diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c502caf8ec..cf33e4200d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -40,6 +40,7 @@ #:use-module (gnu packages boost) #:use-module (gnu packages compression) #:use-module (gnu packages cpio) + #:use-module (gnu packages curl) #:use-module (gnu packages file) #:use-module (gnu packages gawk) #:use-module (gnu packages gcc) @@ -1081,6 +1082,52 @@ preparation protocols.") other types of unwanted sequence from high-throughput sequencing reads.") (license license:expat))) +(define-public libbigwig + (package + (name "libbigwig") + (version "0.1.4") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/dpryan79/libBigWig/" + "archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1")))) + (build-system gnu-build-system) + (arguments + `(#:test-target "test" + #:make-flags + (list "CC=gcc" + (string-append "prefix=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'check 'disable-curl-test + (lambda _ + (substitute* "Makefile" + (("./test/testRemote.*") "")) + #t)) + ;; This has been fixed with the upstream commit 4ff6959cd8a0, but + ;; there has not yet been a release containing this change. + (add-before 'install 'create-target-dirs + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (mkdir-p (string-append out "/lib")) + (mkdir-p (string-append out "/include")) + #t)))))) + (inputs + `(("zlib" ,zlib) + ("curl" ,curl))) + (native-inputs + `(("doxygen" ,doxygen))) + (home-page "https://github.com/dpryan79/libBigWig") + (synopsis "C library for handling bigWig files") + (description + "This package provides a C library for parsing local and remote BigWig +files.") + (license license:expat))) + (define-public deeptools (package (name "deeptools") |