diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1214a0b708..fc0ce4a166 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -615,6 +615,35 @@ RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.") (license license:gpl2))) +(define-public python2-pbcore + (package + (name "python2-pbcore") + (version "0.9.3") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/PacificBiosciences/pbcore/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1z46rwjac93jm87cbj2zgjg6qvsgs65140wkbbxsvxps7ai4pm09")))) + (build-system python-build-system) + (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7 + (inputs + `(("python-cython" ,python2-cython) + ("python-numpy" ,python2-numpy) + ("python-pysam" ,python2-pysam) + ("python-h5py" ,python2-h5py))) + (native-inputs + `(("python-setuptools" ,python2-setuptools))) + (home-page "http://pacificbiosciences.github.io/pbcore/") + (synopsis "Library for reading and writing PacBio data files") + (description + "The pbcore package provides Python APIs for interacting with PacBio data +files and writing bioinformatics applications.") + (license license:bsd-3))) + (define-public rseqc (package (name "rseqc") |