diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 596e80a9f9..8ec7a6d90d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2600,6 +2600,36 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-structuralvariantannotation + (package + (name "r-structuralvariantannotation") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "StructuralVariantAnnotation" version)) + (sha256 + (base32 + "0ff40703iyf5wk77hbqhphfxnzc2wcshnjhvh66c5l0jvj9z8xvc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-dplyr" ,r-dplyr) + ("r-genomicranges" ,r-genomicranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-stringr" ,r-stringr) + ("r-assertthat" ,r-assertthat) + ("r-variantannotation" ,r-variantannotation))) + (home-page "https://bioconductor.org/packages/StructuralVariantAnnotation/") + (synopsis "R package designed to simplify structural variant analysis") + (description + "This package contains useful helper functions for dealing with structural +variants in VCF format. The packages contains functions for parsing VCFs from +a number of popular callers as well as functions for dealing with breakpoints +involving two separate genomic loci encoded as GRanges objects.") + (license license:gpl3))) + (define-public r-summarizedexperiment (package (name "r-summarizedexperiment") |