)))) +(define-public python-pysctp + (package + (name "python-pysctp") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pysctp" version)) + (sha256 + (base32 "14h2qlmfi24bizhvvqkfqfa78pzm3911ibrzy9k94i97xy1978dy")))) + (build-system python-build-system) + (inputs + `(("lksctp-tools" ,lksctp-tools))) + (arguments + `(#:tests? #f ;; tests require network + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-setup.py + (lambda _ + (substitute* "setup.py" + (("include_dirs\\s*=.*") + (string-append "include_dirs = ['.'] + '" + (getenv "C_INCLUDE_PATH") "'.split(':'),")) + (("library_dirs\\s*=.*") + (string-append "library_dirs = '" + (getenv "LIBRARY_PATH") "'.split(':'),")))))))) + (home-page "https://github.com/p1sec/pysctp") + (synopsis "Python module for the SCTP protocol stack and library") + (description "@code{pysctp} implements the SCTP socket API. You need a +SCTP-aware kernel (most are).") + (license license:lgpl2.1+))) + (define-public knockd (package (name "knockd") @@ -1895,7 +1930,7 @@ loop.") (define-public perl-data-validate-ip (package (name "perl-data-validate-ip") - (version "0.27") + (version "0.30") (source (origin (method url-fetch) @@ -1903,7 +1938,7 @@ loop.") "mirror://cpan/authors/id/D/DR/DROLSKY/Data-Validate-IP-" version ".tar.gz")) (sha256 - (base32 "1mmppyzsh1w2z2h86kvzqxy56wxgs62a3kf8nvcnz76bblir5ap1")))) + (base32 "074adrlvkiahj1fdc9nvb95dpfyjzm2jzhi90m8xaw4bw5ipcbzy")))) (build-system perl-build-system) (native-inputs `(("perl-test-requires" ,perl-test-requires))) @@ -1922,7 +1957,7 @@ private (reserved).") (define-public perl-net-dns (package (name "perl-net-dns") - (version "1.28") + (version "1.30") (source (origin (method url-fetch) @@ -1933,7 +1968,7 @@ private (reserved).") (string-append "mirror://cpan/authors/id/N/NL/NLNETLABS/Net-DNS-" version ".tar.gz"))) (sha256 - (base32 "0kh2qbhxv005pqb35mdk2bld7cg7xnxl12qvdwv30sgd91aqica7")))) + (base32 "1nm560xjg173wvv736ai3ib1gwssyy41gi0yv4j5fqamfav70ph5")))) (build-system perl-build-system) (inputs `(("perl-digest-hmac" ,perl-digest-hmac))) @@ -2098,22 +2133,19 @@ It is intended primarily for use in testing.") (define-public perl-net-cidr-lite (package (name "perl-net-cidr-lite") - (version "0.21") + (version "0.22") (source (origin (method url-fetch) (uri (string-append - "mirror://cpan/authors/id/D/DO/DOUGW/Net-CIDR-Lite-" + "mirror://cpan/authors/id/S/ST/STIGTSP/Net-CIDR-Lite-" version ".tar.gz")) (sha256 - (base32 - "14shj73zbqmfjbp0qz1fs9j4p2dpvz5hfkm4qfdjbydflbl2b8fg")))) + (base32 "05w57db2lx4djb4vixzdr6qgrzyzkk047nl812g7nq8s6k5xh5s3")))) (build-system perl-build-system) - (home-page - "https://metacpan.org/release/Net-CIDR-Lite") - (synopsis - "Perl extension for merging IPv4 or IPv6 CIDR addresses") + (home-page "https://metacpan.org/release/Net-CIDR-Lite") + (synopsis "Perl extension for merging IPv4 or IPv6 CIDR addresses") (description "Net::CIDR::Lite merges IPv4 or IPv6 CIDR addresses.") (license license:gpl1+))) @@ -2497,7 +2529,7 @@ networks.") (define-public speedtest-cli (package (name "speedtest-cli") - (version "2.1.2") + (version "2.1.3") (source (origin (method git-fetch) @@ -2506,7 +2538,7 @@ networks.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1456yly6iym2c9bl6pi4sz8xbw34bm2dxm1vzpydsd6jazwpmy26")))) + (base32 "10fazl4kwf41mk7pnwpfms16n0ii0kg9pf8r3mz9xwnl9y04mv9x")))) (build-system python-build-system) (home-page "https://github.com/sivel/speedtest-cli") (synopsis "Internet bandwidth tester") @@ -3027,7 +3059,8 @@ eight bytes) tools ;; Either BSD-3 or GPL-2 can be used. (license (list license:bsd-3 license:gpl2)))) -(define-public asio +;;; This is an old version required by rested. +(define-public asio-1.12 (package (name "asio") (version "1.12.2") @@ -3054,6 +3087,18 @@ low-level I/O programming that provides developers with a consistent asynchronous model using a modern C++ approach.") (license license:boost1.0))) +(define-public asio + (package + (inherit asio-1.12) + (version "1.18.1") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/asio/asio/" + version " (Stable)/asio-" version ".tar.bz2")) + (sha256 + (base32 "04wi69d72l1p5c7d63z1dz06zn8pdqsbgx1if98dszs9ymfqgyaa")))))) + (define-public shadowsocks ;; There are some security fixes after the last release. (let* ((commit "e332ec93e9c90f1cbee676b022bf2c5d5b7b1239") @@ -3319,62 +3364,61 @@ never see any machines other than the one Dante is running on.") (license (license:non-copyleft "file://LICENSE")))) (define-public restbed - (let ((commit "6eb385fa9051203f28bf96cc1844bbb5a9a6481f")) - (package - (name "restbed") - (version (git-version "4.6" "1" commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/Corvusoft/restbed/") - (commit commit))) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0k60i5drklqqrb4khb25fzkgz9y0sncxf1sp6lh2bm1m0gh0661n")))) - (build-system cmake-build-system) - (inputs - `(("asio" ,asio) - ("catch" ,catch-framework) - ("openssl" ,openssl))) - (arguments - `(#:tests? #f - #:configure-flags - '("-DBUILD_TESTS=NO" - "-DBUILD_EXAMPLES=NO" - "-DBUILD_SSL=NO" - "-DBUILD_SHARED=NO") - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'apply-patches-and-fix-paths - (lambda* (#:key inputs #:allow-other-keys) - (let ((asio (assoc-ref inputs "asio")) - (catch (assoc-ref inputs "catch")) - (openssl (assoc-ref inputs "openssl"))) - (substitute* "cmake/Findasio.cmake" - (("(find_path\\( asio_INCLUDE asio\\.hpp HINTS ).*$" all begin) - (string-append begin " \"" asio "/include\" )"))) - (substitute* "cmake/Findcatch.cmake" - (("(find_path\\( catch_INCLUDE catch\\.hpp HINTS ).*$" all begin) - (string-append begin " \"" catch "/include\" )"))) - (substitute* "cmake/Findopenssl.cmake" - (("(find_library\\( ssl_LIBRARY ssl ssleay32 HINTS ).*$" all begin) - (string-append begin " \"" openssl "/lib\" )")) - (("(find_library\\( crypto_LIBRARY crypto libeay32 HINTS ).*$" all begin) - (string-append begin " \"" openssl "/lib\" )")) - (("(find_path\\( ssl_INCLUDE openssl/ssl\\.h HINTS ).*$" all begin) - (string-append begin " \"" openssl "/include\" )"))))))))) - (synopsis "Asynchronous RESTful functionality to C++11 applications") - (description "Restbed is a comprehensive and consistent programming + (package + (name "restbed") + (version "4.7") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Corvusoft/restbed/") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "055qicb773a599dsqbcz5xf0xj1wpk33mdrkyi0fsmyjmn8d2p9d")))) + (build-system cmake-build-system) + (inputs + `(("asio" ,asio-1.12) + ("catch" ,catch-framework) + ("openssl" ,openssl))) + (arguments + `(#:tests? #f + #:configure-flags + '("-DBUILD_TESTS=NO" + "-DBUILD_EXAMPLES=NO" + "-DBUILD_SSL=NO" + "-DBUILD_SHARED=NO") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'apply-patches-and-fix-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((asio (assoc-ref inputs "asio")) + (catch (assoc-ref inputs "catch")) + (openssl (assoc-ref inputs "openssl"))) + (substitute* "cmake/Findasio.cmake" + (("(find_path\\( asio_INCLUDE asio\\.hpp HINTS ).*$" all begin) + (string-append begin " \"" asio "/include\" )"))) + (substitute* "cmake/Findcatch.cmake" + (("(find_path\\( catch_INCLUDE catch\\.hpp HINTS ).*$" all begin) + (string-append begin " \"" catch "/include\" )"))) + (substitute* "cmake/Findopenssl.cmake" + (("(find_library\\( ssl_LIBRARY ssl ssleay32 HINTS ).*$" all begin) + (string-append begin " \"" openssl "/lib\" )")) + (("(find_library\\( crypto_LIBRARY crypto libeay32 HINTS ).*$" all begin) + (string-append begin " \"" openssl "/lib\" )")) + (("(find_path\\( ssl_INCLUDE openssl/ssl\\.h HINTS ).*$" all begin) + (string-append begin " \"" openssl "/include\" )"))))))))) + (synopsis "Asynchronous RESTful functionality to C++11 applications") + (description "Restbed is a comprehensive and consistent programming model for building applications that require seamless and secure communication over HTTP.") - (home-page "https://github.com/Corvusoft/restbed") - (license license:agpl3+)))) + (home-page "https://github.com/Corvusoft/restbed") + (license license:agpl3+))) (define-public restinio (package (name "restinio") - (version "0.6.1.1") + (version "0.6.13") (source (origin (method git-fetch) (uri (git-reference @@ -3383,7 +3427,7 @@ communication over HTTP.") (file-name (git-file-name name version)) (sha256 (base32 - "141a96hx8zhcdv121g6cs91n46kb47y040v25pnvz5f54964z7f5")))) + "0gb0yc88hdzwm08zdiviay6s08q427za33kfbygib7bdzp2wr2dm")))) (build-system cmake-build-system) (inputs ; TODO: Need to force-keep references on some inputs, e.g. boost. `(("zlib" ,zlib) @@ -3416,40 +3460,39 @@ and targeted primarily for asynchronous processing of HTTP-requests.") (define-public opendht (package (name "opendht") - (version "2.1.4") + (version "2.2.0rc4") ;jami requires >= 2.2.0 (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/savoirfairelinux/opendht") (commit version))) (file-name (git-file-name name version)) - (patches (search-patches "opendht-fix-jami.patch")) (sha256 (base32 - "1ax26ri1ifb6s8ppd28jmanka9yf8mw3np65q2h4djhhik0phhal")))) + "1wc0f6cnvnlmhxnx64nxqgsx93k4g7ljdaqjl40ml74jg3nqrzcl")))) ;; Since 2.0, the gnu-build-system does not seem to work anymore, upstream bug? (build-system cmake-build-system) (inputs `(("argon2" ,argon2) - ("nettle" ,nettle) + ("nettle" ,nettle-3.7) ("readline" ,readline) ("jsoncpp" ,jsoncpp) ("openssl" ,openssl) ;required for the DHT proxy ("fmt" ,fmt))) (propagated-inputs `(("gnutls" ,gnutls) ;included in opendht/crypto.h - ("msgpack" ,msgpack))) ;included in several installed headers + ("msgpack" ,msgpack) ;included in several installed headers + ("restinio" ,restinio))) ;included in opendht/http.h (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) ("pkg-config" ,pkg-config) - ("restinio" ,restinio) ;headers only library ("libtool" ,libtool) ("cppunit" ,cppunit))) (arguments `(#:tests? #f ; Tests require network connection. #:configure-flags - '(;; "-DOPENDHT_TESTS=on" + '(;;"-DOPENDHT_TESTS=on" "-DOPENDHT_TOOLS=off" "-DOPENDHT_PYTHON=off" "-DOPENDHT_PROXY_SERVER=on" @@ -3823,14 +3866,14 @@ thousands of connections is clearly realistic with today's hardware.") (define-public lldpd (package (name "lldpd") - (version "1.0.8") + (version "1.0.10") (source (origin (method url-fetch) (uri (string-append "https://media.luffy.cx/files/lldpd/lldpd-" version ".tar.gz")) (sha256 - (base32 "1vrxr8lgkw7q6ixaaili6ac7i0j0326194s498n2dxihdvkh1llq")) + (base32 "08kppk49f9wmdf2gw29sm8pi027g54gzrqa07p8fpwvy0dv2sns4")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/node-xyz.scm b/gnu/packages/node-xyz.scm index b1d6d4ce59..f401380310 100644 --- a/gnu/packages/node-xyz.scm +++ b/gnu/packages/node-xyz.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> +;;; Copyright © 2021 Noisytoot <noisytoot@disroot.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -261,10 +262,39 @@ function with browser support.") "06biknqb05r9xsmcflm3ygh50pjvdk84x6r79w43kmck4fn3qn5p")))) (build-system node-build-system) (arguments - `(#:tests? #f)) ;; FIXME: Tests depend on node-tap + '(#:tests? #f ; FIXME: Tests depend on node-tap + #:phases + (modify-phases %standard-phases + ;; The only dependency to check for is tap, which we don't have. + (delete 'configure)))) (home-page "https://github.com/npm/node-semver") (synopsis "Parses semantic versions strings") (description "@code{node-semver} is a JavaScript implementation of the @uref{https://semver.org/, SemVer.org} specification.") (license license:isc))) + +(define-public node-wrappy + (package + (name "node-wrappy") + (version "1.0.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/npm/wrappy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1ymlc61cja6v5438vwb04gq8wg2b784lj39zf0g4i36fvgcw9783")))) + (build-system node-build-system) + (arguments + '(#:tests? #f ; FIXME: Tests depend on node-tap + #:phases + (modify-phases %standard-phases + ;; The only dependency to check for is tap, which we don't have. + (delete 'configure)))) + (home-page "https://github.com/npm/wrappy") + (synopsis "Callback wrapping utility") + (description "@code{wrappy} is a utility for Node.js to wrap callbacks.") + (license license:isc))) diff --git a/gnu/packages/node.scm b/gnu/packages/node.scm index a0df3d2cad..4e80dd4d4e 100644 --- a/gnu/packages/node.scm +++ b/gnu/packages/node.scm @@ -26,13 +26,15 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages node) - #:use-module ((guix licenses) #:select (expat)) + #:use-module ((guix licenses) #:prefix license:) #:use-module ((guix build utils) #:select (alist-replace)) #:use-module (guix packages) #:use-module (guix derivations) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system gnu) + #:use-module (guix build-system node) #:use-module (gnu packages) #:use-module (gnu packages adns) #:use-module (gnu packages base) @@ -41,6 +43,7 @@ #:use-module (gnu packages icu4c) #:use-module (gnu packages libevent) #:use-module (gnu packages linux) + #:use-module (gnu packages node-xyz) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) @@ -207,10 +210,511 @@ event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.") (home-page "https://nodejs.org/") - (license expat) + (license license:expat) (properties '((max-silent-time . 7200) ;2h, needed on ARM (timeout . 21600))))) ;6h +;; This should be the latest version of node that still builds without +;; depending on llhttp. +(define-public node-bootstrap + (hidden-package node)) + +;; Duplicate of node-semver +(define-public node-semver-bootstrap + (package + (name "node-semver") + (version "7.2.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/npm/node-semver") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "06biknqb05r9xsmcflm3ygh50pjvdk84x6r79w43kmck4fn3qn5p")))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://github.com/npm/node-semver") + (properties '((hidden? . #t))) + (synopsis "Parses semantic versions strings") + (description + "@code{node-semver} is a JavaScript implementation of the +@uref{https://semver.org/, SemVer.org} specification.") + (license license:isc))) + +(define-public node-ms-bootstrap + (package + (name "node-ms") + (version "2.1.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/vercel/ms.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1pjxzbi4j8pinlsc7yxvfrh0b47kb2dc4lfc2rjq4wx5bdwl33fj")))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://github.com/zeit/ms#readme") + (properties '((hidden? . #t))) + (synopsis "Tiny millisecond conversion utility") + (description "Use this package to easily convert various time +formats to milliseconds.") + (license license:expat))) + +(define-public node-binary-search-bootstrap + (package + (name "node-binary-search") + (version "1.3.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/darkskyapp/binary-search.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1xr2msdc143cd3xwgq7n3rhzy7j8wrnaidxl0r6l6b6g3mpbpjig")))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://github.com/darkskyapp/binary-search#readme") + (properties '((hidden? . #t))) + (synopsis "Tiny binary search function with comparators") + (description "This package is a binary search function for Node.js.") + (license license:cc0))) + +(define-public node-debug-bootstrap + (package + (name "node-debug") + (version "4.3.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/visionmedia/debug.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "08g52r1d4yqcsfdfb7n5if33d4cghaq75gx5n9hj6m6fd8jfp2pi")))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (inputs `(("node-ms" ,node-ms-bootstrap))) + (home-page "https://github.com/visionmedia/debug#readme") + (properties '((hidden? . #t))) + (synopsis "Small debugging utility") + (description "This package contains a tiny JavaScript debugging +utility modelled after Node.js core's debugging technique. It works in +Node.js and web browsers.") + (license license:expat))) + +(define-public node-llparse-builder-bootstrap + (package + (name "node-llparse-builder") + (version "1.5.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/indutny/llparse-builder.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0r82iiwqsb73k2fxw7842rjjiixllxpyc6yl9cq4ma6ybkf6xmzm")) + (modules '((guix build utils))) + (snippet + '(begin + ;; FIXME: Unneeded runtime dependency. + ;; https://github.com/indutny/llparse-builder/pull/2 + (substitute* "package.json" + (("\"@types/debug.*,") "")) + ;; Fix imports for esbuild. + ;; https://github.com/evanw/esbuild/issues/477 + (substitute* '("src/node/invoke.ts" + "src/node/base.ts" + "src/node/consume.ts" + "src/node/match.ts" + "src/node/error.ts" + "src/node/pause.ts" + "src/edge.ts" + "src/utils.ts" + "src/loop-checker/index.ts" + "src/loop-checker/lattice.ts" + "src/code/field.ts" + "src/span-allocator.ts") + (("\\* as assert") "assert") + (("\\* as debugAPI") "debugAPI")) + #t)))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda* (#:key inputs #:allow-other-keys) + (let ((esbuild (string-append (assoc-ref inputs "esbuild") + "/bin/esbuild"))) + (invoke esbuild + "--platform=node" + "--outfile=lib/builder.js" + "--bundle" + "src/builder.ts"))))))) + (inputs + `(("node-binary-search" ,node-binary-search-bootstrap) + ("node-debug" ,node-debug-bootstrap))) + (native-inputs + `(("esbuild" ,esbuild))) + (home-page "https://github.com/indutny/llparse-builder#readme") + (properties '((hidden? . #t))) + (synopsis "Graph builder for consumption by llparse") + (description "This package builds graphs for consumption by llparse.") + (license license:expat))) + +(define-public node-llparse-frontend-bootstrap + (package + (name "node-llparse-frontend") + (version "3.0.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/indutny/llparse-frontend.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1rm9g4ifyip30svm5cgnf0gx7d45jgh4mpf2hkd092xhngmfvicc")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Fix imports for esbuild. + ;; https://github.com/evanw/esbuild/issues/477 + (substitute* '("src/frontend.ts" + "src/code/field-value.ts" + "src/container/index.ts" + "src/container/wrap.ts" + "src/node/sequence.ts" + "src/node/single.ts" + "src/node/table-lookup.ts" + "src/trie/index.ts") + (("\\* as assert") "assert") + (("\\* as debugAPI") "debugAPI")) + #t)))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda* (#:key inputs #:allow-other-keys) + (let ((esbuild (string-append (assoc-ref inputs "esbuild") + "/bin/esbuild"))) + (invoke esbuild + "--platform=node" + "--outfile=lib/frontend.js" + "--bundle" + "src/frontend.ts"))))))) + (inputs + `(("node-debug" ,node-debug-bootstrap) + ("node-llparse-builder" ,node-llparse-builder-bootstrap))) + (native-inputs + `(("esbuild" ,esbuild))) + (home-page "https://github.com/indutny/llparse-frontend#readme") + (properties '((hidden? . #t))) + (synopsis "Frontend for the llparse compiler") + (description "This package is a frontend for the llparse compiler.") + (license license:expat))) + +(define-public node-llparse-bootstrap + (package + (name "node-llparse") + (version "7.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/indutny/llparse.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "10da273iy2if88hp79cwms6c8qpsl1fkgzll6gmqyx5yxv5mkyp6")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Fix imports for esbuild. + ;; https://github.com/evanw/esbuild/issues/477 + (substitute* '("src/compiler/index.ts" + "src/implementation/c/node/base.ts" + "src/implementation/c/node/table-lookup.ts" + "src/implementation/c/compilation.ts" + "src/implementation/c/helpers/match-sequence.ts" + "src/implementation/c/code/mul-add.ts") + (("\\* as assert") "assert") + (("\\* as debugAPI") "debugAPI")) + #t)))) + (build-system node-build-system) + (arguments + `(#:node ,node-bootstrap + #:tests? #f + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda* (#:key inputs #:allow-other-keys) + (let ((esbuild (string-append (assoc-ref inputs "esbuild") + "/bin/esbuild"))) + (invoke esbuild + "--platform=node" + "--outfile=lib/api.js" + "--bundle" + "src/api.ts"))))))) + (inputs + `(("node-debug" ,node-debug-bootstrap) + ("node-llparse-frontend" ,node-llparse-frontend-bootstrap))) + (native-inputs + `(("esbuild" ,esbuild))) + (home-page "https://github.com/nodejs/llparse#readme") + (properties '((hidden? . #t))) + (synopsis "Compile incremental parsers to C code") + (description "This package offers an API for compiling an incremental +parser definition into a C output.") + (license license:expat))) + +(define-public llhttp-bootstrap + (package + (name "llhttp") + (version "2.1.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/nodejs/llhttp.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0pqj7kyyzr1zs4h9yzn5rdxnxspm3wqgsv00765dd42fszlmrmk8")) + (patches (search-patches "llhttp-bootstrap-CVE-2020-8287.patch")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Fix imports for esbuild. + ;; https://github.com/evanw/esbuild/issues/477 + (substitute* "src/llhttp/http.ts" + (("\\* as assert") "assert")) + (substitute* "Makefile" + (("npx ts-node bin/generate.ts") + "node bin/generate.js")) + #t)))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; no tests + #:make-flags (list (string-append "CLANG=" ,(cc-for-target)) + (string-append "DESTDIR=" (assoc-ref %outputs "out")) + "PREFIX=") + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key inputs #:allow-other-keys) + (let ((esbuild (string-append (assoc-ref inputs "esbuild") + "/bin/esbuild"))) + (invoke esbuild + "--platform=node" + "--outfile=bin/generate.js" + "--bundle" "bin/generate.ts")))) + (add-before 'install 'create-install-directories + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (for-each (lambda (dir) + (mkdir-p (string-append out dir))) + (list "/lib" "/include" "/src")) + #t))) + (add-after 'install 'install-src + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (src-dir (string-append out "/src"))) + (install-file "build/c/llhttp.c" src-dir) + (install-file "src/native/api.c" src-dir) + (install-file "src/native/http.c" src-dir) + #t)))))) + (native-inputs + `(("esbuild" ,esbuild) + ("node" ,node-bootstrap) + ("node-semver" ,node-semver-bootstrap) + ("node-llparse-bootstrap" ,node-llparse-bootstrap))) + (home-page "https://github.com/nodejs/llhttp") + (properties '((hidden? . #t))) + (synopsis "Parser for HTTP messages") + (description "This is a rewrite of +@url{https://github.com/nodejs/http-parser, http-parser} using +@url{https://github.com/nodejs/llparse, llparse} to generate the C +source files.") + (license license:expat))) + +(define-public node-lts + (package + (inherit node) + (version "14.16.0") + (source (origin + (method url-fetch) + (uri (string-append "https://nodejs.org/dist/v" version + "/node-v" version ".tar.xz")) + (sha256 + (base32 + "19nz2mhmn6ikahxqyna1dn25pb5v3z9vsz9zb2flb6zp2yk4hxjf")) + (modules '((guix build utils))) + (snippet + `(begin + ;; Remove bundled software, where possible + (for-each delete-file-recursively + '("deps/cares" + "deps/icu-small" + "deps/nghttp2" + "deps/openssl" + "deps/zlib")) + (substitute* "Makefile" + ;; Remove references to bundled software. + (("deps/uv/uv.gyp") "") + (("deps/zlib/zlib.gyp") "")) + #t)))) + (arguments + (substitute-keyword-arguments (package-arguments node) + ((#:configure-flags configure-flags) + ''("--shared-cares" + "--shared-libuv" + "--shared-nghttp2" + "--shared-openssl" + "--shared-zlib" + "--shared-brotli" + "--with-intl=system-icu")) + ((#:phases phases) + `(modify-phases ,phases + (replace 'configure + ;; Node's configure script is actually a python script, so we can't + ;; run it with bash. + (lambda* (#:key outputs (configure-flags '()) inputs + #:allow-other-keys) + (let* ((prefix (assoc-ref outputs "out")) + (flags (cons (string-append "--prefix=" prefix) + configure-flags))) + (format #t "build directory: ~s~%" (getcwd)) + (format #t "configure flags: ~s~%" flags) + ;; Node's configure script expects the CC environment variable to + ;; be set. + (setenv "CC" ,(cc-for-target)) + (apply invoke + (string-append (assoc-ref inputs "python") + "/bin/python3") + "configure" flags)))) + (replace 'patch-files + (lambda* (#:key inputs #:allow-other-keys) + ;; Fix hardcoded /bin/sh references. + (substitute* '("lib/child_process.js" + "lib/internal/v8_prof_polyfill.js" + "test/parallel/test-child-process-spawnsync-shell.js" + "test/parallel/test-fs-write-sigxfsz.js" + "test/parallel/test-stdio-closed.js" + "test/sequential/test-child-process-emfile.js") + (("'/bin/sh'") + (string-append "'" (which "sh") "'"))) + + ;; Fix hardcoded /usr/bin/env references. + (substitute* '("test/parallel/test-child-process-default-options.js" + "test/parallel/test-child-process-env.js" + "test/parallel/test-child-process-exec-env.js") + (("'/usr/bin/env'") + (string-append "'" (which "env") "'"))) + + ;; FIXME: These tests fail in the build container, but they don't + ;; seem to be indicative of real problems in practice. + (for-each delete-file + '("test/parallel/test-cluster-master-error.js" + "test/parallel/test-cluster-master-kill.js")) + + ;; These require a DNS resolver. + (for-each delete-file + '("test/parallel/test-dns.js" + "test/parallel/test-dns-lookupService-promises.js")) + + ;; FIXME: This test fails randomly: + ;; https://github.com/nodejs/node/issues/31213 + (delete-file "test/parallel/test-net-listen-after-destroying-stdin.js") + + ;; FIXME: These tests fail on armhf-linux: + ;; https://github.com/nodejs/node/issues/31970 + ,@(if (target-arm32?) + '((for-each delete-file + '("test/parallel/test-zlib.js" + "test/parallel/test-zlib-brotli.js" + "test/parallel/test-zlib-brotli-flush.js" + "test/parallel/test-zlib-brotli-from-brotli.js" + "test/parallel/test-zlib-brotli-from-string.js" + "test/parallel/test-zlib-convenience-methods.js" + "test/parallel/test-zlib-random-byte-pipes.js" + "test/parallel/test-zlib-write-after-flush.js"))) + '()) + + ;; These tests have an expiry date: they depend on the validity of + ;; TLS certificates that are bundled with the source. We want this + ;; package to be reproducible forever, so remove those. + ;; TODO: Regenerate certs instead. + (for-each delete-file + '("test/parallel/test-tls-passphrase.js" + "test/parallel/test-tls-server-verify.js")) + + ;; Replace pre-generated llhttp sources + (let ((llhttp (assoc-ref inputs "llhttp"))) + (copy-file (string-append llhttp "/src/llhttp.c") + "deps/llhttp/src/llhttp.c") + (copy-file (string-append llhttp "/src/api.c") + "deps/llhttp/src/api.c") + (copy-file (string-append llhttp "/src/http.c") + "deps/llhttp/src/http.c") + (copy-file (string-append llhttp "/include/llhttp.h") + "deps/llhttp/include/llhttp.h")) + #t)))))) + (inputs + `(("c-ares" ,c-ares) + ("icu4c" ,icu4c-67) + ("libuv" ,libuv-for-node) + ("llhttp" ,llhttp-bootstrap) + ("google-brotli" ,google-brotli) + ("nghttp2" ,nghttp2 "lib") + ("openssl" ,openssl) + ("zlib" ,zlib))) + (native-inputs + (alist-replace "python" (list python-3) + (package-native-inputs node))))) + (define-public libnode (package/inherit node (name "libnode") diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm index 086f3b048a..44ca0c67e2 100644 --- a/gnu/packages/ocaml.scm +++ b/gnu/packages/ocaml.scm @@ -19,6 +19,7 @@ ;;; Copyright © 2020 divoplade <d@divoplade.fr> ;;; Copyright © 2020 pukkamustard <pukkamustard@posteo.net> ;;; Copyright © 2021 aecepoglu <aecepoglu@fastmail.fm> +;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -158,7 +159,7 @@ (properties `((max-silent-time . 14400))) ; 4 hours, expected even on x86_64 (home-page "https://github.com/Ekdohibs/camlboot") - (synopsis "OCaml souce bootstrap") + (synopsis "OCaml source bootstrap") (description "OCaml is written in OCaml. Its sources contain a pre-compiled bytecode version of @command{ocamlc} and @command{ocamllex} that are used to build the next version of the compiler. Camlboot implements a bootstrap for @@ -466,6 +467,71 @@ depend: $(STDLIB_MLIS) $(STDLIB_DEPS)")) for building OCaml library and programs.") (license license:lgpl2.1+))) +(define-public camlidl + (package + (name "camlidl") + (version "1.09") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xavierleroy/camlidl") + (commit "camlidl109"))) + (sha256 + (base32 "0zrkaq7fk23b2b9vg6jwdjx7l0hdqp4synbbrw1zcg8gjf6n3c80")) + (file-name (git-file-name name version)))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;; No test suite + #:make-flags + (list + (string-append + "BINDIR=" (assoc-ref %outputs "out") "/bin") + (string-append + "OCAMLLIB=" (assoc-ref %outputs "out") "/lib/ocaml/site-lib/camlidl")) + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda _ + (copy-file "config/Makefile.unix" "config/Makefile") + ;; Note: do not pass '-jN' as this appears to not be + ;; parallel-safe (race condition related to libcamlidl.a). + (invoke "make" "all") + #t)) + (add-before 'install 'create-target-directories + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (string-append (assoc-ref outputs "out")))) + (mkdir-p + (string-append out "/bin")) + (mkdir-p + (string-append out "/lib/ocaml/site-lib/camlidl/stublibs")) + (mkdir-p + (string-append out "/lib/ocaml/site-lib/camlidl/caml"))) + #t)) + (add-after 'install 'install-meta + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (with-output-to-file + (string-append out "/lib/ocaml/site-lib/camlidl/META") + (lambda _ + (display + (string-append + "description = \"Stub code generator for OCaml/C interface\" +version = \"" ,version "\" +directory = \"^\" +archive(byte) = \"com.cma\" +archive(native) = \"com.cmxa\""))))) + #t))))) + (native-inputs + `(("ocaml" ,ocaml))) + (home-page "https://github.com/xavierleroy/camlidl") + (synopsis "Stub code generator for OCaml/C interface") + (description + "Camlidl is a stub code generator for Objective Caml. It generates stub +code for interfacing Caml with C from an IDL description of the C functions.") + (license license:lgpl2.1))) + (define-public ocaml-extlib (package (name "ocaml-extlib") diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index 26b275e0fd..1e3ad1057a 100644 --- a/gnu/packages/openstack.scm +++ b/gnu/packages/openstack.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2016, 2017, 2019 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com> -;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. @@ -307,8 +307,15 @@ to docs.openstack.org and developer.openstack.org.") (arguments ;; The tests are disabled to avoid a circular dependency with ;; python-stestr. - `(#:tests? #f)) - (native-inputs + `(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'use-pbr-3 + (lambda _ + (substitute* '("setup.py" + "requirements.txt") + (("pbr!=2.1.0,>=2.0.0") "pbr>=3.0.0"))))))) + (propagated-inputs `(("python-pbr" ,python-pbr))) (home-page "https://github.com/dreamhost/stevedore") (synopsis "Manage dynamic plugins for Python applications") diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 888f54322d..08050e9747 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -132,8 +132,8 @@ ;; Note: the 'update-guix-package.scm' script expects this definition to ;; start precisely like this. (let ((version "1.2.0") - (commit "ec7fb669945bfb47c5e1fdf7de3a5d07f7002ccf") - (revision 17)) + (commit "4dff6ecde85eec473ab231cf75f51e98e8aca1e9") + (revision 21)) (package (name "guix") @@ -149,7 +149,7 @@ (commit commit))) (sha256 (base32 - "1v9pwsqx8n4l6f7aj9vxv6m7vb4lyw8j5qg6mxf5zksia0qlcv2z")) + "1n16j7rb4n4pjmp8ck5g206rphmzxii2mbyz1nk4qk70zc3mwszq")) (file-name (string-append "guix-" version "-checkout")))) (build-system gnu-build-system) (arguments @@ -212,7 +212,7 @@ $(prefix)/etc/init.d\n"))) (substitute* "nix/local.mk" (("^openrcservicedir = .*$") (string-append "openrcservicedir = \ -$(prefix)/etc/init.d\n"))) +$(prefix)/etc/openrc\n"))) (invoke "sh" "bootstrap"))) (add-before 'build 'use-host-compressors @@ -1049,8 +1049,8 @@ environments.") (license (list license:gpl3+ license:agpl3+ license:silofl1.1)))) (define-public guix-build-coordinator - (let ((commit "1f79fc38a17ceda30f378efd4e7f80f252c99b4d") - (revision "20")) + (let ((commit "6fb5eafc33efa109b220efe71594cfcdb2efe133") + (revision "24")) (package (name "guix-build-coordinator") (version (git-version "0" revision commit)) @@ -1061,7 +1061,7 @@ environments.") (commit commit))) (sha256 (base32 - "0d5zr5mv07pi195vva2fhclfgyzrgbk9vlnwrmy7z1jcw2p1d2zp")) + "1lf7jry18kwglvyakfkmi8bif8ppsdinl0xjgmkgkp4mvmymh2gj")) (file-name (string-append name "-" version "-checkout")))) (build-system gnu-build-system) (arguments @@ -1088,14 +1088,18 @@ environments.") (for-each (lambda (file) (simple-format (current-error-port) "wrapping: ~A\n" file) - (let ((guile-inputs `("guile-json" - "guile-gcrypt" - "guix" - "guile-prometheus" - "guile-lib" - "guile-lzlib" - "guile-zlib" - "gnutls"))) + (let ((guile-inputs (list + "guile-json" + "guile-gcrypt" + "guix" + "guile-prometheus" + "guile-lib" + "guile-lzlib" + "guile-zlib" + "gnutls" + ,@(if (hurd-target?) + '() + '("guile-fibers"))))) (wrap-program file `("PATH" ":" prefix (,bin diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm index 3969b23f1e..6b1b32b147 100644 --- a/gnu/packages/password-utils.scm +++ b/gnu/packages/password-utils.scm @@ -179,37 +179,6 @@ algorithms AES or Twofish.") ;; the combined work falls under the GPLv3. (license license:gpl3))) -(define-public keepassx - (package - (name "keepassx") - (version "2.0.3") - (source - (origin - (method url-fetch) - (uri (string-append "https://www.keepassx.org/releases/" version - "/keepassx-" version ".tar.gz")) - (sha256 - (base32 - "1ia7cqx9ias38mnffsl7da7g1f66bcbjsi23k49sln0c6spb9zr3")))) - (build-system cmake-build-system) - (inputs - `(("libgcrypt" ,libgcrypt) - ("libxi" ,libxi) - ("libxtst" ,libxtst) - ("qt" ,qt-4))) - (native-inputs - `(("zlib" ,zlib))) - (home-page "https://www.keepassx.org") - (synopsis "Password manager") - (description "KeePassX is a password manager or safe which helps you to -manage your passwords in a secure way. You can put all your passwords in one -database, which is locked with one master key or a key-file which can be stored -on an external storage device. The databases are encrypted using the -algorithms AES or Twofish.") - ;; Non functional parts use various licences. - (license license:gpl3) - (properties `((superseded . ,keepassxc))))) - (define-public pwsafe (package (name "pwsafe") diff --git a/gnu/packages/patches/calibre-no-updates-dialog.patch b/gnu/packages/patches/calibre-no-updates-dialog.patch index 1d8d79660e..66ac913cb5 100644 --- a/gnu/packages/patches/calibre-no-updates-dialog.patch +++ b/gnu/packages/patches/calibre-no-updates-dialog.patch @@ -1,11 +1,17 @@ -Taken from debian. +From 19e8d7701c302b0eca4c638705a6db625352caa3 Mon Sep 17 00:00:00 2001 +From: Brendan Tildesley <mail@brendan.scot> +Date: Thu, 25 Feb 2021 12:17:30 +1100 +Subject: [PATCH] Don't check for updates. -# Description: Disable update check by default. -Index: calibre/src/calibre/gui2/main.py -=================================================================== ---- calibre.orig/src/calibre/gui2/main.py 2014-02-02 10:41:28.470954623 +0100 -+++ calibre/src/calibre/gui2/main.py 2014-02-02 10:41:56.546954247 +0100 -@@ -37,8 +37,8 @@ +--- + src/calibre/gui2/main.py | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/src/calibre/gui2/main.py b/src/calibre/gui2/main.py +index 776f8bebfb..4302716d7e 100644 +--- a/src/calibre/gui2/main.py ++++ b/src/calibre/gui2/main.py +@@ -59,8 +59,8 @@ def option_parser(): help=_('Start minimized to system tray.')) parser.add_option('-v', '--verbose', default=0, action='count', help=_('Ignored, do not use. Present only for legacy reasons')) @@ -16,3 +22,5 @@ Index: calibre/src/calibre/gui2/main.py parser.add_option('--ignore-plugins', default=False, action='store_true', help=_('Ignore custom plugins, useful if you installed a plugin' ' that is preventing calibre from starting')) +-- +2.30.1 diff --git a/gnu/packages/patches/calibre-remove-test-sqlite.patch b/gnu/packages/patches/calibre-remove-test-sqlite.patch index 7bdd90874d..fc2b237ef2 100644 --- a/gnu/packages/patches/calibre-remove-test-sqlite.patch +++ b/gnu/packages/patches/calibre-remove-test-sqlite.patch @@ -1,20 +1,20 @@ -From a92e26359bd07743ab105819ed0b619e27e14017 Mon Sep 17 00:00:00 2001 +From d8225e83c3b73f0e0da73874910f50ca652f48cf Mon Sep 17 00:00:00 2001 From: Brendan Tildesley <mail@brendan.scot> -Date: Sat, 27 Apr 2019 03:30:53 +1000 -Subject: [PATCH] Disable test_sqlite. +Date: Thu, 25 Feb 2021 00:48:00 +1100 +Subject: [PATCH] Remove test_sqlite --- src/calibre/test_build.py | 6 ------ 1 file changed, 6 deletions(-) diff --git a/src/calibre/test_build.py b/src/calibre/test_build.py -index 07bdffd3e5..740588c95b 100644 +index 0ab7aa0646..87fdfabd9a 100644 --- a/src/calibre/test_build.py +++ b/src/calibre/test_build.py -@@ -162,12 +162,6 @@ class BuildTest(unittest.TestCase): - au(x, 'strftime') - self.assertEqual(unicode_type(time.strftime(fmt.replace('%e', '%#d'), t)), x) - +@@ -273,12 +273,6 @@ def read_changes(): + m.close() + self.assertEqual(winutil.parse_cmdline('"c:\\test exe.exe" "some arg" 2'), ('c:\\test exe.exe', 'some arg', '2')) + - def test_sqlite(self): - import sqlite3 - conn = sqlite3.connect(':memory:') @@ -24,6 +24,5 @@ index 07bdffd3e5..740588c95b 100644 def test_apsw(self): import apsw conn = apsw.Connection(':memory:') --- -2.21.0 - +-- +2.30.1 diff --git a/gnu/packages/patches/calibre-remove-test-unrar.patch b/gnu/packages/patches/calibre-remove-test-unrar.patch index 4e5572d1a6..961cc3eba7 100644 --- a/gnu/packages/patches/calibre-remove-test-unrar.patch +++ b/gnu/packages/patches/calibre-remove-test-unrar.patch @@ -1,28 +1,26 @@ -Unrar contains security vulnerabilities and has thus been removed from Guix. -From a16f97b02bd8afd0ec05c471e156f631f2cc6eec Mon Sep 17 00:00:00 2001 +From 9edf67191cc3655480b6fd418247709ade930b1a Mon Sep 17 00:00:00 2001 From: Brendan Tildesley <mail@brendan.scot> -Date: Tue, 26 Mar 2019 22:17:03 +1100 -Subject: [PATCH] Remove test_unrar. +Date: Thu, 25 Feb 2021 00:33:10 +1100 +Subject: [PATCH] Remove test_unrar --- src/calibre/test_build.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/src/calibre/test_build.py b/src/calibre/test_build.py -index d67afd20a6..709132ef17 100644 +index b37fb1bcfb..0ab7aa0646 100644 --- a/src/calibre/test_build.py +++ b/src/calibre/test_build.py -@@ -220,10 +220,6 @@ class BuildTest(unittest.TestCase): +@@ -369,10 +369,6 @@ def test_file_dialog_helper(self): from calibre.gui2.win_file_dialogs import test test() - + - def test_unrar(self): - from calibre.utils.unrar import test_basic - test_basic() - - @unittest.skipUnless(iswindows, 'WPD is windows only') - def test_wpd(self): - wpd = plugins['wpd'][0] --- -2.21.0 - + def test_7z(self): + from calibre.utils.seven_zip import test_basic + test_basic() +-- +2.30.1 diff --git a/gnu/packages/patches/chez-scheme-build-util-paths-backport.patch b/gnu/packages/patches/chez-scheme-build-util-paths-backport.patch new file mode 100644 index 0000000000..aad2d99996 --- /dev/null +++ b/gnu/packages/patches/chez-scheme-build-util-paths-backport.patch @@ -0,0 +1,780 @@ +From 2447e047b750c3371778beb487f881641a582e66 Mon Sep 17 00:00:00 2001 +From: Philip McGrath <philip@philipmcgrath.com> +Date: Thu, 11 Mar 2021 18:17:47 -0500 +Subject: [PATCH] avoid hard-coded paths for utilities in build scripts + +Backported from +https://github.com/cisco/ChezScheme/commit/8f4633ce24ac6425b2ab13cc78026b1c9bb5361e + +Specific changes: + - `cc` -> `$(CC)` + - `/bin/rm` -> `rm` + - `/bin/ln` -> `ln` + - `/bin/cp` -> `cp` + - `/bin/echo` -> `echo` + - in `makefiles/installsh`, add a case to find `true` + at an unusual path or as a shell builtin + +Co-authored-by: Andy Keep <akeep@robotman.org> +--- + LOG | 12 ++++++++++++ + csug/gifs/Makefile | 8 ++++---- + csug/math/Makefile | 4 ++-- + examples/Makefile | 2 +- + makefiles/Makefile-csug.in | 6 +++--- + makefiles/Makefile-release_notes.in | 2 +- + makefiles/Mf-install.in | 4 ++-- + makefiles/installsh | 3 ++- + mats/6.ms | 2 +- + mats/Mf-a6fb | 4 ++-- + mats/Mf-a6le | 4 ++-- + mats/Mf-a6nb | 4 ++-- + mats/Mf-a6ob | 4 ++-- + mats/Mf-a6osx | 4 ++-- + mats/Mf-arm32le | 4 ++-- + mats/Mf-i3fb | 4 ++-- + mats/Mf-i3le | 4 ++-- + mats/Mf-i3nb | 4 ++-- + mats/Mf-i3ob | 4 ++-- + mats/Mf-i3osx | 4 ++-- + mats/Mf-i3qnx | 4 ++-- + mats/Mf-ppc32le | 4 ++-- + mats/Mf-ta6fb | 4 ++-- + mats/Mf-ta6le | 4 ++-- + mats/Mf-ta6nb | 4 ++-- + mats/Mf-ta6ob | 4 ++-- + mats/Mf-ta6osx | 4 ++-- + mats/Mf-ti3fb | 4 ++-- + mats/Mf-ti3le | 4 ++-- + mats/Mf-ti3nb | 4 ++-- + mats/Mf-ti3ob | 4 ++-- + mats/Mf-ti3osx | 4 ++-- + mats/Mf-tppc32le | 4 ++-- + mats/unix.ms | 4 ++-- + newrelease | 22 +++++++++++----------- + pkg/Makefile | 2 +- + release_notes/gifs/Makefile | 6 +++--- + release_notes/math/Makefile | 4 ++-- + s/Mf-base | 2 +- + workarea | 10 +++++----- + 40 files changed, 101 insertions(+), 88 deletions(-) + +diff --git a/LOG b/LOG +index e1631df..399104d 100644 +--- a/LOG ++++ b/LOG +@@ -2119,3 +2119,15 @@ + bintar/Makefile rpm/Makefile pkg/Makefile wininstall/Makefile + wininstall/a6nt.wxs wininstall/i3nt.wxs wininstall/ta6nt.wxs + wininstall/ti3nt.wxs ++9.5.5 changes: ++- avoid hard-coded paths for utilities in build scripts ++ checkin csug/gifs/Makefile csug/math/Makefile examples/Makefile ++ makefiles/Makefile-csug.in makefiles/Makefile-release_notes.in ++ makefiles/Mf-install.in makefiles/installsh mats/6.ms mats/Mf-a6fb ++ mats/Mf-a6le mats/Mf-a6nb mats/Mf-a6ob mats/Mf-a6osx mats/Mf-arm32le ++ mats/Mf-i3fb mats/Mf-i3le mats/Mf-i3nb mats/Mf-i3ob mats/Mf-i3osx ++ mats/Mf-i3qnx mats/Mf-ppc32le mats/Mf-ta6fb mats/Mf-ta6le mats/Mf-ta6nb ++ mats/Mf-ta6ob mats/Mf-ta6osx mats/Mf-ti3fb mats/Mf-ti3le mats/Mf-ti3nb ++ mats/Mf-ti3ob mats/Mf-ti3osx mats/Mf-tppc32le mats/unix.ms newrelease ++ pkg/Makefile release_notes/gifs/Makefile release_notes/math/Makefile ++ s/Mf-base workarea +diff --git a/csug/gifs/Makefile b/csug/gifs/Makefile +index 8676e4c..4253ffd 100644 +--- a/csug/gifs/Makefile ++++ b/csug/gifs/Makefile +@@ -18,7 +18,7 @@ density=-r90x90 + ${density} - |\ + pnmcrop |\ + ppmtogif -transparent white > $*.gif +- /bin/rm -f $*.dvi $*.log *.aux ++ rm -f $*.dvi $*.log *.aux + test -f $*.gif && chmod 644 $*.gif + + # translate ps file to gif w/o transparent white background +@@ -28,7 +28,7 @@ density=-r90x90 + ${density} - |\ + pnmcrop |\ + ppmtogif > $*.gif +- /bin/rm -f $*.dvi $*.log *.aux ++ rm -f $*.dvi $*.log *.aux + test -f $*.gif && chmod 644 $*.gif + + all: ${gifs} +@@ -57,7 +57,7 @@ ghostRightarrow.gif: Rightarrow.tex + giftrans -g '#000000=#ffffff' |\ + giftopnm |\ + ppmtogif -transparent white > $*.gif +- /bin/rm -f Rightarrow.dvi Rightarrow.log Rightarrow.aux ++ rm -f Rightarrow.dvi Rightarrow.log Rightarrow.aux + test -f $*.gif && chmod 644 $*.gif + +-clean: ; /bin/rm -f *.gif Make.out ++clean: ; rm -f *.gif Make.out +diff --git a/csug/math/Makefile b/csug/math/Makefile +index 3385fdb..3392ea8 100644 +--- a/csug/math/Makefile ++++ b/csug/math/Makefile +@@ -15,11 +15,11 @@ density=-r90x90 + ${density} - |\ + pnmcrop |\ + ppmtogif -transparent white > $*.gif +- /bin/rm -f $*.dvi $*.log $*.aux ++ rm -f $*.dvi $*.log $*.aux + test -f $*.gif && chmod 644 $*.gif + + all: ${gifs} + + ${gifs}: mathmacros + +-clean: ; /bin/rm -f *.gif Make.out ++clean: ; rm -f *.gif Make.out +diff --git a/examples/Makefile b/examples/Makefile +index b1b4e1d..3edfdd0 100644 +--- a/examples/Makefile ++++ b/examples/Makefile +@@ -25,4 +25,4 @@ needed: ${obj} + + all: ; echo "(time (for-each compile-file (map symbol->string '(${src}))))" | ${Scheme} + +-clean: ; /bin/rm -f $(obj) expr.md ++clean: ; rm -f $(obj) expr.md +diff --git a/makefiles/Makefile-csug.in b/makefiles/Makefile-csug.in +index df24092..6f8a8d9 100644 +--- a/makefiles/Makefile-csug.in ++++ b/makefiles/Makefile-csug.in +@@ -29,7 +29,7 @@ install: target + # thrice is not enough when starting from scratch + logcheck1: $(x).thirdrun + @if [ -n "`grep 'Warning: Label(s) may have changed' $(x).log`" ] ; then\ +- /bin/rm -f $(x).thirdrun ;\ ++ rm -f $(x).thirdrun ;\ + $(MAKE) $(x).thirdrun;\ + fi + +@@ -55,7 +55,7 @@ stexsrc = csug.stex title.stex copyright.stex contents.stex\ + texsrc = ${stexsrc:%.stex=%.tex} + + title.tex contents.tex bibliography.tex: +- /bin/rm -f $*.tex ++ rm -f $*.tex + echo "%%% DO NOT EDIT THIS FILE" > $*.tex + echo "%%% Edit the .stex version instead" >> $*.tex + echo "" >> $*.tex +@@ -147,7 +147,7 @@ code: $(stexsrc) + echo '(load "code" pretty-print)' | $(Scheme) -q + + $(x).clean: +- -/bin/rm -f $(x).rfm $(x).sfm $(x).prefirstrun $(x).presecondrun\ ++ -rm -f $(x).rfm $(x).sfm $(x).prefirstrun $(x).presecondrun\ + $(x).prethirdrun $(x).ans\ + $(x).hprefirstrun $(x).hpresecondrun $(x).hprethirdrun\ + tspl.aux tspl.haux tspl.rfm tspl.idx in.hidx\ +diff --git a/makefiles/Makefile-release_notes.in b/makefiles/Makefile-release_notes.in +index 4435b6f..64348a4 100644 +--- a/makefiles/Makefile-release_notes.in ++++ b/makefiles/Makefile-release_notes.in +@@ -38,7 +38,7 @@ install: $x.pdf $x.html + $(INSTALL) -m 2755 -d $(installdir)/gifs + $(INSTALL) -m 0644 --ifdiff gifs/*.gif $(installdir)/gifs + $(INSTALL) -m 2755 -d $(installdir)/math +- -/bin/rm -rf $(installdir)/$(mathdir) ++ -rm -rf $(installdir)/$(mathdir) + $(INSTALL) -m 2755 -d $(installdir)/$(mathdir) + if [ -e $(mathdir)/0.gif ] ; then $(INSTALL) -m 0644 $(mathdir)/*.gif $(installdir)/$(mathdir) ; fi + +diff --git a/makefiles/Mf-install.in b/makefiles/Mf-install.in +index a702c34..c09043d 100644 +--- a/makefiles/Mf-install.in ++++ b/makefiles/Mf-install.in +@@ -114,12 +114,12 @@ bininstall: ${Bin} + libbininstall: ${LibBin} + $I -m 444 ${PetiteBoot} ${LibBin}/petite.boot + if [ "${InstallPetiteName}" != "petite" ]; then\ +- /bin/rm -f ${LibBin}/${InstallPetiteName}.boot;\ ++ rm -f ${LibBin}/${InstallPetiteName}.boot;\ + ln -f ${LibBin}/petite.boot ${LibBin}/${InstallPetiteName}.boot;\ + fi + $I -m 444 ${SchemeBoot} ${LibBin}/scheme.boot;\ + if [ "${InstallSchemeName}" != "scheme" ]; then\ +- /bin/rm -f ${LibBin}/${InstallSchemeName}.boot;\ ++ rm -f ${LibBin}/${InstallSchemeName}.boot;\ + ln -f ${LibBin}/scheme.boot ${LibBin}/${InstallSchemeName}.boot;\ + fi + ln -f ${LibBin}/scheme.boot ${LibBin}/${InstallScriptName}.boot; +diff --git a/makefiles/installsh b/makefiles/installsh +index 48f1e46..95d85fb 100755 +--- a/makefiles/installsh ++++ b/makefiles/installsh +@@ -1,7 +1,8 @@ + #! /bin/sh + if [ -x /bin/true ]; then TRUE=/bin/true; + elif [ -x /usr/bin/true ]; then TRUE=/usr/bin/true; +-else echo "Can't find /bin/true or /usr/bin/true" ; exit 1; ++elif command -v true &> /dev/null; then TRUE=true; ++else echo "Can't find /bin/true or /usr/bin/true and no true command" ; exit 1; + fi + + while ${TRUE} ; do +diff --git a/mats/6.ms b/mats/6.ms +index 102f84b..e504230 100644 +--- a/mats/6.ms ++++ b/mats/6.ms +@@ -2685,7 +2685,7 @@ + (begin + (system "ln -s ../examples .") + (load "examples/fatfib.ss" compile) +- (system "/bin/rm examples") ++ (system "rm -f examples") + #t)) + (or (windows?) (embedded?) + (equal? +diff --git a/mats/Mf-a6fb b/mats/Mf-a6fb +index b16d1b6..ff9e687 100644 +--- a/mats/Mf-a6fb ++++ b/mats/Mf-a6fb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-a6le b/mats/Mf-a6le +index d6fee09..a3bda76 100644 +--- a/mats/Mf-a6le ++++ b/mats/Mf-a6le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m64 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m64 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-a6nb b/mats/Mf-a6nb +index 48187ef..0f7ac17 100644 +--- a/mats/Mf-a6nb ++++ b/mats/Mf-a6nb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-a6ob b/mats/Mf-a6ob +index 12758f3..0ffcccc 100644 +--- a/mats/Mf-a6ob ++++ b/mats/Mf-a6ob +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-a6osx b/mats/Mf-a6osx +index f1dbf85..57bac22 100644 +--- a/mats/Mf-a6osx ++++ b/mats/Mf-a6osx +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m64 -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m64 -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-arm32le b/mats/Mf-arm32le +index f33a665..83896eb 100644 +--- a/mats/Mf-arm32le ++++ b/mats/Mf-arm32le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -fomit-frame-pointer -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -fomit-frame-pointer -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-i3fb b/mats/Mf-i3fb +index 150cedb..1e4e8fc 100644 +--- a/mats/Mf-i3fb ++++ b/mats/Mf-i3fb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-i3le b/mats/Mf-i3le +index 8f521c8..b248620 100644 +--- a/mats/Mf-i3le ++++ b/mats/Mf-i3le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-i3nb b/mats/Mf-i3nb +index e81f6ff..8afeb5c 100644 +--- a/mats/Mf-i3nb ++++ b/mats/Mf-i3nb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-i3ob b/mats/Mf-i3ob +index 4e3ee1b..fcd4dee 100644 +--- a/mats/Mf-i3ob ++++ b/mats/Mf-i3ob +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-i3osx b/mats/Mf-i3osx +index 53c7d4a..a55f6ee 100644 +--- a/mats/Mf-i3osx ++++ b/mats/Mf-i3osx +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-i3qnx b/mats/Mf-i3qnx +index 724f2db..3e1437a 100644 +--- a/mats/Mf-i3qnx ++++ b/mats/Mf-i3qnx +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ppc32le b/mats/Mf-ppc32le +index 28151a8..547ca00 100644 +--- a/mats/Mf-ppc32le ++++ b/mats/Mf-ppc32le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ta6fb b/mats/Mf-ta6fb +index 921d609..5ed233e 100644 +--- a/mats/Mf-ta6fb ++++ b/mats/Mf-ta6fb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ta6le b/mats/Mf-ta6le +index cd014ec..21c686a 100644 +--- a/mats/Mf-ta6le ++++ b/mats/Mf-ta6le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m64 -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m64 -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ta6nb b/mats/Mf-ta6nb +index 6b1929d..9b9b898 100644 +--- a/mats/Mf-ta6nb ++++ b/mats/Mf-ta6nb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ta6ob b/mats/Mf-ta6ob +index a7aee91..8f25aed 100644 +--- a/mats/Mf-ta6ob ++++ b/mats/Mf-ta6ob +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ta6osx b/mats/Mf-ta6osx +index 42da5d7..0dd386f 100644 +--- a/mats/Mf-ta6osx ++++ b/mats/Mf-ta6osx +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m64 -pthread -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m64 -pthread -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ti3fb b/mats/Mf-ti3fb +index c891145..56bf7d3 100644 +--- a/mats/Mf-ti3fb ++++ b/mats/Mf-ti3fb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ti3le b/mats/Mf-ti3le +index 12e77b8..22b4148 100644 +--- a/mats/Mf-ti3le ++++ b/mats/Mf-ti3le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ti3nb b/mats/Mf-ti3nb +index 028c652..573946e 100644 +--- a/mats/Mf-ti3nb ++++ b/mats/Mf-ti3nb +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ti3ob b/mats/Mf-ti3ob +index 8a4741c..4472b60 100644 +--- a/mats/Mf-ti3ob ++++ b/mats/Mf-ti3ob +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-ti3osx b/mats/Mf-ti3osx +index 6913c34..9273b44 100644 +--- a/mats/Mf-ti3osx ++++ b/mats/Mf-ti3osx +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -pthread -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -pthread -dynamiclib -undefined dynamic_lookup -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/Mf-tppc32le b/mats/Mf-tppc32le +index a12b515..8b9d9f0 100644 +--- a/mats/Mf-tppc32le ++++ b/mats/Mf-tppc32le +@@ -21,7 +21,7 @@ fobj = foreign1.so + include Mf-base + + foreign1.so: ${fsrc} ../boot/$m/scheme.h +- cc -m32 -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} ++ $(CC) -m32 -pthread -fPIC -shared -I${Include} -o foreign1.so ${fsrc} + + cat_flush: cat_flush.c +- cc -o cat_flush cat_flush.c ++ $(CC) -o cat_flush cat_flush.c +diff --git a/mats/unix.ms b/mats/unix.ms +index cfba3e7..db7f6f9 100644 +--- a/mats/unix.ms ++++ b/mats/unix.ms +@@ -72,8 +72,8 @@ + (mat system + (eqv? (with-output-to-file "testfile.ss" void '(replace)) (void)) + (begin +- (system (format "~:[~;/pkg~]/bin/rm testfile.ss" (embedded?))) +- (system (format "~:[~;/pkg~]/bin/echo hello > testfile.ss" (embedded?))) ++ (system "rm -f testfile.ss") ++ (system "echo hello > testfile.ss") + (let ([p (open-input-file "testfile.ss")]) + (and (eq? (read p) 'hello) + (begin (close-input-port p) #t)))) +diff --git a/newrelease b/newrelease +index e903956..2d06740 100755 +--- a/newrelease ++++ b/newrelease +@@ -75,13 +75,13 @@ if ($status != 0) exit 1 + + cd $W + +-/bin/rm -f BUILDING ++rm -f BUILDING + sed -e "s/Chez Scheme Version [^ ]*/Chez Scheme Version $R/" \ + -e "s/Copyright 1984-.... /Copyright 1984-`date +%Y` /" \ + ../BUILDING > BUILDING + set updatedfiles = ($updatedfiles BUILDING) + +-/bin/rm -f NOTICE ++rm -f NOTICE + sed -e "s/Chez Scheme Version [^ ]*/Chez Scheme Version $R/" \ + -e "s/Copyright 1984-.... /Copyright 1984-`date +%Y` /" \ + ../NOTICE > NOTICE +@@ -92,19 +92,19 @@ sed -e "s/csv[0-9]\.[0-9]\(\.[0-9]\)*/csv$R/" ../makefiles/Mf-install.in > makef + sed -e "s/csug[0-9]\.[0-9]/csug$MR.$mR/" -e "s/csug[0-9]_[0-9]/csug$MR""_$mR/" ../makefiles/Makefile-csug.in > makefiles/Makefile-csug.in + set updatedfiles = ($updatedfiles makefiles/Mf-install.in makefiles/Makefile-csug.in) + +-/bin/rm scheme.1.in ++rm -f scheme.1.in + sed -e "s/Chez Scheme Version [0-9]\.[0-9]\(\.[0-9]\)* .* [0-9][0-9]*/Chez Scheme Version $R `date +'%B %Y'`/" \ + -e "s/Copyright .* Cisco Systems, Inc./Copyright `date +%Y` Cisco Systems, Inc./" \ + ../scheme.1.in > scheme.1.in + set updatedfiles = ($updatedfiles scheme.1.in) + +-/bin/rm -f c/Makefile.{,t}{i3,a6}nt ++rm -f c/Makefile.{,t}{i3,a6}nt + foreach fn (c/Makefile.{,t}{a6,i3}nt) + set updatedfiles = ($updatedfiles $fn) + sed -e "s/csv[0-9][0-9][0-9]*/csv$ZR/g" ../$fn > $fn + end + +-/bin/rm -f mats/Mf-{,t}{i3,a6}nt ++rm -f mats/Mf-{,t}{i3,a6}nt + foreach fn (mats/Mf-{,t}{a6,i3}nt) + set updatedfiles = ($updatedfiles $fn) + sed -e "s/csv[0-9][0-9][0-9]*/csv$ZR/g" ../$fn > $fn +@@ -123,11 +123,11 @@ sed -e "s/FILEVERSION .*/FILEVERSION $RCVERSION/"\ + -e "s/Copyright 1984-..../Copyright 1984-`date +%Y`/g" ../c/scheme.rc > c/scheme.rc + set updatedfiles = ($updatedfiles c/scheme.rc) + +-/bin/rm -f s/7.ss ++rm -f s/7.ss + sed -e "s/nCopyright 1984-..../nCopyright 1984-`date +%Y`/g" ../s/7.ss > s/7.ss + set updatedfiles = ($updatedfiles s/7.ss) + +-/bin/rm -f s/cmacros.ss ++rm -f s/cmacros.ss + set VNUM = `printf "%04x%02x%02x" $MR $mR $bR` + sed -e "s/scheme-version #x......../scheme-version #x$VNUM/" ../s/cmacros.ss > s/cmacros.ss + set updatedfiles = ($updatedfiles s/cmacros.ss) +@@ -146,17 +146,17 @@ sed -e "s/Revised\(.*\)for Chez Scheme Version [^ ]*<br>/Revised\1for Chez Schem + ../csug/csug.stex > csug/csug.stex + set updatedfiles = ($updatedfiles csug/copyright.stex csug/csug.stex) + +-/bin/rm bintar/Makefile ++rm -f bintar/Makefile + sed -e "s/^version = .*/version = $R/" \ + -e "s/csv[0-9][0-9][0-9]*/csv$ZR/g" \ + ../bintar/Makefile > bintar/Makefile + set updatedfiles = ($updatedfiles bintar/Makefile) + +-/bin/rm rpm/Makefile ++rm -f rpm/Makefile + sed -e "s/^version = .*/version = $R/" ../rpm/Makefile > rpm/Makefile + set updatedfiles = ($updatedfiles rpm/Makefile) + +-/bin/rm pkg/Makefile ++rm -f pkg/Makefile + sed -e "s/^version = .*/version = $R/" \ + -e "s/© .* Cisco Systems/\© `date +%Y` Cisco Systems/" \ + ../pkg/Makefile > pkg/Makefile +@@ -170,7 +170,7 @@ foreach fn (wininstall/{,t}{a6,i3}nt.wxs) + sed -e "s/csv[0-9][0-9][0-9]*/csv$ZR/" ../$fn > $fn + end + +-/bin/rm LOG ++rm -f LOG + cat ../LOG > LOG + echo "" >> LOG + echo "$R changes:" >> LOG +diff --git a/pkg/Makefile b/pkg/Makefile +index e0eef67..a3fe83f 100644 +--- a/pkg/Makefile ++++ b/pkg/Makefile +@@ -39,7 +39,7 @@ $(PKG): $(BUILDROOT)/$(PKG) + --package-path $(BUILDROOT)\ + $(PKG) + sudo chown $(DOTUSER):$(DOTGROUP) $(PKG) +- sudo /bin/rm -rf $(RELEASE) $(BUILDROOT) ++ sudo rm -rf $(RELEASE) $(BUILDROOT) + + $(BUILDROOT)/$(PKG): $(PKGCONTENT) + sudo /usr/bin/pkgbuild\ +diff --git a/release_notes/gifs/Makefile b/release_notes/gifs/Makefile +index 9572965..701d53a 100644 +--- a/release_notes/gifs/Makefile ++++ b/release_notes/gifs/Makefile +@@ -15,7 +15,7 @@ density=-r90x90 + ${density} - |\ + pnmcrop |\ + ppmtogif -transparent white > $*.gif +- /bin/rm -f $*.dvi $*.log *.aux ++ rm -f $*.dvi $*.log *.aux + test -f $*.gif && chmod 644 $*.gif + + all: ${gifs} +@@ -44,7 +44,7 @@ ghostRightarrow.gif: Rightarrow.tex + giftrans -g '#000000=#ffffff' |\ + giftopnm |\ + ppmtogif -transparent white > $*.gif +- /bin/rm -f Rightarrow.dvi Rightarrow.log Rightarrow.aux ++ rm -f Rightarrow.dvi Rightarrow.log Rightarrow.aux + test -f $*.gif && chmod 644 $*.gif + +-clean: ; /bin/rm -f *.gif Make.out ++clean: ; rm -f *.gif Make.out +diff --git a/release_notes/math/Makefile b/release_notes/math/Makefile +index b3ffae3..9eca430 100644 +--- a/release_notes/math/Makefile ++++ b/release_notes/math/Makefile +@@ -16,11 +16,11 @@ density=-r90x90 + ${density} - |\ + pnmcrop |\ + ppmtogif -transparent white > $*.gif +- /bin/rm -f $*.dvi $*.log $*.aux ++ rm -f $*.dvi $*.log $*.aux + test -f $*.gif && chmod 644 $*.gif + + all: ${gifs} + + ${gifs}: mathmacros + +-clean: ; /bin/rm -f *.gif Make.out ++clean: ; rm -f *.gif Make.out +diff --git a/s/Mf-base b/s/Mf-base +index c709608..40d816c 100644 +--- a/s/Mf-base ++++ b/s/Mf-base +@@ -206,7 +206,7 @@ profiled: + $(MAKE) all loadspd=t bp=t PetiteBoot=../boot/$m/xpetite.boot SchemeBoot=../boot/$m/xscheme.boot + $(MAKE) prettyclean + $(MAKE) io.$m loadspd=t dumpbpd=t Scheme="../bin/$m/scheme -b ../boot/$m/xpetite.boot -b ../boot/$m/xscheme.boot" +- /bin/rm -f ../boot/$m/xpetite.boot ../boot/$m/xscheme.boot ++ rm -f ../boot/$m/xpetite.boot ../boot/$m/xscheme.boot + $(MAKE) prettyclean + $(MAKE) all loadspd=t loadbpd=t + +diff --git a/workarea b/workarea +index bacc712..0461919 100755 +--- a/workarea ++++ b/workarea +@@ -70,9 +70,9 @@ esac + + if [ "$OS" = "Windows_NT" ] + then +- ln="/bin/cp -R" ++ ln="cp -R" + else +- ln="/bin/ln -s" ++ ln="ln -s" + fi + + # This shell script creates a workarea for local modifications to the +@@ -102,7 +102,7 @@ workln() + forceworkln() + { + if [ ! -e $2 ] ; then +- /bin/ln -s $1 $2 2> /dev/null ++ ln -s $1 $2 2> /dev/null + fi + } + +@@ -168,13 +168,13 @@ done + # deep copy submodules where builds occur so changes don't propagate through symlinks + for dir in `echo zlib` ; do + if [ ! -e $W/$dir ] ; then +- /bin/cp -R $dir $W/$dir ++ cp -R $dir $W/$dir + fi + done + + for dir in `echo lz4` ; do + if [ ! -e $W/$dir ] ; then +- /bin/cp -R $dir $W/$dir ++ cp -R $dir $W/$dir + fi + done + +-- +2.21.1 (Apple Git-122.3) + diff --git a/gnu/packages/patches/containerd-test-with-go1.13.patch b/gnu/packages/patches/containerd-test-with-go1.13.patch deleted file mode 100644 index 964adee9e6..0000000000 --- a/gnu/packages/patches/containerd-test-with-go1.13.patch +++ /dev/null @@ -1,21 +0,0 @@ -Compatibility fix for go 1.13, flag.Parse() shouldn't be called during -package initialization. -https://golang.org/doc/go1.13#testing ---- a/client_test.go 2020-02-12 14:50:28.991245371 -0500 -+++ b/client_test.go 2020-02-12 15:12:37.383523980 -0500 -@@ -49,7 +49,6 @@ - flag.StringVar(&address, "address", defaultAddress, "The address to the containerd socket for use in the tests") - flag.BoolVar(&noDaemon, "no-daemon", false, "Do not start a dedicated daemon for the tests") - flag.BoolVar(&noCriu, "no-criu", false, "Do not run the checkpoint tests") -- flag.Parse() - } - - func testContext() (context.Context, context.CancelFunc) { -@@ -59,6 +58,7 @@ - } - - func TestMain(m *testing.M) { -+ flag.Parse() - if testing.Short() { - os.Exit(m.Run()) - } diff --git a/gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch b/gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch new file mode 100644 index 0000000000..24be6e31d9 --- /dev/null +++ b/gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch @@ -0,0 +1,64 @@ +Make libcurl respect the SSL_CERT_{DIR,FILE} variables by default. The variables +are fetched during initialization to preserve thread-safety (curl_global_init(3) +must be called when no other threads exist). + +This fixes network functionality in rust:cargo, and probably removes the need +for other future workarounds. +=================================================================== +--- curl-7.66.0.orig/lib/easy.c 2020-01-02 15:43:11.883921171 +0100 ++++ curl-7.66.0/lib/easy.c 2020-01-02 16:18:54.691882797 +0100 +@@ -134,6 +134,9 @@ + # pragma warning(default:4232) /* MSVC extension, dllimport identity */ + #endif + ++char * Curl_ssl_cert_dir = NULL; ++char * Curl_ssl_cert_file = NULL; ++ + /** + * curl_global_init() globally initializes curl given a bitwise set of the + * different features of what to initialize. +@@ -155,6 +158,9 @@ + #endif + } + ++ Curl_ssl_cert_dir = curl_getenv("SSL_CERT_DIR"); ++ Curl_ssl_cert_file = curl_getenv("SSL_CERT_FILE"); ++ + if(!Curl_ssl_init()) { + DEBUGF(fprintf(stderr, "Error: Curl_ssl_init failed\n")); + return CURLE_FAILED_INIT; +@@ -260,6 +266,9 @@ + Curl_ssl_cleanup(); + Curl_resolver_global_cleanup(); + ++ free(Curl_ssl_cert_dir); ++ free(Curl_ssl_cert_file); ++ + #ifdef WIN32 + Curl_win32_cleanup(init_flags); + #endif +diff -ur curl-7.66.0.orig/lib/url.c curl-7.66.0/lib/url.c +--- curl-7.66.0.orig/lib/url.c 2020-01-02 15:43:11.883921171 +0100 ++++ curl-7.66.0/lib/url.c 2020-01-02 16:21:11.563880346 +0100 +@@ -524,6 +524,21 @@ + if(result) + return result; + #endif ++ extern char * Curl_ssl_cert_dir; ++ extern char * Curl_ssl_cert_file; ++ if(Curl_ssl_cert_dir) { ++ if(result = Curl_setstropt(&set->str[STRING_SSL_CAPATH], Curl_ssl_cert_dir)) ++ return result; ++ if(result = Curl_setstropt(&set->str[STRING_SSL_CAPATH_PROXY], Curl_ssl_cert_dir)) ++ return result; ++ } ++ ++ if(Curl_ssl_cert_file) { ++ if(result = Curl_setstropt(&set->str[STRING_SSL_CAFILE], Curl_ssl_cert_file)) ++ return result; ++ if(result = Curl_setstropt(&set->str[STRING_SSL_CAFILE_PROXY], Curl_ssl_cert_file)) ++ return result; ++ } + } + + set->wildcard_enabled = FALSE; diff --git a/gnu/packages/patches/gimp-make-gegl-introspect-optional.patch b/gnu/packages/patches/gimp-make-gegl-introspect-optional.patch new file mode 100644 index 0000000000..4dd1ab74a8 --- /dev/null +++ b/gnu/packages/patches/gimp-make-gegl-introspect-optional.patch @@ -0,0 +1,43 @@ +From 2cae9b9acf9da98c4c9990819ffbd5aabe23017e Mon Sep 17 00:00:00 2001 +From: Jehan <jehan@girinstud.io> +Date: Mon, 14 Dec 2020 19:53:38 +0100 +Subject: [PATCH] app: make "gegl:introspect" an optional operation dependency. + +Check at runtime for the operation availability and set the "Show Image +Graph" action active depending on this check. + +This goes with discussions to make this operation optional with a +runtime check for the tool `dot`. +See: https://gitlab.gnome.org/GNOME/gegl/-/merge_requests/84 +--- + app/actions/debug-actions.c | 6 ++++++ + app/sanity.c | 1 - + 2 files changed, 6 insertions(+), 1 deletion(-) + +diff --git a/app/actions/debug-actions.c b/app/actions/debug-actions.c +index 6be4422b228..22ca38b15ea 100644 +--- a/app/actions/debug-actions.c ++++ b/app/actions/debug-actions.c +@@ -103,4 +103,10 @@ void + debug_actions_update (GimpActionGroup *group, + gpointer data) + { ++#define SET_SENSITIVE(action,condition) \ ++ gimp_action_group_set_action_sensitive (group, action, (condition) != 0) ++ ++ SET_SENSITIVE ("debug-show-image-graph", gegl_has_operation ("gegl:introspect")); ++ ++#undef SET_SENSITIVE + } +diff --git a/app/sanity.c b/app/sanity.c +index 015801a396e..6374ac1ad20 100644 +--- a/app/sanity.c ++++ b/app/sanity.c +@@ -650,7 +650,6 @@ sanity_check_gegl_ops (void) + "gegl:hue-chroma", + "gegl:illusion", + "gegl:image-gradient", +- "gegl:introspect", + "gegl:invert-gamma", + "gegl:invert-linear", + "gegl:lens-blur", diff --git a/gnu/packages/patches/imagemagick-CVE-2020-27829.patch b/gnu/packages/patches/imagemagick-CVE-2020-27829.patch new file mode 100644 index 0000000000..b15c1d0879 --- /dev/null +++ b/gnu/packages/patches/imagemagick-CVE-2020-27829.patch @@ -0,0 +1,27 @@ +We omit the ChangeLog changes below, since they do not apply cleanly. + + +From 6ee5059cd3ac8d82714a1ab1321399b88539abf0 Mon Sep 17 00:00:00 2001 +From: Cristy <urban-warrior@imagemagick.org> +Date: Mon, 30 Nov 2020 16:26:59 +0000 +Subject: [PATCH] possible TIFF related-heap buffer overflow (alert & POC by + Hardik Shah) + +--- + ChangeLog | 6 ++++++ + coders/tiff.c | 2 +- + 2 files changed, 7 insertions(+), 1 deletion(-) + +diff --git a/coders/tiff.c b/coders/tiff.c +index e98f927ab..1eecf17ae 100644 +--- a/coders/tiff.c ++++ b/coders/tiff.c +@@ -1975,7 +1975,7 @@ static Image *ReadTIFFImage(const ImageInfo *image_info, + extent+=image->columns*sizeof(uint32); + #endif + strip_pixels=(unsigned char *) AcquireQuantumMemory(extent, +- sizeof(*strip_pixels)); ++ 2*sizeof(*strip_pixels)); + if (strip_pixels == (unsigned char *) NULL) + ThrowTIFFException(ResourceLimitError,"MemoryAllocationFailed"); + (void) memset(strip_pixels,0,extent*sizeof(*strip_pixels)); diff --git a/gnu/packages/patches/imagemagick-ReadDCMImage-fix.patch b/gnu/packages/patches/imagemagick-ReadDCMImage-fix.patch new file mode 100644 index 0000000000..42ece43682 --- /dev/null +++ b/gnu/packages/patches/imagemagick-ReadDCMImage-fix.patch @@ -0,0 +1,26 @@ +From 512668dfd92b20d0d08b91d62b422d8262573281 Mon Sep 17 00:00:00 2001 +From: Dirk Lemstra <dirk@lemstra.org> +Date: Wed, 24 Mar 2021 20:37:15 +0100 +Subject: [PATCH] Throw exception when no exception was raised but status was + false (#3432). + +--- + coders/dcm.c | 2 ++ + 1 file changed, 2 insertions(+) + +diff --git a/coders/dcm.c b/coders/dcm.c +index 7a68ed6e8..ed17c9567 100644 +--- a/coders/dcm.c ++++ b/coders/dcm.c +@@ -3989,6 +3989,8 @@ static Image *ReadDCMImage(const ImageInfo *image_info,ExceptionInfo *exception) + if (redmap != (int *) NULL) + redmap=(int *) RelinquishMagickMemory(redmap); + image=DestroyImageList(image); ++ if ((status == MagickFalse) && (exception->severity < ErrorException)) ++ ThrowReaderException(CorruptImageError,"CorruptImage"); + return(GetFirstImageInList(images)); + } + if (info.depth != (1UL*MAGICKCORE_QUANTUM_DEPTH)) +-- +2.31.0 + diff --git a/gnu/packages/patches/imagemagick-ReadDCMPixels-fix.patch b/gnu/packages/patches/imagemagick-ReadDCMPixels-fix.patch new file mode 100644 index 0000000000..a91999186b --- /dev/null +++ b/gnu/packages/patches/imagemagick-ReadDCMPixels-fix.patch @@ -0,0 +1,35 @@ +From c8f25953ad1dd38a8b2d92738f0f742ad7e0bce7 Mon Sep 17 00:00:00 2001 +From: Cristy <mikayla-grace@urban-warrior.org> +Date: Sun, 21 Mar 2021 21:21:15 -0400 +Subject: [PATCH] https://bugs.chromium.org/p/oss-fuzz/issues/detail?id=32322 + +--- + coders/dcm.c | 12 ++++++------ + 1 file changed, 6 insertions(+), 6 deletions(-) + +diff --git a/coders/dcm.c b/coders/dcm.c +index 29eed9618..7a68ed6e8 100644 +--- a/coders/dcm.c ++++ b/coders/dcm.c +@@ -2984,12 +2984,12 @@ static MagickBooleanType ReadDCMPixels(Image *image,DCMInfo *info, + } + else + { +- SetPixelRed(q,(Quantum) (((ssize_t) pixel.red) | +- (((ssize_t) GetPixelRed(q)) << 8))); +- SetPixelGreen(q,(Quantum) (((ssize_t) pixel.green) | +- (((ssize_t) GetPixelGreen(q)) << 8))); +- SetPixelBlue(q,(Quantum) (((ssize_t) pixel.blue) | +- (((ssize_t) GetPixelBlue(q)) << 8))); ++ SetPixelRed(q,(Quantum) (((size_t) pixel.red) | ++ (((size_t) GetPixelRed(q)) << 8))); ++ SetPixelGreen(q,(Quantum) (((size_t) pixel.green) | ++ (((size_t) GetPixelGreen(q)) << 8))); ++ SetPixelBlue(q,(Quantum) (((size_t) pixel.blue) | ++ (((size_t) GetPixelBlue(q)) << 8))); + } + q++; + } +-- +2.31.0 + diff --git a/gnu/packages/patches/imagemagick-WriteTHUMBNAILImage-fix.patch b/gnu/packages/patches/imagemagick-WriteTHUMBNAILImage-fix.patch new file mode 100644 index 0000000000..f38a45b800 --- /dev/null +++ b/gnu/packages/patches/imagemagick-WriteTHUMBNAILImage-fix.patch @@ -0,0 +1,25 @@ +From 6a5d3575487487f2703383338bd17c8c25068f19 Mon Sep 17 00:00:00 2001 +From: Cristy <mikayla-grace@urban-warrior.org> +Date: Thu, 25 Mar 2021 08:58:18 -0400 +Subject: [PATCH] eliminate compiler warning + +--- + coders/thumbnail.c | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/coders/thumbnail.c b/coders/thumbnail.c +index 3833341b0..1e2bfe8c2 100644 +--- a/coders/thumbnail.c ++++ b/coders/thumbnail.c +@@ -199,7 +199,7 @@ static MagickBooleanType WriteTHUMBNAILImage(const ImageInfo *image_info, + q++; + } + if ((q > (GetStringInfoDatum(profile)+GetStringInfoLength(profile))) || +- (length > (GetStringInfoDatum(profile)+GetStringInfoLength(profile)-q))) ++ ((ssize_t) length > (GetStringInfoDatum(profile)+GetStringInfoLength(profile)-q))) + ThrowWriterException(CoderError,"ImageDoesNotHaveAThumbnail"); + thumbnail_image=BlobToImage(image_info,q,length,&image->exception); + if (thumbnail_image == (Image *) NULL) +-- +2.31.0 + diff --git a/gnu/packages/patches/libvirt-add-install-prefix.patch b/gnu/packages/patches/libvirt-add-install-prefix.patch new file mode 100644 index 0000000000..1331fa9b6f --- /dev/null +++ b/gnu/packages/patches/libvirt-add-install-prefix.patch @@ -0,0 +1,329 @@ +Patch from NixOS: +https://raw.githubusercontent.com/NixOS/nixpkgs/b98031a49c66095dd1eb9185ecdaeeb5e3cd752d/pkgs/development/libraries/libvirt/0001-meson-patch-in-an-install-prefix-for-building-on-nix.patch + +From a896b0be849455edb83a9305dfec9b41447ef3e4 Mon Sep 17 00:00:00 2001 +From: Euan Kemp <euank@euank.com> +Date: Thu, 14 Jan 2021 00:32:00 -0800 +Subject: [PATCH] meson: patch in an install prefix for building on nix + +Used in the nixpkgs version of libvirt so that we can install things in +the nix store, but read them from the root filesystem. +--- + meson.build | 9 +++++++++ + meson_options.txt | 2 ++ + src/libxl/meson.build | 6 +++--- + src/locking/meson.build | 8 ++++---- + src/lxc/meson.build | 6 +++--- + src/meson.build | 18 +++++++++--------- + src/network/meson.build | 12 ++++++------ + src/nwfilter/xml/meson.build | 2 +- + src/qemu/meson.build | 14 +++++++------- + src/remote/meson.build | 6 +++--- + src/security/apparmor/meson.build | 8 ++++---- + tools/meson.build | 4 ++-- + 12 files changed, 53 insertions(+), 42 deletions(-) + +diff --git a/meson.build b/meson.build +index b5164f6..33719f1 100644 +--- a/meson.build ++++ b/meson.build +@@ -39,6 +39,8 @@ if host_machine.system() == 'windows' + conf.set('WINVER', '0x0600') # Win Vista / Server 2008 + endif + ++# patched in for nix ++install_prefix = get_option('install_prefix') + + # set various paths + +@@ -57,6 +59,13 @@ else + sysconfdir = prefix / get_option('sysconfdir') + endif + ++# nix: don't prefix the localstatedir; some things need to write to it, so it ++# can't be in the nix store, and that's what the prefix is. ++# We'll prefix things ourselves where needed ++localstatedir = get_option('localstatedir') ++# Same for sysconfidr ++sysconfdir = get_option('sysconfdir') ++ + # if --prefix is /usr, don't use /usr/var for localstatedir or /usr/etc for + # sysconfdir as this makes a lot of things break in testing situations + if prefix == '/usr' +diff --git a/meson_options.txt b/meson_options.txt +index e5d79c2..081cd32 100644 +--- a/meson_options.txt ++++ b/meson_options.txt +@@ -1,3 +1,5 @@ ++option('install_prefix', type: 'string', value: '', description: 'prefix for nix store installation') ++ + option('no_git', type: 'boolean', value: false, description: 'Disable git submodule update') + option('packager', type: 'string', value: '', description: 'Extra packager name') + option('packager_version', type: 'string', value: '', description: 'Extra packager version') +diff --git a/src/libxl/meson.build b/src/libxl/meson.build +index 3bb6cc5..78d7be0 100644 +--- a/src/libxl/meson.build ++++ b/src/libxl/meson.build +@@ -84,8 +84,8 @@ if conf.has('WITH_LIBXL') + } + + virt_install_dirs += [ +- localstatedir / 'lib' / 'libvirt' / 'libxl', +- runstatedir / 'libvirt' / 'libxl', +- localstatedir / 'log' / 'libvirt' / 'libxl', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'libxl', ++ install_prefix + runstatedir / 'libvirt' / 'libxl', ++ install_prefix + localstatedir / 'log' / 'libvirt' / 'libxl', + ] + endif +diff --git a/src/locking/meson.build b/src/locking/meson.build +index 8a28310..9da81cc 100644 +--- a/src/locking/meson.build ++++ b/src/locking/meson.build +@@ -243,14 +243,14 @@ if conf.has('WITH_LIBVIRTD') + } + + virt_install_dirs += [ +- localstatedir / 'lib' / 'libvirt' / 'lockd', +- localstatedir / 'lib' / 'libvirt' / 'lockd' / 'files', +- runstatedir / 'libvirt' / 'lockd', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'lockd', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'lockd' / 'files', ++ install_prefix + runstatedir / 'libvirt' / 'lockd', + ] + + if conf.has('WITH_SANLOCK') + virt_install_dirs += [ +- localstatedir / 'lib' / 'libvirt' / 'sanlock', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'sanlock', + ] + endif + endif +diff --git a/src/lxc/meson.build b/src/lxc/meson.build +index f8e2a88..96d6687 100644 +--- a/src/lxc/meson.build ++++ b/src/lxc/meson.build +@@ -182,8 +182,8 @@ if conf.has('WITH_LXC') + } + + virt_install_dirs += [ +- localstatedir / 'lib' / 'libvirt' / 'lxc', +- runstatedir / 'libvirt' / 'lxc', +- localstatedir / 'log' / 'libvirt' / 'lxc', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'lxc', ++ install_prefix + runstatedir / 'libvirt' / 'lxc', ++ install_prefix + localstatedir / 'log' / 'libvirt' / 'lxc', + ] + endif +diff --git a/src/meson.build b/src/meson.build +index 7c47821..d33d16a 100644 +--- a/src/meson.build ++++ b/src/meson.build +@@ -669,7 +669,7 @@ endforeach + + virt_conf_files += 'libvirt.conf' + +-install_data(virt_conf_files, install_dir: confdir) ++install_data(virt_conf_files, install_dir: install_prefix + confdir) + install_data(virt_aug_files, install_dir: virt_aug_dir) + + # augeas_test_data: +@@ -729,7 +729,7 @@ foreach data : virt_daemon_confs + output: '@0@.conf'.format(data['name']), + configuration: daemon_conf, + install: true, +- install_dir: confdir, ++ install_dir: install_prefix + confdir, + ) + + if data.get('with_ip', false) +@@ -853,14 +853,14 @@ if conf.has('WITH_LIBVIRTD') + + install_data( + init_file, +- install_dir: sysconfdir / 'init.d', ++ install_dir: install_prefix + sysconfdir / 'init.d', + rename: [ init['name'] ], + ) + + if init.has_key('confd') + install_data( + init['confd'], +- install_dir: sysconfdir / 'conf.d', ++ install_dir: install_prefix + sysconfdir / 'conf.d', + rename: [ init['name'] ], + ) + endif +@@ -872,7 +872,7 @@ if init_script != 'none' + foreach sysconf : sysconf_files + install_data( + sysconf['file'], +- install_dir: sysconfdir / 'sysconfig', ++ install_dir: install_prefix + sysconfdir / 'sysconfig', + rename: [ sysconf['name'] ], + ) + endforeach +@@ -897,10 +897,10 @@ endif + # Install empty directories + + virt_install_dirs += [ +- localstatedir / 'cache' / 'libvirt', +- localstatedir / 'lib' / 'libvirt' / 'images', +- localstatedir / 'lib' / 'libvirt' / 'filesystems', +- localstatedir / 'lib' / 'libvirt' / 'boot', ++ install_prefix + localstatedir / 'cache' / 'libvirt', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'images', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'filesystems', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'boot', + ] + + meson.add_install_script( +diff --git a/src/network/meson.build b/src/network/meson.build +index 3ec598c..b02040b 100644 +--- a/src/network/meson.build ++++ b/src/network/meson.build +@@ -79,9 +79,9 @@ if conf.has('WITH_NETWORK') + } + + virt_install_dirs += [ +- localstatedir / 'lib' / 'libvirt' / 'network', +- localstatedir / 'lib' / 'libvirt' / 'dnsmasq', +- runstatedir / 'libvirt' / 'network', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'network', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'dnsmasq', ++ install_prefix + runstatedir / 'libvirt' / 'network', + ] + + configure_file( +@@ -89,12 +89,12 @@ if conf.has('WITH_NETWORK') + output: '@BASENAME@', + copy: true, + install: true, +- install_dir: confdir / 'qemu' / 'networks', ++ install_dir: install_prefix + confdir / 'qemu' / 'networks', + ) + + meson.add_install_script( + meson_python_prog.path(), python3_prog.path(), meson_install_symlink_prog.path(), +- confdir / 'qemu' / 'networks' / 'autostart', ++ install_prefix + confdir / 'qemu' / 'networks' / 'autostart', + '../default.xml', 'default.xml', + ) + +diff --git a/src/nwfilter/xml/meson.build b/src/nwfilter/xml/meson.build +index 0d96c54..66c92a1 100644 +--- a/src/nwfilter/xml/meson.build ++++ b/src/nwfilter/xml/meson.build +@@ -25,4 +25,4 @@ nwfilter_xml_files = [ + 'qemu-announce-self.xml', + ] + +-install_data(nwfilter_xml_files, install_dir: sysconfdir / 'libvirt' / 'nwfilter') ++install_data(nwfilter_xml_files, install_dir: install_prefix + sysconfdir / 'libvirt' / 'nwfilter') +diff --git a/src/qemu/meson.build b/src/qemu/meson.build +index 90640b0..8802cec 100644 +--- a/src/qemu/meson.build ++++ b/src/qemu/meson.build +@@ -171,12 +171,12 @@ if conf.has('WITH_QEMU') + } + + virt_install_dirs += [ +- localstatedir / 'lib' / 'libvirt' / 'qemu', +- runstatedir / 'libvirt' / 'qemu', +- localstatedir / 'cache' / 'libvirt' / 'qemu', +- localstatedir / 'log' / 'libvirt' / 'qemu', +- localstatedir / 'lib' / 'libvirt' / 'swtpm', +- runstatedir / 'libvirt' / 'qemu' / 'swtpm', +- localstatedir / 'log' / 'swtpm' / 'libvirt' / 'qemu', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'qemu', ++ install_prefix + runstatedir / 'libvirt' / 'qemu', ++ install_prefix + localstatedir / 'cache' / 'libvirt' / 'qemu', ++ install_prefix + localstatedir / 'log' / 'libvirt' / 'qemu', ++ install_prefix + localstatedir / 'lib' / 'libvirt' / 'swtpm', ++ install_prefix + runstatedir / 'libvirt' / 'qemu' / 'swtpm', ++ install_prefix + localstatedir / 'log' / 'swtpm' / 'libvirt' / 'qemu', + ] + endif +diff --git a/src/remote/meson.build b/src/remote/meson.build +index 9ad2f6a..429a15b 100644 +--- a/src/remote/meson.build ++++ b/src/remote/meson.build +@@ -245,7 +245,7 @@ if conf.has('WITH_REMOTE') + } + + virt_install_dirs += [ +- localstatedir / 'log' / 'libvirt', ++ install_prefix + localstatedir / 'log' / 'libvirt', + ] + + logrotate_conf = configuration_data() +@@ -259,7 +259,7 @@ if conf.has('WITH_REMOTE') + ) + install_data( + log_file, +- install_dir: sysconfdir / 'logrotate.d', ++ install_dir: install_prefix + sysconfdir / 'logrotate.d', + rename: [ name ], + ) + endforeach +@@ -309,7 +309,7 @@ endif + if conf.has('WITH_SASL') + install_data( + 'libvirtd.sasl', +- install_dir: sysconfdir / 'sasl2', ++ install_dir: install_prefix + sysconfdir / 'sasl2', + rename: [ 'libvirt.conf' ], + ) + endif +diff --git a/src/security/apparmor/meson.build b/src/security/apparmor/meson.build +index af43780..e2d6c81 100644 +--- a/src/security/apparmor/meson.build ++++ b/src/security/apparmor/meson.build +@@ -17,22 +17,22 @@ foreach name : apparmor_gen_profiles + output: name, + configuration: apparmor_gen_profiles_conf, + install: true, +- install_dir: apparmor_dir, ++ install_dir: install_prefix + apparmor_dir, + ) + endforeach + + install_data( + [ 'libvirt-qemu', 'libvirt-lxc' ], +- install_dir: apparmor_dir / 'abstractions', ++ install_dir: install_prefix + apparmor_dir / 'abstractions', + ) + + install_data( + [ 'TEMPLATE.qemu', 'TEMPLATE.lxc' ], +- install_dir: apparmor_dir / 'libvirt', ++ install_dir: install_prefix + apparmor_dir / 'libvirt', + ) + + install_data( + 'usr.lib.libvirt.virt-aa-helper.local', +- install_dir: apparmor_dir / 'local', ++ install_dir: install_prefix + apparmor_dir / 'local', + rename: 'usr.lib.libvirt.virt-aa-helper', + ) +diff --git a/tools/meson.build b/tools/meson.build +index b8c6802..dacd0ff 100644 +--- a/tools/meson.build ++++ b/tools/meson.build +@@ -115,7 +115,7 @@ if conf.has('WITH_LOGIN_SHELL') + install_rpath: libvirt_rpath, + ) + +- install_data('virt-login-shell.conf', install_dir: sysconfdir / 'libvirt') ++ install_data('virt-login-shell.conf', install_dir: install_prefix + sysconfdir / 'libvirt') + endif + + if host_machine.system() == 'windows' +@@ -274,7 +274,7 @@ configure_file( + if init_script == 'systemd' + install_data( + 'libvirt-guests.sysconf', +- install_dir: sysconfdir / 'sysconfig', ++ install_dir: install_prefix + sysconfdir / 'sysconfig', + rename: 'libvirt-guests', + ) diff --git a/gnu/packages/patches/linphone-desktop-without-sdk.patch b/gnu/packages/patches/linphone-desktop-without-sdk.patch new file mode 100644 index 0000000000..63e9808bf4 --- /dev/null +++ b/gnu/packages/patches/linphone-desktop-without-sdk.patch @@ -0,0 +1,235 @@ +From cfdf6d1c2051d6a20d0cbb94d81fe398f70dea4d Mon Sep 17 00:00:00 2001 +From: Raghav Gururajan <rg@raghavgururajan.name> +Date: Sun, 21 Mar 2021 21:13:53 -0400 +Subject: [PATCH] [PATCH]: Fix building from git. + +--- + CMakeLists.txt | 73 +------------------ + linphone-app/CMakeLists.txt | 12 +-- + .../cmake_builder/additional_steps.cmake | 2 +- + .../linphone_package/CMakeLists.txt | 38 ---------- + linphone-app/linphoneqt_version.cmake | 1 + + linphone-app/src/config.h.cmake | 1 + + 6 files changed, 6 insertions(+), 121 deletions(-) + create mode 100644 linphone-app/linphoneqt_version.cmake + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index f7eb05f2..3e853bdd 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -48,16 +48,6 @@ project(linphoneqt) + include(GNUInstallDirs) + include(CheckCXXCompilerFlag) + +-# Prepare gobal CMAKE configuration specific to the current project +-set(SDK_BUILD_DIR "${CMAKE_BINARY_DIR}/WORK") # SDK build in WORK. Keep all in it. +-set(LINPHONE_OUTPUT_DIR "${CMAKE_BINARY_DIR}/linphone-sdk/desktop") +- +-set(APPLICATION_OUTPUT_DIR "${CMAKE_BINARY_DIR}/OUTPUT") +- +-set(CMAKE_PREFIX_PATH "${LINPHONE_OUTPUT_DIR};${APPLICATION_OUTPUT_DIR}${PREFIX_PATH}") +-string(REPLACE ";" "|" PREFIX_PATH "${CMAKE_PREFIX_PATH}") +-#set(PREFIX_PATH "${LINPHONE_OUTPUT_DIR}|${APPLICATION_OUTPUT_DIR}${PREFIX_PATH}") +- + # Avoid cmake warning if CMP0071 is not set. + if (POLICY CMP0071) + cmake_policy(SET CMP0071 NEW) +@@ -116,9 +106,6 @@ if(ENABLE_V4L) + endif() + list(APPEND APP_OPTIONS "-DENABLE_RELATIVE_PREFIX=${ENABLE_RELATIVE_PREFIX}") + +-list(APPEND APP_OPTIONS "-DLINPHONE_OUTPUT_DIR=${LINPHONE_OUTPUT_DIR}") +- +-include(ExternalProject) + set(PROJECT_BUILD_COMMAND "") + if(CMAKE_BUILD_PARALLEL_LEVEL) + list(APPEND APP_OPTIONS "-DCMAKE_BUILD_PARALLEL_LEVEL=${CMAKE_BUILD_PARALLEL_LEVEL}") +@@ -133,32 +120,10 @@ if(CMAKE_VERBOSE_MAKEFILE) + endif() + endif() + if(UNIX AND NOT APPLE) +- set(CMAKE_INSTALL_RPATH "$ORIGIN:$ORIGIN/lib64:$ORIGIN/../lib64:$ORIGIN/lib:$ORIGIN/../lib:${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_LIBDIR}") + list(APPEND APP_OPTIONS "-DCMAKE_INSTALL_RPATH=${CMAKE_INSTALL_RPATH}") + endif() +-ExternalProject_Add(sdk PREFIX "${CMAKE_BINARY_DIR}/sdk" +- SOURCE_DIR "${CMAKE_SOURCE_DIR}/linphone-sdk" +- INSTALL_DIR "${LINPHONE_OUTPUT_DIR}" +- STAMP_DIR "${SDK_BUILD_DIR}/stamp" +- BINARY_DIR "${SDK_BUILD_DIR}" +- STEP_TARGETS build +- BUILD_COMMAND ${CMAKE_COMMAND} --build <BINARY_DIR> --config $<CONFIG> ${PROJECT_BUILD_COMMAND} +- INSTALL_COMMAND ${CMAKE_COMMAND} -E echo "Install step is already done at build time." +- LIST_SEPARATOR | # Use the alternate list separator +- CMAKE_ARGS ${APP_OPTIONS} ${USER_ARGS} -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL_DIR> -DCMAKE_PREFIX_PATH=${PREFIX_PATH} +- #BUILD_ALWAYS NO #${DO_BUILD} +-) +-ExternalProject_Add_Step(sdk force_build +- COMMENT "Forcing build for 'desktop'" +- DEPENDEES configure +- DEPENDERS build +- ALWAYS 1 +-) + include(FindPkgConfig) + +-set(APP_DEPENDS sdk) +- +- + find_package(Qt5 5.12 COMPONENTS Core REQUIRED) + + if ( NOT Qt5_FOUND ) +@@ -173,39 +138,5 @@ find_package(Mediastreamer2 CONFIG QUIET) + find_package(ortp CONFIG QUIET) + + +-if(NOT (LinphoneCxx_FOUND) OR NOT (Linphone_FOUND) OR NOT (bctoolbox_FOUND) OR NOT (belcard_FOUND) OR NOT (Mediastreamer2_FOUND) OR NOT (ortp_FOUND) OR FORCE_APP_EXTERNAL_PROJECTS) +- message("Projects are set as External projects. You can start building them by using for example : cmake --build . --target install") +- ExternalProject_Add(linphone-qt PREFIX "${CMAKE_BINARY_DIR}/linphone-app" +- SOURCE_DIR "${CMAKE_SOURCE_DIR}/linphone-app" +- INSTALL_DIR "${APPLICATION_OUTPUT_DIR}" +- BINARY_DIR "${CMAKE_BINARY_DIR}/linphone-app" +- DEPENDS ${APP_DEPENDS} +- BUILD_COMMAND ${CMAKE_COMMAND} --build <BINARY_DIR> --config $<CONFIG> ${PROJECT_BUILD_COMMAND} +- INSTALL_COMMAND ${CMAKE_COMMAND} -E echo "Install step will not be done by external project" +- LIST_SEPARATOR | # Use the alternate list separator +- CMAKE_ARGS ${APP_OPTIONS} ${USER_ARGS} -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL_DIR> -DCMAKE_PREFIX_PATH=${PREFIX_PATH} +- # ${APP_OPTIONS} +- BUILD_ALWAYS ON +- ) +- install(CODE "message(STATUS Running install)") +- set(AUTO_REGENERATION auto_regeneration) +- add_custom_target(${AUTO_REGENERATION} ALL +- COMMAND ${CMAKE_COMMAND} ${CMAKE_CURRENT_SOURCE_DIR} +- DEPENDS linphone-qt) +-else() +- message("Adding Linphone Desktop in an IDE-friendly state") +- set(CMAKE_INSTALL_PREFIX "${APPLICATION_OUTPUT_DIR}") +- add_subdirectory(${CMAKE_SOURCE_DIR}/linphone-app) +- add_dependencies(app-library ${APP_DEPENDS}) +-endif() +-ExternalProject_Add(linphone-qt-only PREFIX "${CMAKE_BINARY_DIR}/linphone-app" +- SOURCE_DIR "${CMAKE_SOURCE_DIR}/linphone-app" +- INSTALL_DIR "${APPLICATION_OUTPUT_DIR}" +- BINARY_DIR "${CMAKE_BINARY_DIR}/linphone-app" +- BUILD_COMMAND ${CMAKE_COMMAND} --build <BINARY_DIR> --config $<CONFIG> ${PROJECT_BUILD_COMMAND} +-# INSTALL_COMMAND ${CMAKE_COMMAND} -E echo "Install step is already done at build time." +- LIST_SEPARATOR | # Use the alternate list separator +- CMAKE_ARGS ${APP_OPTIONS} ${USER_ARGS} -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL_DIR> -DCMAKE_PREFIX_PATH=${PREFIX_PATH} +- EXCLUDE_FROM_ALL ON +- BUILD_ALWAYS ON +-) ++message("Adding Linphone Desktop in an IDE-friendly state") ++add_subdirectory(${CMAKE_SOURCE_DIR}/linphone-app) +diff --git a/linphone-app/CMakeLists.txt b/linphone-app/CMakeLists.txt +index 3bc9420a..5267cd4a 100644 +--- a/linphone-app/CMakeLists.txt ++++ b/linphone-app/CMakeLists.txt +@@ -21,17 +21,8 @@ + ################################################################################ + cmake_minimum_required(VERSION 3.1) + ++include(linphoneqt_version.cmake) + find_package(bctoolbox CONFIG) +-set(FULL_VERSION ) +-bc_compute_full_version(FULL_VERSION) +-set(version_major ) +-set(version_minor ) +-set(version_patch ) +-set(identifiers ) +-set(metadata ) +-bc_parse_full_version("${FULL_VERSION}" version_major version_minor version_patch identifiers metadata) +- +-project(linphoneqt VERSION "${version_major}.${version_minor}.${version_patch}") + + if(ENABLE_BUILD_VERBOSE) + #message("CMAKE_PREFIX_PATH ${CMAKE_PREFIX_PATH}") +@@ -49,7 +40,6 @@ if(UNIX AND NOT APPLE) + set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE) + endif() + list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/../cmake") +-list(APPEND CMAKE_MODULE_PATH "${LINPHONE_OUTPUT_DIR}/cmake") + + set(APP_LIBRARY app-library) + include(application_info.cmake) +diff --git a/linphone-app/cmake_builder/additional_steps.cmake b/linphone-app/cmake_builder/additional_steps.cmake +index 7f7fd573..48e3c716 100644 +--- a/linphone-app/cmake_builder/additional_steps.cmake ++++ b/linphone-app/cmake_builder/additional_steps.cmake +@@ -61,7 +61,7 @@ if (ENABLE_PACKAGING) + SOURCE_DIR "${CMAKE_CURRENT_LIST_DIR}/linphone_package" + DOWNLOAD_COMMAND "" + CMAKE_GENERATOR ${CMAKE_GENERATOR} +- CMAKE_ARGS ${LINPHONE_BUILDER_EP_ARGS} -DCMAKE_INSTALL_PREFIX=${LINPHONE_BUILDER_WORK_DIR}/PACKAGE -DTOOLS_DIR=${CMAKE_BINARY_DIR}/programs -DLINPHONE_OUTPUT_DIR=${CMAKE_INSTALL_PREFIX} -DLINPHONE_DESKTOP_DIR=${CMAKE_CURRENT_LIST_DIR}/.. -DLINPHONE_SOURCE_DIR=${EP_linphone_SOURCE_DIR} ${ENABLE_VARIABLES} -DLINPHONE_BUILDER_SIGNING_IDENTITY=${LINPHONE_BUILDER_SIGNING_IDENTITY} ++ CMAKE_ARGS ${LINPHONE_BUILDER_EP_ARGS} -DCMAKE_INSTALL_PREFIX=${LINPHONE_BUILDER_WORK_DIR}/PACKAGE -DTOOLS_DIR=${CMAKE_BINARY_DIR}/programs -DLINPHONE_DESKTOP_DIR=${CMAKE_CURRENT_LIST_DIR}/.. -DLINPHONE_SOURCE_DIR=${EP_linphone_SOURCE_DIR} ${ENABLE_VARIABLES} -DLINPHONE_BUILDER_SIGNING_IDENTITY=${LINPHONE_BUILDER_SIGNING_IDENTITY} + ) + endif () + endif () +diff --git a/linphone-app/cmake_builder/linphone_package/CMakeLists.txt b/linphone-app/cmake_builder/linphone_package/CMakeLists.txt +index baea03cf..d06dcb74 100644 +--- a/linphone-app/cmake_builder/linphone_package/CMakeLists.txt ++++ b/linphone-app/cmake_builder/linphone_package/CMakeLists.txt +@@ -200,44 +200,6 @@ elseif (APPLE) + endif () + # install(DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/${APPLICATION_NAME}.app" DESTINATION "." USE_SOURCE_PERMISSIONS) + else()# Not Windows and Apple +- foreach (LIBRARY ${SHARED_LIBRARIES}) +- get_filename_component(LIBRARY_FILENAME ${LIBRARY} NAME) +- message("Changing RPATH of ${LIBRARY_FILENAME} from '${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_LIBDIR}' to '$ORIGIN/../${CMAKE_INSTALL_LIBDIR}'") +- execute_process(COMMAND install_name_tool -rpath "${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_LIBDIR}" "$ORIGIN/../lib" "${LIBRARY}") +- execute_process(COMMAND install_name_tool -addrpath "$ORIGIN/../lib64" "${LIBRARY}") +- endforeach () +- install(DIRECTORY "${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_BINDIR}/" DESTINATION "${CMAKE_INSTALL_BINDIR}" USE_SOURCE_PERMISSIONS) +-#Just in case. This is useless because we have to use CMAKE_INSTALL_LIBDIR +- if( EXISTS "${LINPHONE_OUTPUT_DIR}/lib/") +- file(GLOB SHARED_LIBRARIES "${LINPHONE_OUTPUT_DIR}/lib/*.so*") +- if( ENABLE_OPENH264 )# Remove openH264 lib from the installation. this codec will be download by user +- foreach(item ${SHARED_LIBRARIES}) +- get_filename_component(LIBRARY_FILENAME ${item} NAME) +- if("${LIBRARY_FILENAME}" MATCHES "^libopenh264.*$") +- list(REMOVE_ITEM SHARED_LIBRARIES ${item}) +- endif() +- endforeach(item) +- endif() +- install(FILES ${SHARED_LIBRARIES} DESTINATION "lib") +- endif() +- if( EXISTS "${LINPHONE_OUTPUT_DIR}/lib64/") +- file(GLOB SHARED_LIBRARIES "${LINPHONE_OUTPUT_DIR}/lib64/*.so*") +- if( ENABLE_OPENH264 )# Remove openH264 lib from the installation. this codec will be download by user +- foreach(item ${SHARED_LIBRARIES}) +- get_filename_component(LIBRARY_FILENAME ${item} NAME) +- if("${LIBRARY_FILENAME}" MATCHES "^libopenh264.*$") +- list(REMOVE_ITEM SHARED_LIBRARIES ${item}) +- endif() +- endforeach(item) +- endif() +- install(FILES ${SHARED_LIBRARIES} DESTINATION "lib64") +- endif() +- install(DIRECTORY "${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_DATAROOTDIR}/" DESTINATION "${CMAKE_INSTALL_DATAROOTDIR}" USE_SOURCE_PERMISSIONS) +- if(ENABLE_BUILD_VERBOSE) +- message("INSTALLATION : ${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_DATAROOTDIR}/" ) +- endif() +- file(GLOB PLUGINS_FILES "${LINPHONE_OUTPUT_DIR}/${CMAKE_INSTALL_LIBDIR}/mediastreamer/plugins/*") +- install(FILES ${PLUGINS_FILES} DESTINATION "plugins/mediastreamer/" ) + # Install desktop/icon files. + configure_file("${CMAKE_CURRENT_SOURCE_DIR}/../../assets/linphone.desktop.cmake" "${CMAKE_CURRENT_BINARY_DIR}/../../${EXECUTABLE_NAME}.desktop" @ONLY) + install(FILES "${CMAKE_CURRENT_BINARY_DIR}/../../${EXECUTABLE_NAME}.desktop" DESTINATION "${CMAKE_INSTALL_DATADIR}/applications") +diff --git a/linphone-app/linphoneqt_version.cmake b/linphone-app/linphoneqt_version.cmake +new file mode 100644 +index 00000000..a85d3455 +--- /dev/null ++++ b/linphone-app/linphoneqt_version.cmake +@@ -0,0 +1 @@ ++project(linphoneqt VERSION ${GUIX-SET-VERSION}) +\ No newline at end of file +diff --git a/linphone-app/src/config.h.cmake b/linphone-app/src/config.h.cmake +index 093539e0..5a238c70 100644 +--- a/linphone-app/src/config.h.cmake ++++ b/linphone-app/src/config.h.cmake +@@ -28,3 +28,4 @@ + #cmakedefine ENABLE_UPDATE_CHECK 1 + #cmakedefine EXECUTABLE_NAME "${EXECUTABLE_NAME}" + #cmakedefine MSPLUGINS_DIR "${MSPLUGINS_DIR}" ++#define LINPHONE_QT_GIT_VERSION "${PROJECT_VERSION}" +\ No newline at end of file +-- +2.31.0 + diff --git a/gnu/packages/patches/linphoneqt-tabbutton.patch b/gnu/packages/patches/linphoneqt-tabbutton.patch deleted file mode 100644 index 6b3214026e..0000000000 --- a/gnu/packages/patches/linphoneqt-tabbutton.patch +++ /dev/null @@ -1,96 +0,0 @@ -From ecaab0f73d0b74bbfbf150286305fa6e12970037 Mon Sep 17 00:00:00 2001 -From: Ronan Abhamon <ronan.abhamon@belledonne-communications.com> -Date: Fri, 19 Jan 2018 14:42:01 +0100 -Subject: [PATCH] fix(SettingsWindow): rename icon property of TabButton to - iconName (issue with Qt 5.10 and new icon property) - ---- - ui/modules/Common/Form/Tab/TabButton.qml | 8 ++++---- - ui/views/App/Settings/SettingsWindow.qml | 14 +++++++------- - 2 files changed, 11 insertions(+), 11 deletions(-) - -diff --git a/ui/modules/Common/Form/Tab/TabButton.qml b/ui/modules/Common/Form/Tab/TabButton.qml -index ad220ab2..a47bb20b 100644 ---- a/ui/modules/Common/Form/Tab/TabButton.qml -+++ b/ui/modules/Common/Form/Tab/TabButton.qml -@@ -12,8 +12,8 @@ Controls.TabButton { - - // --------------------------------------------------------------------------- - -- property string icon - property int iconSize: TabButtonStyle.icon.size -+ property string iconName - - readonly property bool _isSelected: parent.parent.currentItem === button - -@@ -66,9 +66,9 @@ Controls.TabButton { - Layout.leftMargin: TabButtonStyle.text.leftPadding - - icon: { -- var icon = button.icon -- return icon.length -- ? (icon + '_' + (button._isSelected ? 'selected' : 'normal')) -+ var iconName = button.iconName -+ return iconName.length -+ ? (iconName + '_' + (button._isSelected ? 'selected' : 'normal')) - : '' - } - iconSize: button.iconSize -diff --git a/ui/views/App/Settings/SettingsWindow.qml b/ui/views/App/Settings/SettingsWindow.qml -index b8f5a80f..58909544 100644 ---- a/ui/views/App/Settings/SettingsWindow.qml -+++ b/ui/views/App/Settings/SettingsWindow.qml -@@ -48,43 +48,43 @@ ApplicationWindow { - id: tabBar - - TabButton { -- icon: 'settings_sip_accounts' -+ iconName: 'settings_sip_accounts' - text: qsTr('sipAccountsTab') - width: implicitWidth - } - - TabButton { -- icon: 'settings_audio' -+ iconName: 'settings_audio' - text: qsTr('audioTab') - width: implicitWidth - } - - TabButton { -- icon: 'settings_video' -+ iconName: 'settings_video' - text: qsTr('videoTab') - width: implicitWidth - } - - TabButton { -- icon: 'settings_call' -+ iconName: 'settings_call' - text: qsTr('callsAndChatTab') - width: implicitWidth - } - - TabButton { -- icon: 'settings_network' -+ iconName: 'settings_network' - text: qsTr('networkTab') - width: implicitWidth - } - - TabButton { -- icon: 'settings_advanced' -+ iconName: 'settings_advanced' - text: qsTr('uiTab') - width: implicitWidth - } - - TabButton { -- icon: 'settings_advanced' -+ iconName: 'settings_advanced' - text: qsTr('uiAdvanced') - width: implicitWidth - } --- -2.21.0 - diff --git a/gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch b/gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch new file mode 100644 index 0000000000..1ebe6c803d --- /dev/null +++ b/gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch @@ -0,0 +1,32 @@ +From 378560050a8f93786c590cc99a55461666205b61 Mon Sep 17 00:00:00 2001 +From: Xin Long <lucien.xin@gmail.com> +Date: Fri, 24 Aug 2018 01:13:32 +0800 +Subject: [PATCH] build: fix netinet/sctp.h not to be installed + +After libcnetinet_HEADERS was set to sctp.h.in, netinet/sctp.h can +no longer be installed into ${includedir}. + +Since "AC_CONFIG_HEADERS([src/include/netinet/sctp.h])" is already +added into configure.ac, there's no need to generate sctp.h by +automake. + +So we simply set libcnetinet_HEADERS back to sctp.h. + +Fixes: 9607dd85e70a ("netinet/sctp.h: dynamically build based on system setup") +Signed-off-by: Xin Long <lucien.xin@gmail.com> +Signed-off-by: Marcelo Ricardo Leitner <marcelo.leitner@gmail.com> +--- + src/include/netinet/Makefile.am | 3 +-- + 1 file changed, 1 insertion(+), 2 deletions(-) + +diff --git a/src/include/netinet/Makefile.am b/src/include/netinet/Makefile.am +index ca0aac2..965db8c 100644 +--- a/src/include/netinet/Makefile.am ++++ b/src/include/netinet/Makefile.am +@@ -11,5 +11,4 @@ libcnetinetdir = $(includedir)/netinet + # API. + include_HEADERS = + +-libcnetinet_HEADERS = sctp.h.in +-BUILT_SOURCES = sctp.h ++libcnetinet_HEADERS = sctp.h diff --git a/gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch b/gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch new file mode 100644 index 0000000000..215c920e53 --- /dev/null +++ b/gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch @@ -0,0 +1,100 @@ +This patch comes from upstream. It corresponds to a patch applied to +the generated C source code for llhttp included in Node.js 14.16.0 +(see commit 641f786bb1a1f6eb1ff8750782ed939780f2b31a). That commit +fixes CVE-2020-8287. With this patch, the output of our +llhttp-bootstrap package matches the files included in Node.js 14.16.0 +exactly. + +commit e9b36ea64709c35ca66094d5cf3787f444029601 +Author: Fedor Indutny <fedor@indutny.com> +Date: Sat Oct 10 19:56:01 2020 -0700 + + http: unset `F_CHUNKED` on new `Transfer-Encoding` + + Duplicate `Transfer-Encoding` header should be a treated as a single, + but with original header values concatenated with a comma separator. In + the light of this, even if the past `Transfer-Encoding` ended with + `chunked`, we should be not let the `F_CHUNKED` to leak into the next + header, because mere presence of another header indicates that `chunked` + is not the last transfer-encoding token. + +diff --git a/src/llhttp/http.ts b/src/llhttp/http.ts +index f4f1a6e..0a0c365 100644 +--- a/src/llhttp/http.ts ++++ b/src/llhttp/http.ts +@@ -460,11 +460,19 @@ export class HTTP { + .match([ ' ', '\t' ], n('header_value_discard_ws')) + .otherwise(checkContentLengthEmptiness); + ++ // Multiple `Transfer-Encoding` headers should be treated as one, but with ++ // values separate by a comma. ++ // ++ // See: https://tools.ietf.org/html/rfc7230#section-3.2.2 ++ const toTransferEncoding = this.unsetFlag( ++ FLAGS.CHUNKED, ++ 'header_value_te_chunked'); ++ + n('header_value_start') + .otherwise(this.load('header_state', { + [HEADER_STATE.UPGRADE]: this.setFlag(FLAGS.UPGRADE, fallback), + [HEADER_STATE.TRANSFER_ENCODING]: this.setFlag( +- FLAGS.TRANSFER_ENCODING, 'header_value_te_chunked'), ++ FLAGS.TRANSFER_ENCODING, toTransferEncoding), + [HEADER_STATE.CONTENT_LENGTH]: n('header_value_content_length_once'), + [HEADER_STATE.CONNECTION]: n('header_value_connection'), + }, 'header_value')); +@@ -847,6 +855,11 @@ export class HTTP { + return span.start(span.end(this.node(next))); + } + ++ private unsetFlag(flag: FLAGS, next: string | Node): Node { ++ const p = this.llparse; ++ return p.invoke(p.code.and('flags', ~flag), this.node(next)); ++ } ++ + private setFlag(flag: FLAGS, next: string | Node): Node { + const p = this.llparse; + return p.invoke(p.code.or('flags', flag), this.node(next)); +diff --git a/test/request/transfer-encoding.md b/test/request/transfer-encoding.md +index a7d1681..b0891d6 100644 +--- a/test/request/transfer-encoding.md ++++ b/test/request/transfer-encoding.md +@@ -353,6 +353,38 @@ off=106 headers complete method=3 v=1/1 flags=200 content_length=0 + off=106 error code=15 reason="Request has invalid `Transfer-Encoding`" + ``` + ++## POST with `chunked` and duplicate transfer-encoding ++ ++<!-- meta={"type": "request", "noScan": true} --> ++```http ++POST /post_identity_body_world?q=search#hey HTTP/1.1 ++Accept: */* ++Transfer-Encoding: chunked ++Transfer-Encoding: deflate ++ ++World ++``` ++ ++```log ++off=0 message begin ++off=5 len=38 span[url]="/post_identity_body_world?q=search#hey" ++off=44 url complete ++off=54 len=6 span[header_field]="Accept" ++off=61 header_field complete ++off=62 len=3 span[header_value]="*/*" ++off=67 header_value complete ++off=67 len=17 span[header_field]="Transfer-Encoding" ++off=85 header_field complete ++off=86 len=7 span[header_value]="chunked" ++off=95 header_value complete ++off=95 len=17 span[header_field]="Transfer-Encoding" ++off=113 header_field complete ++off=114 len=7 span[header_value]="deflate" ++off=123 header_value complete ++off=125 headers complete method=3 v=1/1 flags=200 content_length=0 ++off=125 error code=15 reason="Request has invalid `Transfer-Encoding`" ++``` ++ + ## POST with `chunked` before other transfer-coding (lenient) + + TODO(indutny): should we allow it even in lenient mode? (Consider disabling diff --git a/gnu/packages/patches/mariadb-CVE-2021-27928.patch b/gnu/packages/patches/mariadb-CVE-2021-27928.patch new file mode 100644 index 0000000000..39a023c159 --- /dev/null +++ b/gnu/packages/patches/mariadb-CVE-2021-27928.patch @@ -0,0 +1,642 @@ +From 7580701e6279900fec40822952a3b874732289cf Mon Sep 17 00:00:00 2001 +From: Sergei Golubchik <serg@mariadb.org> +Date: Thu, 18 Feb 2021 14:20:48 +0100 +Subject: [PATCH] make @@wsrep_provider and @@wsrep_notify_cmd read-only + +this should simplify run-time cluster management +--- + mysql-test/suite/galera/disabled.def | 2 + + .../galera/include/galera_load_provider.inc | 19 -------- + .../galera/include/galera_unload_provider.inc | 3 +- + .../suite/galera/r/galera_ist_rsync.result | 2 +- + .../galera/r/galera_sst_mysqldump.result | 2 +- + .../suite/galera/r/mysql-wsrep#33.result | 2 +- + .../suite/sys_vars/r/sysvars_wsrep.result | 4 +- + .../sys_vars/r/wsrep_notify_cmd_basic.result | 47 ------------------- + .../sys_vars/r/wsrep_provider_basic.result | 40 ---------------- + .../r/wsrep_provider_options_basic.result | 46 ------------------ + .../sys_vars/t/wsrep_notify_cmd_basic.test | 43 ----------------- + .../sys_vars/t/wsrep_provider_basic.test | 39 --------------- + .../t/wsrep_provider_options_basic.test | 41 ---------------- + mysql-test/suite/wsrep/disabled.def | 2 + + mysql-test/suite/wsrep/r/variables.result | 12 ++--- + mysql-test/suite/wsrep/t/variables.test | 32 +++---------- + sql/sys_vars.cc | 8 ++-- + 17 files changed, 25 insertions(+), 319 deletions(-) + delete mode 100644 mysql-test/suite/sys_vars/r/wsrep_notify_cmd_basic.result + delete mode 100644 mysql-test/suite/sys_vars/r/wsrep_provider_basic.result + delete mode 100644 mysql-test/suite/sys_vars/r/wsrep_provider_options_basic.result + delete mode 100644 mysql-test/suite/sys_vars/t/wsrep_notify_cmd_basic.test + delete mode 100644 mysql-test/suite/sys_vars/t/wsrep_provider_basic.test + delete mode 100644 mysql-test/suite/sys_vars/t/wsrep_provider_options_basic.test + +diff --git a/mysql-test/suite/galera/disabled.def b/mysql-test/suite/galera/disabled.def +index d940c702d54..83f26e81636 100644 +--- a/mysql-test/suite/galera/disabled.def ++++ b/mysql-test/suite/galera/disabled.def +@@ -49,3 +49,5 @@ partition : MDEV-19958 Galera test failure on galera.partition + query_cache: MDEV-15805 Test failure on galera.query_cache + sql_log_bin : MDEV-21491 galera.sql_log_bin + versioning_trx_id : MDEV-18590 galera.versioning_trx_id ++galera_wsrep_provider_unset_set: wsrep_provider is read-only for security reasons ++pxc-421: wsrep_provider is read-only for security reasons +diff --git a/mysql-test/suite/galera/include/galera_load_provider.inc b/mysql-test/suite/galera/include/galera_load_provider.inc +index 0f843597d9c..28010cc5b71 100644 +--- a/mysql-test/suite/galera/include/galera_load_provider.inc ++++ b/mysql-test/suite/galera/include/galera_load_provider.inc +@@ -1,25 +1,6 @@ + --echo Loading wsrep provider ... + + --disable_query_log +---eval SET GLOBAL wsrep_provider = '$wsrep_provider_orig'; +- +-# +-# count occurences of successful node starts in error log +-# +-perl; +- use strict; +- my $test_log=$ENV{'LOG_FILE'} or die "LOG_FILE not set"; +- my $test_log_copy=$test_log . '.copy'; +- if (-e $test_log_copy) { +- unlink $test_log_copy; +- } +- +-EOF +---copy_file $LOG_FILE $LOG_FILE.copy +- +-# +-# now join to the cluster +-# + --eval SET GLOBAL wsrep_cluster_address = '$wsrep_cluster_address_orig'; + + --enable_query_log +diff --git a/mysql-test/suite/galera/include/galera_unload_provider.inc b/mysql-test/suite/galera/include/galera_unload_provider.inc +index cd841f51fbc..ed7e9bc41f0 100644 +--- a/mysql-test/suite/galera/include/galera_unload_provider.inc ++++ b/mysql-test/suite/galera/include/galera_unload_provider.inc +@@ -1,7 +1,6 @@ + --echo Unloading wsrep provider ... + + --let $wsrep_cluster_address_orig = `SELECT @@wsrep_cluster_address` +---let $wsrep_provider_orig = `SELECT @@wsrep_provider` + --let $wsrep_provider_options_orig = `SELECT @@wsrep_provider_options` + --let $wsrep_error_log_orig = `SELECT @@log_error` + if(!$wsrep_log_error_orig) +@@ -12,4 +11,4 @@ if(!$wsrep_log_error_orig) + } + --let LOG_FILE= $wsrep_log_error_orig + +-SET GLOBAL wsrep_provider = 'none'; ++SET GLOBAL wsrep_cluster_address = ''; +diff --git a/mysql-test/suite/galera/r/galera_ist_rsync.result b/mysql-test/suite/galera/r/galera_ist_rsync.result +index 13f7d898a59..70a87c73df7 100644 +--- a/mysql-test/suite/galera/r/galera_ist_rsync.result ++++ b/mysql-test/suite/galera/r/galera_ist_rsync.result +@@ -23,7 +23,7 @@ INSERT INTO t1 VALUES ('node2_committed_before'); + INSERT INTO t1 VALUES ('node2_committed_before'); + COMMIT; + Unloading wsrep provider ... +-SET GLOBAL wsrep_provider = 'none'; ++SET GLOBAL wsrep_cluster_address = ''; + connection node_1; + SET AUTOCOMMIT=OFF; + START TRANSACTION; +diff --git a/mysql-test/suite/galera/r/galera_sst_mysqldump.result b/mysql-test/suite/galera/r/galera_sst_mysqldump.result +index 4ed679ba477..145b3a94775 100644 +--- a/mysql-test/suite/galera/r/galera_sst_mysqldump.result ++++ b/mysql-test/suite/galera/r/galera_sst_mysqldump.result +@@ -30,7 +30,7 @@ INSERT INTO t1 VALUES ('node2_committed_before'); + INSERT INTO t1 VALUES ('node2_committed_before'); + COMMIT; + Unloading wsrep provider ... +-SET GLOBAL wsrep_provider = 'none'; ++SET GLOBAL wsrep_cluster_address = ''; + connection node_1; + SET AUTOCOMMIT=OFF; + START TRANSACTION; +diff --git a/mysql-test/suite/galera/r/mysql-wsrep#33.result b/mysql-test/suite/galera/r/mysql-wsrep#33.result +index fb0b593cc96..45c6a3f660a 100644 +--- a/mysql-test/suite/galera/r/mysql-wsrep#33.result ++++ b/mysql-test/suite/galera/r/mysql-wsrep#33.result +@@ -32,7 +32,7 @@ INSERT INTO t1 VALUES ('node2_committed_before'); + INSERT INTO t1 VALUES ('node2_committed_before'); + COMMIT; + Unloading wsrep provider ... +-SET GLOBAL wsrep_provider = 'none'; ++SET GLOBAL wsrep_cluster_address = ''; + connection node_1; + SET AUTOCOMMIT=OFF; + START TRANSACTION; +diff --git a/mysql-test/suite/sys_vars/r/sysvars_wsrep.result b/mysql-test/suite/sys_vars/r/sysvars_wsrep.result +index 4b6abf85434..f73bfbd13e7 100644 +--- a/mysql-test/suite/sys_vars/r/sysvars_wsrep.result ++++ b/mysql-test/suite/sys_vars/r/sysvars_wsrep.result +@@ -403,7 +403,7 @@ NUMERIC_MIN_VALUE NULL + NUMERIC_MAX_VALUE NULL + NUMERIC_BLOCK_SIZE NULL + ENUM_VALUE_LIST NULL +-READ_ONLY NO ++READ_ONLY YES + COMMAND_LINE_ARGUMENT REQUIRED + GLOBAL_VALUE_PATH NULL + VARIABLE_NAME WSREP_ON +@@ -463,7 +463,7 @@ NUMERIC_MIN_VALUE NULL + NUMERIC_MAX_VALUE NULL + NUMERIC_BLOCK_SIZE NULL + ENUM_VALUE_LIST NULL +-READ_ONLY NO ++READ_ONLY YES + COMMAND_LINE_ARGUMENT REQUIRED + GLOBAL_VALUE_PATH NULL + VARIABLE_NAME WSREP_PROVIDER_OPTIONS +diff --git a/mysql-test/suite/sys_vars/r/wsrep_notify_cmd_basic.result b/mysql-test/suite/sys_vars/r/wsrep_notify_cmd_basic.result +deleted file mode 100644 +index 056ff8c817b..00000000000 +--- a/mysql-test/suite/sys_vars/r/wsrep_notify_cmd_basic.result ++++ /dev/null +@@ -1,47 +0,0 @@ +-# +-# wsrep_notify_cmd +-# +-call mtr.add_suppression("WSREP: Failed to get provider options"); +-# save the initial value +-SET @wsrep_notify_cmd_global_saved = @@global.wsrep_notify_cmd; +-# default +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +- +- +-# scope +-SELECT @@session.wsrep_notify_cmd; +-ERROR HY000: Variable 'wsrep_notify_cmd' is a GLOBAL variable +-SET @@global.wsrep_notify_cmd='notify_cmd'; +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +-notify_cmd +- +-# valid values +-SET @@global.wsrep_notify_cmd='command'; +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +-command +-SET @@global.wsrep_notify_cmd='hyphenated-command'; +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +-hyphenated-command +-SET @@global.wsrep_notify_cmd=default; +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +- +-SET @@global.wsrep_notify_cmd=NULL; +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +-NULL +- +-# invalid values +-SET @@global.wsrep_notify_cmd=1; +-ERROR 42000: Incorrect argument type to variable 'wsrep_notify_cmd' +-SELECT @@global.wsrep_notify_cmd; +-@@global.wsrep_notify_cmd +-NULL +- +-# restore the initial value +-SET @@global.wsrep_notify_cmd = @wsrep_notify_cmd_global_saved; +-# End of test +diff --git a/mysql-test/suite/sys_vars/r/wsrep_provider_basic.result b/mysql-test/suite/sys_vars/r/wsrep_provider_basic.result +deleted file mode 100644 +index 3e4ac8ca883..00000000000 +--- a/mysql-test/suite/sys_vars/r/wsrep_provider_basic.result ++++ /dev/null +@@ -1,40 +0,0 @@ +-# +-# wsrep_provider +-# +-# save the initial value +-SET @wsrep_provider_global_saved = @@global.wsrep_provider; +-# default +-SELECT @@global.wsrep_provider; +-@@global.wsrep_provider +-none +- +-# scope +-SELECT @@session.wsrep_provider; +-ERROR HY000: Variable 'wsrep_provider' is a GLOBAL variable +-SELECT @@global.wsrep_provider; +-@@global.wsrep_provider +-none +- +-# valid values +-SET @@global.wsrep_provider=default; +-SELECT @@global.wsrep_provider; +-@@global.wsrep_provider +-none +- +-# invalid values +-SET @@global.wsrep_provider='/invalid/libgalera_smm.so'; +-ERROR 42000: Variable 'wsrep_provider' can't be set to the value of '/invalid/libgalera_smm.so' +-SET @@global.wsrep_provider=NULL; +-ERROR 42000: Variable 'wsrep_provider' can't be set to the value of 'NULL' +-SELECT @@global.wsrep_provider; +-@@global.wsrep_provider +-none +-SET @@global.wsrep_provider=1; +-ERROR 42000: Incorrect argument type to variable 'wsrep_provider' +-SELECT @@global.wsrep_provider; +-@@global.wsrep_provider +-none +- +-# restore the initial value +-SET @@global.wsrep_provider = @wsrep_provider_global_saved; +-# End of test +diff --git a/mysql-test/suite/sys_vars/r/wsrep_provider_options_basic.result b/mysql-test/suite/sys_vars/r/wsrep_provider_options_basic.result +deleted file mode 100644 +index 15949a14e39..00000000000 +--- a/mysql-test/suite/sys_vars/r/wsrep_provider_options_basic.result ++++ /dev/null +@@ -1,46 +0,0 @@ +-# +-# wsrep_provider_options +-# +-call mtr.add_suppression("WSREP: Failed to get provider options"); +-# default +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +- +-# scope +-SELECT @@session.wsrep_provider_options; +-ERROR HY000: Variable 'wsrep_provider_options' is a GLOBAL variable +-SET @@global.wsrep_provider_options='option1'; +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +- +-# valid values +-SET @@global.wsrep_provider_options='name1=value1;name2=value2'; +-ERROR HY000: WSREP (galera) not started +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +-SET @@global.wsrep_provider_options='hyphenated-name:value'; +-ERROR HY000: WSREP (galera) not started +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +-SET @@global.wsrep_provider_options=default; +-ERROR HY000: WSREP (galera) not started +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +- +-# invalid values +-SET @@global.wsrep_provider_options=1; +-ERROR 42000: Incorrect argument type to variable 'wsrep_provider_options' +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +-SET @@global.wsrep_provider_options=NULL; +-Got one of the listed errors +-SELECT @@global.wsrep_provider_options; +-@@global.wsrep_provider_options +- +-# End of test +diff --git a/mysql-test/suite/sys_vars/t/wsrep_notify_cmd_basic.test b/mysql-test/suite/sys_vars/t/wsrep_notify_cmd_basic.test +deleted file mode 100644 +index 6d1535ba148..00000000000 +--- a/mysql-test/suite/sys_vars/t/wsrep_notify_cmd_basic.test ++++ /dev/null +@@ -1,43 +0,0 @@ +---source include/have_wsrep.inc +- +---echo # +---echo # wsrep_notify_cmd +---echo # +- +-call mtr.add_suppression("WSREP: Failed to get provider options"); +- +---echo # save the initial value +-SET @wsrep_notify_cmd_global_saved = @@global.wsrep_notify_cmd; +- +---echo # default +-SELECT @@global.wsrep_notify_cmd; +- +---echo +---echo # scope +---error ER_INCORRECT_GLOBAL_LOCAL_VAR +-SELECT @@session.wsrep_notify_cmd; +-SET @@global.wsrep_notify_cmd='notify_cmd'; +-SELECT @@global.wsrep_notify_cmd; +- +---echo +---echo # valid values +-SET @@global.wsrep_notify_cmd='command'; +-SELECT @@global.wsrep_notify_cmd; +-SET @@global.wsrep_notify_cmd='hyphenated-command'; +-SELECT @@global.wsrep_notify_cmd; +-SET @@global.wsrep_notify_cmd=default; +-SELECT @@global.wsrep_notify_cmd; +-SET @@global.wsrep_notify_cmd=NULL; +-SELECT @@global.wsrep_notify_cmd; +- +---echo +---echo # invalid values +---error ER_WRONG_TYPE_FOR_VAR +-SET @@global.wsrep_notify_cmd=1; +-SELECT @@global.wsrep_notify_cmd; +- +---echo +---echo # restore the initial value +-SET @@global.wsrep_notify_cmd = @wsrep_notify_cmd_global_saved; +- +---echo # End of test +diff --git a/mysql-test/suite/sys_vars/t/wsrep_provider_basic.test b/mysql-test/suite/sys_vars/t/wsrep_provider_basic.test +deleted file mode 100644 +index 1190ab41bb0..00000000000 +--- a/mysql-test/suite/sys_vars/t/wsrep_provider_basic.test ++++ /dev/null +@@ -1,39 +0,0 @@ +---source include/have_wsrep.inc +- +---echo # +---echo # wsrep_provider +---echo # +- +---echo # save the initial value +-SET @wsrep_provider_global_saved = @@global.wsrep_provider; +- +---echo # default +-SELECT @@global.wsrep_provider; +- +---echo +---echo # scope +---error ER_INCORRECT_GLOBAL_LOCAL_VAR +-SELECT @@session.wsrep_provider; +-SELECT @@global.wsrep_provider; +- +---echo +---echo # valid values +-SET @@global.wsrep_provider=default; +-SELECT @@global.wsrep_provider; +- +---echo +---echo # invalid values +---error ER_WRONG_VALUE_FOR_VAR +-SET @@global.wsrep_provider='/invalid/libgalera_smm.so'; +---error ER_WRONG_VALUE_FOR_VAR +-SET @@global.wsrep_provider=NULL; +-SELECT @@global.wsrep_provider; +---error ER_WRONG_TYPE_FOR_VAR +-SET @@global.wsrep_provider=1; +-SELECT @@global.wsrep_provider; +- +---echo +---echo # restore the initial value +-SET @@global.wsrep_provider = @wsrep_provider_global_saved; +- +---echo # End of test +diff --git a/mysql-test/suite/sys_vars/t/wsrep_provider_options_basic.test b/mysql-test/suite/sys_vars/t/wsrep_provider_options_basic.test +deleted file mode 100644 +index 6eb3a94b6a4..00000000000 +--- a/mysql-test/suite/sys_vars/t/wsrep_provider_options_basic.test ++++ /dev/null +@@ -1,41 +0,0 @@ +---source include/have_wsrep.inc +- +---echo # +---echo # wsrep_provider_options +---echo # +- +-call mtr.add_suppression("WSREP: Failed to get provider options"); +- +---echo # default +-SELECT @@global.wsrep_provider_options; +- +---echo +---echo # scope +---error ER_INCORRECT_GLOBAL_LOCAL_VAR +-SELECT @@session.wsrep_provider_options; +---error 0,ER_WRONG_ARGUMENTS +-SET @@global.wsrep_provider_options='option1'; +-SELECT @@global.wsrep_provider_options; +- +---echo +---echo # valid values +---error ER_WRONG_ARGUMENTS +-SET @@global.wsrep_provider_options='name1=value1;name2=value2'; +-SELECT @@global.wsrep_provider_options; +---error ER_WRONG_ARGUMENTS +-SET @@global.wsrep_provider_options='hyphenated-name:value'; +-SELECT @@global.wsrep_provider_options; +---error ER_WRONG_ARGUMENTS +-SET @@global.wsrep_provider_options=default; +-SELECT @@global.wsrep_provider_options; +- +---echo +---echo # invalid values +---error ER_WRONG_TYPE_FOR_VAR +-SET @@global.wsrep_provider_options=1; +-SELECT @@global.wsrep_provider_options; +---error ER_WRONG_ARGUMENTS,ER_WRONG_ARGUMENTS +-SET @@global.wsrep_provider_options=NULL; +-SELECT @@global.wsrep_provider_options; +- +---echo # End of test +diff --git a/mysql-test/suite/wsrep/disabled.def b/mysql-test/suite/wsrep/disabled.def +index 11577bfe8b0..3d204db6945 100644 +--- a/mysql-test/suite/wsrep/disabled.def ++++ b/mysql-test/suite/wsrep/disabled.def +@@ -10,3 +10,5 @@ + # + ############################################################################## + ++ ++mdev_6832: wsrep_provider is read-only for security reasons +diff --git a/mysql-test/suite/wsrep/r/variables.result b/mysql-test/suite/wsrep/r/variables.result +index a9988fd1628..e57440125ee 100644 +--- a/mysql-test/suite/wsrep/r/variables.result ++++ b/mysql-test/suite/wsrep/r/variables.result +@@ -14,7 +14,6 @@ SET SESSION wsrep_replicate_myisam= ON; + ERROR HY000: Variable 'wsrep_replicate_myisam' is a GLOBAL variable and should be set with SET GLOBAL + SET GLOBAL wsrep_replicate_myisam= ON; + SET GLOBAL wsrep_replicate_myisam= OFF; +-SET GLOBAL wsrep_provider=none; + # + # MDEV#5790: SHOW GLOBAL STATUS LIKE does not show the correct list of + # variables when using "_" +@@ -151,7 +150,6 @@ wsrep_local_state_comment # + # Should show nothing. + SHOW STATUS LIKE 'x'; + Variable_name Value +-SET GLOBAL wsrep_provider=none; + + SHOW STATUS LIKE 'wsrep_local_state_uuid'; + Variable_name Value +@@ -160,7 +158,6 @@ wsrep_local_state_uuid # + SHOW STATUS LIKE 'wsrep_last_committed'; + Variable_name Value + wsrep_last_committed # +-SET GLOBAL wsrep_provider=none; + + # + # MDEV#6206: wsrep_slave_threads subtracts from max_connections +@@ -174,7 +171,7 @@ SELECT @@global.wsrep_slave_threads; + 1 + SELECT @@global.wsrep_cluster_address; + @@global.wsrep_cluster_address +- ++gcomm:// + SELECT @@global.wsrep_on; + @@global.wsrep_on + 1 +@@ -183,14 +180,14 @@ Variable_name Value + Threads_connected 1 + SHOW STATUS LIKE 'wsrep_thread_count'; + Variable_name Value +-wsrep_thread_count 0 ++wsrep_thread_count 2 + + SELECT @@global.wsrep_provider; + @@global.wsrep_provider + libgalera_smm.so + SELECT @@global.wsrep_cluster_address; + @@global.wsrep_cluster_address +- ++gcomm:// + SELECT @@global.wsrep_on; + @@global.wsrep_on + 1 +@@ -199,11 +196,10 @@ Variable_name Value + Threads_connected 1 + SHOW STATUS LIKE 'wsrep_thread_count'; + Variable_name Value +-wsrep_thread_count 0 ++wsrep_thread_count 2 + + # Setting wsrep_cluster_address triggers the creation of + # applier/rollbacker threads. +-SET GLOBAL wsrep_cluster_address= 'gcomm://'; + # Wait for applier thread to get created 1. + # Wait for applier thread to get created 2. + SELECT VARIABLE_VALUE AS EXPECT_1 FROM INFORMATION_SCHEMA.GLOBAL_STATUS WHERE VARIABLE_NAME = 'wsrep_applier_thread_count'; +diff --git a/mysql-test/suite/wsrep/t/variables.test b/mysql-test/suite/wsrep/t/variables.test +index f2c3a0a3b78..fd352b61a3a 100644 +--- a/mysql-test/suite/wsrep/t/variables.test ++++ b/mysql-test/suite/wsrep/t/variables.test +@@ -23,7 +23,7 @@ SET GLOBAL wsrep_replicate_myisam= ON; + + # Reset it back. + SET GLOBAL wsrep_replicate_myisam= OFF; +-SET GLOBAL wsrep_provider=none; ++#SET GLOBAL wsrep_provider=none; + + --echo # + --echo # MDEV#5790: SHOW GLOBAL STATUS LIKE does not show the correct list of +@@ -32,9 +32,6 @@ SET GLOBAL wsrep_provider=none; + + CALL mtr.add_suppression("WSREP: Could not open saved state file for reading.*"); + +---disable_query_log +-eval SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; +---enable_query_log + + --replace_column 2 # + SHOW GLOBAL STATUS LIKE 'wsrep%'; +@@ -50,11 +47,9 @@ SHOW GLOBAL STATUS LIKE 'wsrep_local_state_comment'; + SHOW STATUS LIKE 'x'; + + # Reset it back. +-SET GLOBAL wsrep_provider=none; ++#SET GLOBAL wsrep_provider=none; + +---disable_query_log +-eval SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; +---enable_query_log ++#evalp SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; + + # The following 2 variables are used by mariabackup + # SST. +@@ -66,7 +61,7 @@ SHOW STATUS LIKE 'wsrep_local_state_uuid'; + SHOW STATUS LIKE 'wsrep_last_committed'; + + # Reset it back. +-SET GLOBAL wsrep_provider=none; ++#SET GLOBAL wsrep_provider=none; + + --echo + --echo # +@@ -74,9 +69,7 @@ SET GLOBAL wsrep_provider=none; + --echo # + call mtr.add_suppression("WSREP: Failed to get provider options"); + +---disable_query_log +-eval SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; +---enable_query_log ++#evalp SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; + + --replace_regex /.*libgalera_smm.*/libgalera_smm.so/ + SELECT @@global.wsrep_provider; +@@ -87,9 +80,7 @@ SHOW STATUS LIKE 'threads_connected'; + SHOW STATUS LIKE 'wsrep_thread_count'; + --echo + +---disable_query_log +-eval SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; +---enable_query_log ++#evalp SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; + + --replace_regex /.*libgalera_smm.*/libgalera_smm.so/ + SELECT @@global.wsrep_provider; +@@ -101,7 +92,7 @@ SHOW STATUS LIKE 'wsrep_thread_count'; + + --echo # Setting wsrep_cluster_address triggers the creation of + --echo # applier/rollbacker threads. +-SET GLOBAL wsrep_cluster_address= 'gcomm://'; ++#SET GLOBAL wsrep_cluster_address= 'gcomm://'; + + --echo # Wait for applier thread to get created 1. + --let $wait_condition = SELECT VARIABLE_VALUE = 1 FROM INFORMATION_SCHEMA.GLOBAL_STATUS WHERE VARIABLE_NAME = 'wsrep_applier_thread_count'; +@@ -162,15 +153,6 @@ SET @@global.wsrep_sst_auth= NULL; + SELECT @@global.wsrep_sst_auth; + SET @@global.wsrep_sst_auth= @wsrep_sst_auth_saved; + +-# Reset (for mtr internal checks) +- +---disable_query_log +-SET GLOBAL wsrep_slave_threads= @wsrep_slave_threads_saved; +-eval SET GLOBAL wsrep_provider= '$WSREP_PROVIDER'; +-SET GLOBAL wsrep_cluster_address= @wsrep_cluster_address_saved; +-SET GLOBAL wsrep_provider_options= @wsrep_provider_options_saved; +---enable_query_log +- + --source include/galera_wait_ready.inc + + --echo # End of test. +diff --git a/sql/sys_vars.cc b/sql/sys_vars.cc +index 64040243df0..8c67a4d432a 100644 +--- a/sql/sys_vars.cc ++++ b/sql/sys_vars.cc +@@ -5669,8 +5669,8 @@ static Sys_var_tz Sys_time_zone( + + static Sys_var_charptr_fscs Sys_wsrep_provider( + "wsrep_provider", "Path to replication provider library", +- PREALLOCATED GLOBAL_VAR(wsrep_provider), CMD_LINE(REQUIRED_ARG), +- DEFAULT(WSREP_NONE), ++ PREALLOCATED READ_ONLY GLOBAL_VAR(wsrep_provider), CMD_LINE(REQUIRED_ARG), ++ DEFAULT(WSREP_NONE), + NO_MUTEX_GUARD, NOT_IN_BINLOG, + ON_CHECK(wsrep_provider_check), ON_UPDATE(wsrep_provider_update)); + +@@ -5886,8 +5886,8 @@ static Sys_var_ulong Sys_wsrep_max_ws_rows ( + + static Sys_var_charptr Sys_wsrep_notify_cmd( + "wsrep_notify_cmd", "", +- GLOBAL_VAR(wsrep_notify_cmd),CMD_LINE(REQUIRED_ARG), +- DEFAULT("")); ++ READ_ONLY GLOBAL_VAR(wsrep_notify_cmd), CMD_LINE(REQUIRED_ARG), ++ DEFAULT("")); + + static Sys_var_mybool Sys_wsrep_certify_nonPK( + "wsrep_certify_nonPK", "Certify tables with no primary key", +-- +2.31.0 + diff --git a/gnu/packages/patches/mediastreamer2-srtp2.patch b/gnu/packages/patches/mediastreamer2-srtp2.patch deleted file mode 100644 index f6d494facb..0000000000 --- a/gnu/packages/patches/mediastreamer2-srtp2.patch +++ /dev/null @@ -1,155 +0,0 @@ -From 97903498364ae2596e790cb2c2ce9ac76c04d64a Mon Sep 17 00:00:00 2001 -From: Danmei Chen <danmei.chen@belledonne-communications.com> -Date: Fri, 19 Jan 2018 10:04:07 +0100 -Subject: [PATCH] add compability with srtp2 - ---- - cmake/FindSRTP.cmake | 24 ++++++++++++++++++++---- - src/CMakeLists.txt | 1 + - src/crypto/ms_srtp.c | 10 ++-------- - src/utils/srtp_prefix.h | 41 +++++++++++++++++++++++++++++++++++++++++ - 4 files changed, 64 insertions(+), 12 deletions(-) - create mode 100644 src/utils/srtp_prefix.h - -diff --git a/cmake/FindSRTP.cmake b/cmake/FindSRTP.cmake -index 988b846a..f720ce7e 100644 ---- a/cmake/FindSRTP.cmake -+++ b/cmake/FindSRTP.cmake -@@ -31,20 +31,36 @@ set(_SRTP_ROOT_PATHS - ) - - find_path(SRTP_INCLUDE_DIRS -- NAMES srtp/srtp.h -+ NAMES srtp2/srtp.h - HINTS _SRTP_ROOT_PATHS - PATH_SUFFIXES include - ) - - if(SRTP_INCLUDE_DIRS) - set(HAVE_SRTP_SRTP_H 1) --endif() -- --find_library(SRTP_LIBRARIES -+ set(SRTP_VERSION 2) -+ find_library(SRTP_LIBRARIES -+ NAMES srtp2 -+ HINTS ${_SRTP_ROOT_PATHS} -+ PATH_SUFFIXES bin lib -+ ) -+else() -+ find_path(SRTP_INCLUDE_DIRS -+ NAMES srtp/srtp.h -+ HINTS _SRTP_ROOT_PATHS -+ PATH_SUFFIXES include -+ ) -+ if(SRTP_INCLUDE_DIRS) -+ set(HAVE_SRTP_SRTP_H 1) -+ set(SRTP_VERSION 1) -+ endif() -+ find_library(SRTP_LIBRARIES - NAMES srtp - HINTS ${_SRTP_ROOT_PATHS} - PATH_SUFFIXES bin lib - ) -+endif() -+ - - include(FindPackageHandleStandardArgs) - find_package_handle_standard_args(SRTP -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index da429764..c46faa62 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -183,6 +183,7 @@ set(VOIP_SOURCE_FILES_C - utils/pcap_sender.c - utils/pcap_sender.h - utils/stream_regulator.c -+ utils/srtp_prefix.h - voip/audioconference.c - voip/audiostream.c - voip/bandwidthcontroller.c -diff --git a/src/crypto/ms_srtp.c b/src/crypto/ms_srtp.c -index 5a510c99..67810316 100644 ---- a/src/crypto/ms_srtp.c -+++ b/src/crypto/ms_srtp.c -@@ -25,6 +25,7 @@ - #include "mediastreamer2/ms_srtp.h" - #include "mediastreamer2/mediastream.h" - -+ - #ifdef HAVE_SRTP - - /*srtp defines all this stuff*/ -@@ -34,13 +35,7 @@ - #undef PACKAGE_TARNAME - #undef PACKAGE_VERSION - --#if defined(MS2_WINDOWS_PHONE) --// Windows phone doesn't use make install --#include <srtp.h> --#else --#include <srtp/srtp.h> --#endif -- -+#include "srtp_prefix.h" - - #include "ortp/b64.h" - -@@ -352,7 +347,6 @@ int ms_srtp_init(void) - srtp_init_done++; - }else{ - ms_fatal("Couldn't initialize SRTP library: %d.", st); -- err_reporting_init("mediastreamer2"); - } - }else srtp_init_done++; - return (int)st; -diff --git a/src/utils/srtp_prefix.h b/src/utils/srtp_prefix.h -new file mode 100644 -index 00000000..68bde496 ---- /dev/null -+++ b/src/utils/srtp_prefix.h -@@ -0,0 +1,41 @@ -+/* -+ mediastreamer2 library - modular sound and video processing and streaming -+ Copyright (C) 2006-2014 Belledonne Communications, Grenoble -+ -+ This library is free software; you can redistribute it and/or -+ modify it under the terms of the GNU Lesser General Public -+ License as published by the Free Software Foundation; either -+ version 2.1 of the License, or (at your option) any later version. -+ -+ This library is distributed in the hope that it will be useful, -+ but WITHOUT ANY WARRANTY; without even the implied warranty of -+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -+ Lesser General Public License for more details. -+ -+ You should have received a copy of the GNU Lesser General Public -+ License along with this library; if not, write to the Free Software -+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -+*/ -+#ifndef __SRTP2_H__ -+#define __SRTP2_H__ -+ -+#if defined(MS2_WINDOWS_PHONE) -+// Windows phone doesn't use make install -+#include <srtp.h> -+#elif SRTP_VERSION==1 -+#include <srtp/srtp.h> -+#else -+#include <srtp2/srtp.h> -+#define err_status_t srtp_err_status_t -+#define err_status_ok srtp_err_status_ok -+#define crypto_policy_t srtp_crypto_policy_t -+#define crypto_policy_set_aes_cm_256_hmac_sha1_80 srtp_crypto_policy_set_aes_cm_256_hmac_sha1_80 -+#define crypto_policy_set_aes_cm_128_hmac_sha1_32 srtp_crypto_policy_set_aes_cm_128_hmac_sha1_32 -+#define crypto_policy_set_aes_cm_128_null_auth srtp_crypto_policy_set_aes_cm_128_null_auth -+#define crypto_policy_set_null_cipher_hmac_sha1_80 srtp_crypto_policy_set_null_cipher_hmac_sha1_80 -+#define crypto_policy_set_aes_cm_128_hmac_sha1_80 srtp_crypto_policy_set_aes_cm_128_hmac_sha1_80 -+#define crypto_policy_set_aes_cm_256_hmac_sha1_32 srtp_crypto_policy_set_aes_cm_256_hmac_sha1_32 -+#define ssrc_t srtp_ssrc_t -+#endif -+ -+#endif --- -2.21.0 - diff --git a/gnu/packages/patches/opendht-fix-jami.patch b/gnu/packages/patches/opendht-fix-jami.patch deleted file mode 100644 index 9718a84a41..0000000000 --- a/gnu/packages/patches/opendht-fix-jami.patch +++ /dev/null @@ -1,33 +0,0 @@ -From e2b39dd3a0742853e00f9c3e8c46c911da20bed7 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Adrien=20B=C3=A9raud?= <adrien.beraud@savoirfairelinux.com> -Date: Tue, 30 Jun 2020 10:42:49 -0400 -Subject: [PATCH 1/4] http/request: make terminate public - ---- - include/opendht/http.h | 3 +-- - 1 file changed, 1 insertion(+), 2 deletions(-) - -diff --git a/include/opendht/http.h b/include/opendht/http.h -index cc8d5f9..46b722c 100644 ---- a/include/opendht/http.h -+++ b/include/opendht/http.h -@@ -294,6 +294,7 @@ public: - * User action to cancel the Request and call the completion callbacks. - */ - void cancel(); -+ void terminate(const asio::error_code& ec); - - private: - using OnCompleteCb = std::function<void()>; -@@ -320,8 +321,6 @@ private: - - void connect(std::vector<asio::ip::tcp::endpoint>&& endpoints, HandlerCb cb = {}); - -- void terminate(const asio::error_code& ec); -- - void post(); - - void handle_request(const asio::error_code& ec); --- -2.27.0 - diff --git a/gnu/packages/patches/pidgin-vv-gst.patch b/gnu/packages/patches/pidgin-vv-gst.patch deleted file mode 100644 index e0553dd119..0000000000 --- a/gnu/packages/patches/pidgin-vv-gst.patch +++ /dev/null @@ -1,48 +0,0 @@ -Name: Gary Kramlich -Date: 2020-07-12 -Source: https://keep.imfreedom.org/pidgin/pidgin/rev/39ac50435cfb - -diff --git a/libpurple/mediamanager.c b/libpurple/mediamanager.c ---- a/libpurple/mediamanager.c -+++ b/libpurple/mediamanager.c -@@ -2231,6 +2231,7 @@ - purple_media_manager_unregister_gst_device(PurpleMediaManager *manager, - GstDevice *device) - { -+#ifdef USE_VV - GList *i; - gchar *name; - gchar *device_class; -@@ -2277,6 +2278,7 @@ - - g_free(name); - g_free(device_class); -+#endif /* USE_VV */ - } - - static gboolean -@@ -2304,7 +2306,7 @@ - static void - purple_media_manager_init_device_monitor(PurpleMediaManager *manager) - { --#if GST_CHECK_VERSION(1, 4, 0) -+#if GST_CHECK_VERSION(1, 4, 0) && defined(USE_VV) - GstBus *bus; - GList *i; - -@@ -2334,6 +2336,7 @@ - PurpleMediaElementType type) - { - GList *result = NULL; -+#ifdef USE_VV - GList *i; - - for (i = manager->priv->elements; i; i = i->next) { -@@ -2347,6 +2350,7 @@ - result = g_list_prepend(result, info); - } - } -+#endif /* USE_VV */ - - return result; - } diff --git a/gnu/packages/patches/pyqt-public-sip.patch b/gnu/packages/patches/pyqt-public-sip.patch deleted file mode 100644 index 44cdcb6371..0000000000 --- a/gnu/packages/patches/pyqt-public-sip.patch +++ /dev/null @@ -1,55 +0,0 @@ -https://sources.debian.org/data/main/p/pyqt5/5.11.3+dfsg-1/debian/patches/public_sip.diff - -From: Dmitry Shachnev <mitya57@debian.org> -Date: Tue, 3 Jul 2018 09:46:42 +0300 -Subject: Use the public version of sip module - -Per https://www.debian.org/doc/debian-policy/#convenience-copies-of-code. ---- - configure.py | 2 +- - designer/pluginloader.cpp | 2 +- - qmlscene/pluginloader.cpp | 4 ++-- - 3 files changed, 4 insertions(+), 4 deletions(-) - -diff --git a/configure.py b/configure.py -index 32d03a0..3c43a14 100644 ---- a/configure.py -+++ b/configure.py -@@ -2440,7 +2440,7 @@ def get_sip_flags(target_config): - the target configuration. - """ - -- sip_flags = ['-n', 'PyQt5.sip'] -+ sip_flags = ['-n', 'sip'] - - # If we don't check for signed interpreters, we exclude the 'VendorID' - # feature -diff --git a/designer/pluginloader.cpp b/designer/pluginloader.cpp -index f41d391..3ca8b11 100644 ---- a/designer/pluginloader.cpp -+++ b/designer/pluginloader.cpp -@@ -167,7 +167,7 @@ bool PyCustomWidgets::importPlugins(const QString &dir, const QStringList &plugi - // Make sure we have sip.unwrapinstance. - if (!sip_unwrapinstance) - { -- sip_unwrapinstance = getModuleAttr("PyQt5.sip", "unwrapinstance"); -+ sip_unwrapinstance = getModuleAttr("sip", "unwrapinstance"); - - if (!sip_unwrapinstance) - return true; -diff --git a/qmlscene/pluginloader.cpp b/qmlscene/pluginloader.cpp -index e14b946..140e80c 100644 ---- a/qmlscene/pluginloader.cpp -+++ b/qmlscene/pluginloader.cpp -@@ -412,9 +412,9 @@ PyObject *PyQt5QmlPlugin::getModuleAttr(const char *module, const char *attr) - void PyQt5QmlPlugin::getSipAPI() - { - #if defined(SIP_USE_PYCAPSULE) -- sip = (const sipAPIDef *)PyCapsule_Import("PyQt5.sip._C_API", 0); -+ sip = (const sipAPIDef *)PyCapsule_Import("sip._C_API", 0); - #else -- PyObject *c_api = getModuleAttr("PyQt5.sip", "_C_API"); -+ PyObject *c_api = getModuleAttr("sip", "_C_API"); - - if (c_api) - { diff --git a/gnu/packages/patches/qemu-build-info-manual.patch b/gnu/packages/patches/qemu-build-info-manual.patch index c837040d45..f2bee30ab0 100644 --- a/gnu/packages/patches/qemu-build-info-manual.patch +++ b/gnu/packages/patches/qemu-build-info-manual.patch @@ -90,7 +90,7 @@ index ebd85d59f9..1243839461 100644 + output: 'QEMU.info', + install: true, + install_dir: get_option('infodir'), -+ command: [makeinfo, '@INPUT0@', '--output=@OUTPUT@']) ++ command: [makeinfo, '--no-split', '@INPUT0@', '--output=@OUTPUT@']) + alias_target('texi', sphinxtexi) + alias_target('info', sphinxinfo) + endif diff --git a/gnu/packages/patches/qemu-glibc-2.30.patch b/gnu/packages/patches/qemu-glibc-2.30.patch new file mode 100644 index 0000000000..1b74dee4ac --- /dev/null +++ b/gnu/packages/patches/qemu-glibc-2.30.patch @@ -0,0 +1,57 @@ +This patch was taken from NixOS +https://raw.githubusercontent.com/Mindavi/nixpkgs/1a737743a829746e48f4869ac517ff29c23c9d09/pkgs/tools/security/afl/qemu-patches/syscall-glibc2_30.diff +It is based on an unmerged patch against american-fuzzy-lop and was +never merged upstream because the author was unable to sign Google's CLA. +Based on https://github.com/google/AFL/commit/6c917e3d63a2a0685d58c3518524f9615b001893.patch + +--- qemu-2.10.0-clean/linux-user/syscall.c 2020-03-12 18:47:47.898592169 +0100 ++++ qemu-2.10.0/linux-user/syscall.c 2020-03-13 09:13:42.461809699 +0100 +@@ -34,6 +34,7 @@ + #include <sys/resource.h> + #include <sys/swap.h> + #include <linux/capability.h> ++#include <linux/sockios.h> // https://lkml.org/lkml/2019/6/3/988 + #include <sched.h> + #include <sys/timex.h> + #ifdef __ia64__ +@@ -256,7 +257,9 @@ static type name (type1 arg1,type2 arg2, + #endif + + #ifdef __NR_gettid +-_syscall0(int, gettid) ++// taken from https://patchwork.kernel.org/patch/10862231/ ++#define __NR_sys_gettid __NR_gettid ++_syscall0(int, sys_gettid) + #else + /* This is a replacement for the host gettid() and must return a host + errno. */ +@@ -6219,7 +6222,7 @@ static void *clone_func(void *arg) + cpu = ENV_GET_CPU(env); + thread_cpu = cpu; + ts = (TaskState *)cpu->opaque; +- info->tid = gettid(); ++ info->tid = sys_gettid(); + task_settid(ts); + if (info->child_tidptr) + put_user_u32(info->tid, info->child_tidptr); +@@ -6363,9 +6366,9 @@ static int do_fork(CPUArchState *env, un + mapping. We can't repeat the spinlock hack used above because + the child process gets its own copy of the lock. */ + if (flags & CLONE_CHILD_SETTID) +- put_user_u32(gettid(), child_tidptr); ++ put_user_u32(sys_gettid(), child_tidptr); + if (flags & CLONE_PARENT_SETTID) +- put_user_u32(gettid(), parent_tidptr); ++ put_user_u32(sys_gettid(), parent_tidptr); + ts = (TaskState *)cpu->opaque; + if (flags & CLONE_SETTLS) + cpu_set_tls (env, newtls); +@@ -11402,7 +11405,7 @@ abi_long do_syscall(void *cpu_env, int n + break; + #endif + case TARGET_NR_gettid: +- ret = get_errno(gettid()); ++ ret = get_errno(sys_gettid()); + break; + #ifdef TARGET_NR_readahead + case TARGET_NR_readahead: diff --git a/gnu/packages/patches/racket-sh-via-rktio.patch b/gnu/packages/patches/racket-sh-via-rktio.patch new file mode 100644 index 0000000000..b4fefd1514 --- /dev/null +++ b/gnu/packages/patches/racket-sh-via-rktio.patch @@ -0,0 +1,87 @@ +From 3574b567c486d264d680a37586436c3b5a8cb978 Mon Sep 17 00:00:00 2001 +From: Philip McGrath <philip@philipmcgrath.com> +Date: Thu, 4 Mar 2021 04:11:50 -0500 +Subject: [PATCH] patch rktio_process for "/bin/sh" on Guix + +Racket provides the functions `system` and `process`, +which execute shell commands using `sh` (or `cmd` on Windows). +Racket assumes that `sh` can be found at "/bin/sh", +which is not necessarily true on Guix. + +This patch adds a special case for "/bin/sh" to `rktio_process`, +the C function that implements the core of `system`, `process`, +and related Racket functions. + +Guix should enable the special case by defining the C preprocessor +macro `GUIX_RKTIO_PATCH_BIN_SH` with the path to `sh` in the store. +If: + + 1. The `GUIX_RKTIO_PATCH_BIN_SH` macro is defined; and + + 2. `rktio_process` is called with the exact path "/bin/sh"; and + + 3. The path specified by `GUIX_RKTIO_PATCH_BIN_SH` does exists; + +then `rktio_process` will execute the file specified +by `GUIX_RKTIO_PATCH_BIN_SH` instead of "/bin/sh". + +Compared to previous attempts to patch the Racket sources, +making this change at the C level is both: + + - More comprehensive: it catches all attempts to execute "/bin/sh", + without having to track down the source of every occurance; and + + - Less intrusive: by guarding the special case with a C preprocessor + conditional and a runtime check that the file in the store exists, + we make it much less likely that it will "leak" out of Guix. +--- + src/rktio/rktio_process.c | 21 ++++++++++++++++++++- + 1 file changed, 20 insertions(+), 1 deletion(-) + +diff --git a/src/rktio/rktio_process.c b/src/rktio/rktio_process.c +index 89202436c0..465ebdd5c5 100644 +--- a/src/rktio/rktio_process.c ++++ b/src/rktio/rktio_process.c +@@ -1224,12 +1224,14 @@ int rktio_process_allowed_flags(rktio_t *rktio) + /*========================================================================*/ + + rktio_process_result_t *rktio_process(rktio_t *rktio, +- const char *command, int argc, rktio_const_string_t *argv, ++ /* PATCHED for Guix (next line) */ ++ const char *_guix_orig_command, int argc, rktio_const_string_t *argv, + rktio_fd_t *stdout_fd, rktio_fd_t *stdin_fd, rktio_fd_t *stderr_fd, + rktio_process_t *group_proc, + const char *current_directory, rktio_envvars_t *envvars, + int flags) + { ++ const char *command; /* PATCHED for Guix */ + rktio_process_result_t *result; + intptr_t to_subprocess[2], from_subprocess[2], err_subprocess[2]; + int pid; +@@ -1255,6 +1257,23 @@ rktio_process_result_t *rktio_process(rktio_t *rktio, + int i; + #endif + ++/* BEGIN PATCH for Guix */ ++#if defined(GUIX_RKTIO_PATCH_BIN_SH) ++# define GUIX_AS_a_STR_HELPER(x) #x ++# define GUIX_AS_a_STR(x) GUIX_AS_a_STR_HELPER(x) ++ /* A level of indirection makes `#` work as needed: */ ++ command = ++ ((0 == strcmp(_guix_orig_command, "/bin/sh")) ++ && rktio_file_exists(rktio, GUIX_AS_a_STR(GUIX_RKTIO_PATCH_BIN_SH))) ++ ? GUIX_AS_a_STR(GUIX_RKTIO_PATCH_BIN_SH) ++ : _guix_orig_command; ++# undef GUIX_AS_a_STR ++# undef GUIX_AS_a_STR_HELPER ++#else ++ command = _guix_orig_command; ++#endif ++/* END PATCH for Guix */ ++ + /* avoid compiler warnings: */ + to_subprocess[0] = -1; + to_subprocess[1] = -1; +-- +2.21.1 (Apple Git-122.3) + diff --git a/gnu/packages/patches/runc-CVE-2019-5736.patch b/gnu/packages/patches/runc-CVE-2019-5736.patch deleted file mode 100644 index f629fcbfb4..0000000000 --- a/gnu/packages/patches/runc-CVE-2019-5736.patch +++ /dev/null @@ -1,343 +0,0 @@ -Fix CVE-2019-5736: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2019-5736 -https://seclists.org/oss-sec/2019/q1/119 - -Patch copied from upstream source repository: - -https://github.com/opencontainers/runc/commit/0a8e4117e7f715d5fbeef398405813ce8e88558b - -From 0a8e4117e7f715d5fbeef398405813ce8e88558b Mon Sep 17 00:00:00 2001 -From: Aleksa Sarai <asarai@suse.de> -Date: Wed, 9 Jan 2019 13:40:01 +1100 -Subject: [PATCH] nsenter: clone /proc/self/exe to avoid exposing host binary - to container - -There are quite a few circumstances where /proc/self/exe pointing to a -pretty important container binary is a _bad_ thing, so to avoid this we -have to make a copy (preferably doing self-clean-up and not being -writeable). - -We require memfd_create(2) -- though there is an O_TMPFILE fallback -- -but we can always extend this to use a scratch MNT_DETACH overlayfs or -tmpfs. The main downside to this approach is no page-cache sharing for -the runc binary (which overlayfs would give us) but this is far less -complicated. - -This is only done during nsenter so that it happens transparently to the -Go code, and any libcontainer users benefit from it. This also makes -ExtraFiles and --preserve-fds handling trivial (because we don't need to -worry about it). - -Fixes: CVE-2019-5736 -Co-developed-by: Christian Brauner <christian.brauner@ubuntu.com> -Signed-off-by: Aleksa Sarai <asarai@suse.de> ---- - libcontainer/nsenter/cloned_binary.c | 268 +++++++++++++++++++++++++++ - libcontainer/nsenter/nsexec.c | 11 ++ - 2 files changed, 279 insertions(+) - create mode 100644 libcontainer/nsenter/cloned_binary.c - -diff --git a/libcontainer/nsenter/cloned_binary.c b/libcontainer/nsenter/cloned_binary.c -new file mode 100644 -index 000000000..c8a42c23f ---- /dev/null -+++ b/libcontainer/nsenter/cloned_binary.c -@@ -0,0 +1,268 @@ -+/* -+ * Copyright (C) 2019 Aleksa Sarai <cyphar@cyphar.com> -+ * Copyright (C) 2019 SUSE LLC -+ * -+ * Licensed under the Apache License, Version 2.0 (the "License"); -+ * you may not use this file except in compliance with the License. -+ * You may obtain a copy of the License at -+ * -+ * http://www.apache.org/licenses/LICENSE-2.0 -+ * -+ * Unless required by applicable law or agreed to in writing, software -+ * distributed under the License is distributed on an "AS IS" BASIS, -+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -+ * See the License for the specific language governing permissions and -+ * limitations under the License. -+ */ -+ -+#define _GNU_SOURCE -+#include <unistd.h> -+#include <stdio.h> -+#include <stdlib.h> -+#include <stdbool.h> -+#include <string.h> -+#include <limits.h> -+#include <fcntl.h> -+#include <errno.h> -+ -+#include <sys/types.h> -+#include <sys/stat.h> -+#include <sys/vfs.h> -+#include <sys/mman.h> -+#include <sys/sendfile.h> -+#include <sys/syscall.h> -+ -+/* Use our own wrapper for memfd_create. */ -+#if !defined(SYS_memfd_create) && defined(__NR_memfd_create) -+# define SYS_memfd_create __NR_memfd_create -+#endif -+#ifdef SYS_memfd_create -+# define HAVE_MEMFD_CREATE -+/* memfd_create(2) flags -- copied from <linux/memfd.h>. */ -+# ifndef MFD_CLOEXEC -+# define MFD_CLOEXEC 0x0001U -+# define MFD_ALLOW_SEALING 0x0002U -+# endif -+int memfd_create(const char *name, unsigned int flags) -+{ -+ return syscall(SYS_memfd_create, name, flags); -+} -+#endif -+ -+/* This comes directly from <linux/fcntl.h>. */ -+#ifndef F_LINUX_SPECIFIC_BASE -+# define F_LINUX_SPECIFIC_BASE 1024 -+#endif -+#ifndef F_ADD_SEALS -+# define F_ADD_SEALS (F_LINUX_SPECIFIC_BASE + 9) -+# define F_GET_SEALS (F_LINUX_SPECIFIC_BASE + 10) -+#endif -+#ifndef F_SEAL_SEAL -+# define F_SEAL_SEAL 0x0001 /* prevent further seals from being set */ -+# define F_SEAL_SHRINK 0x0002 /* prevent file from shrinking */ -+# define F_SEAL_GROW 0x0004 /* prevent file from growing */ -+# define F_SEAL_WRITE 0x0008 /* prevent writes */ -+#endif -+ -+#define RUNC_SENDFILE_MAX 0x7FFFF000 /* sendfile(2) is limited to 2GB. */ -+#ifdef HAVE_MEMFD_CREATE -+# define RUNC_MEMFD_COMMENT "runc_cloned:/proc/self/exe" -+# define RUNC_MEMFD_SEALS \ -+ (F_SEAL_SEAL | F_SEAL_SHRINK | F_SEAL_GROW | F_SEAL_WRITE) -+#endif -+ -+static void *must_realloc(void *ptr, size_t size) -+{ -+ void *old = ptr; -+ do { -+ ptr = realloc(old, size); -+ } while(!ptr); -+ return ptr; -+} -+ -+/* -+ * Verify whether we are currently in a self-cloned program (namely, is -+ * /proc/self/exe a memfd). F_GET_SEALS will only succeed for memfds (or rather -+ * for shmem files), and we want to be sure it's actually sealed. -+ */ -+static int is_self_cloned(void) -+{ -+ int fd, ret, is_cloned = 0; -+ -+ fd = open("/proc/self/exe", O_RDONLY|O_CLOEXEC); -+ if (fd < 0) -+ return -ENOTRECOVERABLE; -+ -+#ifdef HAVE_MEMFD_CREATE -+ ret = fcntl(fd, F_GET_SEALS); -+ is_cloned = (ret == RUNC_MEMFD_SEALS); -+#else -+ struct stat statbuf = {0}; -+ ret = fstat(fd, &statbuf); -+ if (ret >= 0) -+ is_cloned = (statbuf.st_nlink == 0); -+#endif -+ close(fd); -+ return is_cloned; -+} -+ -+/* -+ * Basic wrapper around mmap(2) that gives you the file length so you can -+ * safely treat it as an ordinary buffer. Only gives you read access. -+ */ -+static char *read_file(char *path, size_t *length) -+{ -+ int fd; -+ char buf[4096], *copy = NULL; -+ -+ if (!length) -+ return NULL; -+ -+ fd = open(path, O_RDONLY | O_CLOEXEC); -+ if (fd < 0) -+ return NULL; -+ -+ *length = 0; -+ for (;;) { -+ int n; -+ -+ n = read(fd, buf, sizeof(buf)); -+ if (n < 0) -+ goto error; -+ if (!n) -+ break; -+ -+ copy = must_realloc(copy, (*length + n) * sizeof(*copy)); -+ memcpy(copy + *length, buf, n); -+ *length += n; -+ } -+ close(fd); -+ return copy; -+ -+error: -+ close(fd); -+ free(copy); -+ return NULL; -+} -+ -+/* -+ * A poor-man's version of "xargs -0". Basically parses a given block of -+ * NUL-delimited data, within the given length and adds a pointer to each entry -+ * to the array of pointers. -+ */ -+static int parse_xargs(char *data, int data_length, char ***output) -+{ -+ int num = 0; -+ char *cur = data; -+ -+ if (!data || *output != NULL) -+ return -1; -+ -+ while (cur < data + data_length) { -+ num++; -+ *output = must_realloc(*output, (num + 1) * sizeof(**output)); -+ (*output)[num - 1] = cur; -+ cur += strlen(cur) + 1; -+ } -+ (*output)[num] = NULL; -+ return num; -+} -+ -+/* -+ * "Parse" out argv and envp from /proc/self/cmdline and /proc/self/environ. -+ * This is necessary because we are running in a context where we don't have a -+ * main() that we can just get the arguments from. -+ */ -+static int fetchve(char ***argv, char ***envp) -+{ -+ char *cmdline = NULL, *environ = NULL; -+ size_t cmdline_size, environ_size; -+ -+ cmdline = read_file("/proc/self/cmdline", &cmdline_size); -+ if (!cmdline) -+ goto error; -+ environ = read_file("/proc/self/environ", &environ_size); -+ if (!environ) -+ goto error; -+ -+ if (parse_xargs(cmdline, cmdline_size, argv) <= 0) -+ goto error; -+ if (parse_xargs(environ, environ_size, envp) <= 0) -+ goto error; -+ -+ return 0; -+ -+error: -+ free(environ); -+ free(cmdline); -+ return -EINVAL; -+} -+ -+static int clone_binary(void) -+{ -+ int binfd, memfd; -+ ssize_t sent = 0; -+ -+#ifdef HAVE_MEMFD_CREATE -+ memfd = memfd_create(RUNC_MEMFD_COMMENT, MFD_CLOEXEC | MFD_ALLOW_SEALING); -+#else -+ memfd = open("/tmp", O_TMPFILE | O_EXCL | O_RDWR | O_CLOEXEC, 0711); -+#endif -+ if (memfd < 0) -+ return -ENOTRECOVERABLE; -+ -+ binfd = open("/proc/self/exe", O_RDONLY | O_CLOEXEC); -+ if (binfd < 0) -+ goto error; -+ -+ sent = sendfile(memfd, binfd, NULL, RUNC_SENDFILE_MAX); -+ close(binfd); -+ if (sent < 0) -+ goto error; -+ -+#ifdef HAVE_MEMFD_CREATE -+ int err = fcntl(memfd, F_ADD_SEALS, RUNC_MEMFD_SEALS); -+ if (err < 0) -+ goto error; -+#else -+ /* Need to re-open "memfd" as read-only to avoid execve(2) giving -EXTBUSY. */ -+ int newfd; -+ char *fdpath = NULL; -+ -+ if (asprintf(&fdpath, "/proc/self/fd/%d", memfd) < 0) -+ goto error; -+ newfd = open(fdpath, O_RDONLY | O_CLOEXEC); -+ free(fdpath); -+ if (newfd < 0) -+ goto error; -+ -+ close(memfd); -+ memfd = newfd; -+#endif -+ return memfd; -+ -+error: -+ close(memfd); -+ return -EIO; -+} -+ -+int ensure_cloned_binary(void) -+{ -+ int execfd; -+ char **argv = NULL, **envp = NULL; -+ -+ /* Check that we're not self-cloned, and if we are then bail. */ -+ int cloned = is_self_cloned(); -+ if (cloned > 0 || cloned == -ENOTRECOVERABLE) -+ return cloned; -+ -+ if (fetchve(&argv, &envp) < 0) -+ return -EINVAL; -+ -+ execfd = clone_binary(); -+ if (execfd < 0) -+ return -EIO; -+ -+ fexecve(execfd, argv, envp); -+ return -ENOEXEC; -+} -diff --git a/libcontainer/nsenter/nsexec.c b/libcontainer/nsenter/nsexec.c -index 28269dfc0..7750af35e 100644 ---- a/libcontainer/nsenter/nsexec.c -+++ b/libcontainer/nsenter/nsexec.c -@@ -534,6 +534,9 @@ void join_namespaces(char *nslist) - free(namespaces); - } - -+/* Defined in cloned_binary.c. */ -+extern int ensure_cloned_binary(void); -+ - void nsexec(void) - { - int pipenum; -@@ -549,6 +552,14 @@ void nsexec(void) - if (pipenum == -1) - return; - -+ /* -+ * We need to re-exec if we are not in a cloned binary. This is necessary -+ * to ensure that containers won't be able to access the host binary -+ * through /proc/self/exe. See CVE-2019-5736. -+ */ -+ if (ensure_cloned_binary() < 0) -+ bail("could not ensure we are a cloned binary"); -+ - /* Parse all of the netlink configuration. */ - nl_parse(pipenum, &config); - diff --git a/gnu/packages/patches/upx-CVE-2021-20285.patch b/gnu/packages/patches/upx-CVE-2021-20285.patch new file mode 100644 index 0000000000..1d47b2a8bb --- /dev/null +++ b/gnu/packages/patches/upx-CVE-2021-20285.patch @@ -0,0 +1,76 @@ +From 3781df9da23840e596d5e9e8493f22666802fe6c Mon Sep 17 00:00:00 2001 +From: John Reiser <jreiser@BitWagon.com> +Date: Fri, 11 Dec 2020 13:38:18 -0800 +Subject: [PATCH] Check DT_REL/DT_RELA, DT_RELSZ/DT_RELASZ + +https://github.com/upx/upx/issues/421 + modified: p_lx_elf.cpp +--- + src/p_lx_elf.cpp | 34 +++++++++++++++++++++++++++++----- + 1 file changed, 29 insertions(+), 5 deletions(-) + +diff --git a/src/p_lx_elf.cpp b/src/p_lx_elf.cpp +index 182db192..3a4101cf 100644 +--- a/src/p_lx_elf.cpp ++++ b/src/p_lx_elf.cpp +@@ -2222,8 +2222,20 @@ bool PackLinuxElf32::canPack() + int z_rsz = dt_table[Elf32_Dyn::DT_RELSZ]; + if (z_rel && z_rsz) { + unsigned rel_off = get_te32(&dynseg[-1+ z_rel].d_val); ++ if ((unsigned)file_size <= rel_off) { ++ char msg[70]; snprintf(msg, sizeof(msg), ++ "bad Elf32_Dynamic[DT_REL] %#x\n", ++ rel_off); ++ throwCantPack(msg); ++ } + Elf32_Rel *rp = (Elf32_Rel *)&file_image[rel_off]; + unsigned relsz = get_te32(&dynseg[-1+ z_rsz].d_val); ++ if ((unsigned)file_size <= relsz) { ++ char msg[70]; snprintf(msg, sizeof(msg), ++ "bad Elf32_Dynamic[DT_RELSZ] %#x\n", ++ relsz); ++ throwCantPack(msg); ++ } + Elf32_Rel *last = (Elf32_Rel *)(relsz + (char *)rp); + for (; rp < last; ++rp) { + unsigned r_va = get_te32(&rp->r_offset); +@@ -2562,14 +2574,26 @@ PackLinuxElf64::canPack() + int z_rel = dt_table[Elf64_Dyn::DT_RELA]; + int z_rsz = dt_table[Elf64_Dyn::DT_RELASZ]; + if (z_rel && z_rsz) { +- unsigned rel_off = get_te64(&dynseg[-1+ z_rel].d_val); ++ upx_uint64_t rel_off = get_te64(&dynseg[-1+ z_rel].d_val); ++ if ((u64_t)file_size <= rel_off) { ++ char msg[70]; snprintf(msg, sizeof(msg), ++ "bad Elf64_Dynamic[DT_RELA] %#llx\n", ++ rel_off); ++ throwCantPack(msg); ++ } + Elf64_Rela *rp = (Elf64_Rela *)&file_image[rel_off]; +- unsigned relsz = get_te64(&dynseg[-1+ z_rsz].d_val); ++ upx_uint64_t relsz = get_te64(&dynseg[-1+ z_rsz].d_val); ++ if ((u64_t)file_size <= relsz) { ++ char msg[70]; snprintf(msg, sizeof(msg), ++ "bad Elf64_Dynamic[DT_RELASZ] %#llx\n", ++ relsz); ++ throwCantPack(msg); ++ } + Elf64_Rela *last = (Elf64_Rela *)(relsz + (char *)rp); + for (; rp < last; ++rp) { +- unsigned r_va = get_te64(&rp->r_offset); ++ upx_uint64_t r_va = get_te64(&rp->r_offset); + if (r_va == user_init_ava) { // found the Elf64_Rela +- unsigned r_info = get_te64(&rp->r_info); ++ upx_uint64_t r_info = get_te64(&rp->r_info); + unsigned r_type = ELF64_R_TYPE(r_info); + if (Elf64_Ehdr::EM_AARCH64 == e_machine + && R_AARCH64_RELATIVE == r_type) { +@@ -2581,7 +2605,7 @@ PackLinuxElf64::canPack() + } + else { + char msg[50]; snprintf(msg, sizeof(msg), +- "bad relocation %#x DT_INIT_ARRAY[0]", ++ "bad relocation %#llx DT_INIT_ARRAY[0]", + r_info); + throwCantPack(msg); + } diff --git a/gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch b/gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch index 6988e65872..23f651b5eb 100644 --- a/gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch +++ b/gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch @@ -17,20 +17,16 @@ diff --git a/Rendering/FreeType/vtkFreeTypeTools.cxx b/Rendering/FreeType/vtkFre index c54289dc60..03b899c4da 100644 --- a/Rendering/FreeType/vtkFreeTypeTools.cxx +++ b/Rendering/FreeType/vtkFreeTypeTools.cxx -@@ -387,11 +387,8 @@ FTC_CMapCache* vtkFreeTypeTools::GetCMapCache() +@@ -378,8 +378,7 @@ FTC_CMapCache* vtkFreeTypeTools::GetCMapCache() } - + //---------------------------------------------------------------------------- -FT_CALLBACK_DEF(FT_Error) --vtkFreeTypeToolsFaceRequester(FTC_FaceID face_id, -- FT_Library lib, -- FT_Pointer request_data, -- FT_Face* face) +-vtkFreeTypeToolsFaceRequester( +static FT_Error vtkFreeTypeToolsFaceRequester( -+ FTC_FaceID face_id, FT_Library lib, FT_Pointer request_data, FT_Face* face) + FTC_FaceID face_id, FT_Library lib, FT_Pointer request_data, FT_Face* face) { #if VTK_FTFC_DEBUG_CD - printf("vtkFreeTypeToolsFaceRequester()\n"); --- +-- 2.30.1 diff --git a/gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch b/gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch new file mode 100644 index 0000000000..8c8ba93355 --- /dev/null +++ b/gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch @@ -0,0 +1,115 @@ +From a0541334a6394f8237a4393b7372693cd7e96f15 Mon Sep 17 00:00:00 2001 +From: Jouni Malinen <j@w1.fi> +Date: Sat, 13 Mar 2021 18:19:31 +0200 +Subject: ASN.1: Validate DigestAlgorithmIdentifier parameters + +The supported hash algorithms do not use AlgorithmIdentifier parameters. +However, there are implementations that include NULL parameters in +addition to ones that omit the parameters. Previous implementation did +not check the parameters value at all which supported both these cases, +but did not reject any other unexpected information. + +Use strict validation of digest algorithm parameters and reject any +unexpected value when validating a signature. This is needed to prevent +potential forging attacks. + +Signed-off-by: Jouni Malinen <j@w1.fi> +--- + src/tls/pkcs1.c | 21 +++++++++++++++++++++ + src/tls/x509v3.c | 20 ++++++++++++++++++++ + 2 files changed, 41 insertions(+) + +diff --git a/src/tls/pkcs1.c b/src/tls/pkcs1.c +index bbdb0d7..5761dfe 100644 +--- a/src/tls/pkcs1.c ++++ b/src/tls/pkcs1.c +@@ -244,6 +244,8 @@ int pkcs1_v15_sig_ver(struct crypto_public_key *pk, + os_free(decrypted); + return -1; + } ++ wpa_hexdump(MSG_MSGDUMP, "PKCS #1: DigestInfo", ++ hdr.payload, hdr.length); + + pos = hdr.payload; + end = pos + hdr.length; +@@ -265,6 +267,8 @@ int pkcs1_v15_sig_ver(struct crypto_public_key *pk, + os_free(decrypted); + return -1; + } ++ wpa_hexdump(MSG_MSGDUMP, "PKCS #1: DigestAlgorithmIdentifier", ++ hdr.payload, hdr.length); + da_end = hdr.payload + hdr.length; + + if (asn1_get_oid(hdr.payload, hdr.length, &oid, &next)) { +@@ -273,6 +277,23 @@ int pkcs1_v15_sig_ver(struct crypto_public_key *pk, + os_free(decrypted); + return -1; + } ++ wpa_hexdump(MSG_MSGDUMP, "PKCS #1: Digest algorithm parameters", ++ next, da_end - next); ++ ++ /* ++ * RFC 5754: The correct encoding for the SHA2 algorithms would be to ++ * omit the parameters, but there are implementation that encode these ++ * as a NULL element. Allow these two cases and reject anything else. ++ */ ++ if (da_end > next && ++ (asn1_get_next(next, da_end - next, &hdr) < 0 || ++ !asn1_is_null(&hdr) || ++ hdr.payload + hdr.length != da_end)) { ++ wpa_printf(MSG_DEBUG, ++ "PKCS #1: Unexpected digest algorithm parameters"); ++ os_free(decrypted); ++ return -1; ++ } + + if (!asn1_oid_equal(&oid, hash_alg)) { + char txt[100], txt2[100]; +diff --git a/src/tls/x509v3.c b/src/tls/x509v3.c +index a8944dd..df337ec 100644 +--- a/src/tls/x509v3.c ++++ b/src/tls/x509v3.c +@@ -1964,6 +1964,7 @@ int x509_check_signature(struct x509_certificate *issuer, + os_free(data); + return -1; + } ++ wpa_hexdump(MSG_MSGDUMP, "X509: DigestInfo", hdr.payload, hdr.length); + + pos = hdr.payload; + end = pos + hdr.length; +@@ -1985,6 +1986,8 @@ int x509_check_signature(struct x509_certificate *issuer, + os_free(data); + return -1; + } ++ wpa_hexdump(MSG_MSGDUMP, "X509: DigestAlgorithmIdentifier", ++ hdr.payload, hdr.length); + da_end = hdr.payload + hdr.length; + + if (asn1_get_oid(hdr.payload, hdr.length, &oid, &next)) { +@@ -1992,6 +1995,23 @@ int x509_check_signature(struct x509_certificate *issuer, + os_free(data); + return -1; + } ++ wpa_hexdump(MSG_MSGDUMP, "X509: Digest algorithm parameters", ++ next, da_end - next); ++ ++ /* ++ * RFC 5754: The correct encoding for the SHA2 algorithms would be to ++ * omit the parameters, but there are implementation that encode these ++ * as a NULL element. Allow these two cases and reject anything else. ++ */ ++ if (da_end > next && ++ (asn1_get_next(next, da_end - next, &hdr) < 0 || ++ !asn1_is_null(&hdr) || ++ hdr.payload + hdr.length != da_end)) { ++ wpa_printf(MSG_DEBUG, ++ "X509: Unexpected digest algorithm parameters"); ++ os_free(data); ++ return -1; ++ } + + if (x509_sha1_oid(&oid)) { + if (signature->oid.oid[6] != 5 /* sha-1WithRSAEncryption */) { +-- +cgit v0.12 + diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index 437000b7c0..689d03afc8 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -299,13 +299,6 @@ When present, Poppler is able to correctly render CJK and Cyrillic text.") (license (list license:bsd-3 license:gpl2)))) -(define-public poppler-qt4 - (package/inherit poppler - (name "poppler-qt4") - (inputs `(("qt-4" ,qt-4) - ,@(package-inputs poppler))) - (synopsis "Qt4 frontend for the Poppler PDF rendering library"))) - (define-public poppler-qt5 (package/inherit poppler (name "poppler-qt5") @@ -316,14 +309,14 @@ When present, Poppler is able to correctly render CJK and Cyrillic text.") (define-public python-poppler-qt5 (package (name "python-poppler-qt5") - (version "0.24.2") + (version "21.1.0") (source (origin (method url-fetch) (uri (pypi-uri "python-poppler-qt5" version)) (sha256 (base32 - "0l69llw1fzwz8y90q0qp9q5pifbrqjjbwii7di54dwghw5fc6w1r")))) + "0b82gm4i75q5v19kfbq0h4y0b2vcwr2213zkhxh6l0h45kdndmxd")))) (build-system python-build-system) (arguments `(;; There are no tests. The check phase just causes a rebuild. @@ -346,7 +339,7 @@ When present, Poppler is able to correctly render CJK and Cyrillic text.") (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(("python-sip" ,python-sip) + `(("python-sip" ,python-sip-4) ("python-pyqt" ,python-pyqt) ("poppler-qt5" ,poppler-qt5) ("qtbase" ,qtbase))) diff --git a/gnu/packages/perl-check.scm b/gnu/packages/perl-check.scm index b841e574eb..c64b985c4c 100644 --- a/gnu/packages/perl-check.scm +++ b/gnu/packages/perl-check.scm @@ -1096,14 +1096,14 @@ classes in its inheritance tree in one single call.") (define-public perl-test-output (package (name "perl-test-output") - (version "1.031") + (version "1.033") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/B/BD/BDFOY/" "Test-Output-" version ".tar.gz")) (sha256 (base32 - "193y1xjvgc1p9pdgdwps2127knvpz9wc1xh6gmr74y3ihmqz7f7q")))) + "0vjm62c7g3xxs3h4lba55dnpr4pg71yrhkdg5b9glxdh80klia7n")))) (build-system perl-build-system) (propagated-inputs `(("perl-capture-tiny" ,perl-capture-tiny) diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm index 4f2507286c..ba2a2af4be 100644 --- a/gnu/packages/perl.scm +++ b/gnu/packages/perl.scm @@ -2212,7 +2212,7 @@ Password Generator\".") (define-public perl-crypt-rijndael (package (name "perl-crypt-rijndael") - (version "1.15") + (version "1.16") (source (origin (method url-fetch) @@ -2220,7 +2220,7 @@ Password Generator\".") "mirror://cpan/authors/id/L/LE/LEONT/Crypt-Rijndael-" version ".tar.gz")) (sha256 - (base32 "0qs1b6ma4sj0ip5d8544fzgc1bbankc4qlmznp8hay8dk5arp650")))) + (base32 "0h2dr1bd15y0sipxsdh1k4hx5bccywn15haj0xpjmf0471g0hh35")))) (build-system perl-build-system) (home-page "https://metacpan.org/release/Crypt-Rijndael") (synopsis "Crypt::CBC compliant Rijndael encryption module") @@ -3770,15 +3770,14 @@ for CRC-CCITT, CRC-16 and CRC-32.") (define-public perl-digest-hmac (package (name "perl-digest-hmac") - (version "1.03") + (version "1.04") (source (origin (method url-fetch) - (uri (string-append "mirror://cpan/authors/id/G/GA/GAAS/" + (uri (string-append "mirror://cpan/authors/id/A/AR/ARODLAND/" "Digest-HMAC-" version ".tar.gz")) (sha256 - (base32 - "0naavabbm1c9zgn325ndy66da4insdw9l3mrxwxdfi7i7xnjrirv")))) + (base32 "1m4fn0w3hb4vn7k5kja508a5hjmcrm28zhdpjkbl8p17m9b83g6n")))) (build-system perl-build-system) (home-page "https://metacpan.org/release/Digest-HMAC") (synopsis "Keyed-Hashing for Message Authentication") @@ -6718,14 +6717,14 @@ Moose and is optimised for rapid startup.") (define-public perl-moose (package (name "perl-moose") - (version "2.2012") + (version "2.2015") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/E/ET/ETHER/" "Moose-" version ".tar.gz")) (sha256 (base32 - "0s9m2pskc8h1k94pbvx0lvf0xgv9xca349isbcsrqdqnkmxf9fs6")))) + "05gma3q3l15igqrqi8ax8v5cmmvy7s939q3xzs45l1rc7sfx6yd6")))) (build-system perl-build-system) (native-inputs `(("perl-cpan-meta-check" ,perl-cpan-meta-check) @@ -8153,16 +8152,16 @@ designed for the more complex job, such as @code{Params::Validate}") (define-public perl-params-util (package (name "perl-params-util") - (version "1.07") + (version "1.102") (source (origin (method url-fetch) (uri (string-append - "mirror://cpan/authors/id/A/AD/ADAMK/Params-Util-" + "mirror://cpan/authors/id/R/RE/REHSACK/Params-Util-" version ".tar.gz")) (sha256 (base32 - "0v67sx93yhn7xa0nh9mnbf8mixf54czk6wzrjsp6dzzr5hzyrw9h")))) + "00kl154zisf2zsl8yl6xa6yw54nhd9cja5d5fyigs96vhasb36s9")))) (build-system perl-build-system) (home-page "https://metacpan.org/release/Params-Util") (synopsis "Simple, compact and correct param-checking functions") @@ -8303,14 +8302,14 @@ file names.") (define-public perl-path-tiny (package (name "perl-path-tiny") - (version "0.108") + (version "0.118") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/D/DA/DAGOLDEN/" "Path-Tiny-" version ".tar.gz")) (sha256 (base32 - "1x9zf8r3cynf4vqlycyyspsr70v4zw6bk9bkgvfpvsxkw8mlhj9w")))) + "1zdhc3azw6wn21db3yyygs57vlqkx72ipyd8sa21m72c1y6qs4rj")))) (build-system perl-build-system) (arguments `(#:tests? #f)) ; Tests require additional test modules to be packaged @@ -8328,7 +8327,7 @@ with file paths.") (define-public perl-pdf-api2 (package (name "perl-pdf-api2") - (version "2.038") + (version "2.039") (source (origin (method url-fetch) (uri (string-append @@ -8336,7 +8335,7 @@ with file paths.") version ".tar.gz")) (sha256 (base32 - "02dxz798sx0ncdphjrfvfl2a3c1lkplyriyk4psq99q2kdsc8ivl")))) + "08x1anlvmxwym081flkrz7wr9q89y9wbq8ajqk72xsbzhhc479rn")))) (build-system perl-build-system) (native-inputs `(("perl-test-exception" ,perl-test-exception) @@ -11197,14 +11196,14 @@ files, using JSON::PP and/or CPAN::Meta::YAML.") (define-public perl-scalar-list-utils (package (name "perl-scalar-list-utils") - (version "1.53") + (version "1.56") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/P/PE/PEVANS/" "Scalar-List-Utils-" version ".tar.gz")) (sha256 - (base32 "16dfpnrcf5846j998rdd6gra16m9030rnz9fpsh1hfzvcsq8ch5x")))) + (base32 "0nxb29x7i2w6kjxq188n131b56bsqj1ykrxjcjp6sgpv81ym7f0m")))) (build-system perl-build-system) (home-page "https://metacpan.org/release/Scalar-List-Utils") (synopsis "Common Scalar and List utility subroutines") diff --git a/gnu/packages/photo.scm b/gnu/packages/photo.scm index 3dc3d7b3b6..210d69522f 100644 --- a/gnu/packages/photo.scm +++ b/gnu/packages/photo.scm @@ -240,14 +240,14 @@ data as produced by digital cameras.") (define-public libgphoto2 (package (name "libgphoto2") - (version "2.5.26") + (version "2.5.27") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gphoto/libgphoto/" version "/libgphoto2-" version ".tar.bz2")) (sha256 (base32 - "1m5wxap3x9z6x8s2gj3sw9lqwlmbgz00dv6z3h3qk15prfizwh3p")))) + "1ms06b3dj1p33aypcb16gg5pn7fylbylsk9cnnqa0j29qiw59f7q")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs @@ -271,14 +271,14 @@ from digital cameras.") (define-public gphoto2 (package (name "gphoto2") - (version "2.5.26") + (version "2.5.27") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gphoto/gphoto/" version "/gphoto2-" version ".tar.bz2")) (sha256 (base32 - "0bxbcn31xalsvjp8fra324hf2105y3ps7zlyfz11v71j0lxj2lvn")))) + "0f4d3q381jnnkcqkb2dj1k709skp65qihl5xm80zandvl69lw19h")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -355,15 +355,16 @@ and a wide variety of other metadata.") (define-public libpano13 (package (name "libpano13") - (version "2.9.19") + (version "2.9.20_rc3") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/panotools/libpano13/" - "libpano13-" version "/" - "libpano13-" version ".tar.gz")) + "libpano13-" (first + (string-split version #\_)) + "/libpano13-" version ".tar.gz")) (sha256 (base32 - "1a4m3plmfcrrplqs9zfzhc5apibn10m5sajpizm1sd3q74w5fwq3")))) + "12cv4886l1czfjwy7k6ipgf3zjksgwhdjzr2s9fdg33vqcv2hlrv")))) (build-system cmake-build-system) (inputs `(("libjpeg" ,libjpeg-turbo) diff --git a/gnu/packages/popt.scm b/gnu/packages/popt.scm index 11d2b1827d..1c325e0c3d 100644 --- a/gnu/packages/popt.scm +++ b/gnu/packages/popt.scm @@ -91,7 +91,7 @@ similar to getopt(3), it contains a number of enhancements, including: - popt allows users to alias command line arguments; - - popt provides convience functions for parsing strings into argv[] style + - popt provides convenience functions for parsing strings into argv[] style arrays.") (license x11))) diff --git a/gnu/packages/pretty-print.scm b/gnu/packages/pretty-print.scm index af02fd91a9..4662a1e717 100644 --- a/gnu/packages/pretty-print.scm +++ b/gnu/packages/pretty-print.scm @@ -189,19 +189,6 @@ to @code{IOStreams}.") ;; The library is bsd-2, but documentation and tests include other licenses. (license (list bsd-2 bsd-3 psfl)))) -(define-public fmt-6 - (package - (inherit fmt) - (name "fmt") - (version "6.2.1") - (source - (origin - (method url-fetch) - (uri (string-append "https://github.com/fmtlib/fmt/releases/download/" - version "/fmt-" version ".zip")) - (sha256 - (base32 "06l8g59frbsbwj15kg6x2bbn6p8yidh6wzsigdhbdjncvm1agzll")))))) - (define-public source-highlight (package (name "source-highlight") diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm index 95d0b3653d..9a820ff29b 100644 --- a/gnu/packages/python-build.scm +++ b/gnu/packages/python-build.scm @@ -4,6 +4,8 @@ ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org> ;;; Copyright © 2018, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2021 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -71,14 +73,13 @@ installed with a newer @code{pip} or with wheel's own command line utility.") (define-public python-toml (package (name "python-toml") - (version "0.10.1") + (version "0.10.2") (source (origin (method url-fetch) (uri (pypi-uri "toml" version)) (sha256 - (base32 - "03wbqm5cn685cwx2664hjdpz370njl7lf0yal8s0dkp5w4mn2swj")))) + (base32 "13z6rff86bzdpl094x0vmfvls779931xj90dlbs9kpfm138s3gdk")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;no tests suite in release @@ -89,6 +90,23 @@ installed with a newer @code{pip} or with wheel's own command line utility.") Language (TOML) configuration files.") (license license:expat))) +(define-public python-pytoml + (package + (name "python-pytoml") + (version "0.1.21") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pytoml" version)) + (sha256 + (base32 + "1rv1byiw82k7mj6aprcrqi2vdabs801y97xhfnrz7kxds34ggv4f")))) + (build-system python-build-system) + (home-page "https://github.com/avakar/pytoml") + (synopsis "Parser for TOML") + (description "This package provides a Python parser for TOML-0.4.0.") + (license license:expat))) + (define-public python-pep517-bootstrap (hidden-package (package diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index f7342c6436..da6d088f25 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -10,6 +10,9 @@ ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org> ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> +;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot> +;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -372,6 +375,39 @@ provides a shortcut to testing all code and documentation for a given sub-package.") (license license:bsd-3))) +(define-public python-pytest-helpers-namespace + (package + (name "python-pytest-helpers-namespace") + (version "2021.3.24") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pytest-helpers-namespace" version)) + (sha256 + (base32 + "0pyj2d45zagmzlajzqdnkw5yz8k49pkihbydsqkzm413qnkzb38q")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Make the installed plugin discoverable by Pytest. + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv")))))) + (native-inputs + `(("python-pytest" ,python-pytest-6) + ("python-setuptools" ,python-setuptools) ; needs setuptools >= 50.3.2 + ("python-setuptools-scm" ,python-setuptools-scm) + ("python-setuptools-declarative-requirements" + ,python-setuptools-declarative-requirements))) + (home-page "https://github.com/saltstack/pytest-helpers-namespace") + (synopsis "Pytest Helpers Namespace Plugin") + (description "Pytest Helpers Namespace Plugin provides a helpers pytest +namespace which can be used to register helper functions without requiring +someone to import them in their actual tests to use them.") + (license license:asl2.0))) + (define-public python-pytest-openfiles (package (name "python-pytest-openfiles") @@ -627,14 +663,14 @@ friendly library for concurrency and async I/O in Python.") (define-public python-pytest-flake8 (package (name "python-pytest-flake8") - (version "1.0.6") + (version "1.0.7") (source (origin (method url-fetch) (uri (pypi-uri "pytest-flake8" version)) (sha256 (base32 - "09vhn7r77s1yiqnlwfvh5585f904zpyd6620a90dpccfr1cbp0hv")))) + "0syx68xk5ss3hgp3nr2y122w0fgkzr5936ghsqrkymh3m5hrf9gh")))) (build-system python-build-system) (propagated-inputs `(("python-flake8" ,python-flake8))) @@ -1235,6 +1271,28 @@ convenient wrapper above tools such as Pyflakes, pydocstyle, pycodestyle and McCabe, among others.") (license license:lgpl3+))) +(define-public python-pyannotate + (package + (name "python-pyannotate") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyannotate" version)) + (sha256 + (base32 + "16bm0mf7wxvy0lgmcs1p8n1ji8pnvj1jvj8zk3am70dkp825iv84")))) + (build-system python-build-system) + (propagated-inputs + `(("python-mypy-extensions" ,python-mypy-extensions) + ("python-six" ,python-six))) + (home-page + "https://github.com/dropbox/pyannotate") + (synopsis "Auto-generate PEP-484 annotations") + (description "This package, PyAnnotate, is used to auto-generate PEP-484 +annotations.") + (license license:asl2.0))) + (define-public python-eradicate (package (name "python-eradicate") @@ -1339,3 +1397,26 @@ help in debugging failures and optimizing the scheduler to improve speed.") (description "A pytest plugin for Sanic. It helps you to test your code asynchronously.") (license license:expat))) + +(define-public python-allpairspy + (package + (name "python-allpairspy") + (version "2.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "allpairspy" version)) + (sha256 + (base32 "1c987h13dly9919d15w3h747rgn50ilnv7dginhlprxbj564hn4k")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/thombashi/allpairspy") + (synopsis "Pairwise test combinations generator") + (description + "This is a Python library for test combinations generator. The generator +allows one to create a set of tests using @emph{pairwise combinations} method, +reducing a number of combinations of variables into a lesser set that covers +most situations.") + (license license:expat))) diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm index 2065e6e38f..30062f43c5 100644 --- a/gnu/packages/python-compression.scm +++ b/gnu/packages/python-compression.scm @@ -6,6 +6,7 @@ ;;; Copyright © 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot> ;;; ;;; This file is part of GNU Guix. ;;; @@ -30,14 +31,141 @@ #:use-module (guix build-system gnu) #:use-module (guix build-system python) #:use-module (gnu packages) + #:use-module (gnu packages libffi) #:use-module (gnu packages compression) #:use-module (gnu packages check) #:use-module (gnu packages maths) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) + #:use-module (gnu packages python-check) + #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-xyz) #:use-module (gnu packages sphinx)) +(define-public python-multivolumefile + (package + (name "python-multivolumefile") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "multivolumefile" version)) + (sha256 + (base32 + "0j46wab4b09s3favjzp3zs1cn2sn8pr7qyngs5wn31hpqqxbbz76")))) + (build-system python-build-system) + (native-inputs + `(("python-pep517" ,python-pep517) + ("python-setuptools" ,python-setuptools) + ("python-setuptools-scm" ,python-setuptools-scm/next) + ("python-coverage" ,python-coverage) + ("python-coveralls" ,python-coveralls) + ("python-pyannotate" ,python-pyannotate) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://github.com/miurahr/multivolume") + (synopsis "Treat multiple files as one") + (description "MultiVolumefile is a Python library that provides a +file-object abstraction, making it possible to use multiple files as if they +were a single file.") + (license license:lgpl2.1+))) + +(define-public python-bcj-cffi + (package + (name "python-bcj-cffi") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bcj-cffi" version)) + (sha256 + (base32 + "1jcczrb8zgg6w7v76w1wpz3nw75fghk3xwxkn09ll7kck7sdf68d")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cffi" ,python-cffi) + ("python-toml" ,python-toml) + ("python-setuptools-scm" ,python-setuptools-scm/next))) + (native-inputs + `(("python-setuptools" ,python-setuptools) + ("python-coverage" ,python-coverage) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://github.com/miurahr/bcj-cffi") + (synopsis "Branch / Call /Jump CFFI library in Python") + (description "This package provides an implementation of the Branch / Call / +Jump conversion filter by CFFI for Python.") + (license license:lgpl2.1+))) + +(define-public python-ppmd-cffi + (package + (name "python-ppmd-cffi") + (version "0.3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ppmd-cffi" version)) + (sha256 + (base32 + "01wcd9l6pp6hivdmd275qh9dhcwficjqfl67hxix5n07vvq7jzz0")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cffi" ,python-cffi))) + (native-inputs + `(("python-setuptools" ,python-setuptools) + ("python-setuptools-scm" ,python-setuptools-scm/next) + ("python-pep517" ,python-pep517) + ("python-coverage" ,python-coverage) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://github.com/miurahr/ppmd") + (synopsis "Prediction by Partial Matching compression library") + (description "PPMd is a compression algorithm library using the Prediction +by Partial Matching statistical technique. It is used in RAR and 7-Zip as one of +several possible methods.") + (license license:lgpl2.1+))) + +(define-public python-py7zr + (package + (name "python-py7zr") + (version "0.14.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "py7zr" version)) + (sha256 + (base32 + "1zmgp7yax328fj8yj8pj4l7yh78hp727j6wk12vfi6nmi82wl32i")))) + (build-system python-build-system) + (propagated-inputs + `(("python-bcj-cffi" ,python-bcj-cffi) + ("python-multivolumefile" ,python-multivolumefile) + ("python-ppmd-cffi" ,python-ppmd-cffi) + ("python-pycryptodome" ,python-pycryptodome) + ("python-pyzstd" ,python-pyzstd) + ("python-texttable" ,python-texttable) + ("python-zstandard" ,python-zstandard))) + (native-inputs + `(("python-setuptools" ,python-setuptools) + ("python-setuptools-scm" ,python-setuptools-scm/next) + ("python-coverage" ,python-coverage) + ("python-coveralls" ,python-coveralls) + ("python-libarchive-c" ,python-libarchive-c) + ("python-py-cpuinfo" ,python-py-cpuinfo) + ("python-pyannotate" ,python-pyannotate) + ("python-pytest" ,python-pytest) + ("python-pytest-benchmark" ,python-pytest-benchmark) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-remotedata" ,python-pytest-remotedata) + ("python-pytest-timeout" ,python-pytest-timeout))) + (home-page "https://github.com/miurahr/py7zr") + (synopsis "7-zip in Python") + (description "This package provides py7zr, which implements 7-zip +archive compression, decompression, encryption and decryption in +Python.") + (license license:lgpl2.1+))) + (define-public python-lzo (package (name "python-lzo") @@ -288,13 +416,13 @@ wrapper. It provides a backport of the @code{Path} object.") (define-public python-zstandard (package (name "python-zstandard") - (version "0.13.0") + (version "0.15.2") (source (origin (method url-fetch) (uri (pypi-uri "zstandard" version)) (sha256 - (base32 "0q9msi00s93iqm8vzd839r7yc51gz54z90h5bckqyjdxa6vxijz5")))) + (base32 "0by9z7nxnkzhmza075q6q91rs8lnpf91129k8ppv7kymbwshipjj")))) (build-system python-build-system) (native-inputs `(("python-hypothesis" ,python-hypothesis))) @@ -304,3 +432,21 @@ wrapper. It provides a backport of the @code{Path} object.") the Zstandard compression library. A C extension and CFFI interface are provided.") (license license:bsd-3))) + +(define-public python-pyzstd + (package + (name "python-pyzstd") + (version "0.14.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyzstd" version)) + (sha256 + (base32 + "1d3mngs45w2p490vrq5ymd2wz4lp15phmks1ilcx4k7amgibml3d")))) + (build-system python-build-system) + (home-page "https://github.com/animalize/pyzstd") + (synopsis "Zstandard bindings for Python") + (description "This package provides Python bindings to the Zstandard (zstd) +compression library. The API is similar to Python's bz2/lzma/zlib module.") + (license license:bsd-3))) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 4e06d5ed85..535aff427a 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2016, 2017 Danny Milosavljevic <dannym+a@scratchpost.org> ;;; Copyright © 2013, 2014, 2015, 2016, 2020 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2017, 2019, 2020 Marius Bakke <mbakke@fastmail.com> -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016, 2017, 2020 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2016, 2017 Nikita <nikita@n0.is> @@ -40,6 +40,7 @@ ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Konrad Hinsen <konrad.hinsen@fastmail.net> ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> +;;; Copyright © 2021 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; ;;; This file is part of GNU Guix. ;;; @@ -778,29 +779,26 @@ object graph to and from JSON.") (define-public python-mechanicalsoup (package (name "python-mechanicalsoup") - (version "0.11.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (pypi-uri "MechanicalSoup" version)) (sha256 - (base32 "0k59wwk75q7nz6i6gynvzhagy02ql0bv7py3qqcwgjw7607yq4i7")))) + (base32 "01sddjxy3rznh63hnl5lbv1hhk6xyiviwmkiw4x7v4ap35fb3lrp")))) (build-system python-build-system) - (arguments - ;; TODO: Enable tests when python-flake8@3.5 hits master. - `(#:tests? #f)) (propagated-inputs `(("python-beautifulsoup4" ,python-beautifulsoup4) ("python-lxml" ,python-lxml) ("python-requests" ,python-requests) ("python-six" ,python-six))) - ;; (native-inputs - ;; ;; For tests. - ;; `(("python-pytest-flake8" ,python-pytest-flake8) - ;; ("python-pytest-httpbin" ,python-pytest-httpbin) - ;; ("python-pytest-mock" ,python-pytest-mock) - ;; ("python-pytest-runner" ,python-pytest-runner) - ;; ("python-requests-mock" ,python-requests-mock))) + (native-inputs + `(("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-flake8" ,python-pytest-flake8) + ("python-pytest-httpbin" ,python-pytest-httpbin) + ("python-pytest-mock" ,python-pytest-mock) + ("python-pytest-runner" ,python-pytest-runner) + ("python-requests-mock" ,python-requests-mock))) (home-page "https://mechanicalsoup.readthedocs.io/") (synopsis "Python library for automating website interaction") (description @@ -1085,7 +1083,9 @@ storage.") (build-system python-build-system) (propagated-inputs `(("python-six" ,python-six) - ("python-webencodings" ,python-webencodings))) + ("python-webencodings" ,python-webencodings) + ;; Required by Calibre 5. + ("python-chardet" ,python-chardet))) (arguments `(#:test-target "check")) (home-page @@ -1668,14 +1668,14 @@ connection to each user.") (define-public python-tornado-6 (package (name "python-tornado") - (version "6.0.4") + (version "6.1") (source (origin (method url-fetch) (uri (pypi-uri "tornado" version)) (sha256 (base32 - "1p5n7sw4580pkybywg93p8ddqdj9lhhy72rzswfa801vlidx9qhg")))) + "14cpzdv6p6qvk6vn02krdh5rcfdi174ifdbr5s6lcnymgcfyiiik")))) (build-system python-build-system) (arguments '(#:phases @@ -1729,26 +1729,26 @@ web framework, either via the basic or digest authentication schemes.") (define-public python-terminado (package (name "python-terminado") - (version "0.8.1") + (version "0.9.4") (source (origin (method url-fetch) (uri (pypi-uri "terminado" version)) (sha256 (base32 - "0yh69k6579g848rmjyllb5h75pkvgcy27r1l3yzgkf33wnnzkasm")))) + "1glqyw97rddyzvisz8rihsn3x2nrm5xbyq82nzp3123pqbxvqzcs")))) (build-system python-build-system) (propagated-inputs - `(("python-tornado" ,python-tornado) + `(("python-tornado" ,python-tornado-6) ("python-ptyprocess" ,python-ptyprocess))) (native-inputs - `(("python-nose" ,python-nose))) + `(("python-pytest" ,python-pytest))) (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ (invoke "nosetests") #t))))) - (home-page "https://github.com/takluyver/terminado") + (lambda _ (invoke "pytest" "-vv")))))) + (home-page "https://github.com/jupyter/terminado") (synopsis "Terminals served to term.js using Tornado websockets") (description "This package provides a Tornado websocket backend for the term.js Javascript terminal emulator library.") @@ -2503,6 +2503,53 @@ than Python’s urllib2 library.") (define-public python2-requests (package-with-python2 python-requests)) +(define-public python-requests-unixsocket + (package + (name "python-requests-unixsocket") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "requests-unixsocket" version)) + (sha256 + (base32 + "1sn12y4fw1qki5gxy9wg45gmdrxhrndwfndfjxhpiky3mwh1lp4y")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "test-requirements.txt" + (("(.*)==(.*)" _ name) (string-append name "\n"))))) + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv")))))) + (propagated-inputs + `(("python-pbr" ,python-pbr) + ("python-requests" ,python-requests) + ("python-urllib3" ,python-urllib3))) + (native-inputs + `(("python-apipkg" ,python-apipkg) + ("python-appdirs" ,python-appdirs) + ("python-execnet" ,python-execnet) + ("python-packaging" ,python-packaging) + ("python-pep8" ,python-pep8) + ("python-py" ,python-py) + ("python-pyparsing" ,python-pyparsing) + ("python-pytest" ,python-pytest) + ("python-pytest-cache" ,python-pytest-cache) + ("python-pytest-pep8" ,python-pytest-pep8) + ("python-six" ,python-six) + ("python-waitress" ,python-waitress))) + (home-page "https://github.com/msabramo/requests-unixsocket") + (synopsis "Talk HTTP via a UNIX domain socket") + (description + "This Python package lets you use the @code{requests} library to talk +HTTP via a UNIX domain socket.") + (license license:asl2.0))) + (define-public python-requests_ntlm (package (name "python-requests_ntlm") @@ -4489,18 +4536,47 @@ library to create slugs from unicode strings while keeping it DRY.") (version "1.1.0") (source (origin - (method url-fetch) - (uri (pypi-uri "tinycss2" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/Kozea/tinycss2") + (commit (string-append "v" version)) + (recursive? #true))) + (file-name (git-file-name name version)) (sha256 - (base32 "12p16k8x8ig51gpfcwz3k3kxpxrwwkn41a1avdgvh3nn8hqarp7v")))) + (base32 "0zyc48vbmczpqj7f3f0d7zb3bz29fyj50dg0m6bbwbr5i88kq3sq")))) (build-system python-build-system) (arguments - ;; Test data is missing from the PyPI archive, and the build system is - ;; based on Flit, which wants an unmaintained and unpackaged - ;; python-pytoml dependency. - `(#:tests? #f)) + `(#:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + ;; A ZIP archive should be generated, but it fails with "ZIP does + ;; not support timestamps before 1980". Luckily, + ;; SOURCE_DATE_EPOCH is respected, which we set to some time in + ;; 1980. + (setenv "SOURCE_DATE_EPOCH" "315532800") + (invoke "flit" "build"))) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (let ((out (assoc-ref outputs "out"))) + (for-each (lambda (wheel) + (format #true wheel) + (invoke "python" "-m" "pip" "install" + wheel (string-append "--prefix=" out))) + (find-files "dist" "\\.whl$"))))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv")))))) (propagated-inputs `(("python-webencodings" ,python-webencodings))) + (native-inputs + `(("python-flit" ,python-flit) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-flake8" ,python-pytest-flake8) + ("python-pytest-isort" ,python-pytest-isort))) (home-page "https://tinycss2.readthedocs.io/") (synopsis "Low-level CSS parser for Python") (description "@code{tinycss2} can parse strings, return Python objects diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 92ac335272..9da8e47755 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -39,11 +39,11 @@ ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au> ;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> -;;; Copyright © 2017, 2020 Roel Janssen <roel@gnu.org> +;;; Copyright © 2017, 2020, 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018, 2019 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com> -;;; Copyright © 2017, 2019 Brendan Tildesley <mail@brendan.scot> +;;; Copyright © 2017, 2019, 2021 Brendan Tildesley <mail@brendan.scot> ;;; Copyright © 2018 Ethan R. Jones <ethanrjones97@gmail.com ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com> ;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com> @@ -60,7 +60,7 @@ ;;; Copyright © 2019, 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2019 Sam <smbaines8@gmail.com> ;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us> -;;; Copyright © 2019, 2020 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2019, 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2019, 2020 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2019, 2020 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com> @@ -151,6 +151,7 @@ #:use-module (gnu packages icu4c) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) + #:use-module (gnu packages jupyter) #:use-module (gnu packages kerberos) #:use-module (gnu packages libevent) #:use-module (gnu packages libffi) @@ -1257,6 +1258,34 @@ Python 3 support.") license:asl2.0 ; packaging is dual ASL2/BSD-2 license:bsd-2)))) +(define-public python-setuptools-declarative-requirements + (package + (name "python-setuptools-declarative-requirements") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri + "setuptools-declarative-requirements" + version)) + (sha256 + (base32 + "1l8zmcnp9h8sp8hsw7b81djaa1a9yig0y7i4phh5pihqz1gdn7yi")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-toml" ,python-toml) + ("python-wheel" ,python-wheel))) + (home-page + "https://github.com/s0undt3ch/setuptools-declarative-requirements") + (synopsis "File support for setuptools declarative setup.cfg") + (description + "This package provides file support for setuptools declarative +@code{setup.cfg}.") + (license license:asl2.0))) + ;; The setuptools provided by Python 3.7.4 is too new for Tensorflow. (define-public python-setuptools-for-tensorflow (hidden-package @@ -1965,12 +1994,34 @@ human-friendly syntax.") (build-system python-build-system) (home-page "https://github.com/scour-project/scour") (synopsis "Scour is an SVG optimizer/cleaner written in Python") - (description "The goal of Scour is to output a file that renderes + (description "The goal of Scour is to output a file that renders identically at a fraction of the size by removing a lot of redundant information created by most SVG editors. Optimization options are typically lossless but can be tweaked for more aggressive cleaning.") (license license:asl2.0))) +(define-public python-mappy + (package + (name "python-mappy") + (version "2.18") + (source (origin + (method url-fetch) + (uri (pypi-uri "mappy" version)) + (sha256 + (base32 + "1a05p7rkmxa6qhm108na8flzj2v45jab06drk59kzk1ip2sgvzqq")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/lh3/minimap2") + (synopsis "Python binding for minimap2") + (description "This package provides a convenient interface to minimap2, +a fast and accurate C program to align genomic and transcribe nucleotide +sequences.") + (license license:expat))) + (define-public python-mechanize (package (name "python-mechanize") @@ -2994,6 +3045,25 @@ cutting and pasting that code over and over.") (define-public python2-kitchen (package-with-python2 python-kitchen)) +(define-public python-roman + (package + (name "python-roman") + (version "3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "roman" version)) + (sha256 + (base32 + "0gyp2bmw47jgpm8j64gydzqq838bgxz5gh6cm57lxlr7p26sqiic")))) + (build-system python-build-system) + (home-page "https://github.com/zopefoundation/roman") + (synopsis "Integer to Roman numerals converter") + (description + "This package provides a small helper library to convert Arabic Numbers +to Roman Numerals.") + (license license:psfl))) + (define-public python-unidecode (package (name "python-unidecode") @@ -3694,6 +3764,25 @@ text styles of documentation.") (base32 "1zmhnswy0wxfn0xprs9aqsvx2c3kmzfn2wx14q8cv3vpkxdamj4q"))))))) +(define-public python-pygments-github-lexers + (package + (name "python-pygments-github-lexers") + (version "0.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pygments-github-lexers" version)) + (sha256 + (base32 + "0cz14clcc9z4pn79ll8hp3xzgsrfjscak5zfsvlgrz6ngkkmgjma")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pygments" ,python-pygments))) + (home-page "https://github.com/liluo/pygments-github-lexers") + (synopsis "Pygments Github custom lexers") + (description "This package installs Github custom lexers to Pygments.") + (license license:bsd-3))) + (define-public python-bump2version (package (name "python-bump2version") @@ -4448,14 +4537,13 @@ provides additional functionality on the produced Mallard documents.") (define-public python-cython (package (name "python-cython") - (version "0.29.21") + (version "0.29.22") (source (origin (method url-fetch) (uri (pypi-uri "Cython" version)) (sha256 - (base32 - "1bcwpra7c6k30yvic3sw2v3rq2dr40ypc4zqif6kr52mpn4wnyp5")))) + (base32 "01jl3544qwsi8lp6anbl55566xqkjd53x452i7m6gnfilv3q6syz")))) (build-system python-build-system) ;; we need the full python package and not just the python-wrapper ;; because we need libpython3.3m.so @@ -5396,14 +5484,6 @@ toolkits.") (description (package-description python-matplotlib)) (license (package-license python-matplotlib)))) -(define-public python2-matplotlib-documentation - (let ((parent (package-with-python2 python-matplotlib-documentation))) - (package - (inherit parent) - (native-inputs - (alist-delete "python-sphinx-copybutton" - (package-native-inputs parent)))))) - (define-public python-matplotlib-venn (package (name "python-matplotlib-venn") @@ -5559,14 +5639,14 @@ a simple netcat replacement with chaining support.") (define-public python-pycodestyle (package (name "python-pycodestyle") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) (uri (pypi-uri "pycodestyle" version)) (sha256 (base32 - "0bhr6ia0hmgx3nhgibc9pmkzhlh1zcqk707i5fbxgs702ll7v2n5")))) + "1vqwmzmjdv331kmfq3q9j3as2x7r2r49lf83r9w4147pdg8c32f3")))) (build-system python-build-system) (arguments `(#:phases @@ -5808,13 +5888,13 @@ the OleFileIO module from PIL, the Python Image Library.") (define-public python-pikepdf (package (name "python-pikepdf") - (version "2.9.1") + (version "2.10.0") (source (origin (method url-fetch) (uri (pypi-uri "pikepdf" version)) (sha256 - (base32 "1n53fhdgnq9yxvm2m039vl8l2kg3fkln3pm0wv4rzj0gvpq9rhcr")))) + (base32 "09wfj1hjvj3r9gv7ywrqd7h3d0bz64bvils8sm3ghj90jhalb03s")))) (build-system python-build-system) (arguments `(#:tests? #false)) ;require python-xmp-toolkit @@ -7065,13 +7145,6 @@ CLI scripts: @end enumerate") (license license:bsd-3))) -(define-public python2-ipyparallel - (let ((ipyparallel (package-with-python2 python-ipyparallel))) - (package/inherit ipyparallel - (propagated-inputs - `(("python2-futures" ,python2-futures) - ,@(package-propagated-inputs ipyparallel)))))) - (define-public python-ipython-cluster-helper (package (name "python-ipython-cluster-helper") @@ -7164,14 +7237,14 @@ without using the configuration machinery.") (define-public python-jupyter-core (package (name "python-jupyter-core") - (version "4.4.0") + (version "4.7.1") (source (origin (method url-fetch) (uri (string-append (pypi-uri "jupyter_core" version))) (sha256 (base32 - "1dy083rarba8prn9f9srxq3c7n7vyql02ycrqq306c40lr57aw5s")))) + "1d12j5hkff0xiax87pnhmzbsph3jqqzhz16h8xld7z2y4armq0kr")))) (build-system python-build-system) ;; FIXME: not sure how to run the tests (arguments `(#:tests? #f)) @@ -7183,27 +7256,23 @@ without using the configuration machinery.") "Jupyter core is the base package on which Jupyter projects rely.") (license license:bsd-3))) -(define-public python2-jupyter-core - (package-with-python2 python-jupyter-core)) - (define-public python-jupyter-client (package (name "python-jupyter-client") - (version "5.2.4") + (version "6.1.12") (source (origin (method url-fetch) (uri (pypi-uri "jupyter_client" version)) (sha256 (base32 - "0l9mh7ccrpl3lppym3dnky8n1nk7xarzzdcxf4q2s7aw203cpydm")))) + "10p7fcgvv9hvz9zical9wk68ks5ssak2ykbzx65wm1k1hk8a3g64")))) (build-system python-build-system) ;; Tests fail because of missing native python kernel which I assume is ;; provided by the ipython package, which we cannot use because it would ;; cause a dependency cycle. (arguments `(#:tests? #f - #:phases (modify-phases %standard-phases (add-after 'unpack 'set-tool-file-names (lambda* (#:key inputs #:allow-other-keys) @@ -7215,9 +7284,13 @@ without using the configuration machinery.") (inputs `(("iproute" ,iproute))) (propagated-inputs - `(("python-pyzmq" ,python-pyzmq) - ("python-traitlets" ,python-traitlets) - ("python-jupyter-core" ,python-jupyter-core))) + `(("python-dateutil" ,python-dateutil) + ("python-jupyter-core" ,python-jupyter-core) + ("python-pyzmq" ,python-pyzmq) + ("python-tornado" ,python-tornado-6) + ("python-traitlets" ,python-traitlets))) + (native-inputs + `(("python-pytest" ,python-pytest))) (home-page "https://jupyter.org/") (synopsis "Jupyter protocol implementation and client libraries") (description @@ -7233,13 +7306,13 @@ installing @code{kernelspec}s for use with Jupyter frontends.") (define-public python-ipykernel (package (name "python-ipykernel") - (version "5.1.3") + (version "5.5.3") (source (origin (method url-fetch) (uri (pypi-uri "ipykernel" version)) (sha256 - (base32 "1a08y677lpn80qzvv7z0smgggmr5m5ayf0bs6vds47xpxl9sss5k")))) + (base32 "02f55cjkp5q64x7ikjxznbxwjpkdmfy237b9kg7dk1pxmzvy90m6")))) (build-system python-build-system) (arguments `(#:phases @@ -7271,38 +7344,6 @@ installing @code{kernelspec}s for use with Jupyter frontends.") (synopsis "IPython Kernel for Jupyter") (description "This package provides the IPython kernel for Jupyter.") - (properties `((python2-variant . ,(delay python2-ipykernel)))) - (license license:bsd-3))) - -;; Version 5.x and above no longer support Python 2. -(define-public python2-ipykernel - (package - (name "python2-ipykernel") - (version "4.10.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "ipykernel" version)) - (sha256 - (base32 "1yzmdiy1djsszqp54jzd8ym8h4hpl67zjq83j2kxbkp0rwmlpdzf")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2)) - (propagated-inputs - `(("python2-ipython" ,python2-ipython) - ;; imported at runtime during connect - ("python2-jupyter-client" ,python2-jupyter-client) - ("python2-tornado" ,python2-tornado) - ("python2-traitlets" ,python2-traitlets))) - (native-inputs - `(("python2-mock" ,python2-mock) - ("python2-nose" ,python2-nose) - ("python2-pytest" ,python2-pytest) - ("python2-pytest-cov" ,python2-pytest-cov))) - (home-page "https://ipython.org") - (synopsis "IPython Kernel for Jupyter") - (description - "This package provides the IPython kernel for Jupyter.") (license license:bsd-3))) (define-public python-pari-jupyter @@ -7333,14 +7374,14 @@ installing @code{kernelspec}s for use with Jupyter frontends.") (define-public python-backcall (package (name "python-backcall") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) (uri (pypi-uri "backcall" version)) (sha256 (base32 - "1r01dqch3f8fdj3n6fviw8hxqrs6w5v0qw4izmvqzry1w9dxiv1q")))) + "07jy4562lvnhkk6kfr3cphmizy88anlhmbwb8kdzlz2ypqkvzgaw")))) (build-system python-build-system) (home-page "https://github.com/takluyver/backcall/") (synopsis "Specifications for callback functions passed in to an API") @@ -7584,24 +7625,69 @@ computing.") (define-public python-urwid (package (name "python-urwid") - (version "2.1.0") + (version "2.1.2") (source (origin (method url-fetch) (uri (pypi-uri "urwid" version)) (sha256 (base32 - "11ndnhxd41m13darf5s0c6bafdpkzq1l6mfb04wbzdmyc1hg75h8")))) + "1bky2bra6673xx8jy0826znw6cmxs89wcwwzda8d025j3jffx2sq")))) (build-system python-build-system) (home-page "http://urwid.org") (synopsis "Console user interface library for Python") (description "Urwid is a curses-based UI/widget library for Python. It includes many features useful for text console applications.") + (properties `((python2-variant . ,(delay python2-urwid)))) (license license:lgpl2.1+))) (define-public python2-urwid - (package-with-python2 python-urwid)) + (let ((base (package-with-python2 + (strip-python2-variant python-urwid)))) + (package/inherit base + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "urwid" version)) + (sha256 + (base32 + "11ndnhxd41m13darf5s0c6bafdpkzq1l6mfb04wbzdmyc1hg75h8"))))))) + +(define-public python-urwid-readline + (package + (name "python-urwid-readline") + (version "0.12") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rr-/urwid_readline") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0sq5qgxj7gcfww3ww7idr87isnmp0hi36n241b3q395x1zafdv22")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest")) + #t))))) + (propagated-inputs + `(("python-urwid" ,python-urwid))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/rr-/urwid_readline") + (synopsis "Text input widget for urwid that supports readline shortcuts") + (description + "This package provides a textbox edit widget for @code{python-urwid} that +supports @code{readline} shortcuts.") + (license license:expat))) (define-public python-urwidtrees (package @@ -7747,14 +7833,14 @@ the GObject Introspection bindings to libnotify for non-GTK applications.") (define-public python-beautifulsoup4 (package (name "python-beautifulsoup4") - (version "4.9.1") + (version "4.9.3") (source (origin (method url-fetch) (uri (pypi-uri "beautifulsoup4" version)) (sha256 (base32 - "1mvzlw3pzbhsvl3z8784s5h7iiflm2hggiy1fxyrrxwnbc8lvk3k")))) + "09gbd49mwz86k572r1231x2rdp82p42zlnw0bz9b9mfi58r9wwl4")))) (build-system python-build-system) (arguments `(#:phases @@ -7790,14 +7876,14 @@ converts incoming documents to Unicode and outgoing documents to UTF-8.") (define-public python-soupsieve (package (name "python-soupsieve") - (version "2.0.1") + (version "2.2.1") (source (origin (method url-fetch) (uri (pypi-uri "soupsieve" version)) (sha256 (base32 - "0ch2rhvsbwfpvzm4kzy81rclbzr533yv83hzg1gx55byfa0w37d5")))) + "1k70gpn2d3vgdyxbdy536dgm4kchcraxz6lmgsfg3324iy2789q5")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;;XXX: 2 tests fail currently despite claming they were to be @@ -8426,13 +8512,13 @@ applications.") (define-public python-pyzmq (package (name "python-pyzmq") - (version "17.1.2") + (version "22.0.3") (source (origin (method url-fetch) (uri (pypi-uri "pyzmq" version)) (sha256 - (base32 "1pyxxrz60f88ffm0y6vpbx3q8jcr9ybz8fcilihwzwhh36n84ax7")))) + (base32 "0bgrn65cxfz1c1sjrgyq5dy1mkhppxxbizd5wvrl03cq4zhkrxpp")))) (build-system python-build-system) (arguments `(#:configure-flags @@ -8515,14 +8601,14 @@ PEP 8.") (define-public python-pyflakes (package (name "python-pyflakes") - (version "2.2.0") + (version "2.3.1") (source (origin (method url-fetch) (uri (pypi-uri "pyflakes" version)) (sha256 - (base32 - "1j3zqbiwkyicvww499bblq33x0bjpzdrxajhaysr7sk7x5gdgcim")) + (base32 + "1ny10364ciqh4ripasj4zzv4145l21l3s85m3qlrvfq5pk58xg7m")) (patches (search-patches "python-pyflakes-fix-tests.patch")))) (build-system python-build-system) (home-page "https://github.com/PyCQA/pyflakes") @@ -8562,13 +8648,13 @@ cyclomatic complexity of Python source code.") (define-public python-flake8 (package (name "python-flake8") - (version "3.8.4") + (version "3.9.0") (source (origin (method url-fetch) (uri (pypi-uri "flake8" version)) (sha256 (base32 - "0fvcrsbyzjpcli8ldbpsdbpmf238nkvwc1dy4hy82lf63rvfinma")))) + "1w65iyjnrwipv4dbcqxh725ri7mdx01d6pjyggd97c0j5cvkx1vq")))) (build-system python-build-system) (arguments `(#:phases @@ -8641,6 +8727,34 @@ design problems in your program. It contains warnings that don't belong in pyflakes and pycodestyle.") (license license:expat))) +(define-public python-flake8-continuation + (package + (name "python-flake8-continuation") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "flake8-continuation" version)) + (sha256 + (base32 + "0dzaw8jr7yhlabxhrblnrizxx17xa9ngjnbr1kidg5lapq6b9q1y")))) + (build-system python-build-system) + (propagated-inputs + `(("python-flake8" ,python-flake8) + ("python-pycodestyle" ,python-pycodestyle) + ("python-six" ,python-six))) + (home-page "https://github.com/planetlabs/flake8-continuation") + (synopsis "Flake8 Line Continuation Plugin") + (description "A Flake8 plugin that checks for the line continuation +style to be in the preferred method according to PEP-8, specifically: +@quotation +The preferred way of wrapping long lines is by using Python's implied +line continuation inside parentheses, brackets and braces. Long lines +can be broken over multiple lines by wrapping expressions in parentheses. +These should be used in preference to using a backslash for line continuation. +@end quotation") + (license license:asl2.0))) + (define-public python-flake8-implicit-str-concat (package (name "python-flake8-implicit-str-concat") @@ -8776,6 +8890,25 @@ first-class forward references that stub files use.") lints.") (license license:bsd-2))) +(define-public python-flake8-quotes + (package + (name "python-flake8-quotes") + (version "3.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "flake8-quotes" version)) + (sha256 + (base32 + "0ph5s6lxgpzz4an0ax6s5xjqypqmngwr5b1i0h9pqhzghplic49z")))) + (build-system python-build-system) + (propagated-inputs + `(("python-flake8" ,python-flake8))) + (home-page "https://github.com/zheller/flake8-quotes/") + (synopsis "Flake8 lint for quotes") + (description "This package provides a Flake8 lint for quotes.") + (license license:expat))) + (define-public python-autoflake (package (name "python-autoflake") @@ -8827,14 +8960,14 @@ Python.") (define-public python-markdown (package (name "python-markdown") - (version "3.2.1") + (version "3.3.4") (source (origin (method url-fetch) (uri (pypi-uri "Markdown" version)) (sha256 (base32 - "00k91gwhxnm8jdnm2v5xjz9irj6dbi7afywz2hpakqdbxs1ydzlh")))) + "0jbs73nincha8fkfxx267sfxac6pl0ckszjbqbb8gk4dhs8v9d9i")))) (build-system python-build-system) (native-inputs `(("python-nose" ,python-nose) @@ -9625,13 +9758,13 @@ implementations of ASN.1-based codecs and protocols.") (define-public python-ipaddress (package (name "python-ipaddress") - (version "1.0.22") + (version "1.0.23") (source (origin (method url-fetch) (uri (pypi-uri "ipaddress" version)) (sha256 (base32 - "0b570bm6xqpjwqis15pvdy6lyvvzfndjvkynilcddjj5x98wfimi")))) + "1qp743h30s04m3cg3yk3fycad930jv17q7dsslj4mfw0jlvf1y5p")))) (build-system python-build-system) (home-page "https://github.com/phihag/ipaddress") (synopsis "IP address manipulation library") @@ -10037,29 +10170,42 @@ Debian-related files, such as: (define-public python-nbformat (package (name "python-nbformat") - (version "4.4.0") + (version "5.1.3") (source (origin (method url-fetch) (uri (pypi-uri "nbformat" version)) (sha256 (base32 - "00nlf08h8yc4q73nphfvfhxrcnilaqanb8z0mdy6nxk0vzq4wjgp")))) + "1j6idwsw59cslsssvlkg2bkfpvd6ri7kghbp14jwcw87sy57h5mm")))) (build-system python-build-system) - (arguments `(#:tests? #f)) ; no test target (propagated-inputs `(("python-ipython-genutils" ,python-ipython-genutils) ("python-jsonschema" ,python-jsonschema) ("python-jupyter-core" ,python-jupyter-core) ("python-traitlets" ,python-traitlets))) + (native-inputs + `(("python-pytest" ,python-pytest))) (home-page "https://jupyter.org") (synopsis "Jupyter Notebook format") (description "This package provides the reference implementation of the Jupyter Notebook format and Python APIs for working with notebooks.") + (properties `((python2-variant . ,(delay python2-nbformat)))) (license license:bsd-3))) (define-public python2-nbformat - (package-with-python2 python-nbformat)) + (let ((parent (package-with-python2 + (strip-python2-variant python-nbformat)))) + (package + (inherit parent) + (version "4.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nbformat" version)) + (sha256 + (base32 + "00nlf08h8yc4q73nphfvfhxrcnilaqanb8z0mdy6nxk0vzq4wjgp"))))))) (define-public python-bleach (package @@ -10210,36 +10356,57 @@ time.") (define-public python-nbconvert (package (name "python-nbconvert") - (version "5.0.0b1") + (version "6.0.7") (source (origin (method url-fetch) (uri (pypi-uri "nbconvert" version)) (sha256 (base32 - "0brclbb18l4nmd5qy3dl9wn05rjdh1fz4rmzdlfqacj12rcdvdgp")))) + "00lhqaxn481qvk2w5568asqlsnvrw2fm61p1vssx3m7vdnl17g6b")))) (build-system python-build-system) (arguments - `(;; The "bdist_egg" target is disabled by default, causing the installation - ;; to fail. - #:configure-flags (list "bdist_egg") - ;; FIXME: 5 failures, 40 errors. - #:tests? #f)) - ;; #:phases - ;; (modify-phases %standard-phases - ;; (replace 'check - ;; (lambda _ - ;; (zero? (system* "py.test" "-v"))))) + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + + ;; This seems to require Chromium. + (delete-file "nbconvert/exporters/tests/test_webpdf.py") + + ;; This depends on the python3 kernel, which is provided by a + ;; package that depends on nbconvert. + (delete-file "nbconvert/preprocessors/tests/test_execute.py") + + ;; Most of these tests fail because nbconvert fails to execute + ;; itself. + (delete-file "nbconvert/tests/test_nbconvertapp.py") + + ;; One test here fails with an unclear error. It looks like + ;; "%%pylabprint" is supposed to be expanded to some other + ;; code, but isn't. + (delete-file "nbconvert/filters/tests/test_strings.py") + + ;; Some tests need HOME + (setenv "HOME" "/tmp") + (invoke "pytest"))))))) (native-inputs `(("python-pytest" ,python-pytest))) (propagated-inputs `(("python-bleach" ,python-bleach) + ("python-defusedxml" ,python-defusedxml) ("python-entrypoints" ,python-entrypoints) ("python-jinja2" ,python-jinja2) ("python-jupyter-core" ,python-jupyter-core) ("python-mistune" ,python-mistune) + ("python-nbclient" ,python-nbclient) ("python-nbformat" ,python-nbformat) + ("python-pandocfilters" ,python-pandocfilters) ("python-pygments" ,python-pygments) + ("python-jupyterlab-pygments" ,python-jupyterlab-pygments) + ("python-testpath" ,python-testpath) ("python-traitlets" ,python-traitlets))) (home-page "https://jupyter.org") (synopsis "Converting Jupyter Notebooks") @@ -10256,48 +10423,88 @@ convert an @code{.ipynb} notebook file into various static formats including: @item ReStructured Text (rst) @item executable script @end enumerate\n") - (license license:bsd-3))) + (license license:bsd-3) + (properties `((python2-variant . ,(delay python2-nbconvert)))))) (define-public python2-nbconvert - (package-with-python2 python-nbconvert)) + (let ((parent + (package-with-python2 + (strip-python2-variant python-nbconvert)))) + (package + (inherit parent) + (version "5.0.0b1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nbconvert" version)) + (sha256 + (base32 + "0brclbb18l4nmd5qy3dl9wn05rjdh1fz4rmzdlfqacj12rcdvdgp")))) + (arguments + `(;; The "bdist_egg" target is disabled by default, causing the installation + ;; to fail. + #:configure-flags (list "bdist_egg") + ;; FIXME: 5 failures, 40 errors. + #:tests? #f)) + (propagated-inputs + `(("python-bleach" ,python-bleach) + ("python-entrypoints" ,python-entrypoints) + ("python-jinja2" ,python-jinja2) + ("python-jupyter-core" ,python-jupyter-core) + ("python-mistune" ,python-mistune) + ("python-nbformat" ,python-nbformat) + ("python-pygments" ,python-pygments) + ("python-traitlets" ,python-traitlets)))))) (define-public python-notebook (package (name "python-notebook") - (version "5.7.4") + (version "6.3.0") (source (origin (method url-fetch) (uri (pypi-uri "notebook" version)) (sha256 (base32 - "0jm7324mbxljmn9hgapj66q7swyz5ai92blmr0jpcy0h80x6f26r")))) + "0zfwr87ndjzmdp9adpc9lby1hdqdkjp2q7c9vff3wiw1dj6kkjfb")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ + (lambda* (#:key tests? inputs outputs #:allow-other-keys) ;; These tests require a browser (delete-file-recursively "notebook/tests/selenium") - ;; Some tests need HOME - (setenv "HOME" "/tmp") - ;; This file contains "warningfilters", which are not supported - ;; by this version of nose. - (delete-file "setup.cfg") - (with-directory-excursion "/tmp" - (invoke "nosetests" "-v")) - #t))))) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; Some tests need HOME + (setenv "HOME" "/tmp") + (with-directory-excursion "/tmp" + (invoke "pytest" "-vv" + ;; TODO: This tests fails because nbconvert does not + ;; list "python" as a format. + "-k" "not test_list_formats")))))))) (propagated-inputs - `(("python-jupyter-core" ,python-jupyter-core) - ("python-nbformat" ,python-nbformat) + `(("python-argon2-cffi" ,python-argon2-cffi) + ("python-ipykernel" ,python-ipykernel) + ("python-ipython-genutils" ,python-ipython-genutils) + ("python-jinja2" ,python-jinja2) + ("python-jupyter-client" ,python-jupyter-client) + ("python-jupyter-core" ,python-jupyter-core) ("python-nbconvert" ,python-nbconvert) + ("python-nbformat" ,python-nbformat) ("python-prometheus-client" ,python-prometheus-client) + ("python-pyzmq" ,python-pyzmq) ("python-send2trash" ,python-send2trash) - ("python-terminado" ,python-terminado))) + ("python-terminado" ,python-terminado) + ("python-tornado" ,python-tornado-6) + ("python-traitlets" ,python-traitlets))) (native-inputs - `(("python-nose" ,python-nose) - ("python-sphinx" ,python-sphinx) - ("python-requests" ,python-requests))) + `(("python-coverage" ,python-coverage) + ("python-nbval" ,python-nbval) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-requests" ,python-requests) + ("python-requests-unixsocket" ,python-requests-unixsocket))) (home-page "https://jupyter.org/") (synopsis "Web-based notebook environment for interactive computing") (description @@ -10339,11 +10546,7 @@ interactive computing.") "1ismyaxbv9d56yqqqb8xl58hg0iq0bbyy014a53y1g3hfbc8g7q7")))) (build-system python-build-system) (propagated-inputs - `(("python-ipykernel" ,python-ipykernel) - ("python-notebook" ,python-notebook))) - (native-inputs - `(("python-certifi" ,python-certifi) - ("python-nose" ,python-nose))) + `(("python-notebook" ,python-notebook))) (home-page "https://ipython.org") (synopsis "IPython HTML widgets for Jupyter") (description "This package provides interactive HTML widgets for Jupyter @@ -10353,22 +10556,26 @@ notebooks.") (define-public python-ipywidgets (package (name "python-ipywidgets") - (version "7.5.1") + (version "7.6.3") (source (origin (method url-fetch) (uri (pypi-uri "ipywidgets" version)) (sha256 (base32 - "15sww2mvnkqlvx55gwa82v05062a8j1xpncnqna4k9sl53hgcig9")))) + "1w217j8i53x14l7b05fk300k222zs9vkcjaa1rbrw3sk43k466lz")))) (build-system python-build-system) (propagated-inputs - `(("python-ipython" ,python-ipython) + `(("python-ipykernel" ,python-ipykernel) + ("python-ipython" ,python-ipython) + ("python-jupyterlab-widgets" ,python-jupyterlab-widgets) + ("python-nbformat" ,python-nbformat) ("python-traitlets" ,python-traitlets) ("python-widgetsnbextension" ,python-widgetsnbextension))) (native-inputs - `(("python-nose" ,python-nose) - ("python-pytest" ,python-pytest))) + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) (home-page "https://ipython.org") (synopsis "IPython HTML widgets for Jupyter") (description "Ipywidgets are interactive HTML widgets for Jupyter @@ -10401,36 +10608,6 @@ in the data.") (description "This package provides a terminal-based console frontend for Jupyter kernels. It also allows for console-based interaction with non-Python Jupyter kernels such as IJulia and IRKernel.") - (properties `((python2-variant . ,(delay python2-jupyter-console)))) - (license license:bsd-3))) - -(define-public python2-jupyter-console - (package - (name "python2-jupyter-console") - (version "5.2.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "jupyter_console" version)) - (sha256 - (base32 - "1kam1qzgwr7srhm5r6aj90di5sws4bq0jmiw15452ddamb9yspal")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 - #:tests? #f)) ; Tests only run in a TTY. - (propagated-inputs - `(("python2-ipykernel" ,python2-ipykernel) - ("python2-jupyter-client" ,python2-jupyter-client) - ("python2-prompt-toolkit" ,python2-prompt-toolkit-1) - ("python2-pygments" ,python2-pygments))) - (native-inputs - `(("python2-nose" ,python2-nose))) - (home-page "https://jupyter.org") - (synopsis "Jupyter terminal console") - (description "This package provides a terminal-based console frontend for -Jupyter kernels. It also allows for console-based interaction with non-Python -Jupyter kernels such as IJulia and IRKernel.") (license license:bsd-3))) ;; The python-ipython and python-jupyter-console require each other. To get @@ -11003,13 +11180,13 @@ minimal and fast API targeting the following uses: (define-public python-icalendar (package (name "python-icalendar") - (version "4.0.5") + (version "4.0.7") (source (origin (method url-fetch) (uri (pypi-uri "icalendar" version)) (sha256 (base32 - "14ynjj65kfmlcvpb7k097w789wvxncd3cr3xz5m1jz9yl9v6vv5q")))) + "19574j3jwssm2dkqykih4568xqfgjsa3hcd79yl5s2vfys3qvh8g")))) (build-system python-build-system) (propagated-inputs `(("python-dateutil" ,python-dateutil) @@ -11463,6 +11640,56 @@ Pytest but stripped of Pytest specific details.") (propagated-inputs `(("python-importlib-metadata" ,python2-importlib-metadata-bootstrap)))))) +(define-public python-plumbum + (package + (name "python-plumbum") + (version "1.7.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "plumbum" version)) + (sha256 + (base32 "1kidj821k79dw064rlxh84xamb9h79ychg3pgj81jlvm5hs48xri")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;no tests + (native-inputs + ;; XXX: Not actually used since there are no tests but required for + ;; build. + `(("python-pytest" ,python-pytest))) + (home-page "https://plumbum.readthedocs.io") + (synopsis "Python shell combinators library") + (description + "Plumbum is a library of tools for replacing shell scripts with Python +code.") + (license license:expat))) + +(define-public python-deprecation + (package + (name "python-deprecation") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "deprecation" version)) + (sha256 + (base32 + "1zqqjlgmhgkpzg9ss5ki8wamxl83xn51fs6gn2a8cxsx9vkbvcvj")))) + (build-system python-build-system) + (propagated-inputs + `(("python-packaging" ,python-packaging))) + (native-inputs + `(("python-unittest2" ,python-unittest2))) + (home-page "https://deprecation.readthedocs.io/") + (synopsis "Python library to handle automated deprecations") + (description + "This is a library that enables automated deprecations. It offers the +@code{deprecated()} decorator to wrap functions, providing proper warnings +both in documentation and via Python’s warnings system, as well as the +@code{deprecation.fail_if_not_removed()} decorator for test methods to ensure +that deprecated code is eventually removed.") + (license license:asl2.0))) + (define-public python-tox (package (name "python-tox") @@ -13101,13 +13328,13 @@ graphviz.") (define-public python-fastimport (package (name "python-fastimport") - (version "0.9.8") + (version "0.9.9") (source (origin (method url-fetch) (uri (pypi-uri "fastimport" version)) (sha256 - (base32 "1fb3b7y3sw55f6wykxx478ybkirz0l52lgdqmbhmc0h0jzmyiwmj")))) + (base32 "06gk14qgm9dxx3pzjn0ckdbywc8ial2bjfzddqwlr4bn1nnqkbll")))) (build-system python-build-system) (home-page "https://github.com/jelmer/python-fastimport") (synopsis "VCS fastimport parser and generator in Python") @@ -13204,13 +13431,13 @@ It uses LR parsing and does extensive error checking.") (define-public python-tabulate (package (name "python-tabulate") - (version "0.8.7") + (version "0.8.9") (source (origin (method url-fetch) (uri (pypi-uri "tabulate" version)) (sha256 (base32 - "01shi7bmj09f0bcm5s0c9skys063lzp76p0n4a2xmg041ni269yv")))) + "19qkdz8xwk5jxa5xn53mnk76qnh4ysm81vzj664jw1b0azr167gb")))) (build-system python-build-system) (arguments ;; FIXME: The pypi release tarball is missing a 'test/common.py' @@ -14172,14 +14399,14 @@ relays publish about themselves.") (define-public python-pyserial (package (name "python-pyserial") - (version "3.4") + (version "3.5") (source (origin (method url-fetch) (uri (pypi-uri "pyserial" version)) (sha256 (base32 - "09y68bczw324a4jb9a1cfwrbjhq179vnfkkkrybbksp0vqgl0bbf")))) + "1nyd4m4mnrz8scbfqn4zpq8gnbl4x42w5zz62vcgpzqd2waf0xrw")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; FIXME: 3/49 tests are failing. @@ -15431,7 +15658,7 @@ specified to apply on the key before comparison (e.g. @code{string.lower})).") ;;https://bitbucket.org/fdik/pypeg/issues/36/test-failures-on-py35 '(#:tests? #f)) (home-page "https://fdik.org/pyPEG/") - (synopsis "Parsering Expression Grammars in Python") + (synopsis "Parsing Expression Grammars in Python") (description "PyPEG is an intrinsic parser interpreter framework for Python. It is based on Parsing Expression Grammars, PEG. With pyPEG you can parse many formal languages.") @@ -18217,13 +18444,13 @@ user's @file{~/Trash} directory.") (define-public python-yamllint (package (name "python-yamllint") - (version "1.26.0") + (version "1.26.1") (source (origin (method url-fetch) (uri (pypi-uri "yamllint" version)) (sha256 - (base32 "11qhs1jk9pwvyk5k3q5blh9sq42dh1ywdf1f3i2zixf7hncwir5h")))) + (base32 "090krlxj7az0d9yl8i20vjrqi66dfxx7y5xakjhxzsfp7qmldnc7")))) (build-system python-build-system) (propagated-inputs `(("python-pathspec" ,python-pathspec) @@ -20373,14 +20600,14 @@ of Python libraries for building Python applications.") (define-public python-astor (package (name "python-astor") - (version "0.7.1") + (version "0.8.1") (source (origin (method url-fetch) (uri (pypi-uri "astor" version)) (sha256 (base32 - "13gv6f2xz9i564byp21gcpc0l3w4cs23k1wbcam8kky2ls3hvhwm")))) + "0ppscdzzvxpznclkmhhj53iz314x3pfv4yc7c6gwxqgljgdgyvka")))) (build-system python-build-system) ;; FIXME: There are two errors and two test failures. (arguments `(#:tests? #f)) @@ -20797,6 +21024,64 @@ by Igor Pavlov.") (define-public python2-pylzma (package-with-python2 python-pylzma)) +(define-public python-ifaddr + (package + (name "python-ifaddr") + (version "0.1.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ifaddr" version)) + (sha256 + (base32 + "150sxdlicwrphmhnv03ykxplyd2jdrxz0mikgnivavgilrn8m7hz")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "nosetests")))))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://github.com/pydron/ifaddr") + (synopsis "Network interface and IP address enumeration library") + (description "This package provides a network interface and IP address +enumeration library in Python.") + (license license:expat))) + +(define-public python-zeroconf + (package + (name "python-zeroconf") + (version "0.28.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "zeroconf" version)) + (sha256 + (base32 + "0narq8haa3b375vfblbyil77n8bw0wxqnanl91pl0wwwm884mqjb")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (propagated-inputs + `(("python-ifaddr" ,python-ifaddr))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ ;; Networking isn't available for these tests. + (invoke "nosetests" "-v" + "--exclude" "test_integration_with_listener_ipv6" + "--exclude" "test_launch_and_close_v6_only" + "--exclude" "test_launch_and_close_v4_v6" + "--exclude" "test_launch_and_close")))))) + (home-page "https://github.com/jstasiak/python-zeroconf") + (synopsis "Pure Python mDNS service discovery") + (description + "Pure Python multicast DNS (mDNS) service discovery library (Bonjour/Avahi +compatible).") + (license license:lgpl2.1+))) + (define-public python2-zeroconf (package (name "python2-zeroconf") @@ -21440,17 +21725,85 @@ the syntactic logic to configure and launch jobs in an execution environment.") (define-public python-flit (package (name "python-flit") - (version "3.0.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "flit" version)) - (sha256 - (base32 - "14q8qa48bli2mniznc8b54qkwvhbik4kw99y01fi5gzzl620zzml")))) + (version "3.2.0") + ;; We fetch the sources via git because on pypi the package is split into + ;; two parts: flit and flit_core; flit_core cannot be built without flit. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/takluyver/flit") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0fpqxpz5bv2xpv1akmc0c8yfss6sj09wdzxrlf3qw1lp1jhbzpyc")))) (build-system python-build-system) (arguments - `(#:tests? #f)) ; XXX: Check requires network access. + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'bootstrap + (lambda* (#:key inputs #:allow-other-keys) + (let ((home (string-append (getcwd) "/home"))) + (mkdir-p home) + (setenv "HOME" home)) + (for-each make-file-writable (find-files ".")) + (copy-recursively (assoc-ref inputs "python-testpath") + (string-append (getcwd) "/testpath")) + (substitute* "pyproject.toml" + (("\"testpath\",") "")) + (invoke "python" "bootstrap_dev.py"))) + (replace 'build + (lambda _ + ;; A ZIP archive should be generated, but it fails with "ZIP does + ;; not support timestamps before 1980". Luckily, + ;; SOURCE_DATE_EPOCH is respected, which we set to some time in + ;; 1980. + (setenv "SOURCE_DATE_EPOCH" "315532800") + (for-each (lambda (toml) + (invoke "python3" "-m" "flit" + "--debug" "--ini-file" toml + "build")) + '("testpath/pyproject.toml" + "pyproject.toml")) + (with-directory-excursion "flit_core" + (invoke "python" "build_dists.py")))) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (let ((out (assoc-ref outputs "out"))) + (delete-file-recursively "./home") + (for-each (lambda (wheel) + (format #true wheel) + (invoke "python" "-m" "pip" "install" + wheel (string-append "--prefix=" out))) + (append + (find-files "flit_core/dist" "\\.whl$") + (find-files "dist" "\\.whl$"))))))) + #:tests? #f)) ; XXX: Check requires network access. + (propagated-inputs + `(("python-pytoml" ,python-pytoml) + ("python-toml" ,python-toml))) + (native-inputs + `(("python-docutils" ,python-docutils) + ("python-responses" ,python-responses) + ("python-pygments-github-lexers" ,python-pygments-github-lexers) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-sphinx" ,python-sphinx) + ("python-sphinxcontrib-github-alt" ,python-sphinxcontrib-github-alt) + ;; This package needs testpath, but testpath also needs flit... + ("python-testpath" + ,(let ((name "python-testpath") + (version "0.4.4")) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jupyter/testpath") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fwv4d3p54xx1x942s104irr35lszvv6jnr4nn1scsfvc0m1qmbk"))))))) (home-page "https://flit.readthedocs.io/") (synopsis "Simple packaging tool for simple packages") @@ -23331,12 +23684,12 @@ dates in almost any string formats commonly found on web pages.") ;; This invokation is taken from tox.ini. (invoke "nosetests" "-d" "-v" "tests/")))))) (home-page "https://github.com/akesterson/dpath-python") - (synopsis "Filesystem-like pathing and searching for dictionaries") + (synopsis "File-system-like pathing and searching for dictionaries") (description "@code{python-dpath} is a library for accessing and searching dictionaries via /slashed/paths ala xpath. -Basically it lets you glob over a dictionary as if it were a filesystem. It +Basically it lets you glob over a dictionary as if it were a file system. It allows you to specify globs (ala the bash eglob syntax, through some advanced fnmatch.fnmatch magic) to access dictionary elements, and provides some facility for filtering those results.") @@ -23552,12 +23905,34 @@ cleanly print different types of messages.") "NestedText is a file format for holding data that is to be entered, edited, or viewed by people. It allows data to be organized into a nested collection of dictionaries, lists, and strings. In this way it is similar to JSON and YAML, but -without the complexity and risk of YAML and without the syntatic clutter of JSON. +without the complexity and risk of YAML and without the syntactic clutter of JSON. NestedText is both simple and natural. Only a small number of concepts and rules must be kept in mind when creating it. It is easily created, modified, or viewed with a text editor and easily understood and used by both programmers and non-programmers.") (license license:expat))) ; MIT license +(define-public python-nest-asyncio + (package + (name "python-nest-asyncio") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nest_asyncio" version)) + (sha256 + (base32 + "1anha29fcijminn5bh2icnx8x7nk39lna9wkc72262i12p2s3idg")))) + (build-system python-build-system) + (home-page "https://github.com/erdewit/nest_asyncio") + (synopsis "Patch asyncio to allow nested event loops") + (description + "By design @code{asyncio} does not allow its event loop to be nested. +This presents a practical problem: when in an environment where the event loop +is already running it's impossible to run tasks and wait for the result. This +module patches @code{asyncio} to allow nested use of @code{asyncio.run} and +@code{loop.run_until_complete}.") + (license license:bsd-3))) + (define-public python-parallel (package (name "python-parallel") @@ -24136,3 +24511,164 @@ number of words, syllables, and sentences.") "This package provides a Python library that can parse OPML, FOAF, and iGoogle subscription lists.") (license license:expat))) + +(define-public python-smartypants + (package + (name "python-smartypants") + (version "2.0.1") + (source + (origin + ;; There's no source tarball for 2.0.1 on PyPI. + (method git-fetch) + (uri (git-reference + (url "https://github.com/leohemsted/smartypants.py") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00p1gnb9pzb3svdq3c5b9b332gsp50wrqqa39gj00m133zadanjp")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + ;; Its `setup.py test` doesn't report failure with exit status, so + ;; we use `nose` instead. + (lambda _ + (invoke "nosetests" "-v" "--exclude=^load_tests$")))))) + (native-inputs + ;; For tests. + `(("python-docutils" ,python-docutils) + ("python-nose" ,python-nose) + ("python-pygments" ,python-pygments))) + (home-page "https://github.com/leohemsted/smartypants.py") + (synopsis "Translate punctuation characters into smart quotes") + (description + "@command{smartpants} can perform the following transformations: +@enumerate +@item Straight quotes ( \" and ' ) into \"curly\" quote HTML entities +@item Backticks-style quotes (``like this'') into \"curly\" quote HTML +entities +@item Dashes (-- and ---) into en- and em-dash entities +@item Three consecutive dots (... or . . .) into an ellipsis entity +@end enumerate") + (license license:bsd-3))) + +(define-public python-typogrify + (package + (name "python-typogrify") + (version "2.0.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "typogrify" version)) + (sha256 + (base32 + "0f6b2gnnxjbx1fbmkcscc6qjr4hi78kwm1wx4b766ha3va66dr4b")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "nosetests" "-v")))))) + (propagated-inputs + `(("python-smartypants" ,python-smartypants))) + (native-inputs + ;; For tests. + `(("python-nose" ,python-nose))) + (home-page "https://github.com/mintchaos/typogrify") + (synopsis "Filters to transform text into typographically-improved HTML") + (description + "@code{typogrify} provides a set of custom filters that automatically +apply various transformations to plain text in order to yield +typographically-improved HTML. While often used in conjunction with Jinja and +Django template systems, the filters can be used in any environment.") + (license license:bsd-3))) + +(define-public python-ld + (package + (name "python-ld") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ld" version)) + (sha256 + (base32 + "1k4ydp5rgkv4985v459kcl06i1igjm1ywvh2vkbi9ck1zyyri1z5")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/nir0s/ld") + (synopsis "OS platform information API") + (description + "The ld package provides information about the GNU/Linux distribution it +runs on, such as a reliable machine-readable ID, or version information.") + (license license:asl2.0))) + +(define-public python-quicktions + (package + (name "python-quicktions") + (version "1.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "quicktions" version)) + (sha256 + (base32 + "1px21a6x527i1bsr2p6bbf3jziqpvd1vjkvvzh13gsy4iip0yvzn")) + (modules '((guix build utils))) + (snippet + '(begin + ;; This file is generated by Cython. + (delete-file "src/quicktions.c") #t)))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'cythonize-sources + (lambda _ + (with-directory-excursion "src" + (invoke "cython" "quicktions.pyx")))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest")) + #t))))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/scoder/quicktions") + (synopsis "Fast fractions data type for rational numbers") + (description + "This package provides fast fractions data type for rational numbers. It +is the cythonized version of @code{fractions.Fraction}.") + (license license:psfl))) + +(define-public python-pathvalidate + (package + (name "python-pathvalidate") + (version "2.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pathvalidate" version)) + (sha256 + (base32 "0s14ycjgb44lxr2wg8lrq3b7kybmmrbf7yqz47xrqgn2gr6dk6rw")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) + ;; Tests disabled because of circular dependencies. + ;; pathvalidate tests depend on pytest-md-report, which + ;; depends on pathvalidate. + (native-inputs + `(("python-allpairspy" ,python-allpairspy) + ("python-click" ,python-click) + ("python-faker" ,python-faker) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/thombashi/pathvalidate") + (synopsis "Sanitize strings representing paths") + (description + "@code{pathvalidate} is a Python library to sanitize/validate strings +representing paths or filenames.") + (license license:expat))) diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index d718b520bd..fb1a3b598e 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -20,6 +20,7 @@ ;;; Copyright © 2020 Jonathan Brielmaier <jonathan.brielmaier@web.de> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot> ;;; ;;; This file is part of GNU Guix. ;;; @@ -88,6 +89,7 @@ #:use-module (gnu packages pulseaudio) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-xyz) #:use-module (gnu packages regex) #:use-module (gnu packages ruby) @@ -277,210 +279,6 @@ other text such as code. The syntax uses the syntax of the Django template system, and the core design of Django is reused in Grantlee.") (license license:lgpl2.1+))) -(define-public qt-4 - (package - (name "qt") - (version "4.8.7") - (source (origin - (method url-fetch) - (uri (string-append "http://download.qt-project.org/archive/qt/" - (string-copy version 0 (string-rindex version #\.)) - "/" version - "/qt-everywhere-opensource-src-" - version ".tar.gz")) - (sha256 - (base32 - "183fca7n7439nlhxyg1z7aky0izgbyll3iwakw4gwivy16aj5272")) - (patches (search-patches "qt4-ldflags.patch")) - (modules '((guix build utils))) - (snippet - ;; Remove webkit module, which is not built. - '(begin (delete-file-recursively "src/3rdparty/webkit") - #t)))) - (build-system gnu-build-system) - (propagated-inputs - `(("mesa" ,mesa))) - (inputs - `(("alsa-lib" ,alsa-lib) - ("bluez" ,bluez) - ("cups" ,cups) - ("dbus" ,dbus) - ("double-conversion" ,double-conversion) - ("expat" ,expat) - ("fontconfig" ,fontconfig) - ("freetype" ,freetype) - ("glib" ,glib) - ("gstreamer" ,gstreamer) - ("gst-plugins-base" ,gst-plugins-base) - ("icu4c" ,icu4c) - ("jasper" ,jasper) - ("libinput" ,libinput-minimal) - ("libmng" ,libmng) - ("libpci" ,pciutils) - ("libpng" ,libpng) - ("libtiff" ,libtiff) - ("libwebp" ,libwebp) - ("libx11" ,libx11) - ("libxcomposite" ,libxcomposite) - ("libxcursor" ,libxcursor) - ("libxext" ,libxext) - ("libxfixes" ,libxfixes) - ("libxi" ,libxi) - ("libxinerama" ,libxinerama) - ("libxkbcommon" ,libxkbcommon) - ("libxml2" ,libxml2) - ("libxrandr" ,libxrandr) - ("libxrender" ,libxrender) - ("libxslt" ,libxslt) - ("libxtst" ,libxtst) - ("mtdev" ,mtdev) - ("mariadb-dev" ,mariadb "dev") - ("nss" ,nss) - ("postgresql" ,postgresql) - ("pulseaudio" ,pulseaudio) - ("pcre2" ,pcre2) - ("sqlite" ,sqlite) - ("udev" ,eudev) - ("unixodbc" ,unixodbc) - ("wayland" ,wayland) - ("xcb-util" ,xcb-util) - ("xcb-util-image" ,xcb-util-image) - ("xcb-util-keysyms" ,xcb-util-keysyms) - ("xcb-util-renderutil" ,xcb-util-renderutil) - ("xcb-util-wm" ,xcb-util-wm) - ("zlib" ,zlib) - ("libjpeg" ,libjpeg-turbo) - ("libsm" ,libsm) - ("openssl" ,openssl-1.0))) - (native-inputs - `(;; XXX: The JavaScriptCore engine does not build with the C++11 standard. - ;; We could build it with -std=gnu++98, but then we'll get in trouble with - ;; ICU later. Just keep using GCC 5 for now. - ("gcc@5" ,gcc-5) - ("bison" ,bison) - ("flex" ,flex) - ("gperf" ,gperf) - ("perl" ,perl) - ("pkg-config" ,pkg-config) - ("python" ,python-2) - ("ruby" ,ruby) - ("which" ,(@ (gnu packages base) which)))) - ;; Note: there are 37 MiB of examples and a '-exampledir' configure flags, - ;; but we can't make them a separate output because "out" and "examples" - ;; would refer to each other. - (outputs '("out" ;112MiB core + 37MiB examples - "doc")) ;280MiB of HTML + code - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'set-paths 'hide-default-gcc - (lambda* (#:key inputs #:allow-other-keys) - (let ((gcc (assoc-ref inputs "gcc"))) - ;; Remove the default GCC from CPLUS_INCLUDE_PATH to prevent - ;; conflicts with the GCC 5 input. - (setenv "CPLUS_INCLUDE_PATH" - (string-join - (delete (string-append gcc "/include/c++") - (string-split (getenv "CPLUS_INCLUDE_PATH") #\:)) - ":")) - #t))) - (replace - 'configure - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (doc (assoc-ref outputs "doc"))) - (substitute* '("configure") - (("/bin/pwd") (which "pwd"))) - (substitute* "src/corelib/global/global.pri" - (("/bin/ls") (which "ls"))) - - (invoke - "./configure" - "-verbose" - "-prefix" out - "-nomake" "examples demos" - ;; Note: Don't pass '-docdir' since 'qmake' and - ;; libQtCore would record its value, thereby defeating - ;; the whole point of having a separate output. - "-datadir" (string-append out "/share/qt-" ,version - "/data") - "-importdir" (string-append out "/lib/qt-4" - "/imports") - "-plugindir" (string-append out "/lib/qt-4" - "/plugins") - "-translationdir" (string-append out "/share/qt-" ,version - "/translations") - "-demosdir" (string-append out "/share/qt-" ,version - "/demos") - "-examplesdir" (string-append out "/share/qt-" ,version - "/examples") - "-opensource" - "-confirm-license" - ;; explicitly link with dbus instead of dlopening it - "-dbus-linked" - ;; Skip the webkit module; it fails to build on armhf - ;; and, apart from that, may pose security risks. - "-no-webkit" - ;; don't use the precompiled headers - "-no-pch" - ;; drop special machine instructions not supported - ;; on all instances of the target - ,@(if (string-prefix? "x86_64" - (or (%current-target-system) - (%current-system))) - '() - '("-no-mmx" - "-no-3dnow" - "-no-sse" - "-no-sse2")) - "-no-sse3" - "-no-ssse3" - "-no-sse4.1" - "-no-sse4.2" - "-no-avx")))) - (add-after - 'install 'move-doc - (lambda* (#:key outputs #:allow-other-keys) - ;; Because of qt4-documentation-path.patch, documentation ends up - ;; being installed in OUT. Move it to the right place. - (let* ((out (assoc-ref outputs "out")) - (doc (assoc-ref outputs "doc")) - (olddoc (string-append out "/doc")) - (docdir (string-append doc "/share/doc/qt-" ,version))) - (mkdir-p (dirname docdir)) - - ;; Note: We can't use 'rename-file' here because OUT and DOC are - ;; different "devices" due to bind-mounts. - (copy-recursively olddoc docdir) - (delete-file-recursively olddoc) - #t)))))) - (native-search-paths - (list (search-path-specification - (variable "QMAKEPATH") - (files '("lib/qt5"))) - (search-path-specification - (variable "QML2_IMPORT_PATH") - (files '("lib/qt5/qml"))) - (search-path-specification - (variable "QT_PLUGIN_PATH") - (files '("lib/qt5/plugins"))) - (search-path-specification - (variable "XDG_DATA_DIRS") - (files '("share"))) - (search-path-specification - (variable "XDG_CONFIG_DIRS") - (files '("etc/xdg"))))) - (home-page "https://www.qt.io/") - (synopsis "Cross-platform GUI library") - (description "Qt is a cross-platform application and UI framework for -developers using C++ or QML, a CSS & JavaScript like language.") - (license (list license:lgpl2.1 license:lgpl3)) - - ;; Qt 4: 'QBasicAtomicPointer' leads to build failures on MIPS; - ;; see <http://hydra.gnu.org/build/112828>. - ;; Qt 5: assembler error; see <http://hydra.gnu.org/build/112526>. - (supported-systems (delete "mips64el-linux" %supported-systems)))) - (define (qt5-urls component version) "Return a list of URLs for VERSION of the Qt5 COMPONENT." ;; We can't use a mirror:// scheme because these URLs are not exact copies: @@ -2011,6 +1809,42 @@ and binaries removed, and adds modular support for using system libraries.") (define-public python-sip (package (name "python-sip") + (version "5.5.0") + (source + (origin + (method url-fetch) + (uri (list (pypi-uri "sip" version) + (string-append "https://www.riverbankcomputing.com/static/" + "Downloads/sip/" version + "/sip-" version ".tar.gz"))) + (sha256 + (base32 + "1idaivamp1jvbbai9yzv471c62xbqxhaawccvskaizihkd0lq0jx")))) + (build-system python-build-system) + (native-inputs + `(("python" ,python-wrapper))) + (propagated-inputs + `(("python-toml" ,python-toml) + ("python-packaging" ,python-packaging))) + (home-page "https://www.riverbankcomputing.com/software/sip/intro") + (synopsis "Python binding creator for C and C++ libraries") + (description + "SIP is a tool to create Python bindings for C and C++ libraries. It +was originally developed to create PyQt, the Python bindings for the Qt +toolkit, but can be used to create bindings for any C or C++ library. + +SIP comprises a code generator and a Python module. The code generator +processes a set of specification files and generates C or C++ code, which +is then compiled to create the bindings extension module. The SIP Python +module provides support functions to the automatically generated code.") + ;; There is a choice between a python like license, gpl2 and gpl3. + ;; For compatibility with pyqt, we need gpl3. + (license license:gpl3))) + +(define-public python-sip-4 + (package + (inherit python-sip) + (name "python-sip") (version "4.19.24") (source (origin @@ -2025,6 +1859,7 @@ and binaries removed, and adds modular support for using system libraries.") (build-system gnu-build-system) (native-inputs `(("python" ,python-wrapper))) + (propagated-inputs `()) (arguments `(#:tests? #f ; no check target #:imported-modules ((guix build python-build-system) @@ -2047,27 +1882,8 @@ and binaries removed, and adds modular support for using system libraries.") "--bindir" bin "--destdir" lib "--incdir" include))))))) - (home-page "https://www.riverbankcomputing.com/software/sip/intro") - (synopsis "Python binding creator for C and C++ libraries") - (description - "SIP is a tool to create Python bindings for C and C++ libraries. It -was originally developed to create PyQt, the Python bindings for the Qt -toolkit, but can be used to create bindings for any C or C++ library. - -SIP comprises a code generator and a Python module. The code generator -processes a set of specification files and generates C or C++ code, which -is then compiled to create the bindings extension module. The SIP Python -module provides support functions to the automatically generated code.") - ;; There is a choice between a python like license, gpl2 and gpl3. - ;; For compatibility with pyqt, we need gpl3. (license license:gpl3))) -(define-public python2-sip - (package/inherit python-sip - (name "python2-sip") - (native-inputs - `(("python" ,python-2))))) - (define-public python-pyqt (package (name "python-pyqt") @@ -2081,17 +1897,17 @@ module provides support functions to the automatically generated code.") (string-append "https://www.riverbankcomputing.com/static/" "Downloads/PyQt5/" version "/PyQt5-" version ".tar.gz"))) - (file-name (string-append "PyQt5-"version ".tar.gz")) + (file-name (string-append "PyQt5-" version ".tar.gz")) (sha256 (base32 "1z74295i69cha52llsqffzhb5zz7qnbjc64h8qg21l91jgf0harp")) - (patches (search-patches "pyqt-configure.patch" - "pyqt-public-sip.patch")))) + (patches (search-patches "pyqt-configure.patch")))) (build-system gnu-build-system) (native-inputs `(("qtbase" ,qtbase))) ; for qmake (propagated-inputs - `(("python-sip" ,python-sip))) + `(("python-sip" ,python-sip) + ("python-pyqt5-sip" ,python-pyqt5-sip))) (inputs `(("python" ,python-wrapper) ("qtbase" ,qtbase) @@ -2160,6 +1976,25 @@ framework. The bindings are implemented as a set of Python modules and contain over 620 classes.") (license license:gpl3))) +(define-public python-pyqt5-sip + (package + (name "python-pyqt5-sip") + (version "12.8.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyQt5_sip" version)) + (sha256 + (base32 + "1gg032ys4pccwkdzmdryadc9a4lq85nr05pag9swrsdykbdl9s9h")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;; No test code. + (home-page "https://www.riverbankcomputing.com/software/sip/") + (synopsis "Sip module support for PyQt5") + (description "Sip module support for PyQt5") + (license license:lgpl2.1+))) + (define-public python-pyqtwebengine (package (name "python-pyqtwebengine") @@ -2253,85 +2088,28 @@ itself.") (inputs (alist-delete "qtwebkit" (package-inputs python-pyqt))))) -(define-public python2-pyqt - (package/inherit python-pyqt - (name "python2-pyqt") - (propagated-inputs - `(("python-enum34" ,python2-enum34) - ("python-sip" ,python2-sip))) - (native-inputs - `(("python-sip" ,python2-sip) - ("qtbase" ,qtbase))) - (inputs - `(("python" ,python-2) - ("python2-enum34" ,python2-enum34) - ,@(alist-delete "python" (package-inputs python-pyqt)))))) - -(define-public python2-pyqtwebengine - (package/inherit - python-pyqtwebengine - (name "python2-pyqtwebengine") - (native-inputs - `(("python" ,python-2) - ("python-sip" ,python2-sip) - ;; qtbase is required for qmake - ("qtbase" ,qtbase))) +(define-public python-pyqt-builder + (package + (name "python-pyqt-builder") + (version "1.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyQt-builder" version)) + (sha256 + (base32 + "0nh0054c54ji3sm6d268fccf0y5f613spswwgwqd3rnn816hnljl")))) + (build-system python-build-system) (inputs - `(("python" ,python-2) - ("python-sip" ,python2-sip) - ("python-pyqt" ,python2-pyqt) - ("qtbase" ,qtbase) - ("qtsvg" ,qtsvg) - ("qtdeclarative" ,qtdeclarative) - ("qtwebchannel" ,qtwebchannel) - ("qtwebengine" ,qtwebengine))))) - -(define-public python2-pyqt-4 - (package (inherit python-pyqt) - (name "python2-pyqt") - (version "4.12.3") - (source - (origin - (method url-fetch) - (uri - (string-append "mirror://sourceforge/pyqt/PyQt4/" - "PyQt-" version "/PyQt4_gpl_x11-" - version ".tar.gz")) - (sha256 - (base32 - "0wnlasg62rm5d39nq1yw4namcx2ivxgzl93r5f2vb9s0yaz5l3x0")))) - (native-inputs - `(("qt" ,qt-4))) - (inputs `(("python" ,python-2))) - (propagated-inputs - `(("python-sip" ,python2-sip))) - (arguments - `(#:tests? #f ; no check target - #:modules ((srfi srfi-1) - ,@%gnu-build-system-modules) - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (sip (string-append out "/share/sip")) - (python (assoc-ref inputs "python")) - (python-version - (last (string-split python #\-))) - (python-major+minor - (string-join - (take (string-split python-version #\.) 2) - ".")) - (lib (string-append out "/lib/python" - python-major+minor - "/site-packages"))) - (invoke "python" "configure.py" - "--confirm-license" - "--bindir" bin - "--destdir" lib - "--sipdir" sip))))))) - (license (list license:gpl2 license:gpl3)))) ; choice of either license + `(("python-sip" ,python-sip))) + (home-page "https://www.riverbankcomputing.com/static/Docs/PyQt-builder/") + (synopsis "PEP 517 compliant PyQt build system") + (description "PyQt-builder is a tool for generating Python bindings for C++ +libraries that use the Qt application framework. The bindings are built on +top of the PyQt bindings for Qt. PyQt-builder is used to build PyQt itself.") + ;; Either version 2 or 3, but no other version. See the file + ;; 'pyqtbuild/builder.py' in the source distribution for more information. + (license (list license:gpl2 license:gpl3)))) (define-public python-qtpy (package diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm index ff694cecd8..36472fe966 100644 --- a/gnu/packages/radio.scm +++ b/gnu/packages/radio.scm @@ -6,6 +6,7 @@ ;;; Copyright © 2020 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2020 Charlie Ritter <chewzerita@posteo.net> ;;; Copyright © 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 João Pedro Simas <jpsimas@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -28,6 +29,7 @@ #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix utils) + #:use-module (gnu packages admin) #:use-module (gnu packages algebra) #:use-module (gnu packages audio) #:use-module (gnu packages autotools) @@ -35,6 +37,7 @@ #:use-module (gnu packages bash) #:use-module (gnu packages boost) #:use-module (gnu packages check) + #:use-module (gnu packages compression) #:use-module (gnu packages curl) #:use-module (gnu packages databases) #:use-module (gnu packages documentation) @@ -48,14 +51,17 @@ #:use-module (gnu packages glib) #:use-module (gnu packages gnome) #:use-module (gnu packages golang) + #:use-module (gnu packages gps) #:use-module (gnu packages gstreamer) #:use-module (gnu packages gtk) #:use-module (gnu packages image) + #:use-module (gnu packages javascript) #:use-module (gnu packages libusb) #:use-module (gnu packages linux) #:use-module (gnu packages logging) #:use-module (gnu packages lua) #:use-module (gnu packages maths) + #:use-module (gnu packages mp3) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) #:use-module (gnu packages networking) @@ -67,6 +73,7 @@ #:use-module (gnu packages qt) #:use-module (gnu packages readline) #:use-module (gnu packages ruby) + #:use-module (gnu packages sdl) #:use-module (gnu packages sphinx) #:use-module (gnu packages swig) #:use-module (gnu packages tcl) @@ -165,6 +172,53 @@ To install the rtl-sdr udev rules, you must extend 'udev-service-type' with this package. E.g.: @code{(udev-rules-service 'rtl-sdr rtl-sdr)}") (license license:gpl2+))) +(define-public airspyhf + (package + (name "airspyhf") + (version "1.6.8") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/airspy/airspyhf") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0n699i5a9fzzhf80fcjlqq6p2a013rzlwmwv4nmwfafy6c8cr924")))) + (build-system cmake-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("libusb" ,libusb))) + (arguments + '(#:configure-flags '("-DINSTALL_UDEV_RULES=ON") + #:tests? #f ; No tests + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-paths + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "tools/CMakeLists.txt" + (("DESTINATION \"/etc/udev/") + (string-append "DESTINATION \"" + (assoc-ref outputs "out") + "/lib/udev/"))))) + (add-after 'fix-paths 'fix-udev-rules + (lambda _ + (substitute* "tools/52-airspyhf.rules" + ;; The plugdev group does not exist; use dialout as in + ;; the hackrf package. + (("GROUP=\"plugdev\"") + "GROUP=\"dialout\""))))))) + (home-page "https://github.com/airspy/airspyhf") + (synopsis "Software defined radio driver for Airspy HF+") + (description + "This package provides the driver and utilities for controlling the Airspy +HF+ Software Defined Radio (SDR) over USB. + +To install the airspyhf udev rules, you must extend @code{udev-service-type} +with this package. E.g.: @code{(udev-rules-service 'airspyhf airspyhf)}") + (license license:bsd-3))) + (define-public chirp (package (name "chirp") @@ -286,36 +340,31 @@ used by RDS Spy, and audio files containing @dfn{multiplex} signals (MPX).") (define-public gnuradio (package (name "gnuradio") - (version "3.8.0.0") + (version "3.9.0.0") (source (origin (method url-fetch) (uri (string-append "https://www.gnuradio.org/releases/gnuradio/" "gnuradio-" version ".tar.xz")) (sha256 - (base32 "0aw55gf5549b0fz2qdi7vplcmaf92bj34h40s34b2ycnqasv900r")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Delete bundled volk to use the shared one. - (delete-file-recursively "volk") - #t)))) + (base32 "1jvm9xd0l2pz1fww4zii6hl7ccnvy256nrf70ljb594n7j9j49ha")))) (build-system cmake-build-system) (native-inputs `(("doxygen" ,doxygen) ("ghostscript" ,ghostscript) + ("js-mathjax" ,js-mathjax) ("orc" ,orc) ("pkg-config" ,pkg-config) + ("pybind11" ,pybind11) ("python-cheetah" ,python-cheetah) ("python-mako" ,python-mako) ("python-pyzmq" ,python-pyzmq) ("python-scipy" ,python-scipy) ("python-sphinx" ,python-sphinx) - ("swig" ,swig) ("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts - texlive-latex-amsmath - ;; TODO: Add newunicodechar. - texlive-latex-graphics))) + texlive-latex-amsmath + ;; TODO: Add newunicodechar. + texlive-latex-graphics))) ("xorg-server" ,xorg-server-for-tests))) (inputs `(("alsa-lib" ,alsa-lib) @@ -329,6 +378,7 @@ used by RDS Spy, and audio files containing @dfn{multiplex} signals (MPX).") ("gsm" ,gsm) ("gtk+" ,gtk+) ("jack" ,jack-1) + ("libsndfile" ,libsndfile) ("log4cpp" ,log4cpp) ("pango" ,pango) ("portaudio" ,portaudio) @@ -343,6 +393,7 @@ used by RDS Spy, and audio files containing @dfn{multiplex} signals (MPX).") ("python-pyyaml" ,python-pyyaml) ("qtbase" ,qtbase) ("qwt" ,qwt) + ("sdl" ,sdl) ("volk" ,volk) ("zeromq" ,zeromq))) (arguments @@ -355,7 +406,9 @@ used by RDS Spy, and audio files containing @dfn{multiplex} signals (MPX).") (guix build glib-or-gtk-build-system) (guix build python-build-system)) #:configure-flags - '("-DENABLE_INTERNAL_VOLK=OFF") + (list (string-append "-DMATHJAX2_ROOT=" + (assoc-ref %build-inputs "js-mathjax") + "/share/javascript/mathjax")) #:phases (modify-phases %standard-phases (add-after 'unpack 'fix-paths @@ -371,8 +424,7 @@ used by RDS Spy, and audio files containing @dfn{multiplex} signals (MPX).") (substitute* "cmake/Modules/GrPython.cmake" (("dist-packages") "site-packages")) - (substitute* '("gr-vocoder/swig/vocoder_swig.i" - "gr-vocoder/include/gnuradio/vocoder/codec2.h" + (substitute* '("gr-vocoder/include/gnuradio/vocoder/codec2.h" "gr-vocoder/include/gnuradio/vocoder/freedv_api.h") (("<codec2/") "<")) @@ -384,6 +436,19 @@ used by RDS Spy, and audio files containing @dfn{multiplex} signals (MPX).") "/bin/Xvfb :1 &")) (setenv "DISPLAY" ":1") #t)) + (replace 'check + (lambda* (#:key tests? parallel-tests? #:allow-other-keys) + (invoke "ctest" "-j" (if parallel-tests? + (number->string (parallel-job-count)) + "1") + "--output-on-failure" + ;;disable broken tests + "-E" (string-join + '(;; https://github.com/gnuradio/gnuradio/issues/3871 + "qa_header_payload_demux" + ;; https://github.com/gnuradio/gnuradio/issues/4348 + "qa_packet_headerparser_b") + "|")))) (add-after 'install 'wrap-python (assoc-ref python:%standard-phases 'wrap)) (add-after 'wrap-python 'wrap-glib-or-gtk @@ -424,40 +489,45 @@ environment.") (license license:gpl3+))) (define-public gnuradio-osmosdr - (package - (name "gnuradio-osmosdr") - (version "0.2.2") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://git.osmocom.org/gr-osmosdr") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1aqj5cylipmmjh1x1kb2j8262hxq6mi86dgb2zphj94wvsab2ghx")))) - (build-system cmake-build-system) - (native-inputs - `(("doxygen" ,doxygen) - ("pkg-config" ,pkg-config) - ("python" ,python) - ("python-mako" ,python-mako) - ("python-six" ,python-six) - ("swig" ,swig))) - (inputs - `(("boost" ,boost) - ("fftwf" ,fftwf) - ("gmp" ,gmp) - ("gnuradio" ,gnuradio) - ("hackrf" ,hackrf) - ("log4cpp" ,log4cpp) - ("rtl-sdr" ,rtl-sdr) - ("volk" ,volk))) - (synopsis "GNU Radio block for interfacing with various radio hardware") - (description "This is a block for GNU Radio allowing to use a common API + ;; No tag for version supporting Gnuradio 3.9; use commit. + (let ((commit "a100eb024c0210b95e4738b6efd836d48225bd03") + (revision "0")) + (package + (name "gnuradio-osmosdr") + (version (git-version "0.2.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.osmocom.org/gr-osmosdr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1pk5gnyznfyy510lbqzg9ijcb1fnhmn547n24aiqyrxd6i6vv1ki")))) + (build-system cmake-build-system) + (native-inputs + `(("doxygen" ,doxygen) + ("pkg-config" ,pkg-config) + ("pybind11" ,pybind11) + ("python" ,python) + ("python-mako" ,python-mako) + ("python-six" ,python-six))) + (inputs + `(("airspyhf" ,airspyhf) + ("boost" ,boost) + ("fftwf" ,fftwf) + ("gmp" ,gmp) + ("gnuradio" ,gnuradio) + ("hackrf" ,hackrf) + ("libsndfile" ,libsndfile) + ("log4cpp" ,log4cpp) + ("rtl-sdr" ,rtl-sdr) + ("volk" ,volk))) + (synopsis "GNU Radio block for interfacing with various radio hardware") + (description "This is a block for GNU Radio allowing to use a common API to access different radio hardware.") - (home-page "https://osmocom.org/projects/gr-osmosdr/wiki/GrOsmoSDR") - (license license:gpl3+))) + (home-page "https://osmocom.org/projects/gr-osmosdr/wiki/GrOsmoSDR") + (license license:gpl3+)))) (define-public libosmo-dsp (package @@ -504,36 +574,39 @@ primitives for SDR (Software Defined Radio).") (license license:gpl2+))) (define-public gnuradio-iqbalance - (package - (name "gnuradio-iqbalance") - (version "0.38.1") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://git.osmocom.org/gr-iqbal") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0ksagwz05p3b0702q7ljq7013xmp0ijp30my9z6s3p7ja8dj42s3")))) - (build-system cmake-build-system) - (native-inputs - `(("doxygen" ,doxygen) - ("pkg-config" ,pkg-config) - ("python" ,python) - ("python-numpy" ,python-numpy) - ("python-six" ,python-six) - ("swig" ,swig))) - (inputs - `(("boost" ,boost) - ("fftwf" ,fftwf) - ("gmp" ,gmp) - ("gnuradio" ,gnuradio) - ("libosmo-dsp" ,libosmo-dsp) - ("log4cpp" ,log4cpp) - ("volk" ,volk))) - (synopsis "GNU Radio block to correct IQ imbalance") - (description + ;; No tag for version supporting Gnuradio 3.9; use commit. + (let ((commit "fbee239a6fb36dd2fb564f6e6a0d393c4bc844db") + (revision "0")) + (package + (name "gnuradio-iqbalance") + (version (git-version "0.38.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.osmocom.org/gr-iqbal") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "12p193ngcs65nd3lynry119nhv40mikamqkw37wdln7lawx3nw7p")))) + (build-system cmake-build-system) + (native-inputs + `(("doxygen" ,doxygen) + ("pkg-config" ,pkg-config) + ("pybind11" ,pybind11) + ("python" ,python) + ("python-numpy" ,python-numpy) + ("python-six" ,python-six))) + (inputs + `(("boost" ,boost) + ("fftwf" ,fftwf) + ("gmp" ,gmp) + ("gnuradio" ,gnuradio) + ("libosmo-dsp" ,libosmo-dsp) + ("log4cpp" ,log4cpp) + ("volk" ,volk))) + (synopsis "GNU Radio block to correct IQ imbalance") + (description "This is a GNU Radio block to correct IQ imbalance in quadrature receivers. It's composed of two main block: @itemize @@ -541,8 +614,8 @@ receivers. It's composed of two main block: @item Optimize: Attempts to auto-detect the phase and amplitude error to feed to the fix block above. @end itemize") - (home-page "https://git.osmocom.org/gr-iqbal/") - (license license:gpl3+))) + (home-page "https://git.osmocom.org/gr-iqbal/") + (license license:gpl3+)))) (define-public gqrx (package @@ -569,6 +642,7 @@ to the fix block above. ("gnuradio-iqbalance" ,gnuradio-iqbalance) ("gnuradio-osmosdr" ,gnuradio-osmosdr) ("jack" ,jack-1) + ("libsndfile" ,libsndfile) ("log4cpp" ,log4cpp) ("portaudio" ,portaudio) ("pulseaudio" ,pulseaudio) @@ -822,7 +896,7 @@ users.") (package (inherit hamlib) (name "wsjtx-hamlib") - (version "2.3.0") + (version "2.3.1") (source (origin (method git-fetch) @@ -831,7 +905,7 @@ users.") (commit (string-append "wsjtx-" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0ampwqs7p0g8pdnwpdrbvwyqag065n96amgb3v4z332nw0nxvm10")))) + (base32 "0m4yzjcqs7a1w4lghyyckpkiy96jxdjijddxarqr3a37cl2rz23j")))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) @@ -843,20 +917,12 @@ users.") "--with-lua-binding" "--with-python-binding" "--with-tcl-binding" - "--with-xml-support") - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-tests - (lambda _ - (substitute* "tests/testloc.c" - (("dmmm2dec\\(deg, mmm, nesw\\);") - "dmmm2dec(deg, mmm, 0, nesw);")) - #t))))))) + "--with-xml-support"))))) (define-public wsjtx (package (name "wsjtx") - (version "2.3.0") + (version "2.3.1") (source (origin (method git-fetch) @@ -865,7 +931,7 @@ users.") (commit (string-append "wsjtx-" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1qf8r88ssara3pddvd3jpv5phzxwnanvdj00dxgmzq0c2jqcy2a8")))) + (base32 "0mdr4l7zii08615yn7z91spnvnqm5i9390bra9lz3aqyxrsiim91")))) (build-system qt-build-system) (native-inputs `(("asciidoc" ,asciidoc) @@ -1400,3 +1466,112 @@ Compatible hardware/software: @item Icom IC-9700 @end itemize\n") (license license:expat))) + +(define-public dream + (package + (name "dream") + (version "2.1.1") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/drm/dream/" version + "/dream-" version "-svn808.tar.gz")) + (sha256 + (base32 "01dv6gvljz64zrjbr08mybr9aicvpq2c6qskww46lngdjyhk8xs1")))) + (build-system qt-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("faad2" ,faad2) + ("fftw" ,fftw) + ("libsndfile" ,libsndfile) + ("libpcap" ,libpcap) + ("opus" ,opus) + ("pulseaudio" ,pulseaudio) + ("qtbase" ,qtbase) + ("qtsvg" ,qtsvg) + ("qtwebkit" ,qtwebkit) + ("qwt" ,qwt) + ("speexdsp" ,speexdsp) + ("zlib" ,zlib))) + (arguments + `(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-paths + (lambda* (#:key inputs outputs #:allow-other-keys) + (substitute* "dream.pro" + (("target\\.path = /usr/bin") + (string-append "target.path = " + (assoc-ref outputs "out") "/bin")) + (("documentation\\.path = /usr/share/man/man1") + (string-append "documentation.path = " + (assoc-ref outputs "out") + "/share/man/man1")) + (("/usr/include/pulse/") + (string-append (assoc-ref inputs "pulseaudio") + "/include/pulse/")) + (("/usr/include/sndfile\\.h") + (string-append (assoc-ref inputs "libsndfile") + "/include/sndfile.h")) + (("/usr/include/opus/") + (string-append (assoc-ref inputs "opus") + "/include/opus/")) + (("/usr/include/speex/") + (string-append (assoc-ref inputs "speexdsp") + "/include/speex/")) + (("/usr/include/qwt/") + (string-append (assoc-ref inputs "qwt") + "/include/qwt/")) + (("\\$\\$OUT_PWD/include/neaacdec\\.h") + (string-append (assoc-ref inputs "faad2") + "/include/neaacdec.h"))))) + (replace 'configure + (lambda _ + (invoke "qmake")))))) + (home-page "https://sourceforge.net/projects/drm/") + (synopsis "Digital Radio Mondiale receiver") + (description + "Dream is a software implementation of a Digital Radio Mondiale (DRM) +receiver.") + (license license:gpl2+))) + +(define-public welle-io + (package + (name "welle-io") + (version "2.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/albrechtl/welle.io") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "04fpm6sc431dl9i5h53xpd6k85j22sv8aawl7b6wv2fzpfsd9fwa")))) + (build-system qt-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("alsa-lib" ,alsa-lib) + ("faad2" ,faad2) + ("fftwf" ,fftwf) + ("lame" ,lame) + ("libusb" ,libusb) + ("mpg123" ,mpg123) + ("rtl-sdr" ,rtl-sdr) + ("qtbase" ,qtbase) + ("qtcharts" ,qtcharts) + ("qtdeclarative" ,qtdeclarative) + ("qtgraphicaleffects" ,qtgraphicaleffects) + ("qtmultimedia" ,qtmultimedia) + ("qtquickcontrols2" ,qtquickcontrols2))) + (arguments + `(#:configure-flags '("-DRTLSDR=ON") + #:tests? #f)) + (home-page "https://www.welle.io/") + (synopsis "DAB and DAB+ software radio") + (description + "@code{welle.io} is a Digital Audio Broadcasting (DAB and DAB+) software +defined radio with support for rtl-sdr.") + (license license:gpl2+))) diff --git a/gnu/packages/rdf.scm b/gnu/packages/rdf.scm index 0841c1fd8d..0baed8fc17 100644 --- a/gnu/packages/rdf.scm +++ b/gnu/packages/rdf.scm @@ -61,7 +61,7 @@ (version "2.0.15") (source (origin (method url-fetch) - (uri (string-append "http://download.librdf.org/source/" name + (uri (string-append "https://download.librdf.org/source/" name "-" version ".tar.gz")) (patches (search-patches "raptor2-heap-overflow.patch")) @@ -76,7 +76,7 @@ ("zlib" ,zlib))) (arguments `(#:parallel-tests? #f)) - (home-page "http://librdf.org/raptor/") + (home-page "https://librdf.org/raptor/") (synopsis "RDF syntax library") (description "Raptor is a C library providing a set of parsers and serialisers that generate Resource Description Framework (RDF) triples diff --git a/gnu/packages/rsync.scm b/gnu/packages/rsync.scm index f90feaf57f..37b15663b9 100644 --- a/gnu/packages/rsync.scm +++ b/gnu/packages/rsync.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2012, 2013 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2017, 2019 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Leo Famulari <leo@famulari.name> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; @@ -71,7 +71,7 @@ files in the destination.") (define-public librsync (package (name "librsync") - (version "2.3.1") + (version "2.3.2") (source (origin (method git-fetch) (uri (git-reference @@ -80,7 +80,7 @@ files in the destination.") (file-name (git-file-name name version)) (sha256 (base32 - "131cd4asmpm4nskidzgiy8xibbnpibvvbq857a0pcky77min5g4z")))) + "0bn29npmbw26akc6y54661irpdh6qcivcs6q48cgp3llklhhxp0q")))) (build-system cmake-build-system) (inputs `(("popt" ,popt))) diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 7452745b37..fe76cc260a 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -7117,7 +7117,7 @@ by RuboCop to deal with Ruby's Abstract Syntax Tree (AST), in particular: (define-public ruby-rexml (package (name "ruby-rexml") - (version "3.2.4") + (version "3.2.5") (source (origin (method git-fetch) ;no tests in distributed gem @@ -7126,8 +7126,7 @@ by RuboCop to deal with Ruby's Abstract Syntax Tree (AST), in particular: (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "0rhjjbkaq2f2cs8hyr2i4yjqpcyl8m0wmr2cypa401m3fvz4221i")))) + (base32 "13n6vaa80drqic2wri4q6k22qzvsn683vp5s8c9dllil6x04kn0x")))) (build-system ruby-build-system) (synopsis "XML toolkit for Ruby") (description "Inspired by Electric XML library for Java, REXML aims to be diff --git a/gnu/packages/rust.scm b/gnu/packages/rust.scm index d7bf149d89..162371026c 100644 --- a/gnu/packages/rust.scm +++ b/gnu/packages/rust.scm @@ -852,3 +852,7 @@ safety and thread safety guarantees.") (define-public rust-1.50 (rust-bootstrapped-package rust "1.50.0" "0pjs7j62maiyvkmhp9zrxl528g2n0fphp4rq6ap7aqdv0a6qz5wm")) + +(define-public rust-1.51 + (rust-bootstrapped-package rust-1.50 "1.51.0" + "0ixqkqglv3isxbvl4ldr4byrkx692wghsz3fasy1pn5kr2prnsvs")) diff --git a/gnu/packages/scheme.scm b/gnu/packages/scheme.scm index 48099ac10e..d9b0b4d03a 100644 --- a/gnu/packages/scheme.scm +++ b/gnu/packages/scheme.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2020 Pierre Neidhardt <mail@ambrevar.xyz> ;;; Copyright © 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Edouard Klein <edk@beaver-labs.com> +;;; Copyright © 2021 Philip McGrath <philip@philipmcgrath.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -43,6 +44,7 @@ #:use-module (guix build-system trivial) #:use-module (gnu packages autotools) #:use-module (gnu packages bdw-gc) + #:use-module (gnu packages bash) #:use-module (gnu packages compression) #:use-module (gnu packages databases) #:use-module (gnu packages libevent) @@ -407,94 +409,26 @@ implementation techniques and as an expository tool.") (base32 "047wpjblfzmf1msz7snrp2c2h0zxyzlmbsqr9bwsyvz3frcg0888")) (patches (search-patches + "racket-sh-via-rktio.patch" + ;; TODO: If we're no longer patching Racket source + ;; files with store paths, we may also fix the + ;; issue that necessitated the following patch: "racket-store-checksum-override.patch")))) (build-system gnu-build-system) (arguments - '(#:configure-flags - '("--enable-libz" + `(#:configure-flags + `(,(string-append "CPPFLAGS=-DGUIX_RKTIO_PATCH_BIN_SH=" + (assoc-ref %build-inputs "sh") + "/bin/sh") + "--enable-libz" "--enable-liblz4") + #:modules + ((guix build gnu-build-system) + (guix build utils) + (srfi srfi-1)) #:phases (modify-phases %standard-phases - (add-before 'configure 'pre-configure-minimal - (lambda* (#:key inputs #:allow-other-keys) - ;; Patch dynamically loaded libraries with their absolute paths. - (let* ((library-path (search-path-as-string->list - (getenv "LIBRARY_PATH"))) - (find-so (lambda (soname) - (search-path - library-path - (format #f "~a.so" soname))))) - (substitute* "collects/db/private/sqlite3/ffi.rkt" - (("ffi-lib sqlite-so") - (format #f "ffi-lib \"~a\"" (find-so "libsqlite3")))) - (substitute* "collects/openssl/libssl.rkt" - (("ffi-lib libssl-so") - (format #f "ffi-lib \"~a\"" (find-so "libssl")))) - (substitute* "collects/openssl/libcrypto.rkt" - (("ffi-lib libcrypto-so") - (format #f "ffi-lib \"~a\"" (find-so "libcrypto"))))) - (chdir "src") - #t)) - (add-before 'pre-configure-minimal 'pre-configure - (lambda* (#:key inputs #:allow-other-keys) - ;; Patch dynamically loaded libraries with their absolute paths. - (let* ((library-path (search-path-as-string->list - (getenv "LIBRARY_PATH"))) - (find-so (lambda (soname) - (search-path - library-path - (format #f "~a.so" soname)))) - (patch-ffi-libs (lambda (file libs) - (for-each - (lambda (lib) - (substitute* file - (((format #f "\"~a\"" lib)) - (format #f "\"~a\"" (find-so lib))))) - libs)))) - (substitute* "share/pkgs/math-lib/math/private/bigfloat/gmp.rkt" - (("ffi-lib libgmp-so") - (format #f "ffi-lib \"~a\"" (find-so "libgmp")))) - (substitute* "share/pkgs/math-lib/math/private/bigfloat/mpfr.rkt" - (("ffi-lib libmpfr-so") - (format #f "ffi-lib \"~a\"" (find-so "libmpfr")))) - (substitute* "share/pkgs/readline-lib/readline/rktrl.rkt" - (("\\(getenv \"PLT_READLINE_LIB\"\\)") - (format #f "\"~a\"" (find-so "libedit")))) - (for-each - (lambda (x) (apply patch-ffi-libs x)) - '(("share/pkgs/draw-lib/racket/draw/unsafe/cairo-lib.rkt" - ("libfontconfig" "libcairo")) - ("share/pkgs/draw-lib/racket/draw/unsafe/glib.rkt" - ("libglib-2.0" "libgmodule-2.0" "libgobject-2.0")) - ("share/pkgs/draw-lib/racket/draw/unsafe/jpeg.rkt" - ("libjpeg")) - ("share/pkgs/draw-lib/racket/draw/unsafe/pango.rkt" - ("libpango-1.0" "libpangocairo-1.0")) - ("share/pkgs/draw-lib/racket/draw/unsafe/png.rkt" - ("libpng")) - ("share/pkgs/db-lib/db/private/odbc/ffi.rkt" - ("libodbc")) - ("share/pkgs/gui-lib/mred/private/wx/gtk/x11.rkt" - ("libX11")) - ("share/pkgs/gui-lib/mred/private/wx/gtk/gsettings.rkt" - ("libgio-2.0")) - ("share/pkgs/gui-lib/mred/private/wx/gtk/gtk3.rkt" - ("libgdk-3" "libgtk-3")) - ("share/pkgs/gui-lib/mred/private/wx/gtk/unique.rkt" - ("libunique-1.0")) - ("share/pkgs/gui-lib/mred/private/wx/gtk/utils.rkt" - ("libgdk-x11-2.0" "libgdk_pixbuf-2.0" "libgtk-x11-2.0")) - ("share/pkgs/gui-lib/mred/private/wx/gtk/gl-context.rkt" - ("libGL")) - ("share/pkgs/sgl/gl.rkt" - ("libGL" "libGLU"))))) - #t)) - (add-after 'unpack 'patch-/bin/sh - (lambda _ - (substitute* "collects/racket/system.rkt" - (("/bin/sh") (which "sh"))) - #t)) - (add-after 'patch-/bin/sh 'patch-chez-configure + (add-after 'unpack 'patch-chez-configure (lambda* (#:key inputs outputs #:allow-other-keys) (substitute* "src/cs/c/Makefile.in" (("/bin/sh") (which "sh"))) @@ -522,12 +456,69 @@ implementation techniques and as an expository tool.") (("/bin/cp") (which "cp")) (("/bin/echo") (which "echo"))) (substitute* "makefiles/installsh" - (("/bin/true") (which "true"))))))) + (("/bin/true") (which "true")))) + #t)) + (add-before 'configure 'pre-configure-minimal + (lambda* (#:key inputs #:allow-other-keys) + (chdir "src") + #t)) + (add-after 'build 'patch-config.rktd-lib-search-dirs + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; We do this between the `build` and `install` phases + ;; so that we have racket to read and write the hash table, + ;; but it comes before `raco setup`, when foreign libraries + ;; are needed to build the documentation. + (define out (assoc-ref outputs "out")) + (apply invoke + "./cs/c/racketcs" + "-e" + ,(format #f + "~s" + '(let* ((args + (vector->list + (current-command-line-arguments))) + (file (car args)) + (extra-lib-search-dirs (cdr args))) + (write-to-file + (hash-update + (file->value file) + 'lib-search-dirs + (lambda (dirs) + (append dirs extra-lib-search-dirs)) + null) + #:exists 'truncate/replace + file))) + "--" + "../etc/config.rktd" + (filter-map (lambda (lib) + (cond + ((assoc-ref inputs lib) + => (lambda (pth) + (string-append pth "/lib"))) + (else + #f))) + '("cairo" + "fontconfig" + "glib" + "glu" + "gmp" + "gtk+" + "libjpeg" + "libpng" + "libx11" + "mesa" + "mpfr" + "openssl" + "pango" + "sqlite" + "unixodbc" + "libedit"))) + #t))) ;; XXX: how to run them? #:tests? #f)) (inputs - `(;; Hardcode dynamically loaded libraries for better functionality. - ;; sqlite and libraries for `racket/draw' are needed to build the doc. + `(;; sqlite and libraries for `racket/draw' are needed to build the doc. + ("sh" ,bash-minimal) ("zlib" ,zlib) ("zlib:static" ,zlib "static") ("lz4" ,lz4) @@ -567,29 +558,21 @@ of languages such as Typed Racket, R5RS and R6RS Scheme, and Datalog.") (inherit racket) (name "racket-minimal") (version (package-version racket)) - (source (origin - (method url-fetch) - (uri (list (string-append "https://mirror.racket-lang.org/installers/" - version "/racket-minimal-src.tgz") - ;; this mirror seems to have broken HTTPS: - (string-append - "http://mirror.informatik.uni-tuebingen.de/mirror/racket/" - version "/racket-minimal-src.tgz"))) - (sha256 - (base32 - "0mwyffw4gcci8wmzxa3j28h03h0gsz55aard8qrk3lri8r2xyg21")) - (patches (search-patches - "racket-store-checksum-override.patch")))) + (source + (origin + (inherit (package-source racket)) + (uri (list (string-append "https://mirror.racket-lang.org/installers/" + version "/racket-minimal-src.tgz") + ;; this mirror seems to have broken HTTPS: + (string-append + "http://mirror.informatik.uni-tuebingen.de/mirror/racket/" + version "/racket-minimal-src.tgz"))) + (sha256 "0mwyffw4gcci8wmzxa3j28h03h0gsz55aard8qrk3lri8r2xyg21"))) (synopsis "Racket without bundled packages such as Dr. Racket") - (arguments - (substitute-keyword-arguments (package-arguments racket) - ((#:phases phases) - `(modify-phases ,phases - ;; Delete fix that applies to files not included in the minimal package. - (delete 'pre-configure))))) (inputs `(("openssl" ,openssl) ("sqlite" ,sqlite) + ("sh" ,bash-minimal) ("zlib" ,zlib) ("zlib:static" ,zlib "static") ("lz4" ,lz4) diff --git a/gnu/packages/scsi.scm b/gnu/packages/scsi.scm index 803f49931e..4c3bfd7e33 100644 --- a/gnu/packages/scsi.scm +++ b/gnu/packages/scsi.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 Chris Marusich <cmmarusich@gmail.com> -;;; Copyright © 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -27,14 +27,14 @@ (define-public sg3-utils (package (name "sg3-utils") - (version "1.45") + (version "1.46") (source (origin (method url-fetch) (uri (string-append "http://sg.danny.cz/sg/p/sg3_utils-" version ".tar.xz")) (sha256 (base32 - "1vmjb17y33a73sv7jg8fzs6bhr7yh2k9sba81sjiyf1pvi3vbnn7")))) + "185rlxppnsmi6q7garfhglmw31gji2ff24xg2yjk3klk1fqnihjr")))) (build-system gnu-build-system) (home-page "http://sg.danny.cz/sg/sg3_utils.html") (synopsis "SCSI device utilities") diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index d458747872..0d603ad360 100644 --- a/gnu/packages/search.scm +++ b/gnu/packages/search.scm @@ -420,14 +420,14 @@ bibliographic data and simple document and bibtex retrieval.") (define-public ugrep (package (name "ugrep") - (version "3.1.4") + (version "3.1.11") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/Genivia/ugrep") (commit (string-append "v" version)))) (sha256 - (base32 "1ydnpdhn1mp2pnbqzvwabrp573626k89kbv97fax6y1bz2pamrg4")) + (base32 "1g3sxnrcaz1jxwa8nwrxpr63g4y0ha5zcf10053ciy9wjh6wqs1w")) (file-name (string-append name "-" version "-checkout")) (modules '((guix build utils))) (snippet @@ -446,13 +446,13 @@ bibliographic data and simple document and bibtex retrieval.") ("pcre2" ,pcre2) ("zlib" ,zlib))) (arguments - `(#:tests? #f ;; No script for re-building the binary test input-files + `(#:tests? #f ; no way to rebuild the binary input files #:test-target "test" #:phases (modify-phases %standard-phases (add-before 'check 'check-setup (lambda _ - ;; unpatch shepengs in tests + ;; Unpatch shebangs in tests. (substitute* '("tests/Hello.bat" "tests/Hello.sh") (("#!/gnu/store/.*/bin/sh") "#!/bin/sh"))))))) diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm index 6cd2f861b5..44ffbfc589 100644 --- a/gnu/packages/shells.scm +++ b/gnu/packages/shells.scm @@ -836,14 +836,14 @@ Shell (pdksh).") (define-public oil (package (name "oil") - (version "0.8.8") + (version "0.8.9") (source (origin (method url-fetch) (uri (string-append "https://www.oilshell.org/download/oil-" version ".tar.gz")) (sha256 - (base32 "1g3xk160x9k5smfc9k8nnxcj7w1nacmnhnpmm72am9rjp1vpv9h1")))) + (base32 "080lsx7hyjhny3jzscwr152vr0g9s3c2iqg3vrpgsbk8vv7vw5l7")))) (build-system gnu-build-system) (arguments `(#:strip-binaries? #f ; strip breaks the binary @@ -864,7 +864,8 @@ Shell (pdksh).") (lambda _ (let* ((oil "_bin/oil.ovm")) (invoke/quiet oil "osh" "-c" "echo hi") - (invoke/quiet oil "osh" "-n" "configure"))))))) + (invoke/quiet oil "osh" "-n" "configure") + #t)))))) (inputs `(("readline" ,readline))) (home-page "https://www.oilshell.org") @@ -951,7 +952,7 @@ files and text.") (define-public nushell (package (name "nushell") - (version "0.28.0") + (version "0.29.0") (source (origin (method git-fetch) @@ -960,7 +961,7 @@ files and text.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0kbynyk4c0r2qi78mdchx6d0d0c7phz2sxj5cqwsz4gjziibhr7j")))) + (base32 "0x7r8ipvypf6py2h03pdqr8pal6vyp6mskvss1rr8f0bcy3gr725")))) (build-system cargo-build-system) (arguments `(#:rust ,rust-1.47 @@ -972,38 +973,39 @@ files and text.") ("rust-futures" ,rust-futures-0.3) ("rust-itertools" ,rust-itertools-0.10) ("rust-log" ,rust-log-0.4) - ("rust-nu-cli" ,rust-nu-cli-0.28) - ("rust-nu-command" ,rust-nu-command-0.28) - ("rust-nu-data" ,rust-nu-data-0.28) - ("rust-nu-engine" ,rust-nu-engine-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-parser" ,rust-nu-parser-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) - ("rust-nu-plugin-binaryview" ,rust-nu-plugin-binaryview-0.28) - ("rust-nu-plugin-chart" ,rust-nu-plugin-chart-0.28) - ("rust-nu-plugin-fetch" ,rust-nu-plugin-fetch-0.28) - ("rust-nu-plugin-from-bson" ,rust-nu-plugin-from-bson-0.28) - ("rust-nu-plugin-from-sqlite" ,rust-nu-plugin-from-sqlite-0.28) - ("rust-nu-plugin-inc" ,rust-nu-plugin-inc-0.28) - ("rust-nu-plugin-match" ,rust-nu-plugin-match-0.28) - ("rust-nu-plugin-post" ,rust-nu-plugin-post-0.28) - ("rust-nu-plugin-ps" ,rust-nu-plugin-ps-0.28) - ("rust-nu-plugin-s3" ,rust-nu-plugin-s3-0.28) - ("rust-nu-plugin-selector" ,rust-nu-plugin-selector-0.28) - ("rust-nu-plugin-start" ,rust-nu-plugin-start-0.28) - ("rust-nu-plugin-sys" ,rust-nu-plugin-sys-0.28) - ("rust-nu-plugin-textview" ,rust-nu-plugin-textview-0.28) - ("rust-nu-plugin-to-bson" ,rust-nu-plugin-to-bson-0.28) - ("rust-nu-plugin-to-sqlite" ,rust-nu-plugin-to-sqlite-0.28) - ("rust-nu-plugin-tree" ,rust-nu-plugin-tree-0.28) - ("rust-nu-plugin-xpath" ,rust-nu-plugin-xpath-0.28) + ("rust-nu-cli" ,rust-nu-cli-0.29) + ("rust-nu-command" ,rust-nu-command-0.29) + ("rust-nu-data" ,rust-nu-data-0.29) + ("rust-nu-engine" ,rust-nu-engine-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-parser" ,rust-nu-parser-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) + ("rust-nu-plugin-binaryview" ,rust-nu-plugin-binaryview-0.29) + ("rust-nu-plugin-chart" ,rust-nu-plugin-chart-0.29) + ("rust-nu-plugin-fetch" ,rust-nu-plugin-fetch-0.29) + ("rust-nu-plugin-from-bson" ,rust-nu-plugin-from-bson-0.29) + ("rust-nu-plugin-from-sqlite" ,rust-nu-plugin-from-sqlite-0.29) + ("rust-nu-plugin-inc" ,rust-nu-plugin-inc-0.29) + ("rust-nu-plugin-match" ,rust-nu-plugin-match-0.29) + ("rust-nu-plugin-post" ,rust-nu-plugin-post-0.29) + ("rust-nu-plugin-ps" ,rust-nu-plugin-ps-0.29) + ("rust-nu-plugin-s3" ,rust-nu-plugin-s3-0.29) + ("rust-nu-plugin-selector" ,rust-nu-plugin-selector-0.29) + ("rust-nu-plugin-start" ,rust-nu-plugin-start-0.29) + ("rust-nu-plugin-sys" ,rust-nu-plugin-sys-0.29) + ("rust-nu-plugin-textview" ,rust-nu-plugin-textview-0.29) + ("rust-nu-plugin-to-bson" ,rust-nu-plugin-to-bson-0.29) + ("rust-nu-plugin-to-sqlite" ,rust-nu-plugin-to-sqlite-0.29) + ("rust-nu-plugin-tree" ,rust-nu-plugin-tree-0.29) + ("rust-nu-plugin-xpath" ,rust-nu-plugin-xpath-0.29) ("rust-pretty-env-logger" ,rust-pretty-env-logger-0.4)) #:cargo-development-inputs (("rust-dunce" ,rust-dunce-1) - ("rust-nu-test-support" ,rust-nu-test-support-0.28) + ("rust-hamcrest2" ,rust-hamcrest2-0.3) + ("rust-nu-test-support" ,rust-nu-test-support-0.29) ("rust-serial-test" ,rust-serial-test-0.5)))) (native-inputs `(("pkg-config" ,pkg-config) @@ -1027,17 +1029,17 @@ directory. These values can be piped through a series of steps, in a series of commands called a ``pipeline''.") (license license:expat))) -(define-public rust-nu-ansi-term-0.28 +(define-public rust-nu-ansi-term-0.29 (package (name "rust-nu-ansi-term") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-ansi-term" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0j4ybp1bmlj9lakrp21i180c26x0i9ird08xshsr6607g8nvc73f")))) + (base32 "0zlcma4kg6rsfp5sgfp3yy717bdrn9nq32rdi2nabpwg3qa9mmkb")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -1051,23 +1053,24 @@ of commands called a ``pipeline''.") underline).") (license license:expat))) -(define-public rust-nu-cli-0.28 +(define-public rust-nu-cli-0.29 (package (name "rust-nu-cli") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-cli" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0wz3n4b7sz5zynwhs2gn11w1b9cji231f613r23j64a8y26hdzhn")))) + (base32 "0ya95r54k59h0gyz2wgj8y2lhddnk3aw7ww1npzcbfsy1xi1zvi5")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-arboard" ,rust-arboard-1) - ("rust-async-recursion" ,rust-async-recursion-0.3) + ("rust-async-recursion" + ,rust-async-recursion-0.3) ("rust-async-trait" ,rust-async-trait-0.1) ("rust-base64" ,rust-base64-0.13) ("rust-bigdecimal" ,rust-bigdecimal-0.2) @@ -1077,11 +1080,13 @@ underline).") ("rust-chrono" ,rust-chrono-0.4) ("rust-chrono-tz" ,rust-chrono-tz-0.5) ("rust-clap" ,rust-clap-2) - ("rust-codespan-reporting" ,rust-codespan-reporting-0.11) + ("rust-codespan-reporting" + ,rust-codespan-reporting-0.11) ("rust-csv" ,rust-csv-1) ("rust-ctrlc" ,rust-ctrlc-3) ("rust-derive-new" ,rust-derive-new-0.5) - ("rust-directories-next" ,rust-directories-next-2) + ("rust-directories-next" + ,rust-directories-next-2) ("rust-dirs-next" ,rust-dirs-next-2) ("rust-dtparse" ,rust-dtparse-1) ("rust-dunce" ,rust-dunce-1) @@ -1103,20 +1108,21 @@ underline).") ("rust-lazy-static" ,rust-lazy-static-1) ("rust-log" ,rust-log-0.4) ("rust-meval" ,rust-meval-0.2) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-command" ,rust-nu-command-0.28) - ("rust-nu-data" ,rust-nu-data-0.28) - ("rust-nu-engine" ,rust-nu-engine-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-json" ,rust-nu-json-0.28) - ("rust-nu-parser" ,rust-nu-parser-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-stream" ,rust-nu-stream-0.28) - ("rust-nu-table" ,rust-nu-table-0.28) - ("rust-nu-test-support" ,rust-nu-test-support-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-command" ,rust-nu-command-0.29) + ("rust-nu-data" ,rust-nu-data-0.29) + ("rust-nu-engine" ,rust-nu-engine-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-json" ,rust-nu-json-0.29) + ("rust-nu-parser" ,rust-nu-parser-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-stream" ,rust-nu-stream-0.29) + ("rust-nu-table" ,rust-nu-table-0.29) + ("rust-nu-test-support" + ,rust-nu-test-support-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-num-format" ,rust-num-format-0.4) ("rust-num-traits" ,rust-num-traits-0.2) @@ -1124,28 +1130,31 @@ underline).") ("rust-pin-utils" ,rust-pin-utils-0.1) ("rust-pretty-hex" ,rust-pretty-hex-0.2) ("rust-ptree" ,rust-ptree-0.3) - ("rust-query-interface" ,rust-query-interface-0.3) - ("rust-quick-xml" ,rust-quick-xml-0.21) + ("rust-query-interface" + ,rust-query-interface-0.3) ("rust-quickcheck" ,rust-quickcheck-1) ("rust-quickcheck-macros" ,rust-quickcheck-macros-1) + ("rust-quick-xml" ,rust-quick-xml-0.21) ("rust-rand" ,rust-rand-0.8) ("rust-rayon" ,rust-rayon-1) ("rust-regex" ,rust-regex-1) ("rust-roxmltree" ,rust-roxmltree-0.14) ("rust-rusqlite" ,rust-rusqlite-0.24) ("rust-rust-embed" ,rust-rust-embed-5) - ("rust-rustyline" ,rust-rustyline-6) + ("rust-rustyline" ,rust-rustyline-8) ("rust-serde" ,rust-serde-1) ("rust-serde-bytes" ,rust-serde-bytes-0.11) ("rust-serde-ini" ,rust-serde-ini-0.2) ("rust-serde-json" ,rust-serde-json-1) - ("rust-serde-urlencoded" ,rust-serde-urlencoded-0.7) + ("rust-serde-urlencoded" + ,rust-serde-urlencoded-0.7) ("rust-serde-yaml" ,rust-serde-yaml-0.8) ("rust-sha2" ,rust-sha2-0.9) ("rust-shadow-rs" ,rust-shadow-rs-0.5) ("rust-shadow-rs" ,rust-shadow-rs-0.5) ("rust-shellexpand" ,rust-shellexpand-2) - ("rust-strip-ansi-escapes" ,rust-strip-ansi-escapes-0.1) + ("rust-strip-ansi-escapes" + ,rust-strip-ansi-escapes-0.1) ("rust-sxd-document" ,rust-sxd-document-0.3) ("rust-sxd-xpath" ,rust-sxd-xpath-0.4) ("rust-tempfile" ,rust-tempfile-3) @@ -1156,7 +1165,8 @@ underline).") ("rust-toml" ,rust-toml-0.5) ("rust-trash" ,rust-trash-1) ("rust-umask" ,rust-umask-1) - ("rust-unicode-segmentation" ,rust-unicode-segmentation-1) + ("rust-unicode-segmentation" + ,rust-unicode-segmentation-1) ("rust-url" ,rust-url-2) ("rust-users" ,rust-users-0.11) ("rust-uuid" ,rust-uuid-0.8) @@ -1167,23 +1177,24 @@ underline).") (description "CLI for nushell") (license license:expat))) -(define-public rust-nu-command-0.28 +(define-public rust-nu-command-0.29 (package (name "rust-nu-command") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-command" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0n6967w99m4zi52lfb57ycckammcc4im92yl5v2a2r6avnxrby1d")))) + (base32 "0nydc7vyrhfw99bimjs6061zgcqqi8hjjx20sq3qn2njgk1p730l")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-arboard" ,rust-arboard-1) - ("rust-async-recursion" ,rust-async-recursion-0.3) + ("rust-async-recursion" + ,rust-async-recursion-0.3) ("rust-async-trait" ,rust-async-trait-0.1) ("rust-base64" ,rust-base64-0.13) ("rust-bigdecimal" ,rust-bigdecimal-0.2) @@ -1193,12 +1204,14 @@ underline).") ("rust-chrono" ,rust-chrono-0.4) ("rust-chrono-tz" ,rust-chrono-tz-0.5) ("rust-clap" ,rust-clap-2) - ("rust-codespan-reporting" ,rust-codespan-reporting-0.11) + ("rust-codespan-reporting" + ,rust-codespan-reporting-0.11) ("rust-crossterm" ,rust-crossterm-0.19) ("rust-csv" ,rust-csv-1) ("rust-ctrlc" ,rust-ctrlc-3) ("rust-derive-new" ,rust-derive-new-0.5) - ("rust-directories-next" ,rust-directories-next-2) + ("rust-directories-next" + ,rust-directories-next-2) ("rust-dirs-next" ,rust-dirs-next-2) ("rust-dtparse" ,rust-dtparse-1) ("rust-dunce" ,rust-dunce-1) @@ -1219,21 +1232,23 @@ underline).") ("rust-itertools" ,rust-itertools-0.10) ("rust-lazy-static" ,rust-lazy-static-1) ("rust-log" ,rust-log-0.4) + ("rust-md5" ,rust-md5-0.7) ("rust-meval" ,rust-meval-0.2) ("rust-minus" ,rust-minus-3) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-data" ,rust-nu-data-0.28) - ("rust-nu-engine" ,rust-nu-engine-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-json" ,rust-nu-json-0.28) - ("rust-nu-parser" ,rust-nu-parser-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-stream" ,rust-nu-stream-0.28) - ("rust-nu-table" ,rust-nu-table-0.28) - ("rust-nu-test-support" ,rust-nu-test-support-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-data" ,rust-nu-data-0.29) + ("rust-nu-engine" ,rust-nu-engine-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-json" ,rust-nu-json-0.29) + ("rust-nu-parser" ,rust-nu-parser-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-stream" ,rust-nu-stream-0.29) + ("rust-nu-table" ,rust-nu-table-0.29) + ("rust-nu-test-support" + ,rust-nu-test-support-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-num-format" ,rust-num-format-0.4) ("rust-num-traits" ,rust-num-traits-0.2) @@ -1241,7 +1256,8 @@ underline).") ("rust-pin-utils" ,rust-pin-utils-0.1) ("rust-pretty-hex" ,rust-pretty-hex-0.2) ("rust-ptree" ,rust-ptree-0.3) - ("rust-query-interface" ,rust-query-interface-0.3) + ("rust-query-interface" + ,rust-query-interface-0.3) ("rust-quick-xml" ,rust-quick-xml-0.21) ("rust-rand" ,rust-rand-0.7) ("rust-rayon" ,rust-rayon-1) @@ -1249,17 +1265,19 @@ underline).") ("rust-roxmltree" ,rust-roxmltree-0.14) ("rust-rusqlite" ,rust-rusqlite-0.24) ("rust-rust-embed" ,rust-rust-embed-5) - ("rust-rustyline" ,rust-rustyline-7) + ("rust-rustyline" ,rust-rustyline-8) ("rust-serde" ,rust-serde-1) ("rust-serde-bytes" ,rust-serde-bytes-0.11) ("rust-serde-ini" ,rust-serde-ini-0.2) ("rust-serde-json" ,rust-serde-json-1) - ("rust-serde-urlencoded" ,rust-serde-urlencoded-0.7) + ("rust-serde-urlencoded" + ,rust-serde-urlencoded-0.7) ("rust-serde-yaml" ,rust-serde-yaml-0.8) ("rust-sha2" ,rust-sha2-0.9) ("rust-shadow-rs" ,rust-shadow-rs-0.5) ("rust-shellexpand" ,rust-shellexpand-2) - ("rust-strip-ansi-escapes" ,rust-strip-ansi-escapes-0.1) + ("rust-strip-ansi-escapes" + ,rust-strip-ansi-escapes-0.1) ("rust-sxd-document" ,rust-sxd-document-0.3) ("rust-sxd-xpath" ,rust-sxd-xpath-0.4) ("rust-tempfile" ,rust-tempfile-3) @@ -1270,7 +1288,8 @@ underline).") ("rust-toml" ,rust-toml-0.5) ("rust-trash" ,rust-trash-1) ("rust-umask" ,rust-umask-1) - ("rust-unicode-segmentation" ,rust-unicode-segmentation-1) + ("rust-unicode-segmentation" + ,rust-unicode-segmentation-1) ("rust-url" ,rust-url-2) ("rust-users" ,rust-users-0.11) ("rust-uuid" ,rust-uuid-0.8) @@ -1281,17 +1300,17 @@ underline).") (description "CLI for nushell") (license license:expat))) -(define-public rust-nu-data-0.28 +(define-public rust-nu-data-0.29 (package (name "rust-nu-data") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-data" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1gq0izbpaw4lp92ia3d3i14x649r1s6jscabm6xdi2qcxfb420kz")))) + (base32 "1niljv9vm42py1hmf8na03xbxb4vvypmrxk765ih9m2jg2zq9386")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -1300,22 +1319,25 @@ underline).") ("rust-byte-unit" ,rust-byte-unit-4) ("rust-chrono" ,rust-chrono-0.4) ("rust-derive-new" ,rust-derive-new-0.5) - ("rust-directories-next" ,rust-directories-next-2) + ("rust-directories-next" + ,rust-directories-next-2) ("rust-dirs-next" ,rust-dirs-next-2) ("rust-getset" ,rust-getset-0.1) ("rust-indexmap" ,rust-indexmap-1) ("rust-log" ,rust-log-0.4) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-table" ,rust-nu-table-0.28) - ("rust-nu-test-support" ,rust-nu-test-support-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-table" ,rust-nu-table-0.29) + ("rust-nu-test-support" + ,rust-nu-test-support-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-num-format" ,rust-num-format-0.4) ("rust-num-traits" ,rust-num-traits-0.2) - ("rust-query-interface" ,rust-query-interface-0.3) + ("rust-query-interface" + ,rust-query-interface-0.3) ("rust-serde" ,rust-serde-1) ("rust-toml" ,rust-toml-0.5) ("rust-users" ,rust-users-0.11)))) @@ -1324,24 +1346,27 @@ underline).") (description "CLI for nushell") (license license:expat))) -(define-public rust-nu-engine-0.28 +(define-public rust-nu-engine-0.29 (package (name "rust-nu-engine") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-engine" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "135bwcqvb8vhg417yzz90bj396f9hwpbqrdi9kw8fvmfz573z32s")))) + (base32 "1wz033zamlakpca5k2bgal2ykd5ia76g5fw3r5xzb6jb63q7xqhf")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-async-recursion" ,rust-async-recursion-0.3) + (("rust-async-recursion" + ,rust-async-recursion-0.3) ("rust-async-trait" ,rust-async-trait-0.1) ("rust-bytes" ,rust-bytes-0.5) + ("rust-codespan-reporting" + ,rust-codespan-reporting-0.11) ("rust-derive-new" ,rust-derive-new-0.5) ("rust-dirs-next" ,rust-dirs-next-2) ("rust-dunce" ,rust-dunce-1) @@ -1356,15 +1381,15 @@ underline).") ("rust-indexmap" ,rust-indexmap-1) ("rust-itertools" ,rust-itertools-0.10) ("rust-log" ,rust-log-0.4) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-data" ,rust-nu-data-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-parser" ,rust-nu-parser-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-stream" ,rust-nu-stream-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-data" ,rust-nu-data-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-parser" ,rust-nu-parser-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-stream" ,rust-nu-stream-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-parking-lot" ,rust-parking-lot-0.11) ("rust-rayon" ,rust-rayon-1) ("rust-serde" ,rust-serde-1) @@ -1374,34 +1399,36 @@ underline).") ("rust-termcolor" ,rust-termcolor-1) ("rust-trash" ,rust-trash-1) ("rust-umask" ,rust-umask-1) - ("rust-users" ,rust-users-0.11)))) + ("rust-users" ,rust-users-0.11) + ("rust-which" ,rust-which-4)))) (home-page "https://www.nushell.sh") (synopsis "Core commands for nushell") (description "Core commands for nushell") (license license:expat))) -(define-public rust-nu-errors-0.28 +(define-public rust-nu-errors-0.29 (package (name "rust-nu-errors") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-errors" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1zb5mmhzjh5cd27ry4z0vgw99ic9k3badxy3ywjk72nzpr5ra303")))) + (base32 "1xxdirdd57x20irn1z1p2987cyyi8l6k6shlblikjjf97d8kjk0n")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bigdecimal" ,rust-bigdecimal-0.2) - ("rust-codespan-reporting" ,rust-codespan-reporting-0.11) + ("rust-codespan-reporting" + ,rust-codespan-reporting-0.11) ("rust-derive-new" ,rust-derive-new-0.5) ("rust-getset" ,rust-getset-0.1) ("rust-glob" ,rust-glob-0.3) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-serde" ,rust-serde-1) @@ -1413,23 +1440,24 @@ underline).") (description "Core error subsystem for Nushell") (license license:expat))) -(define-public rust-nu-json-0.28 +(define-public rust-nu-json-0.29 (package (name "rust-nu-json") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-json" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "02w1lp7mp1fg7rf5zpdzllvsmd0jlgmig50xxag6a901ic85ddr7")))) + (base32 "1c1xj96gmyznqys3mxgnir4jf88npg4jkcwh9xa420agb03n9gzh")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-lazy-static" ,rust-lazy-static-1) - ("rust-linked-hash-map" ,rust-linked-hash-map-0.5) + ("rust-linked-hash-map" + ,rust-linked-hash-map-0.5) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-regex" ,rust-regex-1) ("rust-serde" ,rust-serde-1)))) @@ -1438,33 +1466,36 @@ underline).") (description "This package is a fork of @code{serde-hjson}.") (license license:expat))) -(define-public rust-nu-parser-0.28 +(define-public rust-nu-parser-0.29 (package (name "rust-nu-parser") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-parser" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0sixgfj7nsg66gmsqchydkqbhf3dzg5igvcri7dz6qdadi578wb5")))) + (base32 "1cmqx4gw7xg6ag58y7pq94prwkagc40wcrxbk2vzqj206h97xvmi")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bigdecimal" ,rust-bigdecimal-0.2) - ("rust-codespan-reporting" ,rust-codespan-reporting-0.11) + ("rust-codespan-reporting" + ,rust-codespan-reporting-0.11) ("rust-derive-new" ,rust-derive-new-0.5) - ("rust-derive-is-enum-variant" ,rust-derive-is-enum-variant-0.1) + ("rust-derive-is-enum-variant" + ,rust-derive-is-enum-variant-0.1) ("rust-dunce" ,rust-dunce-1) ("rust-indexmap" ,rust-indexmap-1) ("rust-itertools" ,rust-itertools-0.10) ("rust-log" ,rust-log-0.4) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-test-support" ,rust-nu-test-support-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-test-support" + ,rust-nu-test-support-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-serde" ,rust-serde-1) @@ -1475,10 +1506,10 @@ underline).") (description "Nushell parser") (license license:expat))) -(define-public rust-nu-plugin-0.28 +(define-public rust-nu-plugin-0.29 (package (name "rust-nu-plugin") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) @@ -1486,19 +1517,19 @@ underline).") (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1bkxkffcywaam8r55v8ciq42mgimgxzl4x8vb5qzx49a5gjb1831")))) + (base32 "03qqvh4jhpzwb1mh4f8pz2m88sa825giz5g7lr2l96nb0qfya19j")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bigdecimal" ,rust-bigdecimal-0.2) ("rust-indexmap" ,rust-indexmap-1) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-nu-test-support" - ,rust-nu-test-support-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ,rust-nu-test-support-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-serde" ,rust-serde-1) ("rust-serde-json" ,rust-serde-json-1)))) @@ -1507,17 +1538,17 @@ underline).") (description "Nushell Plugin") (license license:expat))) -(define-public rust-nu-plugin-binaryview-0.28 +(define-public rust-nu-plugin-binaryview-0.29 (package (name "rust-nu-plugin-binaryview") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_binaryview" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "055pc3idf1jsrks0hpx55vazaivxdjfncvbqjjsp89dk1011a3yp")))) + (base32 "0x7g9lncglbpdjxk1r47k49ha9yir03znis6zs7i25qwsb2sgynz")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -1525,11 +1556,11 @@ underline).") (("rust-crossterm" ,rust-crossterm-0.19) ("rust-image" ,rust-image-0.22) ("rust-neso" ,rust-neso-0.5) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-pretty-hex" ,rust-pretty-hex-0.2) ("rust-rawkey" ,rust-rawkey-0.1)))) (home-page "https://www.nushell.sh") @@ -1538,29 +1569,29 @@ underline).") "This package provides a binary viewer plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-chart-0.28 +(define-public rust-nu-plugin-chart-0.29 (package (name "rust-nu-plugin-chart") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_chart" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "114kg6vspympi2fr14sgvwnlinwa7s2vwv8f9a9p1kwqg4qa281s")))) + (base32 "1b4zqnm788728jzqxcipik4x3lgj8yf0cjpxznbb10bgyfdp0jxk")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-crossterm" ,rust-crossterm-0.19) - ("rust-nu-cli" ,rust-nu-cli-0.28) - ("rust-nu-data" ,rust-nu-data-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-cli" ,rust-nu-cli-0.29) + ("rust-nu-data" ,rust-nu-data-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-tui" ,rust-tui-0.14)))) (home-page "https://www.nushell.sh") (synopsis "Plugin to display charts") @@ -1568,17 +1599,17 @@ underline).") "This package provides a plugin to display charts in Nushell.") (license license:expat))) -(define-public rust-nu-plugin-fetch-0.28 +(define-public rust-nu-plugin-fetch-0.29 (package (name "rust-nu-plugin-fetch") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_fetch" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1v7pc58m8gi5zscvyviy8j5zbn30hxqlb37c0grgda7635vqhq31")))) + (base32 "086z2a2fmi4v95kg6bgzp1ylilbbflxnf242vnkmw6ys5gs8g4dy")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -1586,10 +1617,10 @@ underline).") (("rust-base64" ,rust-base64-0.13) ("rust-futures" ,rust-futures-0.3) ("rust-mime" ,rust-mime-0.3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-surf" ,rust-surf-2) ("rust-url" ,rust-url-2)))) (home-page "https://www.nushell.sh") @@ -1597,28 +1628,28 @@ underline).") (description "This package provides a URL fetch plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-from-bson-0.28 +(define-public rust-nu-plugin-from-bson-0.29 (package (name "rust-nu-plugin-from-bson") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_from_bson" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "13k11dh2pc48181qcbqwwgwwqh5d2g99p0rq4ly75l5jwyyazi73")))) + (base32 "02932wzrqrg4777cm1lpncig9cxn7s80fmlrkavrkw9dh2lnbbms")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bigdecimal" ,rust-bigdecimal-0.2) ("rust-bson" ,rust-bson-0.14) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-traits" ,rust-num-traits-0.2)))) (home-page "https://www.nushell.sh") (synopsis "Converter plugin to the bson format for Nushell") @@ -1627,27 +1658,27 @@ underline).") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-from-sqlite-0.28 +(define-public rust-nu-plugin-from-sqlite-0.29 (package (name "rust-nu-plugin-from-sqlite") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_from_sqlite" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0mpaz3vn7zf1ijccfd9rgrzl0fr3fci6j16w7a81x6dh7pqavxgn")))) + (base32 "1mnavx7pa5isic2rnrxd8462axh826rimscjpjxq4nk77wkzp5s8")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bigdecimal" ,rust-bigdecimal-0.2) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-rusqlite" ,rust-rusqlite-0.24) ("rust-tempfile" ,rust-tempfile-3)))) @@ -1658,28 +1689,28 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-inc-0.28 +(define-public rust-nu-plugin-inc-0.29 (package (name "rust-nu-plugin-inc") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_inc" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1dbayv8gcjpz46xgvh9b1pka2ygyhyalk1xzh43cvaccqn4qafrb")))) + (base32 "0w0dmqa6rv12whpmsvli5nb7pnazrhdp08x2fzrabz60rq1qsfx9")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + (("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-nu-test-support" - ,rust-nu-test-support-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ,rust-nu-test-support-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-semver" ,rust-semver-0.11)))) (home-page "https://www.nushell.sh") (synopsis "Version incrementer plugin for Nushell") @@ -1688,25 +1719,25 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-match-0.28 +(define-public rust-nu-plugin-match-0.29 (package (name "rust-nu-plugin-match") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_match" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1d19hwrrmbwxx3nn7gjs2wvzf6wfhdai9jsq35n7bgjx2qyip0ma")))) + (base32 "0hmxhd3z7p88xg5g75kljl0g6rp5k22ff0k9f2a6j9j7y3rrdlmb")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + (("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-regex" ,rust-regex-1)))) (home-page "https://www.nushell.sh") (synopsis "Regex match plugin for Nushell") @@ -1714,27 +1745,27 @@ Nushell.") "This package provides a regex match plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-post-0.28 +(define-public rust-nu-plugin-post-0.29 (package (name "rust-nu-plugin-post") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_post" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1jha85gl422p9knr0m4xdx353nmm00zrj5yh9w2gdyzs6hbzf80q")))) + (base32 "1d2198ks2cw6phg1hdsz75rqh5l49whcsl5hl21g86y2j5sl0hpd")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-base64" ,rust-base64-0.13) ("rust-futures" ,rust-futures-0.3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-serde-json" ,rust-serde-json-1) ("rust-surf" ,rust-surf-1) @@ -1744,27 +1775,27 @@ Nushell.") (description "This package is an HTTP POST plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-ps-0.28 +(define-public rust-nu-plugin-ps-0.29 (package (name "rust-nu-plugin-ps") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_ps" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0akgz7wi85ny2cfkcs9bn4hc97d4wdh9ayrzd6zasmird5kl1lv8")))) + (base32 "00dy60fnii1iifv0rh1xm77jn37l068np46fp3izbsbq642vzf7m")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-futures" ,rust-futures-0.3) ("rust-futures-timer" ,rust-futures-timer-3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-sysinfo" ,rust-sysinfo-0.16)))) (home-page "https://www.nushell.sh") @@ -1773,80 +1804,80 @@ Nushell.") "This package provides a process list plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-s3-0.28 +(define-public rust-nu-plugin-s3-0.29 (package (name "rust-nu-plugin-s3") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_s3" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "02b71ljsi7z2nbpm9djaxvdg7ql6xn0mqibpnzql0d39wfb0bxc2")))) + (base32 "00856l98gmmnv5bfg1vd6mqyk0zpkdrd1xgxqfi2c9nmsy2b1qfa")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-futures" ,rust-futures-0.3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-s3handler" ,rust-s3handler-0.6)))) (home-page "https://www.nushell.sh") (synopsis "S3 plugin for Nushell") (description "This package is an S3 plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-selector-0.28 +(define-public rust-nu-plugin-selector-0.29 (package (name "rust-nu-plugin-selector") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_selector" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0g1sjlvylclhhp41h6xx6vaa10478albjgh3n7kg3p0s6i8db5a7")))) + (base32 "14hn8plcax4kljq5kw96881pngs7w2gy11k3hs1pmaxhr0bi6c8h")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-nipper" ,rust-nipper-0.1) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28)))) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29)))) (home-page "https://www.nushell.sh") (synopsis "Web scraping using CSS selector") (description "This package provides web scraping using CSS selector.") (license license:expat))) -(define-public rust-nu-plugin-start-0.28 +(define-public rust-nu-plugin-start-0.29 (package (name "rust-nu-plugin-start") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_start" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1gqn6b1jpxcfx81c5c4yfs52gzxp9viyqj7hjs7fqvf5czi0bmz7")))) + (base32 "002cjbdh4zn81zhc5a0gklfxdjslqbcbp1wcx5ijzpch40c5dyzj")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-glob" ,rust-glob-0.3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-open" ,rust-open-1) ("rust-url" ,rust-url-2)))) (home-page "https://www.nushell.sh") @@ -1856,10 +1887,10 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-sys-0.28 +(define-public rust-nu-plugin-sys-0.29 (package (name "rust-nu-plugin-sys") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) @@ -1867,17 +1898,17 @@ Nushell.") (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "16igj4z9f7kfy3x71ki3vaqdx6064l3k718vqfpabffjkz9qpfp5")))) + (base32 "0s2jyaff4lngm1c5446618r5761d8dcbpsrs7p7vzp6g2dic1w69")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-futures" ,rust-futures-0.3) ("rust-futures-util" ,rust-futures-util-0.3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-sysinfo" ,rust-sysinfo-0.16)))) (home-page "https://www.nushell.sh") @@ -1885,28 +1916,28 @@ Nushell.") (description "This package provides a system info plugin for Nushell.") (license license:expat))) -(define-public rust-nu-plugin-textview-0.28 +(define-public rust-nu-plugin-textview-0.29 (package (name "rust-nu-plugin-textview") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_textview" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "07m3x9bkq1qliicnshgs6yi6q5fbl6d6gxcd60kqcavkvdknnf8m")))) + (base32 "19kwh6rn0xk340yk0w1r3dfm328s9jqln8hgfqw5m3lld1hh1a4v")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bat" ,rust-bat-0.17) - ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) - ("rust-nu-data" ,rust-nu-data-0.28) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) + ("rust-nu-data" ,rust-nu-data-0.29) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-term-size" ,rust-term-size-0.3) ("rust-url" ,rust-url-2)))) (home-page "https://www.nushell.sh") @@ -1915,27 +1946,27 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-to-bson-0.28 +(define-public rust-nu-plugin-to-bson-0.29 (package (name "rust-nu-plugin-to-bson") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_to_bson" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1rq2kwzrby8rh57gq4s4ljj4fgfgblrhjncjycpmkw2jzn7sa6xi")))) + (base32 "1j019frp663s511b7z9sz5vh77pvz0nn3w2asrk50xlyj5hfig55")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bson" ,rust-bson-0.14) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-traits" ,rust-num-traits-0.2)))) (home-page "https://www.nushell.sh") (synopsis "Converter plugin to the bson format for Nushell") @@ -1944,27 +1975,27 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-to-sqlite-0.28 +(define-public rust-nu-plugin-to-sqlite-0.29 (package (name "rust-nu-plugin-to-sqlite") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_to_sqlite" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0q07fv4i4rkzjna54mkcri5bfngqkkmpfj3vmiyzib0x84pvzfjf")))) + (base32 "0p86iyag0ci15i1nqyb74kp1lax9mgm73w5g3qkp2v97lihv12pf")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-hex" ,rust-hex-0.4) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-rusqlite" ,rust-rusqlite-0.24) ("rust-tempfile" ,rust-tempfile-3)))) @@ -1975,26 +2006,26 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-tree-0.28 +(define-public rust-nu-plugin-tree-0.29 (package (name "rust-nu-plugin-tree") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_tree" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0xifcyg0z025n6w0cqjnmrjcbynv437dkxpsxgbvm4iybj558590")))) + (base32 "096l86ci540v0aj9xrvwd4ccgg388kabz4rbg88nrpw0rlacrbc3")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-derive-new" ,rust-derive-new-0.5) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-ptree" ,rust-ptree-0.3)))) (home-page "https://www.nushell.sh") (synopsis "Tree viewer plugin for Nushell") @@ -2002,27 +2033,27 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-plugin-xpath-0.28 +(define-public rust-nu-plugin-xpath-0.29 (package (name "rust-nu-plugin-xpath") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu_plugin_xpath" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0mwajr07489kgv2yhxsk0laydf8m8p736npvkcbsjxaxydnv5a5a")))) + (base32 "0459awkffb2sydd2l5gbcx1kz466qkigb1bxn5ka208y9k5qz54v")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-bigdecimal" ,rust-bigdecimal-0.2) ("rust-indexmap" ,rust-indexmap-1) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-plugin" ,rust-nu-plugin-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-plugin" ,rust-nu-plugin-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-sxd-document" ,rust-sxd-document-0.3) ("rust-sxd-xpath" ,rust-sxd-xpath-0.4)))) (home-page "https://www.nushell.sh") @@ -2030,17 +2061,17 @@ Nushell.") (description "Traverses XML") (license license:expat))) -(define-public rust-nu-protocol-0.28 +(define-public rust-nu-protocol-0.29 (package (name "rust-nu-protocol") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-protocol" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0khpg2dnapyyimyq4ys1nfs1xzysxq2nb1ka2lmjfgdxrbwzrqnj")))) + (base32 "1iii3r37dcl7sf870qrzfkdc1iylbbkcycp1k5ifjvd5yxlkfpxx")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -2052,8 +2083,8 @@ Nushell.") ("rust-getset" ,rust-getset-0.1) ("rust-indexmap" ,rust-indexmap-1) ("rust-log" ,rust-log-0.4) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-num-integer" ,rust-num-integer-0.1) ("rust-num-traits" ,rust-num-traits-0.2) @@ -2067,17 +2098,17 @@ Nushell.") (description "Core values and protocols for Nushell") (license license:expat))) -(define-public rust-nu-source-0.28 +(define-public rust-nu-source-0.29 (package (name "rust-nu-source") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-source" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "13a590iff8bg6p38xs1hh5krmii6qz2w5k7ak57dyh3r3vbhvmmd")))) + (base32 "1m8phdw9iwawsq0ip4zn2w8ggjjr45z1ny2sgdb3h1y1awpnvdbq")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -2094,46 +2125,46 @@ Nushell.") Nushell.") (license license:expat))) -(define-public rust-nu-stream-0.28 +(define-public rust-nu-stream-0.29 (package (name "rust-nu-stream") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-stream" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "02dl4d9gzl2jhg71hfc04x9j4p29iwwcyvm6m9pihwfpwb3q2bhj")))) + (base32 "15zx16s4wb23316ih4wqnnpajh1qz5vckpzk3k41qqkmar1w4sah")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-futures" ,rust-futures-0.3) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28)))) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29)))) (home-page "https://www.nushell.sh") (synopsis "Nushell stream") (description "This package provides Nushell stream.") (license license:expat))) -(define-public rust-nu-table-0.28 +(define-public rust-nu-table-0.29 (package (name "rust-nu-table") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-table" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "15yd0wrl0y0rmjdvq2gmk97nxppdy5r424vy8v85gk876g82gi1s")))) + (base32 "1ihrr2406v5yjdfm699q6alx5bh49q8d04x1dzvn6qydgmf6r8z6")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-nu-ansi-term" ,rust-nu-ansi-term-0.28) + (("rust-nu-ansi-term" ,rust-nu-ansi-term-0.29) ("rust-regex" ,rust-regex-1) ("rust-unicode-width" ,rust-unicode-width-0.1)))) (home-page "https://www.nushell.sh") @@ -2141,17 +2172,17 @@ Nushell.") (description "Nushell table printing") (license license:expat))) -(define-public rust-nu-test-support-0.28 +(define-public rust-nu-test-support-0.29 (package (name "rust-nu-test-support") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (crate-uri "nu-test-support" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1qphsvr1wpn26ak5g4bj106csm8bia12srpv1dwy4zif42if57gm")))) + (base32 "0dlmhrskpdp82a6064srx1c4bqvfz66madx2i6cgxg56d7x38km6")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -2161,11 +2192,12 @@ Nushell.") ("rust-dunce" ,rust-dunce-1) ("rust-getset" ,rust-getset-0.1) ("rust-glob" ,rust-glob-0.3) + ("rust-hamcrest2" ,rust-hamcrest2-0.3) ("rust-indexmap" ,rust-indexmap-1) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) - ("rust-nu-value-ext" ,rust-nu-value-ext-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) + ("rust-nu-value-ext" ,rust-nu-value-ext-0.29) ("rust-num-bigint" ,rust-num-bigint-0.3) ("rust-tempfile" ,rust-tempfile-3)))) (home-page "https://www.nushell.sh") @@ -2174,10 +2206,10 @@ Nushell.") tests.") (license license:expat))) -(define-public rust-nu-value-ext-0.28 +(define-public rust-nu-value-ext-0.29 (package (name "rust-nu-value-ext") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) @@ -2185,16 +2217,16 @@ tests.") (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0kwx2s4gyss8gmj72kl0y2yzq5injwv9g9n53bal339b81dd7v90")))) + (base32 "1riq3xg6cqwrfb55bwva13m5dn4d7d71g2825dn7z2i96f6vylwi")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-indexmap" ,rust-indexmap-1) ("rust-itertools" ,rust-itertools-0.10) - ("rust-nu-errors" ,rust-nu-errors-0.28) - ("rust-nu-protocol" ,rust-nu-protocol-0.28) - ("rust-nu-source" ,rust-nu-source-0.28) + ("rust-nu-errors" ,rust-nu-errors-0.29) + ("rust-nu-protocol" ,rust-nu-protocol-0.29) + ("rust-nu-source" ,rust-nu-source-0.29) ("rust-num-traits" ,rust-num-traits-0.2)))) (home-page "https://www.nushell.sh") (synopsis "@code{Extension} traits for values in Nushell") diff --git a/gnu/packages/speech.scm b/gnu/packages/speech.scm index 687a3c10cf..093f6f957b 100644 --- a/gnu/packages/speech.scm +++ b/gnu/packages/speech.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2016 David Thompson <davet@gnu.org> ;;; Copyright © 2016, 2019, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017 Leo Famulari <leo@famulari.name> -;;; Copyright © 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> @@ -55,15 +55,16 @@ (define-public flite (package (name "flite") - (version "2.1") + (version "2.2") (source (origin - (method url-fetch) - (uri - (string-append "http://www.festvox.org/" name "/packed/" name - "-" version "/" name "-" version "-release.tar.bz2")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/festvox/flite") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "119b7l7pjb1l5raqq24p8rmhdqni49vjh2mgdryrfr575rm3yg67")))) + (base32 "1n0p81jzndzc1rzgm66kw9ls189ricy5v1ps11y0p2fk1p56kbjf")))) (build-system gnu-build-system) (arguments ;; XXX: diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index e85e4a0f7e..4aeed10f30 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014 David Thompson <davet@gnu.org> -;;; Copyright © 2015, 2017, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2017, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; Copyright © 2016, 2017, 2018, 2019 Marius Bakke <mbakke@fastmail.com> @@ -216,6 +216,28 @@ to code blocks.") @url{Devhelp,https://wiki.gnome.org/Apps/Devhelp} documents.") (license license:bsd-2))) +(define-public python-sphinxcontrib-github-alt + (package + (name "python-sphinxcontrib-github-alt") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sphinxcontrib_github_alt" version)) + (sha256 + (base32 + "1x9af78vamjjcdrrhiah3wg613jv7gm8yh9vvqfrmf4vam6mimyg")))) + (build-system python-build-system) + (propagated-inputs + `(("python-docutils" ,python-docutils) + ("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/jupyter/sphinxcontrib_github_alt") + (synopsis "Link to GitHub pages from Sphinx docs") + (description + "This package lets you link to GitHub issues, pull requests, commits and +users from Sphinx docs.") + (license license:bsd-2))) + (define-public python-sphinxcontrib-htmlhelp (package (name "python-sphinxcontrib-htmlhelp") diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm index c0e0bd87d8..97b0456004 100644 --- a/gnu/packages/ssh.scm +++ b/gnu/packages/ssh.scm @@ -403,48 +403,57 @@ libssh library.") (deprecated-package "guile3.0-ssh" guile-ssh)) (define-public corkscrew - (package - (name "corkscrew") - (version "2.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/patpadgett/corkscrew") - (commit (string-append "v" version)))) - (sha256 - (base32 "0g4pkczrc1zqpnxyyjwcjmyzdj5qqcpzwf1bm3965zdwp94bpppf")) - (file-name (git-file-name name version)))) - (build-system gnu-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'configure - ;; Replace configure phase as the ./configure script does not like - ;; CONFIG_SHELL and SHELL passed as parameters. - (lambda* (#:key outputs build target #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bash (which "bash")) - ;; Set --build and --host flags as the provided config.guess - ;; is not able to detect them. - (flags `(,(string-append "--prefix=" out) - ,(string-append "--build=" build) - ,(string-append "--host=" (or target build))))) - (setenv "CONFIG_SHELL" bash) - (apply invoke bash "./configure" flags)))) - (add-after 'install 'install-documentation - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (doc (string-append out "/share/doc/" ,name "-" ,version))) - (install-file "README.markdown" doc) - #t)))))) - (home-page "https://github.com/patpadgett/corkscrew") - (synopsis "SSH tunneling through HTTP(S) proxies") - (description - "Corkscrew tunnels SSH connections through most HTTP and HTTPS proxies. -Proxy authentication is only supported through the plain-text HTTP basic -authentication scheme.") - (license license:gpl2+))) + ;; The last 2.0 release hails from 2009. Use a fork (submitted upstream as + ;; <https://github.com/patpadgett/corkscrew/pull/5>) that adds now-essential + ;; IPv6 and TLS support. + (let ((revision "0") + (commit "268b71e88ee51fddceab96d665b327394f1feb12")) + (package + (name "corkscrew") + (version (git-version "2.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rtgill82/corkscrew") + (commit commit))) + (sha256 + (base32 "1rylbimlfig3ii4bqr4r058lkc43pqkxnxqpqdpm31blh3xs0dcw")) + (file-name (git-file-name name version)))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list "--enable-ssl") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'update-metadata + (lambda _ + (substitute* "configure.ac" + ;; Our version differs significantly. + (("2.0") (string-append ,version " (Guix)"))) + (substitute* "corkscrew.c" + ;; This domain's since been squat. + (("\\(agroman@agroman\\.net\\)") + (format #f "<~a>" ,(package-home-page this-package)))))) + (add-after 'install 'install-documentation + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/" ,name "-" ,version))) + (install-file "README.md" doc) + #t)))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("pkg-config" ,pkg-config))) + (inputs + `(("openssl" ,openssl))) + (home-page "https://github.com/patpadgett/corkscrew") + (synopsis "SSH tunneling through HTTP(S) proxies") + (description + "Corkscrew tunnels SSH connections through most HTTP and HTTPS proxies. +It supports proxy authentication through the HTTP basic authentication scheme +with optional @acronym{TLS, Transport-Level Security} to protect credentials.") + (license license:gpl2+)))) (define-public mosh (package diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 915eaeac18..e6ded2257b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -711,14 +711,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.2-9") + (version "3.2-10") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "1dkpdci2lvx141193wd69445y65w8k2pa89lc3l83i5jaj56svdn")))) + "19fg7mrrr6chbixq10kwwl5clry2y57v6zl24jlmxx2ylis0vjzd")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -1734,14 +1734,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1sm0fixfr3bkq18p804mfbfz9z5z801dhzkrpq0spr25jkhpf26l")))) + "025wqpmxdhzblb0pf58m3qh5h6bf5x8qvkf47vyl1cjsp13wz95b")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -2682,13 +2682,13 @@ vectors.") (define-public r-catools (package (name "r-catools") - (version "1.18.1") + (version "1.18.2") (source (origin (method url-fetch) (uri (cran-uri "caTools" version)) (sha256 (base32 - "1yf98x2gaf84y9m32xrg84g384zlfwsdw7wvywdljpgdpvzs9szz")))) + "14q2ry8gaszjl0m97qg62dxv5bpj6k02qwyi7q2lnxgcmwai3mkm")))) (properties `((upstream-name . "caTools"))) (build-system r-build-system) (propagated-inputs @@ -2843,13 +2843,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.4") + (version "2.2.5") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "050s7gv42v43d15yqj2sdrh82iikfpm32idfnw4nbjjjnlcg7wxf")))) + "14cxqh8j5v2rqs6yiargy1miycvx7xj47lppvpnnchi5plimlvyy")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -2917,13 +2917,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.99-0.5") + (version "3.99-0.6") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "19jkpnbjx2ij0h7rxi13sqnjnwsap6wywmd4gnhfnqpic1rrnlk0")))) + "0qibvacbfm7gl41ylway3vdyi1qbpa211d48rg3k5i30d48rbf58")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) @@ -3403,17 +3403,18 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.7-4") + (version "1.7-6") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "02935xcscjhb0jmnvh44hxlpjcgladrcr0gpz1jxq07m0qdqgaz6")))) + "0blfnv3m5k5xm9bfx1v5awvagqlhqaqpabrvzplf4244c3j259qa")))) (build-system r-build-system) (propagated-inputs - `(("r-class" ,r-class))) + `(("r-class" ,r-class) + ("r-proxy" ,r-proxy))) (home-page "https://cran.r-project.org/web/packages/e1071") (synopsis "Miscellaneous functions for probability theory") (description @@ -4143,14 +4144,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-8") + (version "1.1-10") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "198zpkz1gvw954ym8669svrk81yb49j6fyk5i6a7dw07z3snlmdn")))) + "1skxahq5jgqdsllpsavzrcpz8l0yj3mfzcf70as8d33jxbiaa4s4")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -5378,14 +5379,14 @@ first and second order derivatives.") (define-public r-sn (package (name "r-sn") - (version "1.6-2") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "sn" version)) (sha256 (base32 - "179xb7yb8br99aa5awm2yxsy0v5w1kdhv6a7ifaliz2y64677m1g")))) + "0sl8qzy9isy5fq8qxh1fg5285jzgy895nbgz8gdq5d0r6zdwrmmb")))) (build-system r-build-system) (propagated-inputs `(("r-mnormt" ,r-mnormt) diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm index eb6cb7b4e3..e800aebda7 100644 --- a/gnu/packages/syncthing.scm +++ b/gnu/packages/syncthing.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 Petter <petter@mykolab.ch> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Leo Famulari <leo@famulari.name> +;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Leo Famulari <leo@famulari.name> ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> @@ -44,7 +44,9 @@ (define-public syncthing (package (name "syncthing") - (version "1.5.0") + (version "1.15.1") + ; XXX After the go-build-system can use "Go modules", stop using bundled + ; dependenices for Syncthing. (source (origin (method url-fetch) (uri (string-append "https://github.com/syncthing/syncthing" @@ -52,68 +54,12 @@ "/syncthing-source-v" version ".tar.gz")) (sha256 (base32 - "1394b8y4nllihnjngc0kjpdy7pvyh6v1h09hkn8rdmwxpsdkqkjb")) - (modules '((guix build utils))) - ;; Delete bundled ("vendored") free software source code. - (snippet '(begin - (delete-file-recursively "vendor") - #t)))) + "04b90zwinl7frxrpjliq41mkbhpnkszmhdc5j2vbqwyhd82warxq")))) (build-system go-build-system) ;; The primary Syncthing executable goes to "out", while the auxiliary ;; server programs and utility tools go to "utils". This reduces the size ;; of "out" by ~80 MiB. (outputs '("out" "utils")) - ;; When updating Syncthing, check 'go.mod' in the source distribution to - ;; ensure we are using the correct versions of these dependencies. - (inputs - `(("go-github-com-jackpal-go-nat-pmp" - ,go-github-com-jackpal-go-nat-pmp) - ("go-github-com-bkaradzic-go-lz4" ,go-github-com-bkaradzic-go-lz4) - ("go-github-com-calmh-xdr" ,go-github-com-calmh-xdr) - ("go-github-com-chmduquesne-rollinghash" - ,go-github-com-chmduquesne-rollinghash) - ("go-github-com-gobwas-glob" ,go-github-com-gobwas-glob) - ("go-github-com-golang-groupcache-lru" - ,go-github-com-golang-groupcache-lru) - ("go-github-com-jackpal-gateway" ,go-github-com-jackpal-gateway) - ("go-github-com-kballard-go-shellquote" - ,go-github-com-kballard-go-shellquote) - ("go-github-com-lib-pq" ,go-github-com-lib-pq) - ("go-github-com-minio-sha256-simd" ,go-github-com-minio-sha256-simd) - ("go-github-com-oschwald-geoip2-golang" - ,go-github-com-oschwald-geoip2-golang) - ("go-github-com-pkg-errors" ,go-github-com-pkg-errors) - ("go-github-com-rcrowley-go-metrics" ,go-github-com-rcrowley-go-metrics) - ("go-github-com-sasha-s-go-deadlock" ,go-github-com-sasha-s-go-deadlock) - ("go-github-com-syncthing-notify" ,go-github-com-syncthing-notify) - ("go-github-com-syndtr-goleveldb" ,go-github-com-syndtr-goleveldb) - ("go-github-com-thejerf-suture" ,go-github-com-thejerf-suture) - ("go-golang-org-x-time" ,go-golang-org-x-time) - ("go-github-com-go-ldap-ldap" ,go-github-com-go-ldap-ldap) - ("go-github-com-gogo-protobuf" ,go-github-com-gogo-protobuf) - ("go-github-com-shirou-gopsutil" ,go-github-com-shirou-gopsutil) - ("go-github-com-prometheus-client-golang" - ,go-github-com-prometheus-client-golang) - ("go-golang-org-x-net" ,go-golang-org-x-net) - ("go-golang-org-x-text" ,go-golang-org-x-text) - ("go-github-com-audriusbutkevicius-recli" - ,go-github-com-audriusbutkevicius-recli) - ("go-github-com-urfave-cli" ,go-github-com-urfave-cli) - ("go-github-com-vitrun-qart" ,go-github-com-vitrun-qart) - ("go-github-com-mattn-go-isatty" ,go-github-com-mattn-go-isatty) - ("go-golang-org-x-crypto" ,go-golang-org-x-crypto) - ("go-github-com-flynn-archive-go-shlex" - ,go-github-com-flynn-archive-go-shlex) - ("go-github-com-getsentry-raven-go" ,go-github-com-getsentry-raven-go) - ("go-github-com-maruel-panicparse" ,go-github-com-maruel-panicparse) - ("go-github-com-ccding-go-stun" ,go-github-com-ccding-go-stun) - ("go-github-com-audriusbutkevicius-pfilter" ,go-github-com-audriusbutkevicius-pfilter) - ("go-github-com-lucas-clemente-quic-go" ,go-github-com-lucas-clemente-quic-go) - ("go-github-com-willf-bloom" ,go-github-com-willf-bloom) - - ;; For tests. - ("go-github-com-d4l3k-messagediff" ,go-github-com-d4l3k-messagediff))) - (arguments `(#:modules ((srfi srfi-26) ; for cut (guix build utils) @@ -136,8 +82,8 @@ ;; updater and to build the utilities is to "build all" and then ;; "build syncthing" again with -no-upgrade. ;; https://github.com/syncthing/syncthing/issues/6118 - (invoke "go" "run" "build.go" "build" "all") - (delete-file "syncthing") + (invoke "go" "run" "build.go") + (delete-file "bin/syncthing") (invoke "go" "run" "build.go" "-no-upgrade" "build" "syncthing")))) (replace 'check @@ -149,10 +95,10 @@ (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) (utils (assoc-ref outputs "utils"))) - (with-directory-excursion "src/github.com/syncthing/syncthing" - (install-file "syncthing" (string-append out "/bin")) + (with-directory-excursion "src/github.com/syncthing/syncthing/bin" + (install-file "../syncthing" (string-append out "/bin")) (for-each (cut install-file <> (string-append utils "/bin/")) - '("stcli" "stcompdirs" "stcrashreceiver" + '("stcompdirs" "stcrashreceiver" "stdisco" "stdiscosrv" "stevents" "stfileinfo" "stfinddevice" "stfindignored" "stgenfiles" "stindex" "strelaypoolsrv" "strelaysrv" "stsigtool" diff --git a/gnu/packages/tcl.scm b/gnu/packages/tcl.scm index 709b3dd603..55a95792cb 100644 --- a/gnu/packages/tcl.scm +++ b/gnu/packages/tcl.scm @@ -143,7 +143,7 @@ (description "[incr Tcl] is a widely used object-oriented system for Tcl. The name is a play on C++, and [incr Tcl] provides a similar object model, including -multiple inheritence and public and private classes and variables.") +multiple inheritance and public and private classes and variables.") (license license:public-domain))) (define-public expect diff --git a/gnu/packages/telegram.scm b/gnu/packages/telegram.scm index 82d1dc463c..e6bfe6c4f2 100644 --- a/gnu/packages/telegram.scm +++ b/gnu/packages/telegram.scm @@ -611,8 +611,8 @@ Telegram instant messenger.") #:include-regexp ("\\.h$"))) args)))))) (synopsis "Parse tl scheme to tlo") - (description "TL-Parser is a tl scheme to tlo file parser. It was formely -a part of telegram-cli, but now being maintained separately.") + (description "TL-Parser is a tl scheme to tlo file parser. It was +formerly a part of telegram-cli, but now being maintained separately.") (home-page "https://github.com/vysheng/tl-parser") (license license:gpl2+)))) diff --git a/gnu/packages/telephony.scm b/gnu/packages/telephony.scm index 5c8d247e68..af7148bf84 100644 --- a/gnu/packages/telephony.scm +++ b/gnu/packages/telephony.scm @@ -17,7 +17,7 @@ ;;; Copyright © 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> -;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2021 LibreMiami <packaging-guix@libremiami.org> ;;; @@ -723,7 +723,7 @@ your calls and messages.") (define-public pjproject (package (name "pjproject") - (version "2.10") + (version "2.11") (source (origin (method git-fetch) @@ -733,12 +733,8 @@ your calls and messages.") (file-name (git-file-name name version)) (sha256 (base32 - "1aklicpgwc88578k03i5d5cm5h8mfm7hmx8vfprchbmaa2p8f4z0")) + "1kn9g1x1vmh4130ghph8mldz5m89gsjs4vpdzlzm98m3808gk5an")) (modules '((guix build utils))) - ;; The patches upstream status can be tracked at: - ;; https://github.com/pjsip/pjproject/pull/2501. - (patches (search-patches "pjproject-correct-the-cflags-field.patch" - "pjproject-fix-pkg-config-ldflags.patch")) (snippet '(begin ;; Remove bundled libraries. @@ -746,8 +742,7 @@ your calls and messages.") (substitute* "aconfigure.ac" (("third_party/build/os-auto.mak") "")) (substitute* "Makefile" - (("third_party/build") "")) - #t)))) + (("third_party/build") "")))))) (build-system gnu-build-system) (outputs '("out" "debug" "static")) (arguments @@ -785,8 +780,7 @@ your calls and messages.") ;; Make all the files writable to prevent the following error: ;; "autom4te: cannot open aconfigure: Permission denied". (lambda _ - (for-each make-file-writable (find-files ".")) - #t)) + (for-each make-file-writable (find-files ".")))) (add-before 'build 'build-dep (lambda _ (invoke "make" "dep"))) ;; The check phases is moved after the install phase so to @@ -800,8 +794,7 @@ your calls and messages.") (with-directory-excursion out (for-each (lambda (f) (rename-file f (string-append s "/" (basename f)))) - (find-files "." "\\.a$"))) - #t))) + (find-files "." "\\.a$")))))) (add-after 'install 'check (assoc-ref %standard-phases 'check)) (add-before 'patch-source-shebangs 'autoconf @@ -844,8 +837,7 @@ your calls and messages.") ;; Disable the pjnath and pjsua tests, which require an actual ;; network and an actual sound card, respectively. (("pjnath-test pjmedia-test pjsip-test pjsua-test") - "pjmedia-test pjsip-test")) - #t))))) + "pjmedia-test pjsip-test"))))))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index 6a90ba0821..cdb0218acf 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -8188,3 +8188,280 @@ support packages. Others are cmbright, hvmath and kerkis.") (license (list license:silofl1.1 ;for Arev Sans license:lppl1.3a ;for TeX support files license:gpl2)))) ;for ams-mdbch.sty + +(define-public texlive-mathdesign + (package + (inherit (simple-texlive-package + "texlive-mathdesign" + (list "/doc/fonts/mathdesign/" + "/dvips/mathdesign/" + "/fonts/enc/dvips/mathdesign/" + "/fonts/map/dvips/mathdesign/" + "/fonts/tfm/public/mathdesign/" + "/fonts/type1/public/mathdesign/" + "/fonts/vf/public/mathdesign/" + "/tex/latex/mathdesign/") + (base32 + "0jcby2sd0l3ank2drxc0qcf5d1cwa8idzh4g91h4nxk8zrzxj8nr") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/mathdesign") + (synopsis "Mathematical fonts to fit with particular text fonts") + (description "The Math Design project offers free mathematical +fonts that match with existing text fonts. To date, three free font +families are available: Adobe Utopia, URW Garamond and Bitstream +Charter. Mathdesign covers the whole LaTeX glyph set including AMS +symbols. Both roman and bold versions of these symbols can be used. +Moreover, there is a choice between three greek fonts (two of them +created by the Greek Font Society).") + (license license:gpl2+))) + +(define-public texlive-bera + (package + (inherit (simple-texlive-package + "texlive-bera" + (list "/doc/fonts/bera/" + "/fonts/afm/public/bera/" + "/fonts/map/dvips/bera/" + "/fonts/tfm/public/bera/" + "/fonts/type1/public/bera/" + "/fonts/vf/public/bera/" + "/tex/latex/bera/") + (base32 + "1pkmhhr6ah44xhipjr7nianv03hr4w4bn45xcvp264yw6ymqzqwr") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/bera") + (synopsis "Bera fonts") + (description "The @code{bera} package contains the Bera Type 1 +fonts and files to use the fonts with LaTeX. Bera is a set of three +font families: Bera Serif (a slab-serif Roman), Bera Sans (a Frutiger +descendant) and Bera Mono (monospaced/typewriter). The Bera family is +a repackaging, for use with TeX, of the Bitstream Vera family.") + (license license:silofl1.1))) + +(define-public texlive-fourier + (package + (inherit (simple-texlive-package + "texlive-fourier" + (list "/doc/fonts/fourier/" + "/fonts/afm/public/fourier/" + "/fonts/map/dvips/fourier/" + "/fonts/tfm/public/fourier/" + "/fonts/type1/public/fourier/" + "/fonts/vf/public/fourier/" + "/tex/latex/fourier/") + (base32 + "1vs2xdx6f6hd01zlslx3y93g3dsa7k3yhqpnhgkizgjmz0r9ipz1") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/fourier") + (synopsis "Utopia fonts for LaTeX documents") + (description "Fourier-GUTenberg is a LaTeX typesetting system +which uses Adobe Utopia as its standard base font. Fourier-GUTenberg +provides all complementary typefaces needed to allow Utopia based TeX +typesetting including an extensive mathematics set and several other +symbols. The system is absolutely stand-alone; apart from Utopia and +Fourier no other typefaces are required. Utopia is a registered +trademark of Adobe Systems Incorporated.") + (license license:lppl))) + +(define-public texlive-utopia + (package + (inherit (simple-texlive-package + "texlive-utopia" + (list "/doc/fonts/utopia/" + "/fonts/afm/adobe/utopia/" + "/fonts/tfm/adobe/utopia/" + "/fonts/type1/adobe/utopia/" + "/fonts/vf/adobe/utopia/") + (base32 + "113wgkfz4z0ls2grxxfj17l42a1yv9r5ipcd0156xnfsrqvqzxfc") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/utopia") + (synopsis "Adobe Utopia fonts") + (description "The Adobe Standard Encoding set of the Utopia font +family, as contributed to the X Consortium. The set comprises upright +and italic shapes in medium and bold weights. Macro support and +matching maths fonts are provided by the @code{fourier} and +@code{mathdesign} font packages.") + (license (license:fsf-free + "http://mirrors.ctan.org/fonts/utopia/README")))) + +(define-public texlive-fontaxes + (package + (name "texlive-fontaxes") + (version "1.0e") + (source + (origin + (method svn-fetch) + (uri (texlive-ref "latex" "fontaxes")) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "19mhp9l7cjw0sbq55c9lz0l2pffkyhyir3i63jqynifjmglbgkl7")))) + (build-system texlive-build-system) + (arguments '(#:tex-directory "latex/fontaxes")) + (home-page "http://www.ctan.org/pkg/fontaxes") + (synopsis "Additional font axes for LaTeX") + (description "The @code{fontaxes} package adds several new font +axes on top of LaTeX's New Font Selection Scheme (NFSS). In +particular, it splits the shape axis into a primary and a secondary +shape axis and it adds three new axes to deal with the different +figure versions offered by many professional fonts.") + (license license:lppl1.3+))) + +(define-public texlive-mweights + (package + (inherit (simple-texlive-package + "texlive-mweights" + (list "/doc/latex/mweights/" + "/tex/latex/mweights/") + (base32 + "1k2xclk54q3xgn48hji23q52nivkzgwf0s30bmm6k83f7v57qv8h") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/mweights") + (synopsis "Support for multiple-weight font packages") + (description "Many font families available for use with LaTeX are +available at multiple weights. Many Type 1-oriented support packages +for such fonts re-define the standard @code{\\mddefault} or +@code{\\bfdefault} macros. This can create difficulties if the weight +desired for one font family is not available for another font family, +or if it differs from the weight desired for another font family. The +@code{mweights} package provides a solution to these difficulties.") + (license license:lppl))) + +(define-public texlive-cabin + (package + (inherit (simple-texlive-package + "texlive-cabin" + (list "/doc/fonts/cabin/" + "/fonts/enc/dvips/cabin/" + "/fonts/map/dvips/cabin/" + "/fonts/opentype/impallari/cabin/" + "/fonts/tfm/impallari/cabin/" + "/fonts/type1/impallari/cabin/" + "/fonts/vf/impallari/cabin/" + "/tex/latex/cabin/") + (base32 + "0dfq9gqch80iyvp58spmpmqfc9h61sjvnddm81ba0af1p8ag8sfg") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/cabin") + (synopsis "Humanist Sans Serif font with LaTeX support") + (description "Cabin is a humanist sans with four weights, true +italics and small capitals. According to its designer, Pablo +Impallari, Cabin was inspired by the typefaces of Edward Johnston and +Eric Gill. Cabin incorporates modern proportions, optical adjustments +and some elements of the geometric sans. @code{cabin.sty} supports +use of the font under LaTeX, pdfLaTeX, XeLaTeX and LuaLaTeX. It uses +the @code{mweights} package to manage the user's view of all those +font weights. An @code{sfdefault} option is provided to enable Cabin +as the default text font. The @code{fontaxes} package is required for +use with [pdf]LaTeX.") + (license (list license:silofl1.1 ;for Cabin + license:lppl)))) ;for support files + +(define-public texlive-newtx + (package + (inherit (simple-texlive-package + "texlive-newtx" + (list "/doc/fonts/newtx/" + "/fonts/afm/public/newtx/" + "/fonts/enc/dvips/newtx/" + "/fonts/map/dvips/newtx/" + "/fonts/opentype/public/newtx/" + "/fonts/tfm/public/newtx/" + "/fonts/type1/public/newtx/" + "/fonts/vf/public/newtx/" + "/tex/latex/newtx/") + (base32 + "0rqjj33m6xkhrjzjhf24kxdg61az5sqsbcl0m7xqkf4akqybn22d") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/newtx") + (synopsis "Repackaging of the TX fonts with improved metrics") + (description "The @code{newtx} bundle splits +@code{txfonts.sty} (from the TX fonts distribution) into two +independent packages, @code{newtxtext.sty} and @code{newtxmath.sty}, +each with fixes and enhancements. @code{newtxmath}'s metrics have +been re-evaluated to provide a less tight appearance and to provide a +@code{libertine} option that substitutes Libertine italic and Greek +letters for the existing math italic and Greek glyphs, making a +mathematics package that matches Libertine text quite well.") + (license license:lppl1.3))) + +(define-public texlive-xcharter + (package + (inherit (simple-texlive-package + "texlive-xcharter" + (list "/doc/fonts/xcharter/" + "/fonts/afm/public/xcharter/" + "/fonts/enc/dvips/xcharter/" + "/fonts/map/dvips/xcharter/" + "/fonts/opentype/public/xcharter/" + "/fonts/tfm/public/xcharter/" + "/fonts/type1/public/xcharter/" + "/fonts/vf/public/xcharter/" + "/tex/latex/xcharter/") + (base32 + "0krm4h53lw7h9jbmv5nc89fm4x7i8l574aig1l4mw8w3ziknwmi7") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/xcharter") + (synopsis "Extension of the Bitstream Charter fonts") + (description "@code{xcharter} repackages Bitstream Charter with an +extended set of features. The extension provides small caps, oldstyle +figures and superior figures in all four styles, accompanied by LaTeX +font support files. The fonts themselves are provided in both Adobe +Type 1 and OTF formats, with supporting files as necessary.") + (license (list (license:fsf-free + "http://mirrors.ctan.org/fonts/xcharter/README") + license:lppl1.3)))) + +(define-public texlive-ly1 + (package + (inherit (simple-texlive-package + "texlive-ly1" + (list "/doc/fonts/ly1/" + "/fonts/enc/dvips/ly1/" + "/fonts/map/dvips/ly1/" + "/fonts/tfm/adobe/ly1/" + "/fonts/vf/adobe/ly1/" + "/tex/latex/ly1/") + (base32 + "0wjyw0risgvrq97zfciglwy1f4msvfslln6pz0q8yzzx8wsv3zgq") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/ly1") + (synopsis "Support for LY1 LaTeX encoding") + (description "The legacy @emph{texnansi} (TeX and ANSI) encoding +is known in the LaTeX scheme of things as @emph{LY1} encoding. The +@code{ly1} bundle includes metrics and LaTeX macros to use the three +basic Adobe Type 1 fonts (Times, Helvetica and Courier) in LaTeX using +LY1 encoding.") + (license license:lppl1.0+))) + +(define-public texlive-kastrup + (package + (name "texlive-kastrup") + (version (number->string %texlive-revision)) + (source + (origin + (method svn-fetch) + (uri (texlive-ref "generic" "kastrup")) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1kkshc48brkq2nx3rlbv78a2130izykbf33ri1q2shqr8pjfmmq8")))) + (build-system texlive-build-system) + (arguments + '(#:tex-directory "generic/kastrup" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-generated-file + (lambda _ + (delete-file "binhex.drv") + #t))))) + (home-page "http://www.ctan.org/pkg/binhex") + (synopsis "Convert numbers into binary, octal and hexadecimal") + (description "The @code{kastrup} package provides the +@emph{binhex.tex} file. This file provides expandable macros for both +fixed-width and minimum-width numbers to bases 2, 4, 8 and 16. All +constructs TeX accepts as arguments to its @code{\\number} primitive +are valid as arguments for the macros. The package may be used under +LaTeX and plain TeX.") + (license (license:fsf-free "file:/binhex.dtx")))) diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm index 91e37b16d7..47a8fa81c8 100644 --- a/gnu/packages/text-editors.scm +++ b/gnu/packages/text-editors.scm @@ -862,14 +862,14 @@ Octave. TeXmacs is completely extensible via Guile.") (define-public scintilla (package (name "scintilla") - (version "4.4.6") + (version "5.0.1") (source (origin (method url-fetch) (uri (let ((v (apply string-append (string-split version #\.)))) (string-append "https://www.scintilla.org/scintilla" v ".tgz"))) (sha256 - (base32 "1p62dq2fgdkvdn2clz1xjdj09acv87rbifl67zhlz7skqip31y9d")))) + (base32 "0w5550fijkhmzvdydd8770qq9dgnbq1sd0a8rn4g6mwyfpcyhbfy")))) (build-system gnu-build-system) (arguments `(#:make-flags (list "GTK3=1" "CC=gcc" "-Cgtk") @@ -889,7 +889,8 @@ Octave. TeXmacs is completely extensible via Guile.") (find-files "include/" ".")) #t)))))) (native-inputs - `(("pkg-config" ,pkg-config) + `(("gcc" ,gcc-9) ;Code has C++17 requirements + ("pkg-config" ,pkg-config) ("python" ,python-wrapper))) (inputs `(("gtk+" ,gtk+))) @@ -966,7 +967,7 @@ The basic features of Geany are: (define-public fe (package (name "fe") - ;; Stable release is 1.8. However, this development version + ;; Stable release is 1.9. However, this development version ;; introduces support for UTF-8. (version "2.0") (source (origin @@ -975,7 +976,7 @@ The basic features of Geany are: "fe-" version ".tar.gz")) (sha256 (base32 - "1hwws7si1752z6hp61zxznvgsb6846lp8zl1hn5ddhsbafwalwb9")))) + "10mk5wc3dsdp46b3hkjyd740gcdv6m1gvlr3p8xjxf55b3vfs0la")))) (build-system gnu-build-system) (arguments `(#:tests? #f ;no test diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm index be37ea980e..d6ebb59a1e 100644 --- a/gnu/packages/time.scm +++ b/gnu/packages/time.scm @@ -97,14 +97,14 @@ expressions.") (define-public python-pytzdata (package (name "python-pytzdata") - (version "2019.3") + (version "2020.1") (source (origin (method url-fetch) (uri (pypi-uri "pytzdata" version)) (sha256 (base32 - "0ppfc6kz4p41mxyqxq1g1zp6gvns99g6b344qj6ih0x9vxy6zh7s")))) + "0h0md0ldhb8ghlwjslkzh3wcj4fxg3n43bj5sghqs2m06nri7yiy")))) (build-system python-build-system) ;; XXX: The PyPI distribution contains no tests, and the upstream ;; repository lacks a setup.py! How to build from git? @@ -123,14 +123,15 @@ expressions.") (define-public python-pytz (package (name "python-pytz") - (version "2020.4") + ;; This package should be kept in sync with tzdata in (gnu packages base). + (version "2021.1") (source (origin (method url-fetch) (uri (pypi-uri "pytz" version)) (sha256 (base32 - "0s72lz9q7rm2xgl2in0nvhn5cp0cyrxa257fpj2919g0s797ssry")))) + "1nn459q7zg20n75akxl3ljkykgw1ydc8nb05rx1y4f5zjh4ak943")))) (build-system python-build-system) (home-page "http://pythonhosted.org/pytz") (synopsis "Python timezone library") diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm index 39ed7d74af..9ae7ff6d81 100644 --- a/gnu/packages/tls.scm +++ b/gnu/packages/tls.scm @@ -277,7 +277,7 @@ living in the same process.") (description "GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols. It is provided in the form of a C library to support the -protocols, as well as to parse and write X.5009, PKCS 12, OpenPGP and other +protocols, as well as to parse and write X.509, PKCS #12, OpenPGP and other required structures.") (license license:lgpl2.1+) (properties '((ftp-server . "ftp.gnutls.org") @@ -460,7 +460,7 @@ required structures.") (define-public openssl/fixed (package (inherit openssl) - (version "1.1.1j") + (version "1.1.1k") (source (origin (method url-fetch) (uri (list (string-append "https://www.openssl.org/source/openssl-" @@ -473,7 +473,7 @@ required structures.") (patches (search-patches "openssl-1.1-c-rehash-in.patch")) (sha256 (base32 - "1gw17520vh13izy1xf5q0a2fqgcayymjjj5bk0dlkxndfnszrwma")))))) + "1rdfzcrxy9y38wqdw5942vmdax9hjhgrprzxm42csal7p5shhal9")))))) (define-public openssl-1.0 (package diff --git a/gnu/packages/tmux.scm b/gnu/packages/tmux.scm index 1537080dd8..b741b99ddd 100644 --- a/gnu/packages/tmux.scm +++ b/gnu/packages/tmux.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com> ;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com> ;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at> -;;; Copyright © 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2019–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2020 Edouard Klein <edk@beaver-labs.com> @@ -224,7 +224,7 @@ them, etc., by attaching to the corresponding pane in tmux.") (define-public tmux-xpanes (package (name "tmux-xpanes") - (version "4.1.2") + (version "4.1.3") (source (origin (method git-fetch) (uri (git-reference @@ -233,7 +233,7 @@ them, etc., by attaching to the corresponding pane in tmux.") (file-name (git-file-name name version)) (sha256 (base32 - "0vm5mi6dqdbg0b5qh4r8sr1plpc00jryd8a2qxpp3a72cigjvvf0")))) + "09fmnn1q76r1l4cv7clmfr3j9cjmd053kq238d0qj2i486948ivv")))) (build-system trivial-build-system) (inputs `(("bash" ,bash))) diff --git a/gnu/packages/upnp.scm b/gnu/packages/upnp.scm index 33f3fb21c0..2743ba456d 100644 --- a/gnu/packages/upnp.scm +++ b/gnu/packages/upnp.scm @@ -96,14 +96,14 @@ over IRC, instant messaging, network games, and most server software.") (define-public libupnp (package (name "libupnp") - (version "1.14.2") + (version "1.14.5") (source (origin (method url-fetch) (uri (string-append "https://github.com/pupnp/pupnp/releases/download" "/release-" version "/libupnp-" version".tar.bz2")) (sha256 - (base32 "0w62sn95fnp12qwz5nid6ksg2h9k0k6rinz00p8m3jd4j5dh9qzz")))) + (base32 "16hlcpffmqd4rja57m6km1dpx3abgv91vvmb8971vfg6gd0glzr2")))) (native-inputs `(("pkg-config" ,pkg-config))) (build-system gnu-build-system) diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index 4d4b276a10..f8b88975ac 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -172,14 +172,14 @@ as well as the classic centralized workflow.") (define-public git (package (name "git") - (version "2.31.0") + (version "2.31.1") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/software/scm/git/git-" version ".tar.xz")) (sha256 (base32 - "0h4sg3xqa9pd2agrd7m18sqg319ls978d39qswyf30rjvg5n5wg8")))) + "10367n5sv4nsgaxy486pbp7nscx34vjk8vrb06jm9ffm8ix42qcz")))) (build-system gnu-build-system) (native-inputs `(("native-perl" ,perl) @@ -196,7 +196,7 @@ as well as the classic centralized workflow.") version ".tar.xz")) (sha256 (base32 - "1v40wwj130k76xf2w6vwhvfpkk765q1gcy5bqcrqssxf66ydqp8q")))) + "00n7vbfmd3ywgjksgwrszwj0l2niba64qkaq07ra4p8mawy483ax")))) ;; For subtree documentation. ("asciidoc" ,asciidoc-py3) ("docbook-xsl" ,docbook-xsl) @@ -2330,7 +2330,7 @@ Mercurial, Bazaar, Darcs, CVS, Fossil, and Veracity.") (define-public grokmirror (package (name "grokmirror") - (version "2.0.5") + (version "2.0.8") (source (origin (method git-fetch) @@ -2340,7 +2340,7 @@ Mercurial, Bazaar, Darcs, CVS, Fossil, and Veracity.") (commit (string-append "v" version)))) (file-name (string-append name "-" version "-checkout")) (sha256 - (base32 "006ar3kc6fw1sq300ar9np4a63qzzsdama6cv30wh65v5mqw1mnv")))) + (base32 "0zfiwjw02df3mzpawp9jx61iwp0nhcf6y03cs8022l0hkvc7blbr")))) (build-system python-build-system) (arguments `(#:tests? #f ; no test suite @@ -2722,7 +2722,7 @@ interrupted, published, and collaborated on while in progress.") (define-public git-lfs (package (name "git-lfs") - (version "2.13.2") + (version "2.13.3") (source (origin (method git-fetch) (uri (git-reference @@ -2731,7 +2731,7 @@ interrupted, published, and collaborated on while in progress.") (file-name (git-file-name name version)) (sha256 (base32 - "0gfpzdya48phwln61746ii78sq55mhzj938lz8x062xkkcsdvbf4")))) + "0r7dmqhkhz91d3n7qfpny483x8f1n88yya22j2fvx75rgg33z2sg")))) (build-system go-build-system) (arguments `(#:import-path "github.com/git-lfs/git-lfs" @@ -3024,7 +3024,7 @@ If several repos are related, it helps to see their status together.") (define-public ghq (package (name "ghq") - (version "1.1.5") + (version "1.1.7") (home-page "https://github.com/x-motemen/ghq") (source (origin (method git-fetch) @@ -3034,7 +3034,7 @@ If several repos are related, it helps to see their status together.") (file-name (git-file-name name version)) (sha256 (base32 - "098fik155viylq07az7crzbgswcvhpx0hr68xpvyx0rpri792jbq")))) + "155sfmhmh4ia3iinm1s8fk7fxyn5dxdryad9xkbg7mr3i3ikqjwh")))) (build-system go-build-system) (arguments '(#:install-source? #f diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 6a2de91227..1e90874a1c 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -15,7 +15,7 @@ ;;; Copyright © 2016, 2018, 2019, 2020 Eric Bavier <bavier@posteo.net> ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2017 Feng Shu <tumashu@163.com> -;;; Copyright © 201–72021 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Chris Marusich <cmmarusich@gmail.com> ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017 Ethan R. Jones <doubleplusgood23@gmail.com> @@ -286,7 +286,7 @@ video and audio streams from a DVD.") (define-public svt-hevc (package (name "svt-hevc") - (version "1.4.3") + (version "1.5.0") (source (origin (method git-fetch) @@ -296,7 +296,7 @@ video and audio streams from a DVD.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1sqh3dciqm2p1b66kngcpxqy5fx3ramxlxy8gfcbdwn2i3rsqhs7")))) + (base32 "038r3x3axil895vh2dq6223623ybrc45vn58vfmfb7cikz68sy23")))) (build-system cmake-build-system) (arguments `(#:tests? #f)) ; Test script is stand-alone @@ -381,7 +381,7 @@ video decode, encode and filtering on Intel's Gen graphics hardware platforms.") #t)))))) (native-inputs `(("dash" ,dash) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (inputs `(("glew" ,glew) @@ -772,7 +772,7 @@ television and DVD. It is also known as AC-3.") (define-public libaom (package (name "libaom") - (version "2.0.2") + (version "3.0.0") (source (origin (method git-fetch) (uri (git-reference @@ -781,7 +781,7 @@ television and DVD. It is also known as AC-3.") (file-name (git-file-name name version)) (sha256 (base32 - "0f3i983s9yvh9zc6mpy1ck5sjcg9l09lpw9v4md3mv8gbih9f0z0")))) + "178rq1d7i9q4lg40bipkyhdrk18j9wi5k5avpa5bls0zm7g5ifsx")))) (build-system cmake-build-system) (native-inputs `(("perl" ,perl) @@ -1995,7 +1995,7 @@ SVCD, DVD, 3ivx, DivX 3/4/5, WMV and H.264 movies.") (define-public mpv (package (name "mpv") - (version "0.33.0") + (version "0.33.1") (source (origin (method git-fetch) (uri (git-reference @@ -2004,7 +2004,7 @@ SVCD, DVD, 3ivx, DivX 3/4/5, WMV and H.264 movies.") (file-name (git-file-name name version)) (sha256 (base32 - "06cmycd2gb826kf2zv470w6nhzyk9sdhjydsdiinbgb902lzcpfy")))) + "06rw1f55zcsj78ql8w70j9ljp2qb1pv594xj7q9cmq7i92a7hq45")))) (build-system waf-build-system) (native-inputs `(("perl" ,perl) ; for zsh completion file @@ -2179,14 +2179,14 @@ To load this plugin, specify the following option when starting mpv: (define-public youtube-dl (package (name "youtube-dl") - (version "2021.03.14") + (version "2021.04.07") (source (origin (method url-fetch) (uri (string-append "https://youtube-dl.org/downloads/latest/" "youtube-dl-" version ".tar.gz")) (sha256 (base32 - "1bh74f9q6dv17ah5x8zcxw03dq6jbh959xd39kw374cf9ifrgnd3")) + "02d51l6gdjr3zhhi7ydf5kzv8dv4jzq0ygja7zb2h9k7hnl0l27m")) (snippet '(begin ;; Delete the pre-generated files, except for the man page @@ -2686,7 +2686,7 @@ for use with HTML5 video.") (define-public avidemux (package (name "avidemux") - (version "2.7.6") + (version "2.7.8") (source (origin (method url-fetch) (uri (string-append @@ -2694,7 +2694,7 @@ for use with HTML5 video.") "avidemux_" version ".tar.gz")) (sha256 (base32 - "1kwkn976ppahrcr74bnv6sqx75pzl9y21m1mvr5ksi1m6lgp924s")) + "00blv5455ry3bb86zyzk1xmq3rbqmbif62khc0kq3whza97l12k2")) (patches (search-patches "avidemux-install-to-lib.patch")))) (build-system cmake-build-system) (native-inputs @@ -2727,7 +2727,7 @@ for use with HTML5 video.") #:phases ;; Make sure files inside the included ffmpeg tarball are ;; patch-shebanged. - (let ((ffmpeg "ffmpeg-4.2.3")) + (let ((ffmpeg "ffmpeg-4.2.4")) (modify-phases %standard-phases (add-before 'patch-source-shebangs 'unpack-ffmpeg (lambda _ @@ -4757,7 +4757,7 @@ transcode or reformat the videos in any way, producing perfect backups.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/AOMediaCodec/SVT-AV1") + (url "https://gitlab.com/AOMediaCodec/SVT-AV1.git") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 @@ -4783,7 +4783,7 @@ transcode or reformat the videos in any way, producing perfect backups.") (description "SVT-AV1 is an AV1 codec implementation. The encoder is a work-in-progress, aiming to support video-on-demand and live streaming applications. It only supports Intel-compatible CPUs (x86).") - (home-page "https://github.com/AOMediaCodec/SVT-AV1") + (home-page "https://gitlab.com/AOMediaCodec/SVT-AV1") (license license:bsd-2))) (define-public svt-vp9 diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index 9a3547bbc9..231fae9298 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Nikita <nikita@n0.is> ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> @@ -71,7 +71,7 @@ (define-public vim (package (name "vim") - (version "8.2.2632") + (version "8.2.2689") (source (origin (method git-fetch) (uri (git-reference @@ -80,7 +80,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "0f80im1swja58n99696zslyzapsx8pyf545pmpzvy173ymnvm6nq")))) + "0l0hkr8cw7fdsfc5zzcxx3q1wmv9k3hrgalvffq0l69lviqdgh0p")))) (build-system gnu-build-system) (arguments `(#:test-target "test" @@ -842,7 +842,7 @@ through its msgpack-rpc API.") (define-public vim-asyncrun (package (name "vim-asyncrun") - (version "2.7.5") + (version "2.8.5") (source (origin (method git-fetch) (uri (git-reference @@ -851,7 +851,7 @@ through its msgpack-rpc API.") (file-name (git-file-name name version)) (sha256 (base32 - "02fiqf4rcrxbcgvj02mpd78wkxsrnbi54aciwh9fv5mnz5ka249m")))) + "0mxsmjv497h6w8dxw0zvqginlx0yvrvrx4z3jhq2x3y2dfvpcm41")))) (build-system copy-build-system) (arguments '(#:install-plan diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index a2d348ab2c..7691614dfa 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -12,12 +12,13 @@ ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2019 Guy Fleury Iteriteka <hoonandon@gmail.com> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> -;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> +;;; Copyright © 2020, 2021 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2020 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2021 Leo Famulari <leo@famulari.name> +;;; Copyright © 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -42,6 +43,7 @@ #:use-module (gnu packages autotools) #:use-module (gnu packages backup) #:use-module (gnu packages base) + #:use-module (gnu packages bash) #:use-module (gnu packages bison) #:use-module (gnu packages build-tools) #:use-module (gnu packages check) @@ -97,6 +99,7 @@ #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages pulseaudio) + #:use-module (gnu packages readline) #:use-module (gnu packages selinux) #:use-module (gnu packages sdl) #:use-module (gnu packages sphinx) @@ -948,7 +951,7 @@ Debian or a derivative using @command{debootstrap}.") (native-inputs `(("glib" ,glib "bin") ; glib-mkenums, etc. ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("vala" ,vala) ("intltool" ,intltool) ("pkg-config" ,pkg-config) @@ -1029,64 +1032,48 @@ manage system or application containers.") (define-public libvirt (package (name "libvirt") - (version "5.8.0") + (version "7.2.0") (source (origin (method url-fetch) (uri (string-append "https://libvirt.org/sources/libvirt-" version ".tar.xz")) (sha256 - (base32 "0m8cqaqflvys5kaqpvb0qr4k365j09jc5xk6x70yvg8qkcl2hcz2")) - (patches - (search-patches "libvirt-create-machine-cgroup.patch")))) - (build-system gnu-build-system) + (base32 "1l6i1rz1v9rnp61sgzlrlbsfh03208dbm3b259i0jl5sqz85kx01")) + (patches (search-patches "libvirt-add-install-prefix.patch")))) + (build-system meson-build-system) (arguments `(#:configure-flags - (list "--with-qemu" - "--with-qemu-user=nobody" - "--with-qemu-group=kvm" - "--with-polkit" - (string-append "--docdir=" (assoc-ref %outputs "out") "/share/doc/" + (list "-Ddriver_qemu=enabled" + "-Dqemu_user=nobody" + "-Dqemu_group=kvm" + "-Dstorage_disk=enabled" + "-Dstorage_dir=enabled" + "-Dpolkit=enabled" + "-Dnls=enabled" ;translations + (string-append "-Ddocdir=" (assoc-ref %outputs "out") "/share/doc/" ,name "-" ,version) + "-Dbash_completion=enabled" + (string-append "-Dinstall_prefix=" (assoc-ref %outputs "out")) "--sysconfdir=/etc" "--localstatedir=/var") + #:meson ,meson-0.55 #:phases (modify-phases %standard-phases - (add-before 'configure 'fix-BOURNE_SHELL-definition - ;; BOURNE_SHELL is hard-#defined to ‘/bin/sh’, causing test failures. - (lambda _ - (substitute* "config.h.in" - (("/bin/sh") (which "sh"))) - #t)) - (add-before 'configure 'patch-libtirpc-file-names - (lambda* (#:key inputs #:allow-other-keys) - ;; libvirt uses an m4 macro instead of pkg-config to determine where - ;; the RPC headers are located. Tell it to look in the right place. - (substitute* "configure" - (("/usr/include/tirpc") ;defined in m4/virt-xdr.m4 - (string-append (assoc-ref inputs "libtirpc") - "/include/tirpc"))) - #t)) (add-before 'configure 'disable-broken-tests (lambda _ - (let ((tests (list "commandtest" ; hangs idly - "qemuxml2argvtest" ; fails - "qemuhotplugtest" ; fails - "virnetsockettest" ; tries to network - "virshtest"))) ; fails - (substitute* "tests/Makefile.in" - (((format #f "(~a)\\$\\(EXEEXT\\)" (string-join tests "|"))) + (let ((tests (list "commandtest" ; hangs idly + "qemuxml2argvtest" ; fails + "virnetsockettest"))) ; tries to network + (substitute* "tests/meson.build" + (((format #f ".*'name': '(~a)'.*" (string-join tests "|"))) "")) #t))) - (replace 'install - ;; Since the sysconfdir and localstatedir should be /etc and /var - ;; at runtime, we must prevent writing to them at installation - ;; time. - (lambda* (#:key make-flags #:allow-other-keys) - (apply invoke "make" "install" - "sysconfdir=/tmp/etc" - "localstatedir=/tmp/var" - make-flags)))))) + (add-before 'install 'no-polkit-magic + ;; Meson ‘magically’ invokes pkexec, which fails (not setuid). + (lambda _ + (setenv "PKEXEC_UID" "something") + #t))))) (inputs `(("libxml2" ,libxml2) ("eudev" ,eudev) @@ -1095,25 +1082,32 @@ manage system or application containers.") ("dbus" ,dbus) ("libpcap" ,libpcap) ("libnl" ,libnl) + ("libssh2" ,libssh2) ;optional ("libtirpc" ,libtirpc) ;for <rpc/rpc.h> ("libuuid" ,util-linux "lib") ("lvm2" ,lvm2) ;for libdevmapper ("curl" ,curl) ("openssl" ,openssl) + ("readline" ,readline) ("cyrus-sasl" ,cyrus-sasl) ("libyajl" ,libyajl) ("audit" ,audit) ("dmidecode" ,dmidecode) ("dnsmasq" ,dnsmasq) ("ebtables" ,ebtables) + ("parted" ,parted) ("iproute" ,iproute) ("iptables" ,iptables))) (native-inputs - `(("xsltproc" ,libxslt) + `(("bash-completion" ,bash-completion) + ("gettext" ,gettext-minimal) + ("xsltproc" ,libxslt) ("perl" ,perl) ("pkg-config" ,pkg-config) ("polkit" ,polkit) - ("python" ,python-wrapper))) + ("python" ,python-wrapper) + ("python-docutils" ,python-docutils) ;for rst2html + ("rpcsvc-proto" ,rpcsvc-proto))) ;for rpcgen (home-page "https://libvirt.org") (synopsis "Simple API for virtualization") (description "Libvirt is a C toolkit to interact with the virtualization @@ -1125,15 +1119,15 @@ to integrate other virtualization mechanisms if needed.") (define-public libvirt-glib (package (name "libvirt-glib") - (version "3.0.0") + (version "4.0.0") (source (origin (method url-fetch) (uri (string-append "ftp://libvirt.org/libvirt/glib/" - "libvirt-glib-" version ".tar.gz")) + "libvirt-glib-" version ".tar.xz")) (sha256 (base32 - "1zpbv4ninc57c9rw4zmmkvvqn7154iv1qfr20kyxn8xplalqrzvz")))) - (build-system gnu-build-system) + "1gdcvqz88qkp402zra9csc6391f2xki1270x683n6ixakl3gf8w4")))) + (build-system meson-build-system) (inputs `(("openssl" ,openssl) ("cyrus-sasl" ,cyrus-sasl) @@ -1167,14 +1161,14 @@ three libraries: (define-public python-libvirt (package (name "python-libvirt") - (version "5.8.0") + (version "7.2.0") (source (origin (method url-fetch) (uri (string-append "https://libvirt.org/sources/python/libvirt-python-" version ".tar.gz")) (sha256 - (base32 "0kyz3lx49d8p75mvbzinxc1zgs8g7adn77y9bm15b8b4ad9zl5s6")))) + (base32 "1ryfimhf47s9k4n0gys233bh15l68fccs2bvj8bjwqjm9k2vmhy0")))) (build-system python-build-system) (arguments `(#:phases @@ -1206,7 +1200,7 @@ virtualization library.") (define-public virt-manager (package (name "virt-manager") - (version "2.2.1") + (version "3.2.0") (source (origin (method url-fetch) (uri (string-append "https://virt-manager.org/download/sources" @@ -1214,11 +1208,10 @@ virtualization library.") version ".tar.gz")) (sha256 (base32 - "06ws0agxlip6p6n3n43knsnjyd91gqhh2dadgc33wl9lx1k8vn6g")))) + "11kvpzcmyir91qz0dsnk7748jbb4wr8mrc744w117qc91pcy6vrb")))) (build-system python-build-system) (arguments `(#:use-setuptools? #f ; uses custom distutils 'install' command - #:test-target "test_ui" #:tests? #f ; TODO The tests currently fail ; RuntimeError: Loop condition wasn't ; met @@ -1236,12 +1229,6 @@ virtualization library.") (substitute* "virtinst/buildconfig.py" (("/usr") (assoc-ref outputs "out"))) #t)) - (add-after 'unpack 'fix-qemu-img-reference - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "virtconv/formats.py" - (("/usr(/bin/qemu-img)" _ suffix) - (string-append (assoc-ref inputs "qemu") suffix))) - #t)) (add-after 'unpack 'fix-default-uri (lambda* (#:key inputs #:allow-other-keys) ;; Xen is not available for now - so only patch qemu. @@ -1272,11 +1259,12 @@ virtualization library.") (lambda* (#:key tests? #:allow-other-keys) (when tests? (setenv "HOME" "/tmp") + (setenv "XDG_CACHE_HOME" "/tmp") (system "Xvfb :1 &") (setenv "DISPLAY" ":1") ;; Dogtail requires that Assistive Technology support be enabled (setenv "GTK_MODULES" "gail:atk-bridge") - (invoke "dbus-run-session" "--" "python" "setup.py" "test_ui")) + (invoke "dbus-run-session" "--" "pytest" "--uitests")) #t)) (add-after 'install 'glib-or-gtk-compile-schemas (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-compile-schemas)) @@ -1306,7 +1294,9 @@ virtualization library.") ("gtk+" ,gtk+ "bin") ; gtk-update-icon-cache ("perl" ,perl) ; pod2man ("intltool" ,intltool) + ("rst2man" ,python-docutils) ;; The following are required for running the tests + ;; ("python-pytest" ,python-pytest) ;; ("python-dogtail" ,python-dogtail) ;; ("xvfb" ,xorg-server-for-tests) ;; ("dbus" ,dbus) @@ -1528,17 +1518,16 @@ monitor/GPU.") (define-public runc (package (name "runc") - (version "1.0.0-rc6") + (version "1.0.0-rc93") (source (origin (method url-fetch) (uri (string-append "https://github.com/opencontainers/runc/releases/" "download/v" version "/runc.tar.xz")) (file-name (string-append name "-" version ".tar.xz")) - (patches (search-patches "runc-CVE-2019-5736.patch")) (sha256 (base32 - "1c7832dq70slkjh8qp2civ1wxhhdd2hrx84pq7db1mmqc9fdr3cc")))) + "0b90r1bkvlqli53ca1yc1l488dba0isd3i6l7nlhszxi8p7hzvkh")))) (build-system go-build-system) (arguments '(#:import-path "github.com/opencontainers/runc" @@ -1548,35 +1537,27 @@ monitor/GPU.") #:tests? #f #:phases (modify-phases %standard-phases - (replace 'unpack - (lambda* (#:key source import-path #:allow-other-keys) - ;; Unpack the tarball into 'runc' instead of 'runc-1.0.0-rc5'. - (let ((dest (string-append "src/" import-path))) - (mkdir-p dest) - (invoke "tar" "-C" (string-append "src/" import-path) - "--strip-components=1" - "-xvf" source)))) (replace 'build (lambda* (#:key import-path #:allow-other-keys) (with-directory-excursion (string-append "src/" import-path) - ;; XXX: requires 'go-md2man'. - ;; (invoke "make" "man") - (invoke "make")))) - ;; (replace 'check - ;; (lambda _ - ;; (invoke "make" "localunittest"))) + (invoke "make" "all" "man")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "make" "localunittest")))) (replace 'install (lambda* (#:key import-path outputs #:allow-other-keys) (with-directory-excursion (string-append "src/" import-path) (let ((out (assoc-ref outputs "out"))) - (invoke "make" "install" "install-bash" + (invoke "make" "install" "install-bash" "install-man" (string-append "PREFIX=" out))))))))) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("go-md2man" ,go-github-com-go-md2man) + ("pkg-config" ,pkg-config))) (inputs `(("libseccomp" ,libseccomp))) (synopsis "Open container initiative runtime") - (home-page "https://www.opencontainers.org/") + (home-page "https://opencontainers.org/") (description "@command{runc} is a command line client for running applications packaged according to the @@ -1588,7 +1569,7 @@ Open Container Initiative specification.") (define-public umoci (package (name "umoci") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) @@ -1597,7 +1578,7 @@ Open Container Initiative specification.") version "/umoci.tar.xz")) (file-name (string-append "umoci-" version ".tar.xz")) (sha256 - (base32 "06q7xfwnqysc013hapx31jhlzmyg8qb467qfkynj673qc7p9bd6h")))) + (base32 "0fvljj9k4f83wbqzd8nbijz0p1zaq633f8yxyvl5sy3wjf03ffk9")))) (build-system go-build-system) (arguments '(#:import-path "github.com/opencontainers/umoci" @@ -1634,7 +1615,7 @@ Open Container Initiative (OCI) image layout and its tagged images.") (define-public skopeo (package (name "skopeo") - (version "1.2.1") + (version "1.2.2") (source (origin (method git-fetch) (uri (git-reference @@ -1643,7 +1624,7 @@ Open Container Initiative (OCI) image layout and its tagged images.") (file-name (git-file-name name version)) (sha256 (base32 - "1y9pmijazbgxzriymrm7zrifmkd1x1wad9b3zjcj7zwr6c999dhg")))) + "03sznybn3rqjyplc6w4b7mfa6gas8db15p5vnmfm1xqw72ldylgc")))) (build-system go-build-system) (native-inputs `(("pkg-config" ,pkg-config) diff --git a/gnu/packages/visidata.scm b/gnu/packages/visidata.scm index 4b18e0f41e..966afea849 100644 --- a/gnu/packages/visidata.scm +++ b/gnu/packages/visidata.scm @@ -31,14 +31,14 @@ (define-public visidata (package (name "visidata") - (version "2.2.1") + (version "2.4") (source (origin (method url-fetch) (uri (pypi-uri "visidata" version)) (sha256 (base32 - "181klx7223q6a600k9iqxrfxpq5w73h1g2ks1cfsnmlv7i6s9v9f")))) + "1g9g4gd3mqi23damxghwj76zxi2ig9vf4jv8dnvl7q7ssb7gz60d")))) (build-system python-build-system) (arguments '(#:phases diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm index 2ea04acaa2..adb48b1b97 100644 --- a/gnu/packages/vpn.scm +++ b/gnu/packages/vpn.scm @@ -293,24 +293,19 @@ and probably others.") (define-public openconnect-sso (package (name "openconnect-sso") - (version "0.6.2") + (version "0.7.2") (source (origin (method url-fetch) (uri (pypi-uri "openconnect-sso" version)) (sha256 (base32 - "1yybmscka3m5yxfkp1m5pqz2m8jlwdq9b0hx2w5l1jj6bzpl9fsf")))) + "0nb40zfpp38mz6389y0qvrr4mmak53swpg7578cldnhnk0g15qni")))) (build-system python-build-system) (arguments `(#:tests? #f ; Tests not included, building from git requires poetry. #:phases (modify-phases %standard-phases - (add-after 'unpack 'adjust-package-version-requirements - (lambda _ - (substitute* "setup.py" - (("(pyxdg>=0.26),<0.27" _ pyxdg) pyxdg)) - #t)) (add-after 'unpack 'patch-openconnect (lambda _ (substitute* "openconnect_sso/app.py" @@ -683,7 +678,7 @@ WireGuard was added to Linux 5.6.") (define-public wireguard-tools (package (name "wireguard-tools") - (version "1.0.20210223") + (version "1.0.20210315") (source (origin (method git-fetch) @@ -692,7 +687,7 @@ WireGuard was added to Linux 5.6.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1pz7rir7bzj7rv1lqy45pqnr6jxsb4war31f9492757fql7kcrf4")))) + (base32 "1an5gm2dv111n3fylbrnyynxmi2d3iwf2b46zq08hc54kzazxcml")))) (build-system gnu-build-system) (arguments `(#:make-flags diff --git a/gnu/packages/web-browsers.scm b/gnu/packages/web-browsers.scm index e5e726ad19..cff761a344 100644 --- a/gnu/packages/web-browsers.scm +++ b/gnu/packages/web-browsers.scm @@ -17,6 +17,7 @@ ;;; Copyright © 2020 Alexandru-Sergiu Marton <brown121407@posteo.ro> ;;; Copyright © 2021 Cage <cage-dev@twistfold.it> ;;; Copyright © 2021 Benoit Joly <benoit@benoitj.ca> +;;; Copyright © 2021 Alexander Krotov <krotov@iitp.ru> ;;; ;;; This file is part of GNU Guix. ;;; @@ -64,20 +65,24 @@ #:use-module (gnu packages image) #:use-module (gnu packages libevent) #:use-module (gnu packages libidn) + #:use-module (gnu packages libunistring) #:use-module (gnu packages linux) #:use-module (gnu packages lisp) #:use-module (gnu packages lisp-xyz) #:use-module (gnu packages lua) #:use-module (gnu packages man) #:use-module (gnu packages markup) + #:use-module (gnu packages mp3) #:use-module (gnu packages nano) #:use-module (gnu packages ncurses) + #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) + #:use-module (gnu packages sdl) #:use-module (gnu packages sqlite) #:use-module (gnu packages tls) #:use-module (gnu packages webkit) @@ -173,14 +178,14 @@ older or slower computers and embedded systems.") (define-public links (package (name "links") - (version "2.21") + (version "2.22") (source (origin (method url-fetch) (uri (string-append "http://links.twibright.com/download/" "links-" version ".tar.bz2")) (sha256 (base32 - "0qqdcghsdqm7l6kyi0k752ws3ak5crw85pqkcb11wy67j62yspi8")))) + "0k88qbmq0mf6zmk2v158c0rxvqbi7ysn58xyf4qqw7kz79mrhr03")))) (build-system gnu-build-system) (arguments `(#:phases @@ -717,6 +722,39 @@ key-bindings and is fully configurable and extensible in Common Lisp.") (define-public sbcl-next (deprecated-package "sbcl-next" nyxt)) +(define-public lagrange + (package + (name "lagrange") + (version "1.3.2") + (source + (origin + (method url-fetch) + (uri + (string-append "https://git.skyjake.fi/skyjake/lagrange/releases/" + "download/v" version "/lagrange-" version ".tar.gz")) + (sha256 + (base32 "14yj3l3h6i6ygdhyiwdg2cg6y5imlkql09r7dm5v7xm1ja0sr9lp")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #false)) ;no tests + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("libunistring" ,libunistring) + ("mpg123" ,mpg123) + ("openssl" ,openssl) + ("pcre" ,pcre) + ("sdl2" ,sdl2) + ("zlib" ,zlib))) + (home-page "https://gmi.skyjake.fi/lagrange/") + (synopsis "Graphical Gemini client") + (description + "Lagrange is a desktop GUI client for browsing Geminispace. It offers +modern conveniences familiar from web browsers, such as smooth scrolling, +inline image viewing, multiple tabs, visual themes, Unicode fonts, bookmarks, +history, and page outlines.") + (license license:bsd-2))) + (define-public gmni (let ((commit "d8f0870446c471a42612d6a8e853ad9b723a6d39") (revision "0")) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 4a7a3bb233..b8bc90a03d 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -22,7 +22,7 @@ ;;; Copyright © 2017, 2018, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017 Petter <petter@mykolab.ch> -;;; Copyright © 2017 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2017, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2017, 2019, 2020 Christopher Baines <mail@cbaines.net> ;;; Copyright © 2018, 2019 Julien Lepiller <julien@lepiller.eu> @@ -368,14 +368,14 @@ the same, being completely separated from the Internet.") ;; ’stable’ and recommends that “in general you deploy the NGINX mainline ;; branch at all times” (https://www.nginx.com/blog/nginx-1-6-1-7-released/) ;; Consider updating the nginx-documentation package together with this one. - (version "1.19.8") + (version "1.19.9") (source (origin (method url-fetch) (uri (string-append "https://nginx.org/download/nginx-" version ".tar.gz")) (sha256 (base32 - "01cb6hsaik1sfjihbrldmwrcn54gk4plfy350sl1b4rml6qik29h")))) + "0hfqqyfgqa6wqazmb3d434nb3r5p8szfisa0m6nfh9lqdbqdyd9f")))) (build-system gnu-build-system) (inputs `(("openssl" ,openssl) ("pcre" ,pcre) @@ -398,6 +398,7 @@ the same, being completely separated from the Internet.") "--with-http_v2_module" "--with-pcre-jit" "--with-debug" + "--with-stream" ;; Even when not cross-building, we pass the ;; --crossbuild option to avoid customizing for the ;; kernel version on the build machine. @@ -458,9 +459,9 @@ and as a proxy to reduce the load on back-end HTTP or mail servers.") (define-public nginx-documentation ;; This documentation should be relevant for the current nginx package. - (let ((version "1.19.8") - (revision 2673) - (changeset "4398fd0f0341")) + (let ((version "1.19.9") + (revision 2696) + (changeset "f85798c1c70a")) (package (name "nginx-documentation") (version (simple-format #f "~A-~A-~A" version revision changeset)) @@ -472,7 +473,7 @@ and as a proxy to reduce the load on back-end HTTP or mail servers.") (file-name (string-append name "-" version)) (sha256 (base32 - "1pds76h19fadmymyr6pnfh72ql6vizpv2628lqcrpqhxgwa6hcbg")))) + "1ksl32jw6h3qzyxxlsdjag7fcjvk3md3hdxn6ljs8pr2nhk1v6cs")))) (build-system gnu-build-system) (arguments '(#:tests? #f ; no test suite @@ -1332,18 +1333,17 @@ parser written in ANSI C and a small validating JSON generator.") (define-public libwebsockets (package (name "libwebsockets") - (version "1.3") + (version "4.1.6") (source (origin ;; The project does not publish tarballs, so we have to take ;; things from Git. (method git-fetch) (uri (git-reference (url "https://github.com/warmcat/libwebsockets") - (commit (string-append "v" version - "-chrome37-firefox30")))) + (commit (string-append "v" version)))) (sha256 (base32 - "12fqh2d2098mgf0ls19p9lzibpsqhv7mc5rn1yvrbfnazmcr40g4")) + "0x56v4hsx92vm1zibfmnqb5g3v23kzciffn3fjlsc3sly2pknhsg")) (file-name (string-append name "-" version)))) (build-system cmake-build-system) @@ -1555,7 +1555,7 @@ used to validate and fix HTML data.") (define-public esbuild (package (name "esbuild") - (version "0.8.51") + (version "0.11.9") (source (origin (method git-fetch) @@ -1564,7 +1564,7 @@ used to validate and fix HTML data.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1j4qza2chng3az1h1fh9zbhxh99q7bfrqbgppyyq5947svi8fvaz")) + (base32 "0pi5ydvbcfi8dbq2ryw8z4197pf4jrlz8mj1vzkdff22ga9qcmxy")) (modules '((guix build utils))) (snippet '(begin @@ -4684,14 +4684,14 @@ their web site.") (define-public python-feedparser (package (name "python-feedparser") - (version "5.2.1") + (version "6.0.2") (source (origin (method url-fetch) - (uri (pypi-uri "feedparser" version ".tar.bz2")) + (uri (pypi-uri "feedparser" version ".tar.gz")) (sha256 (base32 - "00hb4qg2am06g81mygfi1jsbx8830024jm45g6qp9g8fr6am91yf")))) + "0x0hm9brh3j71645pydvlkrwxaaca9dnwd7xahwjyjaz882s200v")))) (build-system python-build-system) (arguments '(#:tests? #f)) @@ -4705,11 +4705,32 @@ CDF, Atom 0.3, and Atom 1.0 feeds.") license:freebsd-doc)))) ; documentation (define-public python2-feedparser - (package-with-python2 python-feedparser)) + (package + (name "python2-feedparser") + (version "5.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "feedparser" version ".tar.bz2")) + (sha256 + (base32 + "00hb4qg2am06g81mygfi1jsbx8830024jm45g6qp9g8fr6am91yf")))) + (build-system python-build-system) + (arguments + `(#:tests? #f + #:python ,python-2)) + (home-page + "https://github.com/kurtmckee/feedparser") + (synopsis "Parse feeds in Python") + (description + "Universal feed parser which handles RSS 0.9x, RSS 1.0, RSS 2.0, +CDF, Atom 0.3, and Atom 1.0 feeds.") + (license (list license:bsd-2 ; source code + license:freebsd-doc)))) ; documentation (define-public guix-data-service - (let ((commit "b7ba8d0c2ca3aca9ba5b5f9f27b9778ee949d20e") - (revision "25")) + (let ((commit "df2a0a73f1f35ea53ba6c07a6ad4c5347ba12b8f") + (revision "27")) (package (name "guix-data-service") (version (string-append "0.0.1-" revision "." (string-take commit 7))) @@ -4721,7 +4742,7 @@ CDF, Atom 0.3, and Atom 1.0 feeds.") (file-name (git-file-name name version)) (sha256 (base32 - "0brv64bsqysl7dncz067blwvmqrlx99c2kwrgpz6k0nqv8nzsa28")))) + "1ss1prr98zdjkm97w24rd04lfnnvcw6xs0gwxqgd40briqisaa5g")))) (build-system gnu-build-system) (arguments '(#:modules ((guix build utils) @@ -4780,15 +4801,15 @@ CDF, Atom 0.3, and Atom 1.0 feeds.") #t))) (delete 'strip)))) ; As the .go files aren't compatible (inputs - `(("guix" ,guile3.0-guix) - ("guile-fibers" ,guile3.0-fibers) - ("guile-json" ,guile3.0-json) - ("guile-email" ,guile3.0-email) + `(("guix" ,guix) + ("guile-fibers" ,guile-fibers) + ("guile-json" ,guile-json-4) + ("guile-email" ,guile-email) ("guile-prometheus" ,guile-prometheus) - ("guile-squee" ,guile3.0-squee) + ("guile-squee" ,guile-squee) ("ephemeralpg" ,ephemeralpg) ("util-linux" ,util-linux) - ("postgresql" ,postgresql-11) + ("postgresql" ,postgresql-13) ("sqitch" ,sqitch))) (native-inputs `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile")) @@ -5887,14 +5908,14 @@ tools like SSH (Secure Shell) to reach the outside world.") (define-public stunnel (package (name "stunnel") - (version "5.58") + (version "5.59") (source (origin (method url-fetch) (uri (string-append "https://www.stunnel.org/downloads/stunnel-" version ".tar.gz")) (sha256 - (base32 "0y9vjzjqi340vy6h321r1cskb7l6a4prr9d2ysixqzjpjv04rhfl")))) + (base32 "17yf2n47j5hw2y9527mrkx3j7q9jk5vvg46m3hgp1wg8dggpcxqk")))) (build-system gnu-build-system) (native-inputs ;; For tests. @@ -6819,18 +6840,19 @@ Web Server.") (define-public java-eclipse-jetty-util (package (name "java-eclipse-jetty-util") - (version "9.4.6") + (version "9.4.39") (source (origin (method url-fetch) (uri (string-append "https://github.com/eclipse/jetty.project/" - "archive/jetty-" version ".v20170531.tar.gz")) + "archive/jetty-" version ".v20210325.tar.gz")) (sha256 (base32 - "0x7kbdvkmgr6kbsmbwiiyv3bb0d6wk25frgvld9cf8540136z9p1")))) + "0b4hy4zmdmfbqk9bzmxk7v75y2ysqiappkip4z3hb9lxjvjh0b19")))) (build-system ant-build-system) (arguments `(#:jar-name "eclipse-jetty-util.jar" #:source-dir "src/main/java" + #:tests? #f; require junit 5 #:test-exclude (list "**/Abstract*.java" ;; requires network @@ -6849,11 +6871,6 @@ Web Server.") (inputs `(("slf4j" ,java-slf4j-api) ("servlet" ,java-javaee-servletapi))) - (native-inputs - `(("junit" ,java-junit) - ("hamcrest" ,java-hamcrest-all) - ("perf-helper" ,java-eclipse-jetty-perf-helper) - ("test-helper" ,java-eclipse-jetty-test-helper))) (home-page "https://www.eclipse.org/jetty/") (synopsis "Utility classes for Jetty") (description "The Jetty Web Server provides an HTTP server and Servlet @@ -6914,6 +6931,7 @@ or embedded instantiation. This package provides utility classes.") `(#:jar-name "eclipse-jetty-io.jar" #:source-dir "src/main/java" #:jdk ,icedtea-8 + #:tests? #f; require junit 5 #:test-exclude (list "**/Abstract*.java" ;; Abstract class "**/EndPointTest.java") @@ -6955,6 +6973,7 @@ or embedded instantiation. This package provides IO-related utility classes.")) `(#:jar-name "eclipse-jetty-http.jar" #:source-dir "src/main/java" #:jdk ,icedtea-8 + #:tests? #f; require junit 5 #:phases (modify-phases %standard-phases (add-before 'configure 'chdir @@ -7090,9 +7109,6 @@ or embedded instantiation. This package provides the JMX management."))) ("io" ,java-eclipse-jetty-io) ("jmx" ,java-eclipse-jetty-jmx) ("util" ,java-eclipse-jetty-util))) - (native-inputs - `(("test-classes" ,java-eclipse-jetty-http-test-classes) - ,@(package-native-inputs java-eclipse-jetty-util))) (synopsis "Core jetty server artifact") (description "The Jetty Web Server provides an HTTP server and Servlet container capable of serving static and dynamic content either from a standalone @@ -7122,6 +7138,7 @@ artifact."))) `(#:jar-name "eclipse-jetty-security.jar" #:source-dir "src/main/java" #:jdk ,icedtea-8 + #:tests? #f; require junit 5 #:test-exclude (list "**/ConstraintTest.*") ; This test fails #:phases (modify-phases %standard-phases @@ -7135,9 +7152,6 @@ artifact."))) ("http" ,java-eclipse-jetty-http) ("server" ,java-eclipse-jetty-server) ("util" ,java-eclipse-jetty-util))) - (native-inputs - `(("io" ,java-eclipse-jetty-io) - ,@(package-native-inputs java-eclipse-jetty-util))) (synopsis "Jetty security infrastructure") (description "The Jetty Web Server provides an HTTP server and Servlet container capable of serving static and dynamic content either from a standalone @@ -7158,6 +7172,18 @@ infrastructure"))) `(("io" ,java-eclipse-jetty-io-9.2) ,@(package-native-inputs java-eclipse-jetty-util-9.2))))) +(define-public java-eclipse-jetty-util-ajax + (package + (inherit java-eclipse-jetty-util) + (name "java-eclipse-jetty-util-ajax") + (arguments + `(#:jar-name "eclipse-jetty-util-ajax.jar" + #:source-dir "jetty-util-ajax/src/main/java" + #:tests? #f)); require junit 5 + (inputs + `(("java-eclipse-jetty-util" ,java-eclipse-jetty-util) + ("java-javaee-servletapi" ,java-javaee-servletapi))))) + (define-public java-eclipse-jetty-servlet (package (inherit java-eclipse-jetty-util) @@ -7166,6 +7192,7 @@ infrastructure"))) `(#:jar-name "eclipse-jetty-servlet.jar" #:source-dir "src/main/java" #:jdk ,icedtea-8 + #:tests? #f; require junit 5 #:phases (modify-phases %standard-phases (add-before 'configure 'chdir @@ -7175,8 +7202,8 @@ infrastructure"))) (inputs `(("slf4j" ,java-slf4j-api) ("java-javaee-servletapi" ,java-javaee-servletapi) + ("java-eclipse-jetty-util-ajax" ,java-eclipse-jetty-util-ajax) ("http" ,java-eclipse-jetty-http) - ("http-test" ,java-eclipse-jetty-http-test-classes) ("io" ,java-eclipse-jetty-io) ("jmx" ,java-eclipse-jetty-jmx) ("security" ,java-eclipse-jetty-security) @@ -7266,6 +7293,7 @@ container."))) `(#:jar-name "eclipse-jetty-webapp.jar" #:source-dir "src/main/java" #:jdk ,icedtea-8 + #:tests? #f; require junit 5 ;; One test fails #:test-exclude (list "**/WebAppContextTest.java") #:phases @@ -7277,14 +7305,12 @@ container."))) (inputs `(("java-eclipse-jetty-util" ,java-eclipse-jetty-util) ("java-eclipse-jetty-http" ,java-eclipse-jetty-http) + ("java-eclipse-jetty-io" ,java-eclipse-jetty-io) ("java-eclipse-jetty-server" ,java-eclipse-jetty-server) ("java-eclipse-jetty-servlet" ,java-eclipse-jetty-servlet) ("java-eclipse-jetty-security" ,java-eclipse-jetty-security) ("java-eclipse-jetty-xml" ,java-eclipse-jetty-xml) - ("java-javaee-servletapi" ,java-javaee-servletapi))) - (native-inputs - `(("java-eclipse-jetty-io" ,java-eclipse-jetty-io) - ,@(package-native-inputs java-eclipse-jetty-util))))) + ("java-javaee-servletapi" ,java-javaee-servletapi))))) (define-public java-eclipse-jetty-webapp-9.2 (package diff --git a/gnu/packages/webkit.scm b/gnu/packages/webkit.scm index 89eee74def..083c8ccb08 100644 --- a/gnu/packages/webkit.scm +++ b/gnu/packages/webkit.scm @@ -174,7 +174,7 @@ engine that uses Wayland for graphics output.") ("docbook-xsl" ,docbook-xsl) ("glib:bin" ,glib "bin") ("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("perl" ,perl) ("pkg-config" ,pkg-config) ("python" ,python-wrapper) @@ -226,14 +226,14 @@ acceleration in mind, leveraging common 3D graphics APIs for best performance.") (define-public webkitgtk (package (name "webkitgtk") - (version "2.30.6") + (version "2.32.0") (source (origin (method url-fetch) (uri (string-append "https://www.webkitgtk.org/releases/" "webkitgtk-" version ".tar.xz")) (sha256 (base32 - "07kwkn7gnlfw4idl5vyyzhzbj2bjzvjrclbikn9vaw0pm73nwwsh")) + "1w3b0w8izp0i070grhv19j631sdcd0mcqnjnax13k8mdx7dg8zcx")) (patches (search-patches "webkitgtk-share-store.patch" "webkitgtk-bind-all-fonts.patch")))) (build-system cmake-build-system) @@ -244,6 +244,9 @@ acceleration in mind, leveraging common 3D graphics APIs for best performance.") #:configure-flags (list "-DPORT=GTK" "-DENABLE_GTKDOC=ON" ; No doc by default + ;; Requires libmanette, new dependency added in 2.32.0. + ;; TODO Decide if we should enable this + "-DENABLE_GAMEPAD=OFF" "-DUSE_SYSTEMD=OFF" (string-append ; uses lib64 by default "-DLIB_INSTALL_DIR=" @@ -301,7 +304,7 @@ acceleration in mind, leveraging common 3D graphics APIs for best performance.") ("perl" ,perl) ("pkg-config" ,pkg-config) ("python" ,python-wrapper) - ("gtk-doc" ,gtk-doc) ; For documentation generation + ("gtk-doc" ,gtk-doc/stable) ; For documentation generation ("docbook-xml" ,docbook-xml) ; For documentation generation ("ruby" ,ruby))) (propagated-inputs diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 3aec9455e0..4c32d857a7 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -14,7 +14,7 @@ ;;; Copyright © 2016 Ivan Vilata i Balaguer <ivan@selidor.net> ;;; Copyright © 2017 Mekeor Melire <mekeor.melire@gmail.com> ;;; Copyright © 2017, 2019, 2020 Marius Bakke <marius@gnu.org> -;;; Copyright © 2017, 2020 Oleg Pykhalov <go.wigust@gmail.com> +;;; Copyright © 2017, 2020, 2021 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr> ;;; Copyright © 2018, 2019 Meiyo Peng <meiyo@riseup.net> @@ -44,6 +44,7 @@ ;;; Copyright © 2021 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2021 qblade <qblade@protonmail.com> +;;; Copyright © 2021 lasnesne <lasnesne@lagunposprasihopre.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1570,7 +1571,7 @@ modules for building a Wayland compositor.") (define-public waybar (package (name "waybar") - (version "0.9.4") + (version "0.9.5") (source (origin (method git-fetch) @@ -1579,10 +1580,10 @@ modules for building a Wayland compositor.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "038vnma7y7z81caywp45yr364bc1aq8d01j5vycyiyfv33nm76fy")))) + (base32 "1kzrgqaclfk6gcwhknxn28xl74gm5swipgn8kk8avacb4nsw1l9q")))) (build-system meson-build-system) (inputs `(("date" ,date) - ("fmt" ,fmt-6) + ("fmt" ,fmt) ("gtk-layer-shell" ,gtk-layer-shell) ("gtkmm" ,gtkmm) ("jsoncpp" ,jsoncpp) @@ -1591,7 +1592,7 @@ modules for building a Wayland compositor.") ("libmpdclent" ,libmpdclient) ("libnl" ,libnl) ("pulseaudio" ,pulseaudio) - ("spdlog" ,spdlog-1.7) + ("spdlog" ,spdlog) ("wayland" ,wayland))) (native-inputs `(("glib:bin" ,glib "bin") @@ -2191,7 +2192,7 @@ support, for easier unicode usage."))))) (define-public xclickroot (package (name "xclickroot") - (version "1.2") + (version "1.3") (source (origin (method git-fetch) (uri (git-reference @@ -2200,7 +2201,7 @@ support, for easier unicode usage."))))) (file-name (git-file-name name version)) (sha256 (base32 - "1nd5qz0qz5j7gx2jsbcp234giwaa0xmg42vrcjrcf587q9ivakfl")))) + "0wnsfxvh4v02r2jjyh2n6jfkbj2dna2hlm6anl4b36lwji749k2k")))) (build-system gnu-build-system) (inputs `(("libx11" ,libx11))) @@ -2311,16 +2312,16 @@ start-up.") (define-public xnotify (package (name "xnotify") - (version "0.7.3") + (version "0.8.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/phillbush/xnotify") - (commit version))) + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "09s29m8z4x3mc3wja2587ik3f6zg16b40adr3nllnpyy1mqnprq5")))) + "1jxms4md2mwfjgm2pgg3vakpp33800jbn9hnl0j4jyfc9f1ckbsv")))) (build-system gnu-build-system) (inputs `(("libx11" ,libx11) @@ -2400,3 +2401,90 @@ for wayland conceptually based on the X11 window manager (description "libucl implements a configuration language that is easy to read and write, and compatible with JSON.") (license license:bsd-2))) + +(define-public hikari + (package + (name "hikari") + (version "2.2.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://hikari.acmelabs.space/releases/" + "hikari-" version ".tar.gz")) + (sha256 + (base32 "1d023cphzi15k434n60l1rp5awxmdijvsxfrm59fmsvd5rjxh9q7")))) + (build-system gnu-build-system) + (native-inputs + `(("bmake" ,bmake) + ("pkg-config" ,pkg-config) + ("wayland-protocols" ,wayland-protocols))) + (inputs + `(("cairo" ,cairo) + ("libinput" ,libinput) + ("libucl" ,libucl) + ("libxkbcommon" ,libxkbcommon) + ("pam" ,linux-pam) + ("pango" ,pango) + ("wayland" ,wayland) + ("wlroots" ,wlroots))) + (arguments + `(#:tests? #f ; no tests + #:make-flags + (list + (string-append "PREFIX=" (assoc-ref %outputs "out")) + (string-append "CC=" ,(cc-for-target)) + "WITH_XWAYLAND=YES" + "WITH_SCREENCOPY=YES" + "WITH_LAYERSHELL=YES" + "WITH_VIRTUAL_INPUT=YES") + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda* (#:key inputs outputs make-flags #:allow-other-keys) + (apply invoke "bmake" make-flags))) + (replace 'install + (lambda* (#:key inputs outputs make-flags #:allow-other-keys) + (apply invoke "bmake" "install" make-flags)))))) + (home-page "https://hikari.acmelabs.space/") + (synopsis "Stacking Wayland compositor with tiling capabilities") + (description + "Hikari is a stacking Wayland compositor with additional tiling +capabilities. It is heavily inspired by the Calm Window manager(cwm).") + (license license:bsd-2))) + +(define-public wlogout + (package + (name "wlogout") + (version "1.1.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ArtsyMacaw/wlogout") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1swhzkqkzli59c89pvrakfvicd00x7ga860c3x2pbb4y3xziqfvi")))) + (build-system meson-build-system) + (native-inputs + `(("pkg-config" ,pkg-config) + ("scdoc" ,scdoc))) + (inputs + `(("gtk-layer-shell" ,gtk-layer-shell) + ("gtk+" ,gtk+))) + (arguments + '(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source-paths + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "main.c" + (("/usr/share") (string-append out "/share")) + (("/etc") (string-append out "/etc")))) + #t))))) + (home-page "https://github.com/ArtsyMacaw/wlogout") + (synopsis "Logout menu for Wayland") + (description "wlogout is a logout menu for Wayland environments.") + (license license:expat))) diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index d5d0a2deb8..4202a7168e 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -1475,7 +1475,7 @@ less if you are working in front of the screen at night.") (define-public xscreensaver (package (name "xscreensaver") - (version "5.44") + (version "5.45") (source (origin (method url-fetch) @@ -1483,7 +1483,7 @@ less if you are working in front of the screen at night.") (string-append "https://www.jwz.org/xscreensaver/xscreensaver-" version ".tar.gz")) (sha256 - (base32 "15bv05vpfjwsrqbazrjmm382jd7vvw0mp6y9vasn6wvxzjf0in3k")))) + (base32 "03fmyjlwjinzv7mih6n07glmys8s877snd8zijk2c0ds6rkxy5kh")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no check target @@ -2251,7 +2251,7 @@ Wayland.") (define-public autocutsel (package (name "autocutsel") - (version "0.10.0") + (version "0.10.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/sigmike/autocutsel" @@ -2259,7 +2259,7 @@ Wayland.") "autocutsel-" version ".tar.gz")) (sha256 (base32 - "0gsys2dzh4az51ndcsabhlbbrjn2nm75lnjr45kg6r8sm8q66dx2")))) + "05zb85imp42birvrc320q20r98qddc5vxx169dnl753l5za0czpi")))) (build-system gnu-build-system) (arguments '(#:tests? #f)) ; no "check" target diff --git a/gnu/packages/xfce.scm b/gnu/packages/xfce.scm index f27e7e6e49..40a3db528f 100644 --- a/gnu/packages/xfce.scm +++ b/gnu/packages/xfce.scm @@ -313,7 +313,7 @@ upstream occasionally.") (define-public exo (package (name "exo") - (version "4.16.0") + (version "4.16.1") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -321,7 +321,7 @@ upstream occasionally.") "exo-" version ".tar.bz2")) (sha256 (base32 - "1k5sfm9cmg8k5zzzv0wb2cciqwwklnpfzcpak7wa32lsxl7b0x8r")))) + "0fxm2aczzbi0z4y6x24934964y9jg4cl4frvlnjc5zqmccjsr3aj")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -463,7 +463,7 @@ applications menu, workspace switcher and more.") (define-public xfce4-battery-plugin (package (name "xfce4-battery-plugin") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/panel-plugins/" @@ -471,7 +471,7 @@ applications menu, workspace switcher and more.") name "-" version ".tar.bz2")) (sha256 (base32 - "18s0s004nidii8cc3ldp5n3jajc18vwn9vhkhmhy3lbbs520mghj")))) + "08n2cig9r2lccwvmk6v9vjiz0xqcp6x30m5b3q702v0m6ylg4z8h")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) ("intltool" ,intltool))) @@ -765,7 +765,7 @@ like appearance, display, keyboard and mouse settings.") (define-public thunar (package (name "thunar") - (version "4.16.3") + (version "4.16.6") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -773,7 +773,7 @@ like appearance, display, keyboard and mouse settings.") "thunar-" version ".tar.bz2")) (sha256 (base32 - "0wpzs7r79aayg4zbxy514fbkabac1hhvw522cjjr453gva4xq92m")))) + "1dq238m2bh938gpb058cr2xmhy6f3qkyyya9l0ya95kiwqzislyb")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -1206,7 +1206,7 @@ of data to either CD/DVD/BD.") (define-public mousepad (package (name "mousepad") - (version "0.5.3") + (version "0.5.4") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/apps/mousepad/" @@ -1214,7 +1214,7 @@ of data to either CD/DVD/BD.") version ".tar.bz2")) (sha256 (base32 - "1a6a3x4h6aisjm59i0afx1w50035s76zjr4a6p9ja5bax6wqn877")))) + "189aljqgkrspqk9498izgvssw08pgkyvf7hc7ddmzfhcblp4j3yr")))) (build-system gnu-build-system) (arguments '(#:configure-flags '(;; Use the GSettings keyfile backend rather than @@ -1761,7 +1761,7 @@ mounted or when unmounting fails.") (define-public xfce4-netload-plugin (package (name "xfce4-netload-plugin") - (version "1.3.2") + (version "1.4.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/panel-plugins/" @@ -1770,7 +1770,7 @@ mounted or when unmounting fails.") "/xfce4-netload-plugin-" version ".tar.bz2")) (sha256 (base32 - "0p91875n6s8n88l7wb4w9prqly3wvkyilnr7zq0ppq71rwjh9r12")))) + "036pvhfv1iynvj75va0xl8hpvnfckabyqm9jv56pb40p2072cxkc")))) (build-system gnu-build-system) (native-inputs `(("intltool" ,intltool) @@ -1916,7 +1916,7 @@ freedesktop.org specification.") (define-public xfce4-systemload-plugin (package (name "xfce4-systemload-plugin") - (version "1.2.4") + (version "1.3.1") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/panel-plugins/" @@ -1925,13 +1925,14 @@ freedesktop.org specification.") "/xfce4-systemload-plugin-" version ".tar.bz2")) (sha256 (base32 - "0dcqg13phlcri4i4g9752m4zfkcmidiqpjv4s3l3pfiwjbgvhc85")))) + "0lknh5l30qs5c69wwjcblbyhczvdbxs59fqkb8mpqbfm05w01lan")))) (build-system gnu-build-system) (native-inputs `(("intltool" ,intltool) ("pkg-config" ,pkg-config))) (inputs - `(("libxfce4ui" ,libxfce4ui) + `(("libgtop" ,libgtop) + ("libxfce4ui" ,libxfce4ui) ("xfce4-panel" ,xfce4-panel))) (home-page "https://goodies.xfce.org/projects/panel-plugins/xfce4-systemload-plugin") diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index ac356cb78d..ad5f35ef1e 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -29,6 +29,8 @@ ;;; Copyright © 2021 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2021 Julien Lepiller <julien@lepiller.eu> +;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> +;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -77,6 +79,7 @@ #:use-module (guix build-system meson) #:use-module (guix build-system perl) #:use-module (guix build-system python) + #:use-module (guix utils) #:use-module (gnu packages linux) #:use-module (gnu packages pkg-config)) @@ -99,7 +102,7 @@ `(#:glib-or-gtk? #t)) (native-inputs `(("gobject-introspection" ,gobject-introspection) - ("gtk-doc" ,gtk-doc) + ("gtk-doc" ,gtk-doc/stable) ("pkg-config" ,pkg-config))) (inputs `(("appstream-glib" ,appstream-glib) @@ -221,6 +224,48 @@ hierarchical form with variable field lengths.") project (but it is usable outside of the Gnome platform).") (license license:x11))) +(define-public libxlsxwriter + (package + (name "libxlsxwriter") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jmcnamara/libxlsxwriter") + (commit (string-append "RELEASE_" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0dsqv4qdd582fhwj6m80iz50gkyw4m8n9h4mkd2871csa03sbilf")) + (modules '((guix build utils))) + (snippet + ;; Remove bundled minizip source + '(begin + (delete-file-recursively "third_party/minizip") + #t)))) + (build-system gnu-build-system) + (arguments + `(#:test-target "test" + #:make-flags + (list (string-append "CC=" ,(cc-for-target)) + (string-append "PREFIX=" (assoc-ref %outputs "out")) + "USE_STANDARD_TMPFILE=1" + "USE_SYSTEM_MINIZIP=1") + #:phases + (modify-phases %standard-phases + (delete 'configure)))) ; no configure script + (native-inputs + `(("python-pytest" ,python-pytest))) + (inputs + `(("minizip" ,minizip))) + (home-page "https://github.com/jmcnamara/libxlsxwriter") + (synopsis "C library for creating Excel XLSX files") + (description + "Libxlsxwriter is a C library that can be used to write text, numbers, +formulas and hyperlinks to multiple worksheets in an Excel 2007+ XLSX file.") + (license (list license:bsd-2 + license:public-domain)))) ; third_party/md5 + ;; This is the latest stable release. (define-public libxmlplusplus (package |