diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 5 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 13f16ce026..8267ae12ac 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4212,7 +4212,7 @@ bases are detected.") (define-public diamond (package (name "diamond") - (version "0.9.30") + (version "2.1.6") (source (origin (method git-fetch) (uri (git-reference @@ -4221,18 +4221,11 @@ bases are detected.") (file-name (git-file-name name version)) (sha256 (base32 - "0k6f3kb6cniw11xw6763kkbs1sl0yack7xsy7q5fl5v170ssphq4")))) + "0kb17jwlsrvgswfahzznrffv1i6ybwwmq99qs7iga5yzbx64jp6q")))) (build-system cmake-build-system) (arguments - '(#:tests? #f ; no "check" target - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'remove-native-compilation - (lambda _ - (substitute* "CMakeLists.txt" (("-march=native") "")) - #t))))) - (inputs - (list zlib)) + (list #:configure-flags '(list "-DX86=OFF"))) ;avoid SSE4 and AVX2 + (inputs (list zlib)) (home-page "https://github.com/bbuchfink/diamond") (synopsis "Accelerated BLAST compatible local sequence aligner") (description @@ -4241,7 +4234,7 @@ translated DNA query sequences against a protein reference database (BLASTP and BLASTX alignment mode). The speedup over BLAST is up to 20,000 on short reads at a typical sensitivity of 90-99% relative to BLAST depending on the data and settings.") - (license license:agpl3+))) + (license license:gpl3+))) (define-public discrover (package |