diff options
Diffstat (limited to 'gnu/packages')
102 files changed, 3722 insertions, 2074 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index a7336066ef..7e26e76f4a 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -7,6 +7,7 @@ ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -577,27 +578,34 @@ cosine/ sine transforms or DCT/DST).") (define-public eigen (package (name "eigen") - (version "3.2.9") + (version "3.3.4") (source (origin (method url-fetch) (uri (string-append "https://bitbucket.org/eigen/eigen/get/" version ".tar.bz2")) (sha256 (base32 - "1zs5b210mq7nyanky07li6456rrd0xv2nxf6sl2lhkzdq5p067jd")) + "19m4406jvqnwh7kpcvx1lfx2vdc5zwia5q9ayv89bimg1gmln9fx")) (file-name (string-append name "-" version ".tar.bz2")) + (patches (search-patches "eigen-arm-neon-fixes.patch")) (modules '((guix build utils))) (snippet ;; There are 3 test failures in the "unsupported" directory, ;; but maintainers say it's a known issue and it's unsupported ;; anyway, so just skip them. - '(substitute* "CMakeLists.txt" - (("add_subdirectory\\(unsupported\\)") - "# Do not build the tests for unsupported features.\n") - ;; Work around - ;; <http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1114>. - (("\"include/eigen3\"") - "\"${CMAKE_INSTALL_PREFIX}/include/eigen3\""))))) + '(begin + (substitute* "CMakeLists.txt" + (("add_subdirectory\\(unsupported\\)") + "# Do not build the tests for unsupported features.\n") + ;; Work around + ;; <http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1114>. + (("\"include/eigen3\"") + "\"${CMAKE_INSTALL_PREFIX}/include/eigen3\"")) + (substitute* "test/bdcsvd.cpp" + ;; See + ;; https://bitbucket.org/eigen/eigen/commits/ea8c22ce6920e982d15245ee41d0531a46a28e5d + ((".*svd_preallocate[^\n]*" &) + (string-append "//" & " // Not supported by BDCSVD"))))))) (build-system cmake-build-system) (arguments '(;; Turn off debugging symbols to save space. @@ -608,6 +616,7 @@ cosine/ sine transforms or DCT/DST).") (lambda _ (let* ((cores (parallel-job-count)) (dash-j (format #f "-j~a" cores))) + (setenv "EIGEN_SEED" "1") ;for reproducibility ;; First build the tests, in parallel. See ;; <http://eigen.tuxfamily.org/index.php?title=Tests>. (and (zero? (system* "make" "buildtests" dash-j)) diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm index 86e0598344..ec8fa05feb 100644 --- a/gnu/packages/aspell.scm +++ b/gnu/packages/aspell.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2013, 2014, 2015, 2017 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015, 2016 Alex Kost <alezost@gmail.com> ;;; Copyright © 2016 John Darrington <jmd@gnu.org> -;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Christopher Andersson <christopher@8bits.nu> ;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org> ;;; Copyright © 2016, 2017 Tobias Geerinckx-Rice <me@tobias.gr> @@ -130,12 +130,20 @@ dictionaries, including personal ones.") (base32 "01p92qj66cqb346gk7hjfynaap5sbcn85xz07kjfdq623ghr8v5s"))) +(define-public aspell-dict-el + (aspell-dictionary "el" "Greek" + #:version "0.08-0" + #:prefix "aspell6-" + #:sha256 + (base32 + "1ljcc30zg2v2h3w5h5jr5im41mw8jbsgvvhdd2cii2yzi8d0zxja"))) + (define-public aspell-dict-en (aspell-dictionary "en" "English" - #:version "2017.01.22-0" + #:version "2017.08.24-0" #:sha256 (base32 - "1qamzpw1fsnn5n9jpsnnnzqj1a0m0xvsikmkdp5a6pmb7sp3ziwk"))) + "0z2vvm1by485cm0sna21cmw6zb771c2l2lnn676zmrwm46q65d89"))) (define-public aspell-dict-eo (aspell-dictionary "eo" "Esperanto" @@ -159,12 +167,19 @@ dictionaries, including personal ones.") (base32 "14ffy9mn5jqqpp437kannc3559bfdrpk7r36ljkzjalxa53i0hpr"))) -(define-public aspell-dict-ru - (aspell-dictionary "ru" "Russian" - #:version "0.99f7-1" +(define-public aspell-dict-grc + (aspell-dictionary "grc" "Ancient Greek" + #:version "0.02-0" #:sha256 (base32 - "0ip6nq43hcr7vvzbv4lwwmlwgfa60hrhsldh9xy3zg2prv6bcaaw"))) + "1zxr8958v37v260fkqd4pg37ns5h5kyqm54hn1hg70wq5cz8h512"))) + +(define-public aspell-dict-he + (aspell-dictionary "he" "Hebrew" + #:version "1.0-0" + #:sha256 + (base32 + "13bhbghx5b8g0119g3wxd4n8mlf707y41vlf59irxjj0kynankfn"))) (define-public aspell-dict-it (aspell-dictionary "it" "Italian" @@ -181,12 +196,20 @@ dictionaries, including personal ones.") (base32 "0ffb87yjsh211hllpc4b9khqqrblial4pzi1h9r3v465z1yhn3j4"))) -(define-public aspell-dict-he - (aspell-dictionary "he" "Hebrew" - #:version "1.0-0" +(define-public aspell-dict-pt-br + (aspell-dictionary "pt-br" "Brazilian Portuguese" + #:version "20090702-0" + #:prefix "aspell6-" #:sha256 (base32 - "13bhbghx5b8g0119g3wxd4n8mlf707y41vlf59irxjj0kynankfn"))) + "1y09lx9zf2rnp55r16b2vgj953l3538z1vaqgflg9mdvm555bz3p"))) + +(define-public aspell-dict-ru + (aspell-dictionary "ru" "Russian" + #:version "0.99f7-1" + #:sha256 + (base32 + "0ip6nq43hcr7vvzbv4lwwmlwgfa60hrhsldh9xy3zg2prv6bcaaw"))) (define-public aspell-dict-sv (aspell-dictionary "sv" "Swedish" @@ -196,29 +219,6 @@ dictionaries, including personal ones.") (base32 "02jwkjhr32kvyibnyzgx3smbnm576jwdzg3avdf6zxwckhy5fw4v"))) -(define-public aspell-dict-el - (aspell-dictionary "el" "Greek" - #:version "0.08-0" - #:prefix "aspell6-" - #:sha256 - (base32 - "1ljcc30zg2v2h3w5h5jr5im41mw8jbsgvvhdd2cii2yzi8d0zxja"))) - -(define-public aspell-dict-grc - (aspell-dictionary "grc" "Ancient Greek" - #:version "0.02-0" - #:sha256 - (base32 - "1zxr8958v37v260fkqd4pg37ns5h5kyqm54hn1hg70wq5cz8h512"))) - -(define-public aspell-dict-pt-br - (aspell-dictionary "pt-br" "Brazilian Portuguese" - #:version "20090702-0" - #:prefix "aspell6-" - #:sha256 - (base32 - "1y09lx9zf2rnp55r16b2vgj953l3538z1vaqgflg9mdvm555bz3p"))) - ;;; ;;; Hunspell packages made from the Aspell word lists. diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index 4f6e4a4095..867b7ceca0 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -222,7 +222,7 @@ namespace ARDOUR { const char* revision = \"" version "\" ; }"))))) (modify-phases %standard-phases (add-after 'unpack 'set-rpath-in-LDFLAGS - ,(ardour-rpath-phase (version-prefix version 1)))) + ,(ardour-rpath-phase (version-major version)))) #:test-target "test" #:python ,python-2)) (inputs @@ -1993,6 +1993,38 @@ and ALSA.") into various outputs and to start, stop and configure jackd") (license license:gpl2+))) +(define-public qjackrcd + (package + (name "qjackrcd") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/qjackrcd/stable/" + "qjackrcd-" version ".tar.gz")) + (sha256 + (base32 + "0xpnhzbwg5c60n5dhwln5p7qm191nvmf23la88zxfqx1jv0mmxxb")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (zero? (system* "qmake" + (string-append "PREFIX=" + (assoc-ref outputs "out"))))))))) + (native-inputs + `(("qtbase" ,qtbase))) ; for qmake + (inputs + `(("jack" ,jack-1) + ("libsndfile" ,libsndfile) + ("qtbase" ,qtbase))) + (home-page "https://sourceforge.net/projects/qjackrcd/") + (synopsis "Stereo audio recorder for JACK") + (description "QJackRcd is a simple graphical stereo recorder for JACK +supporting silence processing for automatic pause, file splitting, and +background file post-processing.") + (license license:gpl2+))) (define-public raul (package @@ -3136,3 +3168,106 @@ on the ALSA software PCM plugin.") customized and extended using either the s7 Scheme implementation (included in the Snd sources), Ruby, or Forth.") (license (license:non-copyleft "file://COPYING")))) + +(define-public noise-repellent + (package + (name "noise-repellent") + (version "0.1.4") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/lucianodato/noise-repellent.git") + (commit version))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0rd3dlmk3vivjmcr6x2x860y0j1d49c2j95j6ny50v184mwvn11j")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags + (list "CC=gcc" + (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:tests? #f ; there are none + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (inputs + `(("lv2" ,lv2) + ("fftwf" ,fftwf))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/lucianodato/noise-repellent") + (synopsis "LV2 plugin for broadband noise reduction") + (description "Noise Repellent is an LV2 plugin to reduce noise. It has +the following features: + +@enumerate +@item Spectral gating and spectral subtraction suppression rule +@item Adaptive and manual noise thresholds estimation +@item Adjustable noise floor +@item Adjustable offset of thresholds to perform over-subtraction +@item Time smoothing and a masking estimation to reduce artifacts +@item Basic onset detector to avoid transients suppression +@item Whitening of the noise floor to mask artifacts and to recover higher + frequencies +@item Option to listen to the residual signal +@item Soft bypass +@item Noise profile saved with the session +@end enumerate +") + (license license:lgpl3+))) + +(define-public cli-visualizer + (package + (name "cli-visualizer") + (version "1.6") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/dpayne/cli-visualizer/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "07zkm87f2fr8kc6531zrkya7q81sdanm6813y2f54mg13g41y6hi")))) + (build-system gnu-build-system) + (native-inputs + `(("which" ,which))) + (inputs + `(("fftw" ,fftw) + ("googletest" ,googletest) + ("ncurses" ,ncurses) + ("pulseaudio" ,pulseaudio))) + (arguments + '(#:test-target "test" + #:make-flags + (list (string-append "PREFIX=" %output "/bin/") "ENABLE_PULSE=1") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-sudo + (lambda _ + (substitute* "install.sh" (("sudo") "")) + #t)) + (add-before 'check 'set-check-environment + (lambda _ + (setenv "CXX" "g++") + (setenv "CC" "gcc") + #t)) + (add-before 'install 'make-prefix + (lambda _ + (mkdir-p (string-append (assoc-ref %outputs "out") "/bin")) + #t)) + (add-after 'install 'data + (lambda _ + (for-each (lambda (file) + (install-file file + (string-append (assoc-ref %outputs "out") + "/share/doc"))) + (find-files "examples")) + #t))))) + (home-page "https://github.com/dpayne/cli-visualizer/") + (synopsis "Command-line audio visualizer") + (description "@code{cli-visualizer} displays fast-Fourier +transforms (FFTs) of the sound being played, as well as other graphical +representations.") + (license license:expat))) diff --git a/gnu/packages/axoloti.scm b/gnu/packages/axoloti.scm index 8ce4a63131..4963bb33cf 100644 --- a/gnu/packages/axoloti.scm +++ b/gnu/packages/axoloti.scm @@ -189,7 +189,7 @@ `(("chibios" ,(origin (method url-fetch) - (uri "mirror://sourceforge/chibios/ChibiOS_RT%20stable/Version%202.6.9/ChibiOS_2.6.9.zip") + (uri "mirror://sourceforge/chibios/ChibiOS%20GPL3/Version%202.6.9/ChibiOS_2.6.9.zip") (sha256 (base32 "0lb5s8pkj80mqhsy47mmq0lqk34s2a2m3xagzihalvabwd0frhlj")))) diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm index 2ee0d5336b..28d618381f 100644 --- a/gnu/packages/backup.scm +++ b/gnu/packages/backup.scm @@ -456,6 +456,7 @@ detection, and lossless compression.") (source (origin (method url-fetch) (uri (pypi-uri "borgbackup" version)) + (patches (search-patches "borg-fix-archive-corruption-bug.patch")) (sha256 (base32 "1rvn8b6clzd1r317r9jkvk34r31risi0dxfjc7jffhnwasck4anc")) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fedc8aec4c..cf026ab24e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -421,7 +421,7 @@ computational cluster.") (define-public bedtools (package (name "bedtools") - (version "2.27.0") + (version "2.27.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/arq5x/bedtools2/releases/" @@ -429,7 +429,7 @@ computational cluster.") "bedtools-" version ".tar.gz")) (sha256 (base32 - "0q6fsiz4s52yzxs6h2vxwq95fsi3n64wkpinkk05mfh4dmhybw74")))) + "1ndg5yknrxl4djx8ddzgk12rrbiidfpmkkg5z3f95jzryfxarhn8")))) (build-system gnu-build-system) (arguments '(#:test-target "test" @@ -466,7 +466,19 @@ BED, GFF/GTF, VCF.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf")))))) + "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf")))) + (arguments + '(#:test-target "test" + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) + (for-each (lambda (file) + (install-file file bin)) + (find-files "bin" ".*"))) + #t))))))) (define-public ribotaper (package @@ -2061,7 +2073,7 @@ identify enrichments with functional annotations of the genome.") (define-public diamond (package (name "diamond") - (version "0.9.13") + (version "0.9.14") (source (origin (method url-fetch) (uri (string-append @@ -2070,7 +2082,7 @@ identify enrichments with functional annotations of the genome.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1pi5ncqwmynqpmmp3j3lhnqrjhj34sr6wpmsgrpkv3wyxx22fv86")))) + "07li3chjdna0wjyh680j3bhwiqh1fbfq9dy9jxxs82mc0rw0m1yy")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; no "check" target @@ -2905,7 +2917,7 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).") (method url-fetch) (uri (string-append "http://eddylab.org/software/hmmer" - (version-prefix version 1) "/" + (version-major version) "/" version "/hmmer-" version ".tar.gz")) (sha256 (base32 @@ -9385,83 +9397,89 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") (license license:artistic2.0))) (define-public r-seurat - ;; Source releases are only made for new x.0 versions. All newer versions - ;; are only released as pre-built binaries. At the time of this writing the - ;; latest binary release is 1.4.0.12, which is equivalent to this commit. - (let ((commit "fccb77d1452c35ee47e47ebf8e87bddb59f3b08d") - (revision "1")) - (package - (name "r-seurat") - (version (string-append "1.4.0.12-" revision "." (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/satijalab/seurat") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "101wq3aqrdmbfi3lqmq4iivk9iwbf10d4z216ss25hf7n9091cyl")) - ;; Delete pre-built jar. - (snippet - '(begin (delete-file "inst/java/ModularityOptimizer.jar") - #t)))) - (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'build-jar - (lambda* (#:key inputs #:allow-other-keys) - (let ((classesdir "tmp-classes")) - (setenv "JAVA_HOME" (assoc-ref inputs "jdk")) - (mkdir classesdir) - (and (zero? (apply system* `("javac" "-d" ,classesdir - ,@(find-files "java" "\\.java$")))) - (zero? (system* "jar" - "-cf" "inst/java/ModularityOptimizer.jar" - "-C" classesdir "."))))))))) - (native-inputs - `(("jdk" ,icedtea "jdk"))) - (propagated-inputs - `(("r-ape" ,r-ape) - ("r-caret" ,r-caret) - ("r-cowplot" ,r-cowplot) - ("r-dplyr" ,r-dplyr) - ("r-fastica" ,r-fastica) - ("r-fnn" ,r-fnn) - ("r-fpc" ,r-fpc) - ("r-gdata" ,r-gdata) - ("r-ggplot2" ,r-ggplot2) - ("r-gplots" ,r-gplots) - ("r-gridextra" ,r-gridextra) - ("r-igraph" ,r-igraph) - ("r-irlba" ,r-irlba) - ("r-lars" ,r-lars) - ("r-mixtools" ,r-mixtools) - ("r-pbapply" ,r-pbapply) - ("r-plyr" ,r-plyr) - ("r-ranger" ,r-ranger) - ("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-rcpp" ,r-rcpp) - ("r-rcppeigen" ,r-rcppeigen) - ("r-rcppprogress" ,r-rcppprogress) - ("r-reshape2" ,r-reshape2) - ("r-rocr" ,r-rocr) - ("r-rtsne" ,r-rtsne) - ("r-stringr" ,r-stringr) - ("r-tclust" ,r-tclust) - ("r-tsne" ,r-tsne) - ("r-vgam" ,r-vgam))) - (home-page "http://www.satijalab.org/seurat") - (synopsis "Seurat is an R toolkit for single cell genomics") - (description - "This package is an R package designed for QC, analysis, and + (package + (name "r-seurat") + (version "2.1.0") + (source (origin + (method url-fetch) + (uri (cran-uri "Seurat" version)) + (sha256 + (base32 + "1hqaq6bciikrsyw157w8fn4jw885air7xbkxrmism93rp4qx483x")) + ;; Delete pre-built jar. + (snippet + '(begin (delete-file "inst/java/ModularityOptimizer.jar") + #t)))) + (properties `((upstream-name . "Seurat"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'build-jar + (lambda* (#:key inputs #:allow-other-keys) + (let ((classesdir "tmp-classes")) + (setenv "JAVA_HOME" (assoc-ref inputs "jdk")) + (mkdir classesdir) + (with-output-to-file "manifest" + (lambda _ + (display "Manifest-Version: 1.0 +Main-Class: ModularityOptimizer\n"))) + (and (zero? (apply system* `("javac" "-d" ,classesdir + ,@(find-files "java" "\\.java$")))) + (zero? (system* "jar" + "-cmf" "manifest" + "inst/java/ModularityOptimizer.jar" + "-C" classesdir "."))))))))) + (native-inputs + `(("jdk" ,icedtea "jdk"))) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-caret" ,r-caret) + ("r-cowplot" ,r-cowplot) + ("r-diffusionmap" ,r-diffusionmap) + ("r-dplyr" ,r-dplyr) + ("r-dtw" ,r-dtw) + ("r-fnn" ,r-fnn) + ("r-fpc" ,r-fpc) + ("r-gdata" ,r-gdata) + ("r-ggjoy" ,r-ggjoy) + ("r-ggplot2" ,r-ggplot2) + ("r-gplots" ,r-gplots) + ("r-gridextra" ,r-gridextra) + ("r-hmisc" ,r-hmisc) + ("r-ica" ,r-ica) + ("r-igraph" ,r-igraph) + ("r-irlba" ,r-irlba) + ("r-lars" ,r-lars) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-mixtools" ,r-mixtools) + ("r-nmf" ,r-nmf) + ("r-pbapply" ,r-pbapply) + ("r-plotly" ,r-plotly) + ("r-ranger" ,r-ranger) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rcppprogress" ,r-rcppprogress) + ("r-reshape2" ,r-reshape2) + ("r-rocr" ,r-rocr) + ("r-rtsne" ,r-rtsne) + ("r-sdmtools" ,r-sdmtools) + ("r-stringr" ,r-stringr) + ("r-tclust" ,r-tclust) + ("r-tidyr" ,r-tidyr) + ("r-tsne" ,r-tsne) + ("r-vgam" ,r-vgam))) + (home-page "http://www.satijalab.org/seurat") + (synopsis "Seurat is an R toolkit for single cell genomics") + (description + "This package is an R package designed for QC, analysis, and exploration of single cell RNA-seq data. It easily enables widely-used analytical techniques, including the identification of highly variable genes, dimensionality reduction; PCA, ICA, t-SNE, standard unsupervised clustering algorithms; density clustering, hierarchical clustering, k-means, and the discovery of differentially expressed genes and markers.") - (license license:gpl3)))) + (license license:gpl3))) (define-public r-aroma-light (package diff --git a/gnu/packages/build-tools.scm b/gnu/packages/build-tools.scm index 00a286150a..7c0faca9a2 100644 --- a/gnu/packages/build-tools.scm +++ b/gnu/packages/build-tools.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Corentin Bocquillon <corentin@nybble.fr> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -70,7 +71,7 @@ makes a few sacrifices to acquire fast full and incremental build times.") (define-public meson (package (name "meson") - (version "0.43.0") + (version "0.44.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/mesonbuild/meson/" @@ -78,7 +79,7 @@ makes a few sacrifices to acquire fast full and incremental build times.") version ".tar.gz")) (sha256 (base32 - "0h3k0m45004ay1hzz9r66fkl1kwizaigxahyrlabyw0d1slyq4y5")))) + "06r8limj38mv884s5riiz6lpzw37cvhbf9jd0smzcbi7fwmv3yah")))) (build-system python-build-system) (inputs `(("ninja", ninja))) (propagated-inputs `(("python" ,python))) diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm index b532057605..4b5b8e8bc7 100644 --- a/gnu/packages/chez.scm +++ b/gnu/packages/chez.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -61,14 +62,14 @@ (define-public chez-scheme (package (name "chez-scheme") - (version "9.4") + (version "9.5") (source (origin (method url-fetch) (uri (string-append "https://github.com/cisco/ChezScheme/archive/" "v" version ".tar.gz")) (sha256 - (base32 "0lprmpsjg2plc6ykgkz482zyvhkzv6gd0vnar71ph21h6zknyklz")) + (base32 "135991hspq0grf26pvl2lkwhp92yz204h6rgiwyym0x6v0xzknd1")) (file-name (string-append "chez-scheme-" version ".tar.gz")))) (build-system gnu-build-system) (inputs @@ -104,7 +105,15 @@ (add-after 'unpack 'patch-processor-detection (lambda _ (substitute* "configure" (("uname -a") "uname -m")) - #t)) + #t)) + (add-after 'unpack 'patch-broken-documentation + (lambda _ + ;; Work around an oversight in the 9.5 release tarball that causes + ;; building the documentation to fail. This should be fixed in the + ;; next one; see <https://github.com/cisco/ChezScheme/issues/209>. + (substitute* "csug/copyright.stex" + (("\\\\INSERTREVISIONMONTHSPACEYEAR" ) + "October 2017")))) ; tarball release date ;; Adapt the custom 'configure' script. (replace 'configure (lambda* (#:key inputs outputs #:allow-other-keys) diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm index 859dfd0ca7..a094f0a465 100644 --- a/gnu/packages/code.scm +++ b/gnu/packages/code.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2017 Andy Wingo <wingo@igalia.com> @@ -99,14 +99,14 @@ highlighting your own code that seemed comprehensible when you wrote it.") (define-public global ; a global variable (package (name "global") - (version "6.5.7") + (version "6.6.1") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/global/global-" version ".tar.gz")) (sha256 (base32 - "0cnd7a7d1pl46yk15q6mnr9i9w3xi8pxgchw4ia9njgr4jjqzh6r")))) + "1r2r6z41lmgbszzwx7h3jqhwnqb9jj32pndzhr3lb0id710c8gcl")))) (build-system gnu-build-system) (inputs `(("ncurses" ,ncurses) ("libltdl" ,libltdl) diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 0cee54848c..fc3aea31fe 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -661,7 +661,7 @@ compression library.") (define-public perl-compress-raw-zlib (package (name "perl-compress-raw-zlib") - (version "2.074") + (version "2.076") (source (origin (method url-fetch) @@ -669,7 +669,7 @@ compression library.") "Compress-Raw-Zlib-" version ".tar.gz")) (sha256 (base32 - "08bpx9v6i40n54rdcj6invlj294z20amrl8wvwf9b83aldwdwsd3")))) + "1al2h0i6mspldmlf5c09fy5a4j8swsxd31v6zi8zx9iyqk1lw7in")))) (build-system perl-build-system) (inputs `(("zlib" ,zlib))) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 11d30815cf..e7c9c6588a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1642,3 +1642,134 @@ originally inspired by the book \"Visualizing Categorical Data\" by Michael Friendly and is now the main support package for a new book, \"Discrete Data Analysis with R\" by Michael Friendly and David Meyer (2015).") (license license:gpl2))) + +(define-public r-ica + (package + (name "r-ica") + (version "1.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ica" version)) + (sha256 + (base32 + "1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/ica/") + (synopsis "Independent component analysis") + (description "This package provides tools for @dfn{Independent Component +Analysis} (ICA) using various algorithms: FastICA, +Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization +of Eigenmatrices} (JADE).") + (license license:gpl2+))) + +(define-public r-dtw + (package + (name "r-dtw") + (version "1.18-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dtw" version)) + (sha256 + (base32 + "1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr")))) + (build-system r-build-system) + (propagated-inputs `(("r-proxy" ,r-proxy))) + (home-page "http://dtw.r-forge.r-project.org/") + (synopsis "Dynamic Time Warping Algorithms") + (description "This package provides a comprehensive implementation of +@dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the +optimal (least cumulative distance) alignment between points of two time +series. Common DTW variants covered include local (slope) and global (window) +constraints, subsequence matches, arbitrary distance definitions, +normalizations, minimum variance matching, and so on.") + (license license:gpl2+))) + +(define-public r-sdmtools + (package + (name "r-sdmtools") + (version "1.1-221") + (source + (origin + (method url-fetch) + (uri (cran-uri "SDMTools" version)) + (sha256 + (base32 + "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6")))) + (properties `((upstream-name . "SDMTools"))) + (build-system r-build-system) + (propagated-inputs `(("r-r-utils" ,r-r-utils))) + (home-page "http://www.rforge.net/SDMTools/") + (synopsis "Species distribution modelling tools") + (description "This packages provides a set of tools for post processing +the outcomes of species distribution modeling exercises. It includes novel +methods for comparing models and tracking changes in distributions through +time. It further includes methods for visualizing outcomes, selecting +thresholds, calculating measures of accuracy and landscape fragmentation +statistics, etc.") + (license license:gpl3+))) + +(define-public r-scatterplot3d + (package + (name "r-scatterplot3d") + (version "0.3-40") + (source + (origin + (method url-fetch) + (uri (cran-uri "scatterplot3d" version)) + (sha256 + (base32 + "0ababcj87kx7860mica9y2ydlhskxmgj9n46crx036cila512jc2")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/scatterplot3d/") + (synopsis "3D scatter plot") + (description "This package provides an implementation of scatter plots for +plotting. a three dimensional point cloud.") + (license license:gpl2))) + +(define-public r-ggridges + (package + (name "r-ggridges") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggridges" version)) + (sha256 + (base32 + "0kfa3icqdalqdg1klxjrhfl7if35d3wnsiyl86bprw5dyqyh3lh3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-plyr" ,r-plyr) + ("r-scales" ,r-scales))) + (home-page "https://github.com/clauswilke/ggridges") + (synopsis "Ridgeline plots in ggplot2") + (description + "Ridgeline plots provide a convenient way of visualizing changes in +distributions over time or space. This package enables the creation of such +plots in @code{ggplot2}.") + (license license:gpl2))) + +(define-public r-ggjoy + (package + (name "r-ggjoy") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggjoy" version)) + (sha256 + (base32 + "1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-ggridges" ,r-ggridges))) + (home-page "https://github.com/clauswilke/ggjoy") + (synopsis "Joyplots in ggplot2") + (description "Joyplots provide a convenient way of visualizing changes in +distributions over time or space. This package enables the creation of such +plots in @code{ggplot2}.") + (license license:gpl2))) diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm index 7f0240002f..92da952999 100644 --- a/gnu/packages/crypto.scm +++ b/gnu/packages/crypto.scm @@ -61,7 +61,7 @@ (define-public libsodium (package (name "libsodium") - (version "1.0.15") + (version "1.0.16") (source (origin (method url-fetch) (uri (list (string-append @@ -72,7 +72,7 @@ "releases/old/libsodium-" version ".tar.gz"))) (sha256 (base32 - "1x3qw7lsz44vcxpcn1dvwig410phg6gmv31jwj94arrgka3rwspv")))) + "0cq5pn7qcib7q70mm1lgjwj75xdxix27v0xl1xl0kvxww7hwgbgf")))) (build-system gnu-build-system) (synopsis "Portable NaCl-based crypto library") (description diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm index bb2b88d9ff..974ef1c977 100644 --- a/gnu/packages/cups.scm +++ b/gnu/packages/cups.scm @@ -370,14 +370,19 @@ device-specific programs to convert and print many types of files.") (define-public hplip (package (name "hplip") - (version "3.17.10") + (version "3.17.11") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/hplip/hplip/" version "/hplip-" version ".tar.gz")) (sha256 (base32 - "0v27hg856b5z2rilczcbfgz8ksxn0n810g1glac3mxkj8qbl8wqg")))) + "0xda7x7xxjvzn1l0adlvbwcw21crq1r3r79bkf94q3m5i6abx49g")) + (modules '((guix build utils))) + (snippet + ;; Fix type mismatch. + '(substitute* "prnt/hpcups/genPCLm.cpp" + (("boolean") "bool"))))) (build-system gnu-build-system) (home-page "http://hplipopensource.com/") (synopsis "HP Printer Drivers") @@ -437,11 +442,11 @@ device-specific programs to convert and print many types of files.") (("/usr/include/libusb-1.0") (string-append (assoc-ref inputs "libusb") "/include/libusb-1.0")) - (("^\tinstall-dist_hplip_stateDATA") - ;; Remove dependencies on - ;; 'install-dist_hplip_stateDATA' so we don't bail - ;; out while trying to create /var/lib/hplip. - "\t") + (("hplip_statedir =.*$") + ;; Don't bail out while trying to create + ;; /var/lib/hplip. We can safely change its value + ;; here because it's hard-coded in the code anyway. + "hplip_statedir = $(prefix)\n") (("hplip_confdir = /etc/hp") ;; This is only used for installing the default config. (string-append "hplip_confdir = " out @@ -470,12 +475,14 @@ device-specific programs to convert and print many types of files.") ("cups-minimal" ,cups-minimal) ("libusb" ,libusb) ("sane-backends" ,sane-backends-minimal) + ("zlib" ,zlib) ("dbus" ,dbus) ("python-wrapper" ,python-wrapper) ("python" ,python) ;; TODO: Make hp-setup find python-dbus. ("python-dbus" ,python-dbus))) - (native-inputs `(("pkg-config" ,pkg-config))))) + (native-inputs `(("pkg-config" ,pkg-config) + ("perl" ,perl))))) (define-public foomatic-filters (package diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 8f7e428729..1306cf76b2 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -1280,7 +1280,7 @@ module, and nothing else.") (source (origin (method url-fetch) - (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/" + (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/" "SQL-Abstract-" version ".tar.gz")) (sha256 (base32 diff --git a/gnu/packages/datastructures.scm b/gnu/packages/datastructures.scm index 36318ee04e..0c751f4970 100644 --- a/gnu/packages/datastructures.scm +++ b/gnu/packages/datastructures.scm @@ -116,3 +116,58 @@ with the number of cores. liburcu-cds provides efficient data structures based on RCU and lock-free algorithms. These structures include hash tables, queues, stacks, and doubly-linked lists.") (license license:lgpl2.1+))) + +(define-public uthash + (package + (name "uthash") + (version "2.0.2") + (source + (origin + (method url-fetch) + (file-name (string-append name "-" version ".tar.gz")) + (uri (string-append "https://github.com/troydhanson/uthash/archive/v" + version ".tar.gz")) + (sha256 + (base32 + "1la82gdlyl7m8ahdjirigwfh7zjgkc24cvydrqcri0vsvm8iv8rl")))) + (build-system gnu-build-system) + (native-inputs + `(("perl" ,perl))) + (arguments + `(#:make-flags + (list "CC=gcc") + #:phases + (modify-phases %standard-phases + (delete 'configure) ; nothing to configure + (delete 'build) ; nothing to build + (replace 'check + (lambda* (#:key make-flags #:allow-other-keys) + (with-directory-excursion "tests" + (zero? (apply system* "make" + make-flags))))) + (replace 'install + ;; There is no top-level Makefile to do this for us. + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/" ,name)) + (include (string-append out "/include"))) + ;; Don't install HTML files: they're just the below .txt files + ;; dolled up, can be stale, and regeneration requires asciidoc. + (for-each (λ (file) (install-file file doc)) + (find-files "doc" "\\.txt$")) + (for-each (λ (file) (install-file file include)) + (find-files "src" "\\.h$")) + #t)))))) + (home-page "https://troydhanson.github.io/uthash/") + (synopsis + "Hash tables, lists, and other data structures implemented as C macros") + (description + "uthash implements a hash table and a few other basic data structures +as C preprocessor macros. It aims to be minimalistic and efficient: it's +around 1,000 lines of code which, being macros, inline automatically. + +Unlike function calls with fixed prototypes, macros operate on untyped +arguments. Thus, they are able to work with any type of structure and key. +Any C structure can be stored in a hash table by adding @code{UT_hash_handle} +to the structure and choosing one or more fields to act as the key.") + (license license:bsd-2))) diff --git a/gnu/packages/dictionaries.scm b/gnu/packages/dictionaries.scm index 062c29b66d..d96a88b4d1 100644 --- a/gnu/packages/dictionaries.scm +++ b/gnu/packages/dictionaries.scm @@ -23,6 +23,7 @@ #:use-module (guix packages) #:use-module (guix download) #:use-module (guix build-system gnu) + #:use-module (guix build-system python) #:use-module (guix build-system trivial) #:use-module (gnu packages base) #:use-module (gnu packages curl) @@ -206,6 +207,45 @@ It comes with a German-English dictionary with approximately 270,000 entries.") (home-page "http://www-user.tu-chemnitz.de/~fri/ding/") (license gpl2+))) +(define-public grammalecte + (package + (name "grammalecte") + (version "0.6.1") + (source + (origin + (method url-fetch/zipbomb) + (uri (string-append "https://www.dicollecte.org/grammalecte/zip/" + "Grammalecte-fr-v" version ".zip")) + (sha256 + (base32 + "0bl342i7nqbg8swk3fxashg9liyp3jdnix59pndhy41cpm1xln4i")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-setup.py + ;; FIXME: "setup.py" contains a typo in 0.6.1 release. The + ;; issue was reported and fixed upstream + ;; (https://dicollecte.org/thread.php?prj=fr&t=674). This + ;; phase can be removed in next release. + (lambda _ + (substitute* "setup.py" + (("server_options\\.") "grammalecte-server-options.")) + #t))))) + (home-page "https://www.dicollecte.org") + (synopsis "French spelling and grammar checker") + (description "Grammalecte is a grammar checker dedicated to the French +language, derived from Lightproof. + +Grammalecte aims at helping to write a proper French without distracting users +with false positives. This grammar checker follows the principle: the less +false positives, the better; if it cannot know with a good chance if +a dubious expression is wrong, it will keep silent. + +The package provides the command line interface, along with a server +and a Python library.") + (license gpl3+))) + (define-public translate-shell (package (name "translate-shell") diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm index 1cf14993c3..1a00d8cb16 100644 --- a/gnu/packages/emacs.scm +++ b/gnu/packages/emacs.scm @@ -31,6 +31,7 @@ ;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Mike Gerwitz <mtg@gnu.org> +;;; Copyright © 2017 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -377,7 +378,7 @@ when typing parentheses directly or commenting out code line by line.") (define-public git-modes (package - (name "git-modes") + (name "emacs-git-modes") (version "1.2.6") (source (origin (method url-fetch) @@ -396,6 +397,9 @@ when typing parentheses directly or commenting out code line by line.") configuration files, such as .gitattributes, .gitignore, and .git/config.") (license license:gpl3+))) +(define-public git-modes/old-name + (deprecated-package "git-modes" git-modes)) + (define-public emacs-with-editor (package (name "emacs-with-editor") @@ -1972,6 +1976,26 @@ keep pressing the key until it selects what you want. There's also column by drawing a thin line down the length of the editing window.") (license license:gpl3+))) +(define-public emacs-grep-a-lot + (package + (name "emacs-grep-a-lot") + (version "1.0.7") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ZungBang/emacs-grep-a-lot.git") + (commit "9f9f645b9e308a0d887b66864ff97d0fca1ba4ad"))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1f8262mrlinzgnn4m49hbj1hm3c1mvzza24py4b37sasn49546lw")))) + (build-system emacs-build-system) + (home-page "https://github.com/ZungBang/emacs-grep-a-lot") + (synopsis "Enables multiple grep buffers in Emacs") + (description + "This Emacs package allows managing multiple grep buffers.") + (license license:gpl3+))) + (define-public emacs-inf-ruby (package (name "emacs-inf-ruby") @@ -2153,6 +2177,43 @@ evaluated in the browser, just like Emacs does with an inferior Lisp process in Lisp modes.") (license license:unlicense))) +(define-public emacs-string-inflection + (package + (name "emacs-string-inflection") + (version "1.0.6") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/akicho8/string-inflection") + (commit "a150e7bdda60b7824d3a936750ce23f73b0e4edd"))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1k0sm552iawi49v4zis6dbb81d1rzgky9v0dpv7nj31gnb7bmy7k")))) + (build-system emacs-build-system) + (native-inputs + `(("ert-runner" ,ert-runner))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'install 'check + (lambda _ + (zero? (system* "ert-runner"))))))) + (home-page "https://github.com/akicho8/string-inflection") + (synopsis "Convert symbol names between different naming conventions") + (description + "This Emacs package provides convenient methods for manipulating the +naming style of a symbol. It supports different naming conventions such as: + +@enumerate +@item camel case +@item Pascal case +@item all upper case +@item lower case separated by underscore +@item etc... +@end enumerate\n") + (license license:gpl2+))) + (define-public emacs-stripe-buffer (package (name "emacs-stripe-buffer") @@ -2195,6 +2256,31 @@ tables.") mode-line.") (license license:gpl2+))) +(define-public emacs-robe + (package + (name "emacs-robe") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/dgutov/robe/" + "archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1vp45y99fwj88z04ah4yppz4z568qcib646az6m9az5ar0f203br")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-inf-ruby" ,emacs-inf-ruby))) + (home-page "https://github.com/dgutov/robe") + (synopsis "Ruby code assistance tool for Emacs") + (description + "Robe can provide information on loaded classes and modules in Ruby code, +as well as where methods are defined. This allows the user to jump to method +definitions, modules and classes, display method documentation and provide +method and constant name completion.") + (license license:gpl3+))) + (define-public emacs-rspec (package (name "emacs-rspec") @@ -2969,7 +3055,7 @@ single theme but a set of guidelines with numerous implementations.") (define-public emacs-smartparens (package (name "emacs-smartparens") - (version "1.10.1") + (version "1.11.0") (source (origin (method url-fetch) (uri (string-append @@ -2978,7 +3064,7 @@ single theme but a set of guidelines with numerous implementations.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1nwsi6fbbxjq3r22r6knmx71la3g0lmwfb95i9q4k138gn0m2l3i")))) + "0q5as813xs8y29i3v2rm97phd6m7xsmmw6hwbvx57gwmi8i1c409")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-dash" ,emacs-dash))) (home-page "https://github.com/Fuco1/smartparens") @@ -4897,7 +4983,7 @@ highlights quasi-quoted expressions.") (define-public emacspeak (package (name "emacspeak") - (version "46.0") + (version "47.0") (source (origin (method url-fetch) @@ -4906,11 +4992,7 @@ highlights quasi-quoted expressions.") version "/emacspeak-" version ".tar.bz2")) (sha256 (base32 - "15x4yfp3wl2fxm1nkx6pz3clw6zyw3argcsqxgcx6pa28sivlg2n")) - (modules '((guix build utils))) - (snippet - ;; Delete the bundled byte-compiled elisp files. - '(for-each delete-file (find-files "lisp" "\\.elc$"))))) + "0xbcc266x752y68s3g096m161irzvsqym3axzqn8rb276a8x55n7")))) (build-system gnu-build-system) (arguments '(#:make-flags (list (string-append "prefix=" @@ -4920,6 +5002,7 @@ highlights quasi-quoted expressions.") (replace 'configure (lambda _ ;; Configure Emacspeak according to etc/install.org. + (setenv "SHELL" (which "sh")) (zero? (system* "make" "config")))) (add-after 'build 'build-espeak (lambda _ @@ -4998,6 +5081,28 @@ you'd get with @kbd{M-q} using @code{adaptive-fill-mode}, but without actually changing the buffer's text.") (license license:gpl3+))) +(define-public emacs-diff-hl + (package + (name "emacs-diff-hl") + (version "1.8.4") + (source + (origin + (method url-fetch) + (uri (string-append "http://elpa.gnu.org/packages/diff-hl-" + version ".tar")) + (sha256 + (base32 + "0axhidc3cym7a2x4rpxf4745qss9s9ajyg4s9h5b4zn7v7fyp71n")))) + (build-system emacs-build-system) + (home-page "https://github.com/dgutov/diff-hl") + (synopsis + "Highlight uncommitted changes using VC") + (description + "@code{diff-hl-mode} highlights uncommitted changes on the side of the +window (using the fringe, by default), allows you to jump between +the hunks and revert them selectively.") + (license license:gpl3+))) + (define-public emacs-diminish (package (name "emacs-diminish") @@ -5386,7 +5491,7 @@ It should enable you to implement low-level X11 applications.") (define-public emacs-exwm (package (name "emacs-exwm") - (version "0.15") + (version "0.16") (synopsis "Emacs X window manager") (source (origin (method url-fetch) @@ -5394,7 +5499,7 @@ It should enable you to implement low-level X11 applications.") version ".tar")) (sha256 (base32 - "1y7nqry9y0a99bsdqkk9f554vczfw4sz6raadw3138835qy697jg")))) + "0c4w5k9lzqj8yzhdqipdb4fs7ld2qklc6s137104jnfdvmrwcv2i")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-xelb" ,emacs-xelb))) @@ -5930,6 +6035,35 @@ available key bindings that follow C-x (or as many as space allows given your settings).") (license license:gpl3+))) +(define-public emacs-ws-butler + (package + (name "emacs-ws-butler") + (version "0.6") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/lewang/ws-butler.git") + (commit "323b651dd70ee40a25accc940b8f80c3a3185205"))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1a4b0lsmwq84qfx51c5xy4fryhb1ysld4fhgw2vr37izf53379sb")))) + (build-system emacs-build-system) + (native-inputs + `(("ert-runner" ,ert-runner))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'install 'check + (lambda _ + (zero? (system* "ert-runner" "tests"))))))) + (home-page "https://github.com/lewang/ws-butler") + (synopsis "Trim spaces from end of lines") + (description + "This Emacs package automatically and unobtrusively trims whitespace +characters from end of lines.") + (license license:gpl3+))) + (define-public emacs-org-edit-latex (package (name "emacs-org-edit-latex") @@ -6272,6 +6406,28 @@ and shell-command prompts that are based on bash completion.") let users kill or mark things easily.") (license license:gpl3+))) +(define-public emacs-csv-mode + (package + (name "emacs-csv-mode") + (version "1.7") + (source + (origin + (method url-fetch) + (uri (string-append "http://elpa.gnu.org/packages/csv-mode-" + version ".el")) + (sha256 + (base32 + "0r4bip0w3h55i8h6sxh06czf294mrhavybz0zypzrjw91m1bi7z6")))) + (build-system emacs-build-system) + (home-page + "http://elpa.gnu.org/packages/csv-mode.html") + (synopsis + "Major mode for editing comma/char separated values") + (description + "This Emacs package implements CSV mode, a major mode for editing records +in a generalized CSV (character-separated values) format.") + (license license:gpl3+))) + (define-public emacs-transmission (package (name "emacs-transmission") diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm index 033d0032e7..029b5a5c24 100644 --- a/gnu/packages/embedded.scm +++ b/gnu/packages/embedded.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017 Theodoros Foradis <theodoros@foradis.org> ;;; Copyright © 2016 David Craven <david@craven.ch> +;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -932,3 +933,40 @@ int fast_build_block_buffer")) MPSSE (Multi-Protocol Synchronous Serial Engine) adapter by FTDI that can do SPI, I2C, JTAG.") (license license:gpl2+))) + +(define-public picprog + (package + (name "picprog") + (version "1.9.1") + (source (origin + (method url-fetch) + (uri (string-append "http://www.iki.fi/hyvatti/pic/picprog-" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1r04hg1n3v2jf915qr05la3q9cxy7a5jnh9cc98j04lh6c9p4x85")) + (patches (search-patches "picprog-non-intel-support.patch")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; No tests exist. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-paths + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "Makefile" + (("/usr/local") (assoc-ref outputs "out")) + ((" -o 0 -g 0 ") " ") + (("testport") "")) + #t)) + (add-before 'install 'mkdir + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (mkdir-p (string-append out "/bin")) + (mkdir-p (string-append out "/man/man1")) + #t))) + (delete 'configure)))) + (synopsis "Programs Microchip's PIC microcontrollers") + (description "This program programs Microchip's PIC microcontrollers.") + (home-page "http://hyvatti.iki.fi/~jaakko/pic/picprog.html") + (license license:gpl3+))) diff --git a/gnu/packages/erlang.scm b/gnu/packages/erlang.scm index 770ed715bc..77f39ee630 100644 --- a/gnu/packages/erlang.scm +++ b/gnu/packages/erlang.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 Steve Sprang <scs@stevesprang.com> -;;; Copyright © 2016 Leo Famulari <leo@famulari.name> +;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017 Pjotr Prins <pjotr.guix@thebird.nl> ;;; ;;; This file is part of GNU Guix. @@ -23,6 +23,7 @@ #:use-module (guix build-system gnu) #:use-module (guix download) #:use-module (guix packages) + #:use-module (guix utils) #:use-module (gnu packages) #:use-module (gnu packages autotools) #:use-module (gnu packages fontutils) @@ -35,7 +36,7 @@ (define-public erlang (package (name "erlang") - (version "20.1") + (version "20.1.7") (source (origin (method url-fetch) ;; The tarball from http://erlang.org/download contains many @@ -46,7 +47,7 @@ (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0r4g8ag7nlpw06y4c39fgcyccykj2sbyhv5jgp4qmrjci2ydgns8")) + "00pmngdyh1h088anmx6fbk085i93ajgk92rz7qsyhfc0lx0sm0a9")) (patches (search-patches "erlang-man-path.patch")))) (build-system gnu-build-system) (native-inputs @@ -59,7 +60,7 @@ ,(origin (method url-fetch) (uri (string-append "http://erlang.org/download/otp_doc_man_" - version ".tar.gz")) + (version-major+minor version) ".tar.gz")) (sha256 (base32 "0ikvdpn4z7az6szg176l1r2yxhgs3msa3wgb3gmy45jkz0pzik05")))))) diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm index f6addc31cc..b0e67c2023 100644 --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@ -297,9 +297,13 @@ high quality, anti-aliased and subpixel rendered text on a display.") (sha256 (base32 "0nbvjpnmcznib1nlgg8xckrmsw3haa154byds2h90y2g0nsjh4w2")) (patches (search-patches - "t1lib-CVE-2010-2642.patch" + "t1lib-CVE-2010-2642.patch" ; 2011-0443, 2011-5244 "t1lib-CVE-2011-0764.patch" - "t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch")))) + "t1lib-CVE-2011-1552+.patch")))) ; 2011-1553, 2011-1554 + (properties `((lint-hidden-cve . ("CVE-2011-0433" + "CVE-2011-1553" + "CVE-2011-1554" + "CVE-2011-5244")))) (build-system gnu-build-system) (arguments ;; Making the documentation requires latex, but t1lib is also an input diff --git a/gnu/packages/fvwm.scm b/gnu/packages/fvwm.scm index 933820e5fa..5ff3d5e4f2 100644 --- a/gnu/packages/fvwm.scm +++ b/gnu/packages/fvwm.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2017 ng0 <ng0@infotropique.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -34,16 +35,15 @@ (define-public fvwm (package (name "fvwm") - (version "2.6.6") + (version "2.6.7") (source (origin (method url-fetch) (uri (string-append "https://github.com/fvwmorg/fvwm/releases/download/" - "version-" (string-join (string-split version #\.) "_") - "/" name "-" version ".tar.gz")) + version "/" name "-" version ".tar.gz")) (sha256 (base32 - "0b6w0vk6cpqaz0ws3vl4by0mycv33r42a0m806j2h8avy9ghipn5")))) + "0wzghjgy65pkn31rgl14fngizw7nbkzbxsfa670xmrndpmd4sr81")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl) diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm index 3c544f5546..ca76ff7d85 100644 --- a/gnu/packages/game-development.scm +++ b/gnu/packages/game-development.scm @@ -12,6 +12,7 @@ ;;; Copyright © 2017 Manolis Fragkiskos Ragkousis <manolis837@gmail.com> ;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com> ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -111,7 +112,7 @@ is used in some video games and movies.") (define-public deutex (package (name "deutex") - (version "5.0.0") + (version "5.1.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/Doom-Utils/" name @@ -119,7 +120,7 @@ is used in some video games and movies.") name "-" version ".tar.xz")) (sha256 (base32 - "1jvffcpq64hk3jysz4q6zi9hqkksy151ci9553h8q7wrrkbw0i9z")))) + "0hwkm0q2w16ddmiwh7x3jcfp58zjb40a5dh7c3sybwm9bar37pn1")))) (build-system gnu-build-system) (native-inputs `(("asciidoc" ,asciidoc))) (home-page "https://github.com/Doom-Utils/deutex") @@ -1014,7 +1015,7 @@ of use.") (define-public openmw (package (name "openmw") - (version "0.42.0") + (version "0.43.0") (source (origin (method url-fetch) @@ -1023,7 +1024,7 @@ of use.") name "-" version ".tar.gz")) (sha256 (base32 - "1pla8016lpbg8cgm9kia318a860f26dmiayc72p3zl35mqrc7g7w")))) + "11phjx7b3mv4n295xgq25lkcwq0mgr35i5k05hf1h77y6n6jbw64")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; No test target diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 398ab4e9b5..b8e306a941 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -355,6 +355,47 @@ played. Freedoom complements the Doom engine with free levels, artwork, sound effects and music to make a completely free game.") (license license:bsd-3))) +(define-public knights + (package + (name "knights") + (version "025") + (source (origin + (method url-fetch) + (uri (string-append "http://www.knightsgame.org.uk/files/knights_" + version "_src.tar.gz")) + (sha256 + (base32 + "18vp2ygvn0s0jz8rm585jqf6hjqkam1ximq81k0r9hpmfj7wb88f")))) + (build-system gnu-build-system) + (arguments + '(#:make-flags + (list (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + ;; No configure script. + (delete 'configure)) + #:tests? #f)) ;; No check target. + (inputs + `(("boost" ,boost) + ("sdl-union" ,(sdl-union (list sdl sdl-image sdl-mixer))) + ("freetype" ,freetype) + ("fontconfig" ,fontconfig) + ("curl" ,curl))) + (home-page "http://www.knightsgame.org.uk/") + (synopsis "Multiplayer dungeon game involving knights and quests") + (description "Knights is a multiplayer game involving several knights who +must run around a dungeon and complete various quests. Each game revolves +around a quest – for example, you might have to find some items and carry them +back to your starting point. This may sound easy, but as there are only +enough items in the dungeon for one player to win, you may end up having to +kill your opponents to get their stuff! Other quests involve escaping from +the dungeon, fighting a duel to the death against the enemy knights, or +destroying an ancient book using a special wand.") + ;; This package includes modified sources of lua (X11), enet (Expat), and + ;; guichan (BSD-3). The "Coercri" library is released under the Boost + ;; license. The whole package is released under GPLv3+. + (license license:gpl3+))) + (define-public gnubg (package (name "gnubg") @@ -2737,6 +2778,9 @@ Transport Tycoon Deluxe.") (build-system cmake-build-system) (arguments `(#:tests? #f ;; no tests available + #:configure-flags + (list (string-append "-DCMAKE_INSTALL_LIBDIR=" + (assoc-ref %outputs "out") "/lib")) #:phases (modify-phases %standard-phases (add-after 'unpack 'fix-usr-share-paths diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm index 1956f60e6e..62e272b5bf 100644 --- a/gnu/packages/gl.scm +++ b/gnu/packages/gl.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2016 David Thompson <davet@gnu.org> ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -41,6 +42,7 @@ #:use-module (gnu packages llvm) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages tls) #:use-module (gnu packages video) #:use-module (gnu packages xdisorg) #:use-module (gnu packages xml) @@ -724,3 +726,36 @@ mixed vector/bitmap output.") (license (list license:lgpl2.0+ (license:fsf-free "http://www.geuz.org/gl2ps/COPYING.GL2PS" "GPL-incompatible copyleft license"))))) + +(define-public virtualgl + (package + (name "virtualgl") + (version "2.5.2") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/VirtualGL/virtualgl/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0rnid3hwrry9d5d4m7sygq00xxx976rgk00a3557m9r5kxbmy476")))) + (arguments + `(#:tests? #f ;; no tests are available + #:configure-flags (list "-DVGL_USESSL=1" ;; use OpenSSL + (string-append "-DCMAKE_INSTALL_LIBDIR=" + (assoc-ref %outputs "out") "/lib")))) + (build-system cmake-build-system) + (inputs `(("glu" ,glu) + ("libjpeg-turbo" ,libjpeg-turbo) + ("mesa" ,mesa) + ("openssl" ,openssl))) + (native-inputs `(("pkg-config", pkg-config))) + (home-page "https://www.virtualgl.org") + (synopsis "Redirects 3D commands from an OpenGL application onto a 3D +graphics card") + (description "VirtualGL redirects the 3D rendering commands from OpenGL +applications to 3D accelerator hardware in a dedicated server and displays the +rendered output interactively to a thin client located elsewhere on the +network.") + (license license:wxwindows3.1+))) diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 6629a1261b..a89b61565f 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -4061,7 +4061,7 @@ work and the interface is well tested.") (define-public eolie (package (name "eolie") - (version "0.9.13") + (version "0.9.15") (source (origin (method url-fetch) (uri (string-append "https://github.com/gnumdk/eolie/" @@ -4069,7 +4069,7 @@ work and the interface is well tested.") "/eolie-" version ".tar.xz")) (sha256 (base32 - "1khpc6x40y5gm0a3p5fxiva9p1djijxmsh74xinigddnyqbjqw69")))) + "0glydxp1xh85gfidk1l9miqn6qxdbvvk5s3iy0pjlv8nrs3263jd")))) (build-system glib-or-gtk-build-system) (arguments `(#:phases @@ -6638,7 +6638,7 @@ basically a text box in which notes can be written.") (sha256 (base32 "0c1q9w5vql0vvg6g0knxfnv4ap19fg5cdrwndi1cj9lsym92c78j")))) - (build-system gnu-build-system) + (build-system glib-or-gtk-build-system) (native-inputs `(("desktop-file-utils" ,desktop-file-utils) ("glib:bin" ,glib "bin") ; for glib-compile-resources. diff --git a/gnu/packages/gnunet.scm b/gnu/packages/gnunet.scm index bf0274aa9c..2d238febce 100644 --- a/gnu/packages/gnunet.scm +++ b/gnu/packages/gnunet.scm @@ -144,14 +144,14 @@ tool to extract metadata from a file and print the results.") (define-public libmicrohttpd (package (name "libmicrohttpd") - (version "0.9.57") + (version "0.9.58") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/libmicrohttpd/libmicrohttpd-" version ".tar.gz")) (sha256 (base32 - "0kmgkk9sjg1n3q7rbzw5y4qmgh51zn5qi2j69gbqmr6phxjaghfy")))) + "1wq17qvizis7bsyvyw1gnfycvivssncngziddnyrbzv2dhvy24bs")))) (build-system gnu-build-system) (inputs `(("curl" ,curl) @@ -188,11 +188,10 @@ authentication and support for SSL3 and TLS.") (version "7.57.0") (source (origin (method url-fetch) - (uri (string-append "https://gnunet.org/sites/default/files/" - name "-" version ".tar.bz2")) + (uri (string-append "mirror://gnu/gnunet/" name "-" version ".tar.xz")) (sha256 (base32 - "1dykh12mc241jnxcd8q5pm1yw9ras53ywyba9f9dy5cq39j2mk9c")))) + "0cl2x1jddnhn1z8gd75w6k7lb6pymn5rf2vqgl2vdkbxsz677z07")))) (build-system gnu-build-system) (outputs '("out" "doc")) ; 1.5 MiB of man3 pages diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm index a8424a87f6..c8d494c401 100644 --- a/gnu/packages/gnupg.scm +++ b/gnu/packages/gnupg.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org> @@ -736,7 +736,10 @@ including tools for signing keys, keyring analysis, and party preparation. (description "Pinentry provides a console that allows users to enter a passphrase when @code{gpg} is run and needs it.") - (license license:gpl2+))) + (license license:gpl2+) + (properties '((ftp-server . "ftp.gnupg.org") + (ftp-directory . "/gcrypt/pinentry") + (upstream-name . "pinentry"))))) (define-public pinentry-gtk2 (package diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm index 34c1a777aa..15582fb471 100644 --- a/gnu/packages/gnuzilla.scm +++ b/gnu/packages/gnuzilla.scm @@ -481,7 +481,8 @@ security standards.") (mozilla-patch "icecat-bug-1047098-pt3.patch" "36bd15d14c5a" "0cb3l3hpsgk674f08kfamxhqfga3ah5v904gpxq9ag006vzd2cxz") (mozilla-patch "icecat-bug-1404105.patch" "2909ba991f31" "126vssj57dc800347f075wlnjzcwamnxxmgxl9w78jpb0hj9gf16") (search-patch "icecat-bug-1415133.patch") - (mozilla-patch "icecat-bug-1355576.patch" "cf34a0574e58" "1z7sa1d12hypgivm5xxn32s58afpjcij97jvnafcgnfvxywrgr1m"))) + (mozilla-patch "icecat-bug-1355576.patch" "cf34a0574e58" "1z7sa1d12hypgivm5xxn32s58afpjcij97jvnafcgnfvxywrgr1m") + (mozilla-patch "icecat-CVE-2017-7843.patch" "f6216ea8b8fc" "0jnhdkj0ch9mj01mzlvhjgf8zsxlbg6m7yvpq99qr7xmg0pzbgwl"))) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index b5bdfe83fc..70df77b5d2 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -27,6 +27,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages compression) + #:use-module (gnu packages cran) #:use-module (gnu packages graphviz) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) @@ -119,6 +120,31 @@ random and regular graphs, graph visualization, centrality methods and much more.") (license license:gpl2+))) +(define-public r-diffusionmap + (package + (name "r-diffusionmap") + (version "1.1-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "diffusionMap" version)) + (sha256 + (base32 + "1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3")))) + (properties `((upstream-name . "diffusionMap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph) + ("r-matrix" ,r-matrix) + ("r-scatterplot3d" ,r-scatterplot3d))) + (home-page "http://www.r-project.org") + (synopsis "Diffusion map") + (description "This package implements the diffusion map method of data +parametrization, including creation and visualization of diffusion maps, +clustering with diffusion K-means and regression using the adaptive regression +model.") + (license license:gpl2))) + (define-public r-rgraphviz (package (name "r-rgraphviz") diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index 3333ca87fd..5fad28952b 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -100,7 +100,7 @@ arrays of data.") (define-public gstreamer (package (name "gstreamer") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) @@ -109,7 +109,7 @@ arrays of data.") version ".tar.xz")) (sha256 (base32 - "0vi1g8rmmsnd630ds3jwv2iph46ll8y07fzf04mz15q88j9g926k")))) + "0x06jxmc5fhlz7cr1pl5lp0hm1jgz519jjic37d09srf9jm091ss")))) (build-system gnu-build-system) (outputs '("out" "doc")) (arguments @@ -148,7 +148,7 @@ This package provides the core library and elements.") (define-public gst-plugins-base (package (name "gst-plugins-base") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) @@ -156,7 +156,7 @@ This package provides the core library and elements.") name "-" version ".tar.xz")) (sha256 (base32 - "19ffwdch7m777ragmwpy6prqmfb742ym1n3ki40s0zyki627plyk")))) + "10i255q7i8an1hxz3szb36x1jcs9nfdy511pj2wg24h2vw1nnc2c")))) (build-system gnu-build-system) (outputs '("out" "doc")) (propagated-inputs @@ -203,7 +203,7 @@ for the GStreamer multimedia library.") (define-public gst-plugins-good (package (name "gst-plugins-good") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) @@ -212,7 +212,7 @@ for the GStreamer multimedia library.") name "-" version ".tar.xz")) (sha256 (base32 - "00sznj1sl97fqpn6j8ngps04clvxp8h8yhw6lvszx4b855wz9rqk")))) + "0mxrbrqrfq1946gn9im19maj7ivld4k946vkwrzd94h8qsz4k7v4")))) (build-system gnu-build-system) (inputs `(("aalib" ,aalib) @@ -262,14 +262,14 @@ developers consider to have good quality code and correct functionality.") (define-public gst-plugins-bad (package (name "gst-plugins-bad") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) (uri (string-append "https://gstreamer.freedesktop.org/src/" name "/" name "-" version ".tar.xz")) (sha256 (base32 - "1v5z3i5ha20gmbb3r9dwsaaspv5fm1jfzlzwlzqx1gjj31v5kl1n")))) + "021d3q81m968lpnah517sfclagadcqwd6jz3lqdmqvb82sz5fy0c")))) (outputs '("out" "doc")) (build-system gnu-build-system) (arguments @@ -277,16 +277,7 @@ developers consider to have good quality code and correct functionality.") #:configure-flags (list (string-append "--with-html-dir=" (assoc-ref %outputs "doc") - "/share/gtk-doc/html")) - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-openjpeg-reference - (lambda _ - ;; Remove hard-coded openjpeg-2.2 path. 2.3 is API- and - ;; ABI-compatible. - (substitute* "ext/openjpeg/gstopenjpeg.h" - (("<openjpeg-2\\.2/") "<openjpeg-2.3/")) - #t))))) + "/share/gtk-doc/html")))) (propagated-inputs `(("gst-plugins-base" ,gst-plugins-base))) (native-inputs @@ -347,7 +338,7 @@ par compared to the rest.") (define-public gst-plugins-ugly (package (name "gst-plugins-ugly") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) @@ -355,7 +346,7 @@ par compared to the rest.") name "/" name "-" version ".tar.xz")) (sha256 (base32 - "0lh00rg26iy5lr5al23lxsyncjqkgzph1bzkrgp8x9sfr62ab378")))) + "08p5kggk1szvr76cdbx3q3yfc235w1przb76v2n51lwfi26mn5hw")))) (build-system gnu-build-system) (inputs `(("gst-plugins-base" ,gst-plugins-base) @@ -386,7 +377,7 @@ distribution problems in some jurisdictions, e.g. due to patent threats.") (define-public gst-libav (package (name "gst-libav") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) (uri (string-append @@ -394,7 +385,7 @@ distribution problems in some jurisdictions, e.g. due to patent threats.") name "-" version ".tar.xz")) (sha256 (base32 - "0l4nc6ikdx49l7bdrk3bd9p3pzry8a328r22zg48gyzpnv5ghph1")))) + "0qly3lgamm36xql9q7wg5751gi6j2d3ifzz1pkr15ncc5mfslmia")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("--with-system-libav") @@ -411,7 +402,7 @@ distribution problems in some jurisdictions, e.g. due to patent threats.") ("python" ,python))) (inputs `(("gst-plugins-base" ,gst-plugins-base) - ("ffmpeg" ,ffmpeg-3.3) + ("ffmpeg" ,ffmpeg) ("orc" ,orc) ("zlib" ,zlib))) (home-page "http://gstreamer.freedesktop.org/") @@ -424,7 +415,7 @@ compression formats through the use of the libav library.") (define-public python-gst (package (name "python-gst") - (version "1.12.3") + (version "1.12.4") (source (origin (method url-fetch) (uri (string-append @@ -432,7 +423,7 @@ compression formats through the use of the libav library.") "gst-python-" version ".tar.xz")) (sha256 (base32 - "19rb06x2m7103zwfm0plxx95gb8bp01ng04h4q9k6ii9q7g2kxf3")))) + "1sm3dy10klf6i3w6a6mz0rnm29l2lxci5hr8346496jwc7v6mki0")))) (build-system gnu-build-system) (arguments ;; XXX: Factorize python-sitedir with python-build-system. diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm index 0e77caf08c..694d281f21 100644 --- a/gnu/packages/gtk.scm +++ b/gnu/packages/gtk.scm @@ -15,6 +15,7 @@ ;;; Copyright © 2016 Patrick Hetu <patrick.hetu@auf.org> ;;; Coypright © 2016 ng0 <ng0@we.make.ritual.n0.is> ;;; Coypright © 2017 Roel Janssen <roel@gnu.org> +;;; Coypright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -380,7 +381,7 @@ printing and other features typical of a source code editor.") (define-public gtksourceview (package (name "gtksourceview") - (version "3.24.4") + (version "3.24.6") (source (origin (method url-fetch) (uri (string-append "mirror://gnome/sources/" name "/" @@ -388,7 +389,7 @@ printing and other features typical of a source code editor.") name "-" version ".tar.xz")) (sha256 (base32 - "14x738xrz9q8qz13xd7dys748ryxyq2srbqyaa9r7n47h2av2zr0")))) + "1261fwjpwn3qizmvjns9z3k3a264j3ql5anyvmisfwywpkzbv9ks")))) (build-system gnu-build-system) (arguments '(#:phases diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm index 352e7bd892..bc6fcd74eb 100644 --- a/gnu/packages/guile.scm +++ b/gnu/packages/guile.scm @@ -15,6 +15,7 @@ ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 Theodoros Foradis <theodoros@foradis.org> ;;; Copyright © 2017 ng0 <ng0@infotropique.org> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1117,13 +1118,16 @@ inspired by the SCSH regular expression system.") (compile-file (lambda (in-file out-file) (system* guild "compile" "-o" out-file in-file)))) - ;; Make installation directories. - (mkdir-p module-dir) - (mkdir-p doc) - ;; Switch directory for compiling and installing (chdir source) + ;; Install the documentation. + (install-file "README.md" doc) + (copy-recursively "examples" (string-append doc "/examples")) + + ;; Make installation directories. + (mkdir-p module-dir) + ;; copy the source (copy-file "gdbm.scm" gdbm.scm-dest) @@ -1136,7 +1140,7 @@ inspired by the SCSH regular expression system.") ;; compile to the destination (compile-file gdbm.scm-dest gdbm.go-dest))))) (inputs - `(("guile" ,guile-2.0))) + `(("guile" ,guile-2.2))) (propagated-inputs `(("gdbm" ,gdbm))) (home-page "https://github.com/ijp/guile-gdbm") @@ -1146,8 +1150,11 @@ inspired by the SCSH regular expression system.") Guile's foreign function interface.") (license license:gpl3+))) +(define-public guile2.0-gdbm-ffi + (package-for-guile-2.0 guile-gdbm-ffi)) + (define-public guile2.2-gdbm-ffi - (package-for-guile-2.2 guile-gdbm-ffi)) + (deprecated-package "guile2.2-gdbm-ffi" guile-gdbm-ffi)) (define-public guile-sqlite3 (let ((commit "607721fe1174a299e45d457acacf94eefb964071")) diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm index 95bb3811ca..68172d8a91 100644 --- a/gnu/packages/haskell.scm +++ b/gnu/packages/haskell.scm @@ -1292,7 +1292,7 @@ unlit literate code files; and an option to turn off macro-expansion.") (define-public ghc-reflection (package (name "ghc-reflection") - (version "2.1") + (version "2.1.2") (source (origin (method url-fetch) @@ -1302,7 +1302,7 @@ unlit literate code files; and an option to turn off macro-expansion.") ".tar.gz")) (sha256 (base32 - "10w3m6v3g6am203wbrikdbp57x9vw6b4jsh7bxdzsss4nmpm81zg")))) + "0f9w0akbm6p8h7kzgcd2f6nnpw1wy84pqn45vfz1ch5j0hn8h2d9")))) (build-system haskell-build-system) (inputs `(("ghc-tagged" ,ghc-tagged))) (home-page "https://github.com/ekmett/reflection") diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 4ea51710e7..93668519a5 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -1112,14 +1112,14 @@ PNG, and performs PNG integrity checks and corrections.") (define-public libjpeg-turbo (package (name "libjpeg-turbo") - (version "1.5.2") + (version "1.5.3") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/" name "/" version "/" name "-" version ".tar.gz")) (sha256 (base32 - "0a5m0psfp5952y5vrcs0nbdz1y9wqzg2ms0xwrx752034wxr964h")))) + "08r5b5mywwrxv4axvq80dm31cklz81grczlzlxr2xqa6pgi90j5j")))) (build-system gnu-build-system) (native-inputs `(("nasm" ,nasm))) diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm index 42f4a7c92e..ac9fca8600 100644 --- a/gnu/packages/imagemagick.scm +++ b/gnu/packages/imagemagick.scm @@ -164,7 +164,7 @@ script.") (define-public graphicsmagick (package (name "graphicsmagick") - (version "1.3.26") + (version "1.3.27") (source (origin (method url-fetch) (uri @@ -176,17 +176,7 @@ script.") "/GraphicsMagick-" version ".tar.xz"))) (sha256 (base32 - "122zgs96dqrys62mnh8x5yvfff6km4d3yrnvaxzg3mg5sprib87v")) - (patches - (search-patches "graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch" - "graphicsmagick-CVE-2017-12935.patch" - "graphicsmagick-CVE-2017-12936.patch" - "graphicsmagick-CVE-2017-12937.patch" - "graphicsmagick-CVE-2017-13775.patch" - "graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch" - "graphicsmagick-CVE-2017-14042.patch" - "graphicsmagick-CVE-2017-14165.patch" - "graphicsmagick-CVE-2017-14649.patch")))) + "0rq35p3rml10cxz2z4s7xcfsilhhk19mmy094g3ivz0fg797hcnh")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/jemalloc.scm b/gnu/packages/jemalloc.scm index a3bd2c93a4..5086df7a1b 100644 --- a/gnu/packages/jemalloc.scm +++ b/gnu/packages/jemalloc.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -23,6 +24,8 @@ #:use-module ((guix licenses) #:select (bsd-2)) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix utils) + #:use-module (gnu packages) #:use-module (gnu packages perl) #:use-module (guix build-system gnu)) @@ -37,7 +40,8 @@ version "/jemalloc-" version ".tar.bz2")) (sha256 (base32 - "1sf3lzgb0y8nnyzmp4zrca3sngdxw3kfh20sna9z03jv74fph528")))) + "1sf3lzgb0y8nnyzmp4zrca3sngdxw3kfh20sna9z03jv74fph528")) + (patches (search-patches "jemalloc-arm-address-bits.patch")))) (build-system gnu-build-system) (arguments `(#:phases @@ -62,3 +66,17 @@ "This library providing a malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.") (license bsd-2))) + +(define-public jemalloc-4.5.0 + (package + (inherit jemalloc) + (version "4.5.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/jemalloc/jemalloc/releases/download/" + version "/jemalloc-" version ".tar.bz2")) + (sha256 + (base32 + "10373xhpc10pgmai9fkc1z0rs029qlcb3c0qfnvkbwdlcibdh2cl")))) + (inputs '()))) diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm index 59271ebee5..89ad30ecd2 100644 --- a/gnu/packages/kde.scm +++ b/gnu/packages/kde.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> +;;; Copyright © 2017 Mark Meyer <mark@ofosos.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -23,18 +24,29 @@ #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix utils) + #:use-module (gnu packages algebra) #:use-module (gnu packages apr) #:use-module (gnu packages boost) #:use-module (gnu packages compression) + #:use-module (gnu packages curl) #:use-module (gnu packages documentation) + #:use-module (gnu packages gettext) + #:use-module (gnu packages ghostscript) #:use-module (gnu packages gl) #:use-module (gnu packages gnome) + #:use-module (gnu packages graphics) + #:use-module (gnu packages image) #:use-module (gnu packages kde-frameworks) #:use-module (gnu packages llvm) + #:use-module (gnu packages maths) + #:use-module (gnu packages pdf) + #:use-module (gnu packages perl) + #:use-module (gnu packages photo) #:use-module (gnu packages pkg-config) #:use-module (gnu packages tls) #:use-module (gnu packages qt) - #:use-module (gnu packages version-control)) + #:use-module (gnu packages version-control) + #:use-module (gnu packages xorg)) (define-public kdevelop (package @@ -220,6 +232,86 @@ for some KDevelop language plugins (Ruby, PHP, CSS...).") plugins, as well as code to create plugins, or complete applications.") (license license:gpl3+))) +(define-public krita + (package + (name "krita") + (version "3.3.2.1") + (source (origin + (method url-fetch) + (uri (string-append + "mirror://kde/stable/krita/" + "3.3.2/" name "-" version ".tar.xz")) + (sha256 + (base32 + "0i3l27cfi1h486m74xf4ynk0pwx32xaqraa91a0g1bpj1jxf2mg5")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f + #:configure-flags + (list "-DBUILD_TESTING=OFF" "-DKDE4_BUILD_TESTS=OFF" + (string-append "-DWITH_FFTW3=" + (assoc-ref %build-inputs "fftw")) + (string-append "-DWITH_GSL=" + (assoc-ref %build-inputs "gsl")) + (string-append "-DWITH_LibRaw=" + (assoc-ref %build-inputs "libraw")) + (string-append "-DWITH_TIFF=" + (assoc-ref %build-inputs "libtiff")) + (string-append "-DCMAKE_CXX_FLAGS=-I" + (assoc-ref %build-inputs "ilmbase") + "/include/OpenEXR")))) + (native-inputs + `(("curl" ,curl) + ("eigen" ,eigen) + ("extra-cmake-modules" ,extra-cmake-modules) + ("gettext-minimal" ,gettext-minimal) + ("kitemmodels" ,kitemmodels) + ("qwt" ,qwt) + ("vc" ,vc))) + (inputs + `(("qtbase" ,qtbase) + ("qtdeclarative" ,qtdeclarative) + ("qtmultimedia" ,qtmultimedia) + ("qtx11extras" ,qtx11extras) + ("qtsvg" ,qtsvg) + ("karchive" ,karchive) + ("kcompletion" ,kcompletion) + ("kconfig" ,kconfig) + ("kcoreaddons" ,kcoreaddons) + ("kcrash" ,kcrash) + ("kguiaddons" ,kguiaddons) + ("ki18n" ,ki18n) + ("kiconthemes" ,kiconthemes) + ("kio" ,kio) + ("kitemviews" ,kitemviews) + ("kwidgetsaddons" ,kwidgetsaddons) + ("kwindowsystem" ,kwindowsystem) + ("kxmlgui" ,kxmlgui) + ("boost" ,boost) + ("exiv2" ,exiv2) + ("lcms" ,lcms) + ("libpng" ,libpng) + ("libjpeg-turbo" ,libjpeg-turbo) + ("zlib" ,zlib) + ("libx11" ,libx11) + ("libxcb" ,libxcb) + ("libxi" ,libxi) + ("fftw" ,fftw) + ("gsl" ,gsl) + ("poppler-qt5" ,poppler-qt5) + ("libraw" ,libraw) + ("libtiff" ,libtiff) + ("perl" ,perl) + ("ilmbase" ,ilmbase) + ("openexr" ,openexr))) + (home-page "https://krita.org") + (synopsis "Digital painting application") + (description + "Krita is a professional painting tool designed for concept artists, +illustrators, matte and texture artists, and the VFX industry. Notable +features include brush stabilizers, brush engines and wrap-around mode.") + (license license:gpl2+))) + (define-public libkomparediff2 (package (name "libkomparediff2") diff --git a/gnu/packages/language.scm b/gnu/packages/language.scm index 57d625057c..06190ba6ac 100644 --- a/gnu/packages/language.scm +++ b/gnu/packages/language.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015, 2016 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -51,7 +52,7 @@ manipulating such numbers.") (define-public perl-lingua-en-inflect (package (name "perl-lingua-en-inflect") - (version "1.901") + (version "1.903") (source (origin (method url-fetch) @@ -59,7 +60,7 @@ manipulating such numbers.") "Lingua-EN-Inflect-" version ".tar.gz")) (sha256 (base32 - "0mcwlgf6hkh4zm3s1x899f25xj4hyzrc2vssiwfxysqja36yf5ys")))) + "0j8d1f1wvmgc11d71pc8xp8fv5a1nb2yfw1dgd19xhscn1klpvzw")))) (build-system perl-build-system) (native-inputs `(("perl-module-build" ,perl-module-build))) (home-page "http://search.cpan.org/dist/Lingua-EN-Inflect") @@ -284,15 +285,15 @@ parameters, returning the stemmed Italian word.") (define-public perl-lingua-stem-ru (package (name "perl-lingua-stem-ru") - (version "0.01") + (version "0.04") (source (origin (method url-fetch) - (uri (string-append "mirror://cpan/authors/id/A/AL/ALGDR/" + (uri (string-append "mirror://cpan/authors/id/N/NE/NEILB/" "Lingua-Stem-Ru-" version ".tar.gz")) (sha256 (base32 - "0pqgg442fkf12ayh9fgmpa8q9x0iqx6s96181r52yn7s7pcs61h6")))) + "0a2jmdz7jn32qj5hyiw5kbv8fvlpmws8i00a6xcbkzb48yvwww0j")))) (build-system perl-build-system) (home-page "http://search.cpan.org/dist/Lingua-Stem-Ru") (synopsis "Porter's stemming algorithm for Russian") diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 381fff707d..32851fc4ea 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -78,6 +78,7 @@ #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) + #:use-module (gnu packages netpbm) #:use-module (gnu packages networking) #:use-module (gnu packages ninja) #:use-module (gnu packages perl) @@ -369,8 +370,8 @@ It has been modified to remove all non-free binary blobs.") (define %intel-compatible-systems '("x86_64-linux" "i686-linux")) (define %linux-compatible-systems '("x86_64-linux" "i686-linux" "armhf-linux")) -(define %linux-libre-version "4.14.4") -(define %linux-libre-hash "1hl4n1jpqd05b7qnxbwjmbl2l5cgrh2spqsjq1fnihphmawjd3li") +(define %linux-libre-version "4.14.6") +(define %linux-libre-hash "0q6dl2shkj5dkf0wgzgfyaq0axk97w05j618xi619y9xqph4ql79") ;; linux-libre configuration for armhf-linux is derived from Debian armmp. It ;; supports qemu "virt" machine and possibly a large number of ARM boards. @@ -383,20 +384,20 @@ It has been modified to remove all non-free binary blobs.") #:configuration-file kernel-config)) (define-public linux-libre-4.9 - (make-linux-libre "4.9.67" - "1fr8h4g3j4ns0x33i36kgsgb175cdz9v530gx8sxcrbkd10i9i07" + (make-linux-libre "4.9.69" + "0xkqbh8fpx47appszjbxzljr6vr0wyk0fphlkynpcrmingk4b98j" %intel-compatible-systems #:configuration-file kernel-config)) (define-public linux-libre-4.4 - (make-linux-libre "4.4.104" - "1971hphyqbzh80frkbidbqwhgk21r5p2a42bihjcd5kh3pssn4zl" + (make-linux-libre "4.4.105" + "177qvci7wfrc23vi11bnyayfivxf6d8hankgrzv26jr3z6j0rall" %intel-compatible-systems #:configuration-file kernel-config)) (define-public linux-libre-4.1 - (make-linux-libre "4.1.46" - "0bg1vplfksgsnxqdxdp2n0b5lv2j299nv52s8hpja5ckp396jkhk" + (make-linux-libre "4.1.48" + "13ii6ixcm46hzk1ns6n4hrrv4dyc0n3wvj2qhmxi178akdcgbn8a" %intel-compatible-systems #:configuration-file kernel-config)) @@ -4333,10 +4334,11 @@ libraries, which are often integrated directly into libfabric.") (package (name "psm") (version "3.3.20170428") + (home-page "https://github.com/intel/psm") (source (origin (method git-fetch) - (uri (git-reference (url "http://github.com/01org/psm") + (uri (git-reference (url home-page) (commit "604758e76dc31e68d1de736ccf5ddf16cb22355b"))) (file-name (string-append "psm-" version ".tar.gz")) (sha256 @@ -4362,7 +4364,6 @@ libraries, which are often integrated directly into libfabric.") (substitute* "Makefile" (("/lib64") "/lib")) #t))))) - (home-page "https://github.com/01org/psm") (synopsis "Intel Performance Scaled Messaging (PSM) Libraries") (description "The PSM Messaging API, or PSM API, is Intel's low-level user-level @@ -4372,3 +4373,119 @@ interfaces in parallel environments.") ;; Only Intel-compatable processors are supported. (supported-systems '("i686-linux" "x86_64-linux")) (license (list license:bsd-2 license:gpl2)))) ;dual + +(define-public snapscreenshot + (package + (name "snapscreenshot") + (version "1.0.14.3") + (source + (origin + (method url-fetch) + (uri (string-append "http://bisqwit.iki.fi/src/arch/" + name "-" version ".tar.bz2")) + (sha256 + (base32 "0gzvqsbf6a2sbd1mqvj1lbm57i2bm5k0cr6ncr821d1f32gw03mk")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags + (let ((out (assoc-ref %outputs "out"))) + (list (string-append "BINDIR=" out "/bin") + (string-append "MANDIR=" out "/share/man"))) + #:tests? #f ; no test suite + #:phases + (modify-phases %standard-phases + (delete 'configure) ; ./configure is a snarky no-op + (add-before 'install 'fix-ownership + ;; Install binaries owned by ‘root’ instead of the nonexistent ‘bin’. + (lambda _ + (substitute* "depfun.mak" + ((" -o bin -g bin ") " ")) + #t)) + (add-before 'install 'create-output-directories + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (mkdir-p (string-append out "/share/man/man1")) + #t)))))) + (home-page "http://bisqwit.iki.fi/source/snapscreenshot.html") + (synopsis "Take screenshots of one or more Linux text consoles") + (description + "snapscreenshot saves a screenshot of one or more Linux text consoles as a +Targa (@dfn{.tga}) image. It can be used by anyone with read access to the +relevant @file{/dev/vcs*} file(s).") + (license license:gpl2))) + +(define-public fbcat + (package + (name "fbcat") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/jwilk/fbcat/releases/download/" + version "/" name "-" version ".tar.gz")) + (sha256 + (base32 "1dla1na3nf3s4xy0p6w0v54zipg1x8c14yqsw8w9qjzhchr4caxw")))) + (build-system gnu-build-system) + (native-inputs + ;; For building the man pages. + `(("docbook-xml" ,docbook-xml) + ("docbook-xsl" ,docbook-xsl) + ("xsltproc" ,libxslt))) + (inputs + ;; The ‘fbgrab’ wrapper can use one of several PPM-to-PNG converters. We + ;; choose netpbm simply because it's the smallest. It still adds ~94 MiB + ;; to an otherwise tiny package, so we put ‘fbgrab’ in its own output. + `(("pnmtopng" ,netpbm))) + (outputs (list "out" "fbgrab")) + (arguments + `(#:make-flags (list "CC=gcc") + #:tests? #f ; no tests + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-docbook-location + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "doc/Makefile" + (("http://docbook.sourceforge.net/release/xsl/current") + (string-append (assoc-ref inputs "docbook-xsl") + "/xml/xsl/docbook-xsl-" + ,(package-version docbook-xsl)))) + #t)) + (delete 'configure) ; no configure script + (add-after 'build 'build-documentation + (lambda* (#:key make-flags #:allow-other-keys) + (zero? (apply system* "make" "-C" "doc" + make-flags)))) + (add-after 'build 'qualify-references + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((pnmtopng (assoc-ref inputs "pnmtopng")) + (out (assoc-ref outputs "out"))) + (substitute* "fbgrab" + (("fbcat" all) + (string-append out "/bin/" all)) + (("pnmtopng" all) + (string-append pnmtopng "/bin/" all))) + #t))) + (replace 'install + ;; The Makefile lacks an ‘install’ target. Install files manually. + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (out:fbgrab (assoc-ref outputs "fbgrab"))) + (install-file "fbcat" (string-append out "/bin")) + (install-file "doc/fbcat.1" + (string-append out "/share/man/man1")) + (install-file "fbgrab" (string-append out:fbgrab "/bin")) + (install-file "doc/fbgrab.1" + (string-append out:fbgrab "/share/man/man1")) + #t)))))) + (home-page "https://jwilk.net/software/fbcat") + (synopsis "Take a screenshot of the contents of the Linux framebuffer") + (description + "fbcat saves the contents of the Linux framebuffer (@file{/dev/fb*}), or +a dump therof. It supports a wide range of drivers and pixel formats. +@command{fbcat} can take screenshots of virtually any application that can be +made to write its output to the framebuffer, including (but not limited to) +text-mode or graphical applications that don't use a display server. + +Also included is @command{fbgrab}, a wrapper around @command{fbcat} that +emulates the behaviour of Gunnar Monell's older fbgrab utility.") + (license license:gpl2))) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index cf400a0eed..c8bd5d7747 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -621,7 +621,9 @@ computing environments.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "18n8775kyfwbvcjjjzda9c5sqy4737c0hrmj6qj1ps2jmlqzair9")))) + "18n8775kyfwbvcjjjzda9c5sqy4737c0hrmj6qj1ps2jmlqzair9")) + (patches (search-patches + "python-scikit-learn-fix-test-non-determinism.patch")))) (build-system python-build-system) (arguments `(#:phases diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 114b1a21bb..0423dd7c56 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -15,7 +15,7 @@ ;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org> ;;; Copyright © 2016 Alex Kost <alezost@gmail.com> ;;; Copyright © 2016, 2017 Troy Sankey <sankeytms@gmail.com> -;;; Copyright © 2016, 2017 ng0 <ng0@infotropique.org> +;;; Copyright © 2016, 2017 ng0 <ng0@n0.is> ;;; Copyright © 2016 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2016, 2017 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2016 John Darrington <jmd@gnu.org> @@ -240,14 +240,14 @@ aliasing facilities to work just as they would on normal mail.") (define-public mutt (package (name "mutt") - (version "1.9.1") + (version "1.9.2") (source (origin (method url-fetch) (uri (string-append "https://bitbucket.org/mutt/mutt/downloads/" "mutt-" version ".tar.gz")) (sha256 (base32 - "1c8vv4anl555a03pbnwf8wnf0d8pcnd4p35y3q8f5ikkcflq76vl")) + "15kqxpx8bykqbyw4q33hkz0j2f65v6cl21sl5li2vw5vaaim5qd2")) (patches (search-patches "mutt-store-references.patch")))) (build-system gnu-build-system) (inputs @@ -279,7 +279,7 @@ operating systems.") (define-public neomutt (package (name "neomutt") - (version "20171027") + (version "20171208") (source (origin (method url-fetch) @@ -287,7 +287,7 @@ operating systems.") "/archive/" name "-" version ".tar.gz")) (sha256 (base32 - "10z523cy3s6syh0mwpsncl87wrvyzsk99y7nzicwvx6y3hmdw01d")))) + "0dfp7m794ws6vg029zx7wrrjrscrnmi8cvbzqzgxafl97bbjipwz")))) (build-system gnu-build-system) (inputs `(("cyrus-sasl" ,cyrus-sasl) @@ -693,17 +693,23 @@ invoking @command{notifymuch} from the post-new hook.") (define-public notmuch (package (name "notmuch") - (version "0.25.2") + (version "0.25.3") (source (origin (method url-fetch) (uri (string-append "https://notmuchmail.org/releases/notmuch-" version ".tar.gz")) (sha256 (base32 - "0ai6vbs9wzwfz7jcphgqsqpcbq137l34xhmcli4h5c8n82fvmdp4")))) + "1fyx20rjpwbf2j1v5fpa5s0rjnwhcgvijzh2qyinp8rlbh1qxmab")))) (build-system gnu-build-system) (arguments - '(#:make-flags (list "V=1") ; Verbose test output. + `(#:modules ((guix build gnu-build-system) + ((guix build emacs-build-system) #:prefix emacs:) + (guix build utils)) + #:imported-modules (,@%gnu-build-system-modules + (guix build emacs-build-system) + (guix build emacs-utils)) + #:make-flags (list "V=1") ; Verbose test output. #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-notmuch-lib.el (lambda _ @@ -715,16 +721,25 @@ invoking @command{notifymuch} from the post-new hook.") (setenv "CC" "gcc") (setenv "CONFIG_SHELL" (which "sh")) - (let ((out (assoc-ref outputs "out"))) - (zero? (system* "./configure" - (string-append "--prefix=" out)))))) + (let* ((out (assoc-ref outputs "out")) + (elisp + (string-append out "/share/emacs/site-lisp/guix.d/" + ,name "-" ,version))) + (zero? + (system* + "./configure" + (string-append "--prefix=" out) + (string-append "--emacslispdir=" elisp) + (string-append "--emacsetcdir=" elisp)))))) (add-before 'check 'prepare-test-environment (lambda _ (setenv "TEST_CC" "gcc") ;; Patch various inline shell invocations. (substitute* (find-files "test" "\\.sh$") (("/bin/sh") (which "sh"))) - #t))))) + #t)) + (add-after 'install 'make-autoloads + (assoc-ref emacs:%standard-phases 'make-autoloads))))) (native-inputs `(("bash-completion" ,bash-completion) ("emacs" ,emacs-no-x) ; Minimal lacks libxml, needed for some tests. @@ -928,7 +943,7 @@ compresses it.") (define-public claws-mail (package (name "claws-mail") - (version "3.15.1") + (version "3.16.0") (source (origin (method url-fetch) (uri (string-append @@ -936,7 +951,7 @@ compresses it.") ".tar.xz")) (sha256 (base32 - "0hlm2jipyr4z6izlrpvabpz4ivh49i13avnm848kr1nv68pkq2cd")))) + "1awpr3s7n8bq8p3w10a4j6lg5bizjxyiqp4rqzc2j8cn7lyi64n2")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("bogofilter" ,bogofilter) @@ -2181,7 +2196,7 @@ to access GNU Mailman.") (define-public blists (package (name "blists") - (version "1.0") + (version "2.0") (source (origin (method url-fetch) @@ -2189,7 +2204,7 @@ to access GNU Mailman.") "blists/blists-" version ".tar.gz")) (sha256 (base32 - "1gp51kmb8yv8d693wcpdslmwlbw5w2kgz4kxhrcaf7y89w8wy4qd")))) + "1xll5wn7py3bbncbwrj172f56nz75c9gwfsa80rwd96ss9gfmp3c")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; No tests @@ -2381,3 +2396,28 @@ the GNOME desktop. It supports both POP3 and IMAP servers as well as the mbox, maildir and mh local mailbox formats. Balsa also supports SMTP and/or the use of a local MTA such as Sendmail.") (license gpl3+))) + +(define-public afew + (package + (name "afew") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "afew" version)) + (sha256 + (base32 + "121w7bd53xyibllxxbfykjj76n81kn1vgjqd22izyh67y8qyyk5r")))) + (build-system python-build-system) + (inputs + `(("python-chardet" ,python-chardet) + ("python-notmuch" ,python-notmuch))) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + (home-page "https://github.com/afewmail/afew") + (synopsis "Initial tagging script for notmuch mail") + (description "afew is an initial tagging script for notmuch mail. It +provides automatic tagging each time new mail is registered with notmuch. It +can add tags based on email headers or Maildir folders and can handle spam and +killed threads.") + (license isc))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index f6ea4ffc91..9e36b70cab 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -335,7 +335,7 @@ the OCaml language.") (define-public glpk (package (name "glpk") - (version "4.63") + (version "4.64") (source (origin (method url-fetch) @@ -343,7 +343,7 @@ the OCaml language.") version ".tar.gz")) (sha256 (base32 - "1xp7nclmp8inp20968bvvfcwmz3mz03sbm0v3yjz8aqwlpqjfkci")))) + "096cqgjc7vkq6wd8znhcxjbs1s2rym3qf753fqxrrq531vs6g4jk")))) (build-system gnu-build-system) (inputs `(("gmp" ,gmp))) @@ -1230,7 +1230,7 @@ interfaces.") (define-public ceres (package (name "ceres-solver") - (version "1.11.0") + (version "1.13.0") (home-page "http://ceres-solver.org/") (source (origin (method url-fetch) @@ -1238,7 +1238,7 @@ interfaces.") version ".tar.gz")) (sha256 (base32 - "0i7qkbf8g6pd8arxzldppga26ckv93y8zldsfz6wbd4n6b1nqrjd")))) + "1kbxgab3q1vgyq7hjqasr1lji4b2sgn7ss351amklkb3jyhr1x0x")))) (build-system cmake-build-system) (arguments ;; TODO: Build HTML user documentation and install separately. diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index 9525c9f5d1..1780536d05 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -387,7 +387,7 @@ authentication.") (list (search-path-specification (variable "PURPLE_PLUGIN_PATH") (files (list (string-append "lib/purple-" - (version-prefix version 1)) + (version-major version)) "lib/pidgin"))))) (home-page "http://www.pidgin.im/") (synopsis "Graphical multi-protocol instant messaging client") diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm index c37fa56df4..74b53afce1 100644 --- a/gnu/packages/mpd.scm +++ b/gnu/packages/mpd.scm @@ -76,7 +76,7 @@ interfacing MPD in the C, C++ & Objective C languages.") (define-public mpd (package (name "mpd") - (version "0.20.11") + (version "0.20.12") (source (origin (method url-fetch) (uri @@ -85,7 +85,7 @@ interfacing MPD in the C, C++ & Objective C languages.") "/mpd-" version ".tar.xz")) (sha256 (base32 - "1g0lwm8p98q2hxa9vd6jx61s7d3r665s2bmz6ipkv9ijmyfps8p9")))) + "02gpfkki61c24hphaas9pb29wpvd0pbmwdqrpn8wi1gv103aqng1")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 1aabe814be..a1014978be 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -40,6 +40,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system python) #:use-module (guix build-system scons) + #:use-module (guix build-system glib-or-gtk) #:use-module (guix build-system waf) #:use-module (gnu packages) #:use-module (gnu packages algebra) @@ -469,6 +470,75 @@ background while you work.") enable professional yet simple and intuitive pattern-based drum programming.") (license license:gpl2+))) +(define-public easytag + (package + (name "easytag") + (version "2.4.3") + (source (origin + (method url-fetch) + (uri (string-append "mirror://gnome/sources/easytag/2.4/easytag-" + version ".tar.xz")) + (sha256 + (base32 + "1mbxnqrw1fwcgraa1bgik25vdzvf97vma5pzknbwbqq5ly9fwlgw")))) + (build-system glib-or-gtk-build-system) + (native-inputs + `(("desktop-file-utils" ,desktop-file-utils) + ("glib" ,glib "bin") + ("intltool" ,intltool) + ("itstool" ,itstool) + ("pkg-config" ,pkg-config) + ("xmllint" ,libxml2))) + (inputs + `(("flac" ,flac) + ("gtk+" ,gtk+) + ("id3lib" ,id3lib) + ("libid3tag" ,libid3tag) + ("libvorbis" ,libvorbis) + ("opusfile" ,opusfile) + ("speex" ,speex) + ("taglib" ,taglib) + ("wavpack" ,wavpack) + ("yelp" ,yelp))) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'configure 'configure-libid3tag + (lambda* (#:key inputs #:allow-other-keys) + ;; libid3tag does not provide a .pc file and EasyTAG's configure + ;; script healivy relies on pkg-config. Providing a temporary + ;; local .pc file is easier than patching the configure script. + (let* ((libid3tag (assoc-ref inputs "libid3tag"))) + (mkdir-p "pkgconfig") + (with-output-to-file + "pkgconfig/id3tag.pc" + (lambda _ + (format #t + "prefix=~@*~a~@ + libdir=${prefix}/lib~@ + includedir=${prefix}/include~@ + Libs: -L${libdir} -lid3tag -lz~@ + Cflags: -I${includedir}~%" + libid3tag))) + (setenv "PKG_CONFIG_PATH" + (string-append (getenv "PKG_CONFIG_PATH") + ":" (getcwd) "/pkgconfig"))))) + (add-after 'unpack 'patch-makefile + (lambda _ + (substitute* "Makefile.in" + ;; The Makefile generates a test-desktop-file-validate.sh + ;; script with /bin/sh hard-coded. + (("/bin/sh") (which "sh")) + ;; Don't create 'icon-theme.cache'. + (("gtk-update-icon-cache") "true"))))))) + (home-page "https://wiki.gnome.org/Apps/EasyTAG") + (synopsis "Simple application for viewing and editing tags in audio files") + (description + "EasyTAG is an application for viewing and editing tags in audio files. +It supports MP3, MP2, MP4/AAC, FLAC, Ogg Opus, Ogg Speex, Ogg Vorbis, +MusePack, Monkey's Audio, and WavPack files.") + (license license:gpl2+))) + (define-public extempore (package (name "extempore") @@ -1857,7 +1927,7 @@ capabilities, custom envelopes, effects, etc.") (define-public yoshimi (package (name "yoshimi") - (version "1.5.3") + (version "1.5.5") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/yoshimi/" @@ -1865,7 +1935,7 @@ capabilities, custom envelopes, effects, etc.") "/yoshimi-" version ".tar.bz2")) (sha256 (base32 - "0sns35pyw2f74xrv1fxiyf9g9415kvh2rrbdjd60hsiv584nlari")))) + "0h71x9742bswifwll7bma1fz648fd5xd0yfp7byvsczy6zhjz5pf")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; there are no tests @@ -1975,6 +2045,43 @@ on the library.") allows you to send JACK MIDI events (i.e. play) using your PC keyboard.") (license license:bsd-2))) +(define-public jack-capture + (package + (name "jack-capture") + (version "0.9.73") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kmatheussen/jack_capture.git") + (commit version))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0jcqky96q8xgya6wqv1p8pj9fkf2wh7ynl67ah7x5bn3basgfclf")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags + (list (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:tests? #f ; there are none + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("which" ,which))) + (inputs + `(("gtk+" ,gtk+-2) + ("jack" ,jack-1) + ("libogg" ,libogg) + ("liblo" ,liblo) + ("lame" ,lame) + ("libsndfile" ,libsndfile))) + (home-page "https://github.com/kmatheussen/jack_capture") + (synopsis "Program for recording sound files with JACK") + (description "This is a program for recording sound files with JACK. It +can connect to any JACK port and record the output into a stereo WAV file.") + (license license:gpl2+))) + (define-public cursynth (package (name "cursynth") @@ -2001,6 +2108,34 @@ synthesis engine. Notes and parameter changes may be entered via MIDI or the computer's keyboard.") (license license:gpl3+))) +(define-public aj-snapshot + (package + (name "aj-snapshot") + (version "0.9.7") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/aj-snapshot/" + "aj-snapshot-" version ".tar.bz2")) + (sha256 + (base32 + "0yxccgp9qw2cyqv719wlbq8wfsr5ga8czvwa7bmb8dh5s11n3rn8")))) + (build-system gnu-build-system) + (inputs + `(("minixml" ,minixml) + ("jack" ,jack-1) + ("alsa-lib" ,alsa-lib))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://aj-snapshot.sourceforge.net/") + (synopsis "Snapshot connections between ALSA and JACK clients") + (description "Aj-snapshot is a small program that can be used to make +snapshots of the connections made between JACK and/or ALSA clients. Because +JACK can provide both audio and MIDI support to programs, aj-snapshot can +store both types of connections for JACK. ALSA, on the other hand, only +provides routing facilities for MIDI clients. Aj-snapshot is meant to be used +from the command line.") + (license license:gpl3+))) + (define-public qtractor (package (name "qtractor") @@ -2607,13 +2742,14 @@ standard MIDI file with the csvmidi program.") (name "gx-guvnor-lv2") (version "0.1") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/brummer10/GxGuvnor.lv2/" - "archive/v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/brummer10/GxGuvnor.lv2.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0rnfvrvs8qmmldyfmx4llyly33zp68448gx40ywdwj42x0mam92p")))) + "1wa5070j40p7f0b3kr259pzm99xb6cf2badr2capayjvgayd6gnm")))) (build-system gnu-build-system) (arguments `(;; The check target is used only to output a warning. @@ -2625,7 +2761,8 @@ standard MIDI file with the csvmidi program.") (replace 'configure (lambda _ (substitute* "Makefile" - (("INSTALL_DIR = .*") "INSTALL_DIR=/lib/lv2\n")) + (("INSTALL_DIR = .*") "INSTALL_DIR=/lib/lv2\n") + (("install : all") "install :")) #t))))) (inputs `(("lv2" ,lv2))) @@ -2634,12 +2771,13 @@ standard MIDI file with the csvmidi program.") (description "This package provides the LV2 plugin \"GxGuvnor\", a simulation of an overdrive or distortion pedal for guitars.") ;; The LICENSE file says GPLv3 but the license headers in the files say - ;; GPLv2 or later. - (license license:gpl2+))) + ;; GPLv2 or later. The whole project is released under GPLv3 or later + ;; according to https://github.com/brummer10/GxGuvnor.lv2/issues/1 + (license license:gpl3+))) (define-public gx-vbass-preamp-lv2 - (let ((commit "0e599abab10c7669dd444e5d06f671c2fc1b9c6c") - (revision "1")) + (let ((commit "eb999b0ca0ef4da40a59e458a9ab6e7042b96c99") + (revision "2")) (package (inherit gx-guvnor-lv2) (name "gx-vbass-preamp-lv2") (version (string-append "0-" revision "." (string-take commit 9))) @@ -2650,18 +2788,13 @@ simulation of an overdrive or distortion pedal for guitars.") (commit commit))) (sha256 (base32 - "1dzksdfrva666gpi62fd2ni9rhf18sl917f1894qr0b17pbdh9k1")) + "0firap073ldw4nrykkd7jvyyj0jbl1nslxyzjj4kswazp99x7d9h")) (file-name (string-append name "-" version "-checkout")))) - (arguments - (substitute-keyword-arguments (package-arguments gx-guvnor-lv2) - ((#:phases phases) - `(modify-phases ,phases - (replace 'configure - (lambda _ - (substitute* "Makefile" - (("INSTALL_DIR = .*") "INSTALL_DIR=/lib/lv2\n") - (("install : all") "install :")) - #t)))))) + (inputs + `(("lv2" ,lv2) + ("gtk+" ,gtk+-2))) + (native-inputs + `(("pkg-config" ,pkg-config))) (home-page "https://github.com/brummer10/GxVBassPreAmp.lv2") (synopsis "Simulation of the Vox Venue Bass 100 Pre Amp Section") (description "This package provides the LV2 plugin \"GxVBassPreAmp\", a @@ -2671,7 +2804,7 @@ Section.")))) (define-public gx-overdriver-lv2 (let ((commit "ed71801987449414bf3adaa0dbfac68e8775f1ce") (revision "1")) - (package (inherit gx-vbass-preamp-lv2) + (package (inherit gx-guvnor-lv2) (name "gx-overdriver-lv2") (version (string-append "0-" revision "." (string-take commit 9))) (source (origin @@ -2691,7 +2824,7 @@ overdrive effect.")))) (define-public gx-tone-mender-lv2 (let ((commit "b6780b4a3e4782b3ed0e5882d6788f178aed138f") (revision "1")) - (package (inherit gx-vbass-preamp-lv2) + (package (inherit gx-guvnor-lv2) (name "gx-tone-mender-lv2") (version (string-append "0-" revision "." (string-take commit 9))) (source (origin @@ -2711,7 +2844,7 @@ clean boost effect with a 3-knob tonestack.")))) (define-public gx-push-pull-lv2 (let ((commit "7f76ae2068498643ac8671ee0930b13ee3fd8eb5") (revision "1")) - (package (inherit gx-vbass-preamp-lv2) + (package (inherit gx-guvnor-lv2) (name "gx-push-pull-lv2") (version (string-append "0-" revision "." (string-take commit 9))) (source (origin @@ -2733,14 +2866,14 @@ simulation of a push pull transistor fuzz effect with added high octave.")))) (name "gx-suppa-tone-bender-lv2") (version "0.1") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/brummer10/" - "GxSuppaToneBender.lv2/archive/v" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/brummer10/GxSuppaToneBender.lv2.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1j90fns87035sfr6bxs4cvqxbyy3pqjhihx1nis8xajn202nl1hx")) - (file-name (string-append name "-" version ".tar.gz")))) + "01x6bjmllkmvxfzc5xwdix7w021j26js71awv728cxsmkxgqw0zy")))) (home-page "https://github.com/brummer10/GxSuppaToneBender.lv2") (synopsis "Simulation of the Vox Suppa Tone Bender pedal") (description "This package provides the LV2 plugin @@ -2748,8 +2881,8 @@ simulation of a push pull transistor fuzz effect with added high octave.")))) pedal."))) (define-public gx-saturator-lv2 - (let ((commit "0b581ac85c515325b9f16e51937cae6e1bf81a0a") - (revision "2")) + (let ((commit "605330f432c94b6eb3f8203cbe472befae959532") + (revision "3")) (package (inherit gx-vbass-preamp-lv2) (name "gx-saturator-lv2") (version (string-append "0-" revision "." (string-take commit 9))) @@ -2760,7 +2893,7 @@ pedal."))) (commit commit))) (sha256 (base32 - "1cl785pzq8zk55m1rnhfd6qsabci6kpf4pf002gwr91vagyq246z")) + "1w4nvh0rmxrv3s3hmh4fs74f3hc0jn31v00j769j7v68mqr7kawy")) (file-name (string-append name "-" version "-checkout")))) (home-page "https://github.com/brummer10/GxSaturator.lv2") (synopsis "Saturation effect") @@ -2772,14 +2905,14 @@ saturation effect.")))) (name "gx-hyperion-lv2") (version "0.1") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/brummer10/" - "GxHyperion.lv2/archive/v" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/brummer10/GxHyperion.lv2.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1pd7l33a14kq73wavgqq7csw4n3mwjz9d5rxaj0jgsyxd3llp3wh")) - (file-name (string-append name "-" version ".tar.gz")))) + "1vx79s6s9if117y2g0ppdja2sv2wcny6xcfl3j1z4cipahnildxf")))) (home-page "https://github.com/brummer10/GxHyperion.lv2") (synopsis "Simulation of the Hyperion Fuzz pedal") (description "This package provides the LV2 plugin \"GxHyperion\", a @@ -2790,14 +2923,14 @@ simulation of the Hyperion Fuzz pedal."))) (name "gx-voodoo-fuzz-lv2") (version "0.1") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/brummer10/" - "GxVoodoFuzz.lv2/archive/v" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/brummer10/GxVoodoFuzz.lv2.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0cc8sg7q493bs6pcq4ipqp6czpxv04nh9yvn8kq2x65ni2208n2f")) - (file-name (string-append name "-" version ".tar.gz")))) + "1v0scphivri1fk4hl20j13f92i48mnx1zsil4hgnadsmm4nsfw43")))) (home-page "https://github.com/brummer10/GxVoodoFuzz.lv2") (synopsis "Fuzz effect modelled after the Voodoo Lab SuperFuzz") (description "This package provides the LV2 plugin \"GxVoodooFuzz\", a @@ -2810,14 +2943,14 @@ parallel with a DarkBooster, followed by a volume control."))) (name "gx-super-fuzz-lv2") (version "0.1") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/brummer10/" - "GxSuperFuzz.lv2/archive/v" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/brummer10/GxSuperFuzz.lv2.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0pnivq05f1kji8c5jxsqdzhdfk3xn422v2d1x20x3jfsxnaf115x")) - (file-name (string-append name "-" version ".tar.gz")))) + "1jlljd9hlgfflbiizq47lv1xbbgjyx3v835mf24zmh1q5zsw4np4")))) (home-page "https://github.com/brummer10/GxSuperFuzz.lv2") (synopsis "Fuzz effect modelled after the UniVox SuperFuzz") (description "This package provides the LV2 plugin \"GxSuperFuzz\", an @@ -2830,22 +2963,22 @@ adjusts the amount of harmonics."))) (name "gx-vintage-fuzz-master-lv2") (version "0.1") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/brummer10/" - "GxVintageFuzzMaster.lv2/archive/v" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/brummer10/GxVintageFuzzMaster.lv2.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0bdkfj6xi2g4izfw3pmr4i0nqzg8jnkdwc23x9ifxwc6p1kbayzk")) - (file-name (string-append name "-" version ".tar.gz")))) + "02jb211z8rw2qr5r1z5mdxlqgiw6cbc319xpqplvn6k21c59mskv")))) (home-page "https://github.com/brummer10/GxVintageFuzzMaster.lv2") (synopsis "Fuzz effect simulation of the vintage Fuzz Master") (description "This package provides the LV2 plugin \"GxVintageFuzzMaster\", a simulation of the vintage Fuzz Master pedal."))) (define-public gx-slow-gear-lv2 - (let ((commit "cb852e0426f4e6fe077e7f1ede73a4da335cfc5e") - (revision "2")) + (let ((commit "5d37e775b0feef1d82feee94e2a7a2d7e57efe2d") + (revision "3")) (package (inherit gx-vbass-preamp-lv2) (name "gx-slow-gear-lv2") (version (string-append "0-" revision "." (string-take commit 9))) @@ -2856,7 +2989,7 @@ adjusts the amount of harmonics."))) (commit commit))) (sha256 (base32 - "0dp7afi1r3kzciiyn1hrkz6arsq47ys9sx5g4b7xa9k1dv92ishp")) + "141mz69zkhk3lm54bb6wgpnghb92zm1ig7fv07240cmhydqji1q1")) (file-name (string-append name "-" version "-checkout")))) (home-page "https://github.com/brummer10/GxSlowGear.lv2") (synopsis "Slow gear audio effect") @@ -2866,7 +2999,7 @@ slow gear audio effect to produce volume swells.")))) (define-public gx-switchless-wah-lv2 (let ((commit "7b08691203314612999f0ce2328cdc1161cd6665") (revision "2")) - (package (inherit gx-vbass-preamp-lv2) + (package (inherit gx-guvnor-lv2) (name "gx-switchless-wah-lv2") (version (string-append "0-" revision "." (string-take commit 9))) (source (origin @@ -2884,8 +3017,8 @@ slow gear audio effect to produce volume swells.")))) a simulation of an analog Wah pedal with switchless activation.")))) (define-public mod-utilities - (let ((commit "7cdeeac26ae682730740105ece121d4dddb8ba3f") - (revision "1")) + (let ((commit "80ea3ea9f52fab7f191671f4810bf90fc955a046") + (revision "2")) (package (name "mod-utilities") (version (string-append "0-" revision "." (string-take commit 9))) @@ -2894,17 +3027,19 @@ a simulation of an analog Wah pedal with switchless activation.")))) (uri (git-reference (url "https://github.com/moddevices/mod-utilities.git") (commit commit))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1ilnkbrmwrszxvc21qlb86h29yz7cnc6rcp0jmna1y693ny2qhf4")) - (file-name (string-append name "-" version "-checkout")))) + "1v55zmzmlg0ka7341x5lsvb44amy17vk27s669ps1basd1bk5s5v")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; there are no tests #:make-flags (list (string-append "INSTALL_PATH=" (assoc-ref %outputs "out") - "/lib/lv2")) + "/lib/lv2") + (string-append "PREFIX=" (assoc-ref %outputs "out")) + "CC=gcc") #:phases (modify-phases %standard-phases (delete 'configure)))) @@ -3005,14 +3140,14 @@ develop custom plugins for use in other applications without programming.") (define-public qmidiarp (package (name "qmidiarp") - (version "0.6.4") + (version "0.6.5") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/qmidiarp/qmidiarp/" version "/qmidiarp-" version ".tar.bz2")) (sha256 (base32 - "1gkfv8ajgf86kbn6j5ilfc1zlz17gdi9yxzywqd6jwff4xlm75hx")))) + "043yh1p0rrbj1v840y27529m9260g55gvh1km8az4jxy7mns58r2")))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -3548,3 +3683,71 @@ by The Echo Nest.") @url{https://gpodder.net} APIs. It allows applications to discover, manage and track podcasts.") (license license:lgpl2.1+))) + +(define-public sonivox-eas + (package + (name "sonivox-eas") + (version "1.1.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pedrolcl/Linux-SonivoxEas.git") + (commit (string-append "v" version)))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0l9gs00p5g4k4qy6i7nv1mfi2n2wnsycwjrgrh9hxzam4irf2mw2")))) + (build-system cmake-build-system) + (arguments '(#:tests? #f)) ; there are no tests + (inputs + `(("alsa-lib" ,alsa-lib) + ("drumstick" ,drumstick) + ("pulseaudio" ,pulseaudio) + ("qtbase" ,qtbase))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/pedrolcl/Linux-SonivoxEas") + (synopsis "MIDI synthesizer library") + (description "This project is a real time General MIDI synthesizer based +on the Sonivox EAS Synthesizer by Google. It does not need external +soundfonts, using embedded samples instead.") + ;; Sonivox is released under the ASL2.0; the rest of the code is under + ;; GPLv2+. + (license (list license:gpl2+ license:asl2.0)))) + +(define-public whysynth + (package + (name "whysynth") + (version "20170701") + (source (origin + (method url-fetch) + (uri (string-append "http://smbolton.com/whysynth/whysynth-" + version ".tar.bz2")) + (sha256 + (base32 + "02qbn0hbvn1iym4zxv35b201blg31yjpgh71h8db0j5zls2xc0m6")))) + (build-system gnu-build-system) + (inputs + `(("dssi" ,dssi) + ("liblo" ,liblo) + ("fftwf" ,fftwf) + ("gtk+" ,gtk+-2) + ("ladspa" ,ladspa) + ("alsa-lib" ,alsa-lib))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://smbolton.com/whysynth.html") + (synopsis "DSSI software synthesizer") + (description "WhySynth is a versatile softsynth which operates as a plugin +for the DSSI Soft Synth Interface. A brief list of features: + +@enumerate +@item 4 oscillators, 2 filters, 3 LFOs, and 5 envelope generators per voice. +@item 11 oscillator modes: minBLEP, wavecycle, chorused wavecycle, + asynchronous granular, three FM modes, waveshaper, noise, PADsynth, and phase + distortion. +@item 10 filter modes. +@item flexible modulation and mixdown options, plus effects. +@end enumerate +") + (license license:gpl2+))) diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index c60f255c3d..bf8e8c65d4 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -450,7 +450,7 @@ and up to 1 Mbit/s downstream.") (define-public whois (package (name "whois") - (version "5.2.18") + (version "5.2.19") (source (origin (method url-fetch) @@ -458,7 +458,7 @@ and up to 1 Mbit/s downstream.") name "_" version ".tar.xz")) (sha256 (base32 - "1mcpgj18n1xppvlhjqzpj05yr5z48bym9bd88k10fwgkmwk0spf3")))) + "0b16w48c17k35lhd95qcl2kjq2rahk8znkg3w467rf3kzmsa4fbc")))) (build-system gnu-build-system) ;; TODO: unbundle mkpasswd binary + its po files. (arguments @@ -471,13 +471,14 @@ and up to 1 Mbit/s downstream.") (add-before 'build 'setenv (lambda _ (setenv "HAVE_ICONV" "1") - (setenv "HAVE_LIBIDN" "1") #t))))) (inputs + ;; TODO: Switch to libidn2 when >= 2.0.3 is ungrafted in master. `(("libidn" ,libidn))) (native-inputs `(("gettext" ,gettext-minimal) - ("perl" ,perl))) + ("perl" ,perl) + ("pkg-config" ,pkg-config))) (synopsis "Improved whois client") (description "This whois client is intelligent and can automatically select the appropriate whois server for most queries. @@ -710,7 +711,7 @@ allows for heavy scripting.") (define-public perl-net-dns (package (name "perl-net-dns") - (version "1.13") + (version "1.14") (source (origin (method url-fetch) @@ -720,7 +721,7 @@ allows for heavy scripting.") ".tar.gz")) (sha256 (base32 - "0dlca65l45mqs7l58fg838bj3as5kmnbs1zy8vg9cbsz6rindivy")))) + "1z4r092qv0ify033dld5jayk8gs0bc7pl130dvb8ab7b9rcqmhw3")))) (build-system perl-build-system) (inputs `(("perl-digest-hmac" ,perl-digest-hmac))) diff --git a/gnu/packages/nutrition.scm b/gnu/packages/nutrition.scm index 90019f848c..0e03253cf1 100644 --- a/gnu/packages/nutrition.scm +++ b/gnu/packages/nutrition.scm @@ -52,11 +52,18 @@ (inputs `(("pygtk" ,python2-pygtk) ("sqlalchemy" ,python2-sqlalchemy) + ("python-lxml" ,python2-lxml) ("python-pillow" ,python2-pillow) ("elib.intl" ,python2-elib.intl))) (arguments `(#:python ,python-2 ;exception and print syntax - #:tests? #f)) ;tests look bitrotted + #:tests? #f ;tests look bitrotted + #:phases + (modify-phases %standard-phases + (replace 'install + (lambda* (#:key make-flags #:allow-other-keys) + (zero? (system* "python" "setup.py" "install" "--prefix" + (assoc-ref %outputs "out")))))))) (home-page "http://thinkle.github.io/gourmet/") (synopsis "Recipe organizer") (description diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index e9f48ea89d..7aeb4967bf 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -87,8 +87,8 @@ ;; Note: the 'update-guix-package.scm' script expects this definition to ;; start precisely like this. (let ((version "0.14.0") - (commit "ad4953bc0ec1684c49c0934304c7ec200a0cd280") - (revision 1)) + (commit "02345c963e1e8a45afcdf5acb80fca4538244b36") + (revision 2)) (package (name "guix") @@ -104,7 +104,7 @@ (commit commit))) (sha256 (base32 - "0ngra4cb1kf3kwccslmhnvlr116drsnbqrsjniq1hrg5mqf6vf1b")) + "0f33makasj14zf0zfv1w7k04bkcpdy5grx5b904vv5ygi5bak7nx")) (file-name (string-append "guix-" version "-checkout")))) (build-system gnu-build-system) (arguments diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm index 64168cc9d6..ffa152f279 100644 --- a/gnu/packages/password-utils.scm +++ b/gnu/packages/password-utils.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2017 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2017 Manolis Fragkiskos Ragkousis <manolis837@gmail.com> +;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -98,6 +99,10 @@ human.") (base32 "0wrl8kxb16wzdgfjj057yv18cfg0b8z8lxp1fl2q8fkdgr7phm9g")))) (build-system cmake-build-system) + (arguments + `(#:configure-flags + (list (string-append "-DCMAKE_INSTALL_LIBDIR=" + (assoc-ref %outputs "out") "/lib")))) (inputs `(("libgcrypt" ,libgcrypt) ("libxi" ,libxi) diff --git a/gnu/packages/patches/borg-fix-archive-corruption-bug.patch b/gnu/packages/patches/borg-fix-archive-corruption-bug.patch new file mode 100644 index 0000000000..0debf119be --- /dev/null +++ b/gnu/packages/patches/borg-fix-archive-corruption-bug.patch @@ -0,0 +1,68 @@ +Fix a bug in `borg check --repair` that corrupts existing archives: + +https://github.com/borgbackup/borg/issues/3444 + +Patches copied from upstream source repository: + +https://github.com/borgbackup/borg/commit/e09892caec8a63d59e909518c4e9c230dbd69774 +https://github.com/borgbackup/borg/commit/a68d28bfa4db30561150c83eb6a0dca5efa4d9e8 + +From a68d28bfa4db30561150c83eb6a0dca5efa4d9e8 Mon Sep 17 00:00:00 2001 +From: Thomas Waldmann <tw@waldmann-edv.de> +Date: Sat, 16 Dec 2017 01:11:40 +0100 +Subject: [PATCH 1/2] modify borg check unit test so it "hangs", see #3444 + +it doesn't infinitely hang, but slows down considerably. +--- + src/borg/testsuite/archiver.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/borg/testsuite/archiver.py b/src/borg/testsuite/archiver.py +index c7def2c7..b3383e97 100644 +--- a/src/borg/testsuite/archiver.py ++++ b/src/borg/testsuite/archiver.py +@@ -3006,7 +3006,7 @@ def test_missing_file_chunk(self): + def test_missing_archive_item_chunk(self): + archive, repository = self.open_archive('archive1') + with repository: +- repository.delete(archive.metadata.items[-5]) ++ repository.delete(archive.metadata.items[0]) + repository.commit() + self.cmd('check', self.repository_location, exit_code=1) + self.cmd('check', '--repair', self.repository_location, exit_code=0) +-- +2.15.1 + + +From e09892caec8a63d59e909518c4e9c230dbd69774 Mon Sep 17 00:00:00 2001 +From: Thomas Waldmann <tw@waldmann-edv.de> +Date: Sat, 16 Dec 2017 01:16:05 +0100 +Subject: [PATCH 2/2] check --repair: fix malfunctioning validator, fixes #3444 + +the major problem was the ('path' in item) expression. +the dict has bytes-typed keys there, so it never succeeded as it +looked for a str key. this is a 1.1 regression, 1.0 was fine. + +the dict -> StableDict change is just for being more specific, +the check triggered correctly as StableDict subclasses dict, +it was just a bit too general. +--- + src/borg/archive.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/borg/archive.py b/src/borg/archive.py +index 239d00b7..be086800 100644 +--- a/src/borg/archive.py ++++ b/src/borg/archive.py +@@ -1457,7 +1457,7 @@ def robust_iterator(archive): + """ + item_keys = frozenset(key.encode() for key in self.manifest.item_keys) + required_item_keys = frozenset(key.encode() for key in REQUIRED_ITEM_KEYS) +- unpacker = RobustUnpacker(lambda item: isinstance(item, dict) and 'path' in item, ++ unpacker = RobustUnpacker(lambda item: isinstance(item, StableDict) and b'path' in item, + self.manifest.item_keys) + _state = 0 + +-- +2.15.1 + diff --git a/gnu/packages/patches/eigen-arm-neon-fixes.patch b/gnu/packages/patches/eigen-arm-neon-fixes.patch new file mode 100644 index 0000000000..0838f30463 --- /dev/null +++ b/gnu/packages/patches/eigen-arm-neon-fixes.patch @@ -0,0 +1,245 @@ +# HG changeset patch +# User Gael Guennebaud <g.gael@free.fr> +# Date 1497514590 -7200 +# Node ID d781c1de98342c5ca29c2fe719d8d3c96a35dcd4 +# Parent 48cd83b2b459aa9f3f5dca135d38760fe0b02a2f +Bug 1436: fix compilation of Jacobi rotations with ARM NEON, some specializations of internal::conj_helper were missing. + +diff --git a/Eigen/Core b/Eigen/Core +--- a/Eigen/Core ++++ b/Eigen/Core +@@ -371,6 +371,7 @@ + #include "src/Core/MathFunctions.h" + #include "src/Core/GenericPacketMath.h" + #include "src/Core/MathFunctionsImpl.h" ++#include "src/Core/arch/Default/ConjHelper.h" + + #if defined EIGEN_VECTORIZE_AVX512 + #include "src/Core/arch/SSE/PacketMath.h" +diff --git a/Eigen/src/Core/arch/AVX/Complex.h b/Eigen/src/Core/arch/AVX/Complex.h +--- a/Eigen/src/Core/arch/AVX/Complex.h ++++ b/Eigen/src/Core/arch/AVX/Complex.h +@@ -204,23 +204,7 @@ + } + }; + +-template<> struct conj_helper<Packet8f, Packet4cf, false,false> +-{ +- EIGEN_STRONG_INLINE Packet4cf pmadd(const Packet8f& x, const Packet4cf& y, const Packet4cf& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet4cf pmul(const Packet8f& x, const Packet4cf& y) const +- { return Packet4cf(Eigen::internal::pmul(x, y.v)); } +-}; +- +-template<> struct conj_helper<Packet4cf, Packet8f, false,false> +-{ +- EIGEN_STRONG_INLINE Packet4cf pmadd(const Packet4cf& x, const Packet8f& y, const Packet4cf& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet4cf pmul(const Packet4cf& x, const Packet8f& y) const +- { return Packet4cf(Eigen::internal::pmul(x.v, y)); } +-}; ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet4cf,Packet8f) + + template<> EIGEN_STRONG_INLINE Packet4cf pdiv<Packet4cf>(const Packet4cf& a, const Packet4cf& b) + { +@@ -400,23 +384,7 @@ + } + }; + +-template<> struct conj_helper<Packet4d, Packet2cd, false,false> +-{ +- EIGEN_STRONG_INLINE Packet2cd pmadd(const Packet4d& x, const Packet2cd& y, const Packet2cd& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet2cd pmul(const Packet4d& x, const Packet2cd& y) const +- { return Packet2cd(Eigen::internal::pmul(x, y.v)); } +-}; +- +-template<> struct conj_helper<Packet2cd, Packet4d, false,false> +-{ +- EIGEN_STRONG_INLINE Packet2cd pmadd(const Packet2cd& x, const Packet4d& y, const Packet2cd& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet2cd pmul(const Packet2cd& x, const Packet4d& y) const +- { return Packet2cd(Eigen::internal::pmul(x.v, y)); } +-}; ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cd,Packet4d) + + template<> EIGEN_STRONG_INLINE Packet2cd pdiv<Packet2cd>(const Packet2cd& a, const Packet2cd& b) + { +diff --git a/Eigen/src/Core/arch/AltiVec/Complex.h b/Eigen/src/Core/arch/AltiVec/Complex.h +--- a/Eigen/src/Core/arch/AltiVec/Complex.h ++++ b/Eigen/src/Core/arch/AltiVec/Complex.h +@@ -224,23 +224,7 @@ + } + }; + +-template<> struct conj_helper<Packet4f, Packet2cf, false,false> +-{ +- EIGEN_STRONG_INLINE Packet2cf pmadd(const Packet4f& x, const Packet2cf& y, const Packet2cf& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet2cf pmul(const Packet4f& x, const Packet2cf& y) const +- { return Packet2cf(internal::pmul<Packet4f>(x, y.v)); } +-}; +- +-template<> struct conj_helper<Packet2cf, Packet4f, false,false> +-{ +- EIGEN_STRONG_INLINE Packet2cf pmadd(const Packet2cf& x, const Packet4f& y, const Packet2cf& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet2cf pmul(const Packet2cf& x, const Packet4f& y) const +- { return Packet2cf(internal::pmul<Packet4f>(x.v, y)); } +-}; ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) + + template<> EIGEN_STRONG_INLINE Packet2cf pdiv<Packet2cf>(const Packet2cf& a, const Packet2cf& b) + { +@@ -416,23 +400,8 @@ + return pconj(internal::pmul(a, b)); + } + }; +-template<> struct conj_helper<Packet2d, Packet1cd, false,false> +-{ +- EIGEN_STRONG_INLINE Packet1cd pmadd(const Packet2d& x, const Packet1cd& y, const Packet1cd& c) const +- { return padd(c, pmul(x,y)); } + +- EIGEN_STRONG_INLINE Packet1cd pmul(const Packet2d& x, const Packet1cd& y) const +- { return Packet1cd(internal::pmul<Packet2d>(x, y.v)); } +-}; +- +-template<> struct conj_helper<Packet1cd, Packet2d, false,false> +-{ +- EIGEN_STRONG_INLINE Packet1cd pmadd(const Packet1cd& x, const Packet2d& y, const Packet1cd& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet1cd pmul(const Packet1cd& x, const Packet2d& y) const +- { return Packet1cd(internal::pmul<Packet2d>(x.v, y)); } +-}; ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) + + template<> EIGEN_STRONG_INLINE Packet1cd pdiv<Packet1cd>(const Packet1cd& a, const Packet1cd& b) + { +diff --git a/Eigen/src/Core/arch/Default/ConjHelper.h b/Eigen/src/Core/arch/Default/ConjHelper.h +new file mode 100644 +--- /dev/null ++++ b/Eigen/src/Core/arch/Default/ConjHelper.h +@@ -0,0 +1,29 @@ ++ ++// This file is part of Eigen, a lightweight C++ template library ++// for linear algebra. ++// ++// Copyright (C) 2017 Gael Guennebaud <gael.guennebaud@inria.fr> ++// ++// This Source Code Form is subject to the terms of the Mozilla ++// Public License v. 2.0. If a copy of the MPL was not distributed ++// with this file, You can obtain one at http://mozilla.org/MPL/2.0/. ++ ++#ifndef EIGEN_ARCH_CONJ_HELPER_H ++#define EIGEN_ARCH_CONJ_HELPER_H ++ ++#define EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(PACKET_CPLX, PACKET_REAL) \ ++ template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> { \ ++ EIGEN_STRONG_INLINE PACKET_CPLX pmadd(const PACKET_REAL& x, const PACKET_CPLX& y, const PACKET_CPLX& c) const \ ++ { return padd(c, pmul(x,y)); } \ ++ EIGEN_STRONG_INLINE PACKET_CPLX pmul(const PACKET_REAL& x, const PACKET_CPLX& y) const \ ++ { return PACKET_CPLX(Eigen::internal::pmul<PACKET_REAL>(x, y.v)); } \ ++ }; \ ++ \ ++ template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> { \ ++ EIGEN_STRONG_INLINE PACKET_CPLX pmadd(const PACKET_CPLX& x, const PACKET_REAL& y, const PACKET_CPLX& c) const \ ++ { return padd(c, pmul(x,y)); } \ ++ EIGEN_STRONG_INLINE PACKET_CPLX pmul(const PACKET_CPLX& x, const PACKET_REAL& y) const \ ++ { return PACKET_CPLX(Eigen::internal::pmul<PACKET_REAL>(x.v, y)); } \ ++ }; ++ ++#endif // EIGEN_ARCH_CONJ_HELPER_H +diff --git a/Eigen/src/Core/arch/NEON/Complex.h b/Eigen/src/Core/arch/NEON/Complex.h +--- a/Eigen/src/Core/arch/NEON/Complex.h ++++ b/Eigen/src/Core/arch/NEON/Complex.h +@@ -265,6 +265,8 @@ + } + }; + ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ++ + template<> EIGEN_STRONG_INLINE Packet2cf pdiv<Packet2cf>(const Packet2cf& a, const Packet2cf& b) + { + // TODO optimize it for NEON +@@ -456,6 +458,8 @@ + } + }; + ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ++ + template<> EIGEN_STRONG_INLINE Packet1cd pdiv<Packet1cd>(const Packet1cd& a, const Packet1cd& b) + { + // TODO optimize it for NEON +diff --git a/Eigen/src/Core/arch/SSE/Complex.h b/Eigen/src/Core/arch/SSE/Complex.h +--- a/Eigen/src/Core/arch/SSE/Complex.h ++++ b/Eigen/src/Core/arch/SSE/Complex.h +@@ -229,23 +229,7 @@ + } + }; + +-template<> struct conj_helper<Packet4f, Packet2cf, false,false> +-{ +- EIGEN_STRONG_INLINE Packet2cf pmadd(const Packet4f& x, const Packet2cf& y, const Packet2cf& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet2cf pmul(const Packet4f& x, const Packet2cf& y) const +- { return Packet2cf(Eigen::internal::pmul<Packet4f>(x, y.v)); } +-}; +- +-template<> struct conj_helper<Packet2cf, Packet4f, false,false> +-{ +- EIGEN_STRONG_INLINE Packet2cf pmadd(const Packet2cf& x, const Packet4f& y, const Packet2cf& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet2cf pmul(const Packet2cf& x, const Packet4f& y) const +- { return Packet2cf(Eigen::internal::pmul<Packet4f>(x.v, y)); } +-}; ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) + + template<> EIGEN_STRONG_INLINE Packet2cf pdiv<Packet2cf>(const Packet2cf& a, const Packet2cf& b) + { +@@ -430,23 +414,7 @@ + } + }; + +-template<> struct conj_helper<Packet2d, Packet1cd, false,false> +-{ +- EIGEN_STRONG_INLINE Packet1cd pmadd(const Packet2d& x, const Packet1cd& y, const Packet1cd& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet1cd pmul(const Packet2d& x, const Packet1cd& y) const +- { return Packet1cd(Eigen::internal::pmul<Packet2d>(x, y.v)); } +-}; +- +-template<> struct conj_helper<Packet1cd, Packet2d, false,false> +-{ +- EIGEN_STRONG_INLINE Packet1cd pmadd(const Packet1cd& x, const Packet2d& y, const Packet1cd& c) const +- { return padd(c, pmul(x,y)); } +- +- EIGEN_STRONG_INLINE Packet1cd pmul(const Packet1cd& x, const Packet2d& y) const +- { return Packet1cd(Eigen::internal::pmul<Packet2d>(x.v, y)); } +-}; ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) + + template<> EIGEN_STRONG_INLINE Packet1cd pdiv<Packet1cd>(const Packet1cd& a, const Packet1cd& b) + { +diff --git a/Eigen/src/Core/arch/ZVector/Complex.h b/Eigen/src/Core/arch/ZVector/Complex.h +--- a/Eigen/src/Core/arch/ZVector/Complex.h ++++ b/Eigen/src/Core/arch/ZVector/Complex.h +@@ -336,6 +336,9 @@ + } + }; + ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ++EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ++ + template<> EIGEN_STRONG_INLINE Packet1cd pdiv<Packet1cd>(const Packet1cd& a, const Packet1cd& b) + { + // TODO optimize it for AltiVec diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch deleted file mode 100644 index dbcaea1343..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch +++ /dev/null @@ -1,137 +0,0 @@ -http://www.openwall.com/lists/oss-security/2017/09/01/6 - -CVE-2017-11403: -http://hg.code.sf.net/p/graphicsmagick/code/rev/d0a76868ca37 - -CVE-2017-14103: -http://hg.code.sf.net/p/graphicsmagick/code/rev/98721124e51f - -some changes were made to make the patch apply - -# HG changeset patch -# User Glenn Randers-Pehrson <glennrp+bmo@gmail.com> -# Date 1503875721 14400 -# Node ID 98721124e51fd5ec0c6fba64bce2e218869632d2 -# Parent f0f2ea85a2930f3b6dcd72352719adb9660f2aad -Attempt to fix Issue 440. - -diff -ru a/coders/png.c b/coders/png.c ---- a/coders/png.c 1969-12-31 19:00:00.000000000 -0500 -+++ b/coders/png.c 2017-09-10 11:31:56.543194173 -0400 -@@ -3106,7 +3106,9 @@ - if (length > PNG_MAX_UINT || count == 0) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(CorruptImageError,CorruptImage,image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "chunk length (%lu) > PNG_MAX_UINT",length); -+ return ((Image*)NULL); - } - - chunk=(unsigned char *) NULL; -@@ -3117,13 +3119,16 @@ - if (chunk == (unsigned char *) NULL) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(ResourceLimitError,MemoryAllocationFailed, -- image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " Could not allocate chunk memory"); -+ return ((Image*)NULL); - } - if (ReadBlob(image,length,chunk) < length) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(CorruptImageError,CorruptImage,image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " chunk reading was incomplete"); -+ return ((Image*)NULL); - } - p=chunk; - } -@@ -3198,7 +3203,7 @@ - jng_width, jng_height); - MagickFreeMemory(chunk); - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(CorruptImageError,ImproperImageHeader,image); -+ return ((Image *)NULL); - } - - /* Temporarily set width and height resources to match JHDR */ -@@ -3233,8 +3238,9 @@ - if (color_image == (Image *) NULL) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(ResourceLimitError,MemoryAllocationFailed, -- image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " could not open color_image blob"); -+ return ((Image *)NULL); - } - if (logging) - (void) LogMagickEvent(CoderEvent,GetMagickModule(), -@@ -3245,7 +3251,9 @@ - if (status == MagickFalse) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(CoderError,UnableToOpenBlob,color_image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " could not open color_image blob"); -+ return ((Image *)NULL); - } - - if (!image_info->ping && jng_color_type >= 12) -@@ -3255,17 +3263,18 @@ - if (alpha_image_info == (ImageInfo *) NULL) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(ResourceLimitError, -- MemoryAllocationFailed, image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " could not allocate alpha_image_info",length); -+ return ((Image *)NULL); - } - GetImageInfo(alpha_image_info); - alpha_image=AllocateImage(alpha_image_info); - if (alpha_image == (Image *) NULL) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- ThrowReaderException(ResourceLimitError, -- MemoryAllocationFailed, -- alpha_image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " could not allocate alpha_image"); -+ return ((Image *)NULL); - } - if (logging) - (void) LogMagickEvent(CoderEvent,GetMagickModule(), -@@ -3277,7 +3286,9 @@ - { - DestroyJNGInfo(color_image_info,alpha_image_info); - DestroyImage(alpha_image); -- ThrowReaderException(CoderError,UnableToOpenBlob,image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " could not allocate alpha_image blob"); -+ return ((Image *)NULL); - } - if (jng_alpha_compression_method == 0) - { -@@ -3613,6 +3624,8 @@ - alpha_image = (Image *)NULL; - DestroyImageInfo(alpha_image_info); - alpha_image_info = (ImageInfo *)NULL; -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " Destroy the JNG image"); - DestroyImage(jng_image); - jng_image = (Image *)NULL; - } -@@ -5146,8 +5159,8 @@ - - if (image == (Image *) NULL) - { -- DestroyImageList(previous); - CloseBlob(previous); -+ DestroyImageList(previous); - MngInfoFreeStruct(mng_info,&have_mng_structure); - return((Image *) NULL); - } diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch deleted file mode 100644 index 2cb3d46f62..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch +++ /dev/null @@ -1,28 +0,0 @@ -This patch comes from http://hg.code.sf.net/p/graphicsmagick/code/rev/cd699a44f188. - -diff -ur a/coders/png.c b/coders/png.c ---- a/coders/png.c 2017-07-04 17:32:08.000000000 -0400 -+++ b/coders/png.c 2017-08-19 11:16:20.933969362 -0400 -@@ -4101,11 +4101,17 @@ - mng_info->image=image; - } - -- if ((mng_info->mng_width > 65535L) || (mng_info->mng_height -- > 65535L)) -- (void) ThrowException(&image->exception,ImageError, -- WidthOrHeightExceedsLimit, -- image->filename); -+ if ((mng_info->mng_width > 65535L) || -+ (mng_info->mng_height > 65535L)) -+ { -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " MNG width or height is too large: %lu, %lu", -+ mng_info->mng_width,mng_info->mng_height); -+ MagickFreeMemory(chunk); -+ ThrowReaderException(CorruptImageError, -+ ImproperImageHeader,image); -+ } -+ - FormatString(page_geometry,"%lux%lu+0+0",mng_info->mng_width, - mng_info->mng_height); - mng_info->frame.left=0; diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch deleted file mode 100644 index 7036f37438..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch +++ /dev/null @@ -1,16 +0,0 @@ -This patch comes from http://hg.code.sf.net/p/graphicsmagick/code/rev/be898b7c97bd. - -diff -ur a/coders/wmf.c b/coders/wmf.c ---- a/coders/wmf.c 2016-09-05 15:20:23.000000000 -0400 -+++ b/coders/wmf.c 2017-08-19 10:38:08.984187264 -0400 -@@ -2719,8 +2719,8 @@ - if(image->exception.severity != UndefinedException) - ThrowException2(exception, - CoderWarning, -- ddata->image->exception.reason, -- ddata->image->exception.description); -+ image->exception.reason, -+ image->exception.description); - - if(logging) - (void) LogMagickEvent(CoderEvent,GetMagickModule(),"leave ReadWMFImage()"); diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch deleted file mode 100644 index 71af9ffe59..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch +++ /dev/null @@ -1,28 +0,0 @@ -This patch comes from http://hg.code.sf.net/p/graphicsmagick/code/rev/95d00d55e978. - -diff -ur a/coders/sun.c b/coders/sun.c ---- a/coders/sun.c 2016-05-30 13:19:54.000000000 -0400 -+++ b/coders/sun.c 2017-08-18 18:00:00.191023610 -0400 -@@ -1,5 +1,5 @@ - /* --% Copyright (C) 2003-2015 GraphicsMagick Group -+% Copyright (C) 2003-2017 GraphicsMagick Group - % Copyright (C) 2002 ImageMagick Studio - % Copyright 1991-1999 E. I. du Pont de Nemours and Company - % -@@ -577,6 +577,7 @@ - for (bit=7; bit >= 0; bit--) - { - index=((*p) & (0x01 << bit) ? 0x01 : 0x00); -+ VerifyColormapIndex(image,index); - indexes[x+7-bit]=index; - q[x+7-bit]=image->colormap[index]; - } -@@ -587,6 +588,7 @@ - for (bit=7; bit >= (long) (8-(image->columns % 8)); bit--) - { - index=((*p) & (0x01 << bit) ? 0x01 : 0x00); -+ VerifyColormapIndex(image,index); - indexes[x+7-bit]=index; - q[x+7-bit]=image->colormap[index]; - } diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch deleted file mode 100644 index 83478c13b3..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch +++ /dev/null @@ -1,195 +0,0 @@ -http://openwall.com/lists/oss-security/2017/08/31/3 -http://hg.code.sf.net/p/graphicsmagick/code/raw-rev/b037d79b6ccd - -some changes were made to make the patch apply - -# HG changeset patch -# User Bob Friesenhahn <bfriesen@GraphicsMagick.org> -# Date 1503774853 18000 -# Node ID b037d79b6ccd0cfba7ba9ce09b454ed46d688036 -# Parent 198ea602ea7cc767dc3022bbcf887bcd4534158d -JNX: Fix DOS issues - -diff -r 198ea602ea7c -r b037d79b6ccd coders/jnx.c ---- a/coders/jnx.c Tue Aug 22 08:08:30 2017 -0500 -+++ b/coders/jnx.c Sat Aug 26 14:14:13 2017 -0500 -@@ -1,5 +1,5 @@ - /* --% Copyright (C) 2012-2015 GraphicsMagick Group -+% Copyright (C) 2012-2017 GraphicsMagick Group - % - % This program is covered by multiple licenses, which are described in - % Copyright.txt. You should have received a copy of Copyright.txt with this -@@ -100,6 +100,7 @@ - - char img_label_str[MaxTextExtent]; - -+ - alloc_size = TileInfo->PicSize + 2; - - if (image->logging) -@@ -242,6 +243,9 @@ - total_tiles, - current_tile; - -+ magick_off_t -+ file_size; -+ - /* Open image file. */ - assert(image_info != (const ImageInfo *) NULL); - assert(image_info->signature == MagickSignature); -@@ -254,9 +258,8 @@ - if (status == False) - ThrowReaderException(FileOpenError, UnableToOpenFile, image); - -- memset(JNXLevelInfo, 0, sizeof(JNXLevelInfo)); -- - /* Read JNX image header. */ -+ (void) memset(&JNXHeader, 0, sizeof(JNXHeader)); - JNXHeader.Version = ReadBlobLSBLong(image); - if (JNXHeader.Version > 4) - ThrowReaderException(CorruptImageError, ImproperImageHeader, image); -@@ -266,8 +269,6 @@ - JNXHeader.MapBounds.SouthWest.lat = ReadBlobLSBLong(image); - JNXHeader.MapBounds.SouthWest.lon = ReadBlobLSBLong(image); - JNXHeader.Levels = ReadBlobLSBLong(image); -- if (JNXHeader.Levels > 20) -- ThrowReaderException(CorruptImageError, ImproperImageHeader, image); - JNXHeader.Expiration = ReadBlobLSBLong(image); - JNXHeader.ProductID = ReadBlobLSBLong(image); - JNXHeader.CRC = ReadBlobLSBLong(image); -@@ -279,7 +280,41 @@ - if (EOFBlob(image)) - ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); - -+ file_size = GetBlobSize(image); -+ -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "JNX Header:\n" -+ " Version: %u\n" -+ " DeviceSN: %u\n" -+ " MapBounds:\n" -+ " NorthEast: lat = %u, lon = %u\n" -+ " SouthWest: lat = %u, lon = %u\n" -+ " Levels: %u\n" -+ " Expiration: %u\n" -+ " ProductID: %u\n" -+ " CRC: %u\n" -+ " SigVersion: %u\n" -+ " SigOffset: %u\n" -+ " ZOrder: %u", -+ JNXHeader.Version, -+ JNXHeader.DeviceSN, -+ JNXHeader.MapBounds.NorthEast.lat, -+ JNXHeader.MapBounds.NorthEast.lon, -+ JNXHeader.MapBounds.SouthWest.lat, -+ JNXHeader.MapBounds.SouthWest.lon, -+ JNXHeader.Levels, -+ JNXHeader.Expiration, -+ JNXHeader.ProductID, -+ JNXHeader.CRC, -+ JNXHeader.SigVersion, -+ JNXHeader.SigOffset, -+ JNXHeader.ZOrder); -+ -+ if (JNXHeader.Levels > 20) -+ ThrowReaderException(CorruptImageError, ImproperImageHeader, image); -+ - /* Read JNX image level info. */ -+ memset(JNXLevelInfo, 0, sizeof(JNXLevelInfo)); - total_tiles = 0; - current_tile = 0; - for (i = 0; i < JNXHeader.Levels; i++) -@@ -302,11 +337,23 @@ - { - JNXLevelInfo[i].Copyright = NULL; - } -+ -+ if (EOFBlob(image)) -+ ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); -+ -+ if (image->logging) -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "Level[%u] Info:" -+ " TileCount: %4u" -+ " TilesOffset: %6u" -+ " Scale: %04u", -+ i, -+ JNXLevelInfo[i].TileCount, -+ JNXLevelInfo[i].TilesOffset, -+ JNXLevelInfo[i].Scale -+ ); - } - -- if (EOFBlob(image)) -- ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); -- - /* Get the current limit */ - SaveLimit = GetMagickResourceLimit(MapResource); - -@@ -316,11 +363,32 @@ - /* Read JNX image data. */ - for (i = 0; i < JNXHeader.Levels; i++) - { -+ /* -+ Validate TileCount against remaining file data -+ */ -+ const magick_off_t current_offset = TellBlob(image); -+ const size_t pos_list_entry_size = -+ sizeof(magick_uint32_t) + sizeof(magick_uint32_t) + sizeof(magick_uint32_t) + -+ sizeof(magick_uint32_t) + sizeof(magick_uint16_t) + sizeof(magick_uint16_t) + -+ sizeof(magick_uint32_t) + sizeof(magick_uint32_t); -+ const magick_off_t remaining = file_size-current_offset; -+ const size_t needed = MagickArraySize(pos_list_entry_size,JNXLevelInfo[i].TileCount); -+ -+ if ((needed == 0U) || (remaining <= 0) || (remaining < (magick_off_t) needed)) -+ { -+ (void) SetMagickResourceLimit(MapResource, SaveLimit); -+ ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); -+ } -+ - PositionList = MagickAllocateArray(TJNXTileInfo *, - JNXLevelInfo[i].TileCount, - sizeof(TJNXTileInfo)); - if (PositionList == NULL) -- continue; -+ { -+ (void) SetMagickResourceLimit(MapResource, SaveLimit); -+ ThrowReaderException(ResourceLimitError,MemoryAllocationFailed, -+ image); -+ } - - (void) SeekBlob(image, JNXLevelInfo[i].TilesOffset, SEEK_SET); - for (j = 0; j < JNXLevelInfo[i].TileCount; j++) -@@ -333,12 +401,15 @@ - PositionList[j].PicHeight = ReadBlobLSBShort(image); - PositionList[j].PicSize = ReadBlobLSBLong(image); - PositionList[j].PicOffset = ReadBlobLSBLong(image); -- } - -- if (EOFBlob(image)) -- { -- MagickFreeMemory(PositionList); -- ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); -+ if (EOFBlob(image) || -+ ((magick_off_t) PositionList[j].PicOffset + -+ PositionList[j].PicSize > file_size)) -+ { -+ (void) SetMagickResourceLimit(MapResource, SaveLimit); -+ MagickFreeMemory(PositionList); -+ ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); -+ } - } - - for (j = 0; j < JNXLevelInfo[i].TileCount; j++) -@@ -351,6 +422,9 @@ - image = ExtractTileJPG(image, image_info, PositionList+j, exception); - (void) SetMonitorHandler(previous_handler); - -+ if (exception->severity >= ErrorException) -+ break; -+ - current_tile++; - if (QuantumTick(current_tile,total_tiles)) - if (!MagickMonitorFormatted(current_tile,total_tiles,exception, - diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch deleted file mode 100644 index e129fd58fc..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch +++ /dev/null @@ -1,179 +0,0 @@ -http://openwall.com/lists/oss-security/2017/08/31/1 -http://openwall.com/lists/oss-security/2017/08/31/2 -http://hg.code.sf.net/p/graphicsmagick/code/raw-rev/233a720bfd5e - -some changes were made to make the patch apply - -# HG changeset patch -# User Bob Friesenhahn <bfriesen@GraphicsMagick.org> -# Date 1503779175 18000 -# Node ID 233a720bfd5efd378f133a776507ed41230da617 -# Parent b037d79b6ccd0cfba7ba9ce09b454ed46d688036 -XBM: Fix DOS issues. - -diff -r b037d79b6ccd -r 233a720bfd5e coders/xbm.c ---- a/coders/xbm.c Sat Aug 26 14:14:13 2017 -0500 -+++ b/coders/xbm.c Sat Aug 26 15:26:15 2017 -0500 -@@ -1,5 +1,5 @@ - /* --% Copyright (C) 2003 -2012 GraphicsMagick Group -+% Copyright (C) 2003-2017 GraphicsMagick Group - % Copyright (C) 2002 ImageMagick Studio - % Copyright 1991-1999 E. I. du Pont de Nemours and Company - % -@@ -121,13 +121,15 @@ - - static int XBMInteger(Image *image,short int *hex_digits) - { -+ unsigned int -+ flag; -+ - int - c, -- flag, - value; - - value=0; -- flag=0; -+ flag=0U; - for ( ; ; ) - { - c=ReadBlobByte(image); -@@ -158,18 +160,14 @@ - Image - *image; - -- int -- bit; -- -- long -- y; -- - register IndexPacket - *indexes; - -- register long -+ register size_t -+ bytes_per_line, - i, -- x; -+ x, -+ y; - - register PixelPacket - *q; -@@ -177,22 +175,24 @@ - register unsigned char - *p; - -- short int -- hex_digits[256]; -- - unsigned char - *data; - - unsigned int -+ bit, -+ byte, -+ padding, -+ version; -+ -+ int -+ value; -+ -+ short int -+ hex_digits[256]; -+ -+ MagickPassFail - status; - -- unsigned long -- byte, -- bytes_per_line, -- padding, -- value, -- version; -- - /* - Open image file. - */ -@@ -207,6 +207,8 @@ - /* - Read X bitmap header. - */ -+ (void) memset(buffer,0,sizeof(buffer)); -+ name[0]='\0'; - while (ReadBlobString(image,buffer) != (char *) NULL) - if (sscanf(buffer,"#define %s %lu",name,&image->columns) == 2) - if ((strlen(name) >= 6) && -@@ -278,6 +280,8 @@ - /* - Initialize hex values. - */ -+ for (i = 0; i < sizeof(hex_digits)/sizeof(hex_digits[0]); i++) -+ hex_digits[i]=(-1); - hex_digits['0']=0; - hex_digits['1']=1; - hex_digits['2']=2; -@@ -311,40 +315,50 @@ - */ - p=data; - if (version == 10) -- for (i=0; i < (long) (bytes_per_line*image->rows); (i+=2)) -+ for (i=0; i < (bytes_per_line*image->rows); (i+=2)) - { - value=XBMInteger(image,hex_digits); -+ if (value < 0) -+ { -+ MagickFreeMemory(data); -+ ThrowReaderException(CorruptImageError,ImproperImageHeader,image); -+ } - *p++=(unsigned char) value; - if (!padding || ((i+2) % bytes_per_line)) - *p++=(unsigned char) (value >> 8); - } - else -- for (i=0; i < (long) (bytes_per_line*image->rows); i++) -+ for (i=0; i < (bytes_per_line*image->rows); i++) - { - value=XBMInteger(image,hex_digits); -+ if (value < 0) -+ { -+ MagickFreeMemory(data); -+ ThrowReaderException(CorruptImageError,ImproperImageHeader,image); -+ } - *p++=(unsigned char) value; - } - /* - Convert X bitmap image to pixel packets. - */ - p=data; -- for (y=0; y < (long) image->rows; y++) -+ for (y=0; y < image->rows; y++) - { - q=SetImagePixels(image,0,y,image->columns,1); - if (q == (PixelPacket *) NULL) - break; - indexes=AccessMutableIndexes(image); -- bit=0; -- byte=0; -- for (x=0; x < (long) image->columns; x++) -+ bit=0U; -+ byte=0U; -+ for (x=0; x < image->columns; x++) - { -- if (bit == 0) -+ if (bit == 0U) - byte=(*p++); - indexes[x]=byte & 0x01 ? 0x01 : 0x00; - bit++; -- byte>>=1; -- if (bit == 8) -- bit=0; -+ byte>>=1U; -+ if (bit == 8U) -+ bit=0U; - } - if (!SyncImagePixels(image)) - break; - diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch deleted file mode 100644 index 46f6b032c7..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch +++ /dev/null @@ -1,80 +0,0 @@ -http://openwall.com/lists/oss-security/2017/08/28/5 -http://hg.code.sf.net/p/graphicsmagick/code/rev/3bbf7a13643d - -some changes were made to make the patch apply - -# HG changeset patch -# User Bob Friesenhahn <bfriesen@GraphicsMagick.org> -# Date 1503268616 18000 -# Node ID 3bbf7a13643df3be76b0e19088a6cc632eea2072 -# Parent 83a5b946180835f260bcb91e3d06327a8e2577e3 -PNM: For binary formats, verify sufficient backing file data before memory request. - -diff -r 83a5b9461808 -r 3bbf7a13643d coders/pnm.c ---- a/coders/pnm.c Sun Aug 20 17:31:35 2017 -0500 -+++ b/coders/pnm.c Sun Aug 20 17:36:56 2017 -0500 -@@ -569,7 +569,7 @@ - (void) LogMagickEvent(CoderEvent,GetMagickModule(),"Colors: %u", - image->colors); - } -- number_pixels=image->columns*image->rows; -+ number_pixels=MagickArraySize(image->columns,image->rows); - if (number_pixels == 0) - ThrowReaderException(CorruptImageError,NegativeOrZeroImageSize,image); - if (image->storage_class == PseudoClass) -@@ -858,14 +858,14 @@ - if (1 == bits_per_sample) - { - /* PBM */ -- bytes_per_row=((image->columns+7) >> 3); -+ bytes_per_row=((image->columns+7U) >> 3); - import_options.grayscale_miniswhite=MagickTrue; - quantum_type=GrayQuantum; - } - else - { - /* PGM & XV_332 */ -- bytes_per_row=((bits_per_sample+7)/8)*image->columns; -+ bytes_per_row=MagickArraySize(((bits_per_sample+7U)/8U),image->columns); - if (XV_332_Format == format) - { - quantum_type=IndexQuantum; -@@ -878,7 +878,8 @@ - } - else - { -- bytes_per_row=(((bits_per_sample+7)/8)*samples_per_pixel)*image->columns; -+ bytes_per_row=MagickArraySize((((bits_per_sample+7)/8)*samples_per_pixel), -+ image->columns); - if (3 == samples_per_pixel) - { - /* PPM */ -@@ -915,6 +916,28 @@ - is_monochrome=MagickFalse; - } - } -+ -+ /* Validate file size before allocating memory */ -+ if (BlobIsSeekable(image)) -+ { -+ const magick_off_t file_size = GetBlobSize(image); -+ const magick_off_t current_offset = TellBlob(image); -+ if ((file_size > 0) && -+ (current_offset > 0) && -+ (file_size > current_offset)) -+ { -+ const magick_off_t remaining = file_size-current_offset; -+ const magick_off_t needed = (magick_off_t) image->rows * -+ (magick_off_t) bytes_per_row; -+ if ((remaining < (magick_off_t) bytes_per_row) || -+ (remaining < needed)) -+ { -+ ThrowException(exception,CorruptImageError,UnexpectedEndOfFile, -+ image->filename); -+ break; -+ } -+ } -+ } - - scanline_set=AllocateThreadViewDataArray(image,exception,bytes_per_row,1); - if (scanline_set == (ThreadViewDataSet *) NULL) diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch deleted file mode 100644 index 1f55d90d38..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch +++ /dev/null @@ -1,72 +0,0 @@ -http://hg.code.sf.net/p/graphicsmagick/code/raw-rev/493da54370aa -http://openwall.com/lists/oss-security/2017/09/06/4 - -some changes were made to make the patch apply - -# HG changeset patch -# User Bob Friesenhahn <bfriesen@GraphicsMagick.org> -# Date 1503257388 18000 -# Node ID 493da54370aa42cb430c52a69eb75db0001a5589 -# Parent f8724674907902b7bc37c04f252fe30fbdd88e6f -SUN: Verify that file header data length, and file length are sufficient for claimed image dimensions. - -diff -r f87246749079 -r 493da54370aa coders/sun.c ---- a/coders/sun.c Sun Aug 20 12:21:03 2017 +0200 -+++ b/coders/sun.c Sun Aug 20 14:29:48 2017 -0500 -@@ -498,6 +498,12 @@ - if (sun_info.depth < 8) - image->depth=sun_info.depth; - -+ if (image_info->ping) -+ { -+ CloseBlob(image); -+ return(image); -+ } -+ - /* - Compute bytes per line and bytes per image for an unencoded - image. -@@ -522,15 +528,37 @@ - if (bytes_per_image > sun_info.length) - ThrowReaderException(CorruptImageError,ImproperImageHeader,image); - -- if (image_info->ping) -- { -- CloseBlob(image); -- return(image); -- } - if (sun_info.type == RT_ENCODED) - sun_data_length=(size_t) sun_info.length; - else - sun_data_length=bytes_per_image; -+ -+ /* -+ Verify that data length claimed by header is supported by file size -+ */ -+ if (sun_info.type == RT_ENCODED) -+ { -+ if (sun_data_length < bytes_per_image/255U) -+ { -+ ThrowReaderException(CorruptImageError,ImproperImageHeader,image); -+ } -+ } -+ if (BlobIsSeekable(image)) -+ { -+ const magick_off_t file_size = GetBlobSize(image); -+ const magick_off_t current_offset = TellBlob(image); -+ if ((file_size > 0) && -+ (current_offset > 0) && -+ (file_size > current_offset)) -+ { -+ const magick_off_t remaining = file_size-current_offset; -+ if (remaining < (magick_off_t) sun_data_length) -+ { -+ ThrowReaderException(CorruptImageError,UnexpectedEndOfFile,image); -+ } -+ } -+ } -+ - sun_data=MagickAllocateMemory(unsigned char *,sun_data_length); - if (sun_data == (unsigned char *) NULL) - ThrowReaderException(ResourceLimitError,MemoryAllocationFailed,image); - diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch deleted file mode 100644 index 8e1166ba7a..0000000000 --- a/gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch +++ /dev/null @@ -1,210 +0,0 @@ -http://hg.code.sf.net/p/graphicsmagick/code/rev/358608a46f0a -http://www.openwall.com/lists/oss-security/2017/09/22/2 - -Some changes were made to make the patch apply. - -Notably, the DestroyJNG() function in the upstream diff has been replaced by -its equivalent, a series of calls to MagickFreeMemory(), DestroyImageInfo(), -and DestroyImage(). See -http://hg.code.sf.net/p/graphicsmagick/code/rev/d445af60a8d5. - -# HG changeset patch -# User Glenn Randers-Pehrson <glennrp+bmo@gmail.com> -# Date 1504014487 14400 -# Node ID 358608a46f0a9c55e9bb8b37d09bf1ac9bc87f06 -# Parent 38c362f0ae5e7a914c3fe822284c6953f8e6eee2 -Fix Issue 439 - -diff -ru a/coders/png.c b/coders/png.c ---- a/coders/png.c 1969-12-31 19:00:00.000000000 -0500 -+++ b/coders/png.c 2017-09-30 08:20:16.218944991 -0400 -@@ -1176,15 +1176,15 @@ - /* allocate space */ - if (length == 0) - { -- (void) ThrowException2(&image->exception,CoderWarning, -- "invalid profile length",(char *) NULL); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "invalid profile length"); - return (MagickFail); - } - info=MagickAllocateMemory(unsigned char *,length); - if (info == (unsigned char *) NULL) - { -- (void) ThrowException2(&image->exception,CoderWarning, -- "unable to copy profile",(char *) NULL); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "Unable to copy profile"); - return (MagickFail); - } - /* copy profile, skipping white space and column 1 "=" signs */ -@@ -1197,8 +1197,8 @@ - if (*sp == '\0') - { - MagickFreeMemory(info); -- (void) ThrowException2(&image->exception,CoderWarning, -- "ran out of profile data",(char *) NULL); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "ran out of profile data"); - return (MagickFail); - } - sp++; -@@ -1234,8 +1234,9 @@ - if(SetImageProfile(image,profile_name,info,length) == MagickFail) - { - MagickFreeMemory(info); -- (void) ThrowException(&image->exception,ResourceLimitError, -- MemoryAllocationFailed,"unable to copy profile"); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ "unable to copy profile"); -+ return MagickFail; - } - MagickFreeMemory(info); - return MagickTrue; -@@ -3285,7 +3286,6 @@ - if (status == MagickFalse) - { - DestroyJNGInfo(color_image_info,alpha_image_info); -- DestroyImage(alpha_image); - (void) LogMagickEvent(CoderEvent,GetMagickModule(), - " could not allocate alpha_image blob"); - return ((Image *)NULL); -@@ -3534,7 +3534,7 @@ - CloseBlob(color_image); - if (logging) - (void) LogMagickEvent(CoderEvent,GetMagickModule(), -- " Reading jng_image from color_blob."); -+ " Reading jng_image from color_blob."); - - FormatString(color_image_info->filename,"%.1024s",color_image->filename); - -@@ -3558,13 +3558,18 @@ - - if (logging) - (void) LogMagickEvent(CoderEvent,GetMagickModule(), -- " Copying jng_image pixels to main image."); -+ " Copying jng_image pixels to main image."); - image->rows=jng_height; - image->columns=jng_width; - length=image->columns*sizeof(PixelPacket); -+ if ((jng_height == 0 || jng_width == 0) && logging) -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " jng_width=%lu jng_height=%lu", -+ (unsigned long)jng_width,(unsigned long)jng_height); - for (y=0; y < (long) image->rows; y++) - { -- s=AcquireImagePixels(jng_image,0,y,image->columns,1,&image->exception); -+ s=AcquireImagePixels(jng_image,0,y,image->columns,1, -+ &image->exception); - q=SetImagePixels(image,0,y,image->columns,1); - (void) memcpy(q,s,length); - if (!SyncImagePixels(image)) -@@ -3589,45 +3594,79 @@ - CloseBlob(alpha_image); - if (logging) - (void) LogMagickEvent(CoderEvent,GetMagickModule(), -- " Reading opacity from alpha_blob."); -+ " Reading opacity from alpha_blob."); - - FormatString(alpha_image_info->filename,"%.1024s", - alpha_image->filename); - - jng_image=ReadImage(alpha_image_info,exception); - -- for (y=0; y < (long) image->rows; y++) -+ if (jng_image == (Image *)NULL) - { -- s=AcquireImagePixels(jng_image,0,y,image->columns,1, -- &image->exception); -- if (image->matte) -- { -- q=SetImagePixels(image,0,y,image->columns,1); -- for (x=(long) image->columns; x > 0; x--,q++,s++) -- q->opacity=(Quantum) MaxRGB-s->red; -- } -- else -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " jng_image is NULL."); -+ if (color_image_info) -+ DestroyImageInfo(color_image_info); -+ if (alpha_image_info) -+ DestroyImageInfo(alpha_image_info); -+ if (color_image) -+ DestroyImage(color_image); -+ if (alpha_image) -+ DestroyImage(alpha_image); -+ } -+ else -+ { -+ -+ if (logging) - { -- q=SetImagePixels(image,0,y,image->columns,1); -- for (x=(long) image->columns; x > 0; x--,q++,s++) -- { -- q->opacity=(Quantum) MaxRGB-s->red; -- if (q->opacity != OpaqueOpacity) -- image->matte=MagickTrue; -- } -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " Read jng_image."); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " jng_image->width=%lu, jng_image->height=%lu", -+ (unsigned long)jng_width,(unsigned long)jng_height); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " image->rows=%lu, image->columns=%lu", -+ (unsigned long)image->rows, -+ (unsigned long)image->columns); - } -- if (!SyncImagePixels(image)) -- break; -- } -- (void) LiberateUniqueFileResource(alpha_image->filename); -- DestroyImage(alpha_image); -- alpha_image = (Image *)NULL; -- DestroyImageInfo(alpha_image_info); -- alpha_image_info = (ImageInfo *)NULL; -- (void) LogMagickEvent(CoderEvent,GetMagickModule(), -- " Destroy the JNG image"); -- DestroyImage(jng_image); -- jng_image = (Image *)NULL; -+ -+ for (y=0; y < (long) image->rows; y++) -+ { -+ s=AcquireImagePixels(jng_image,0,y,image->columns,1, -+ &image->exception); -+ if (image->matte) -+ { -+ q=SetImagePixels(image,0,y,image->columns,1); -+ for (x=(long) image->columns; x > 0; x--,q++,s++) -+ q->opacity=(Quantum) MaxRGB-s->red; -+ } -+ else -+ { -+ q=SetImagePixels(image,0,y,image->columns,1); -+ for (x=(long) image->columns; x > 0; x--,q++,s++) -+ { -+ q->opacity=(Quantum) MaxRGB-s->red; -+ if (q->opacity != OpaqueOpacity) -+ image->matte=MagickTrue; -+ } -+ } -+ if (!SyncImagePixels(image)) -+ break; -+ } -+ (void) LiberateUniqueFileResource(alpha_image->filename); -+ if (color_image_info) -+ DestroyImageInfo(color_image_info); -+ if (alpha_image_info) -+ DestroyImageInfo(alpha_image_info); -+ if (color_image) -+ DestroyImage(color_image); -+ if (alpha_image) -+ DestroyImage(alpha_image); -+ (void) LogMagickEvent(CoderEvent,GetMagickModule(), -+ " Destroy the JNG image"); -+ DestroyImage(jng_image); -+ jng_image = (Image *)NULL; -+ } - } - } diff --git a/gnu/packages/patches/jemalloc-arm-address-bits.patch b/gnu/packages/patches/jemalloc-arm-address-bits.patch new file mode 100644 index 0000000000..f2ef24c25a --- /dev/null +++ b/gnu/packages/patches/jemalloc-arm-address-bits.patch @@ -0,0 +1,39 @@ +From 8cfc9dec37b312a2686f602bbcdd102ca07cca99 Mon Sep 17 00:00:00 2001 +From: David Goldblatt <davidgoldblatt@fb.com> +Date: Fri, 29 Sep 2017 13:54:08 -0700 +Subject: [PATCH] ARM: Don't extend bit LG_VADDR to compute high address bits. + +In userspace ARM on Linux, zero-ing the high bits is the correct way to do this. +This doesn't fix the fact that we currently set LG_VADDR to 48 on ARM, when in +fact larger virtual address sizes are coming soon. We'll cross that bridge when +we come to it. +--- + include/jemalloc/internal/rtree.h | 12 ++++++++++++ + 1 file changed, 12 insertions(+) + +diff --git a/include/jemalloc/internal/rtree.h b/include/jemalloc/internal/rtree.h +index b5d4db39..4563db23 100644 +--- a/include/jemalloc/internal/rtree.h ++++ b/include/jemalloc/internal/rtree.h +@@ -178,9 +178,21 @@ rtree_leaf_elm_bits_read(tsdn_t *tsdn, rtree_t *rtree, rtree_leaf_elm_t *elm, + + JEMALLOC_ALWAYS_INLINE extent_t * + rtree_leaf_elm_bits_extent_get(uintptr_t bits) { ++# ifdef __aarch64__ ++ /* ++ * aarch64 doesn't sign extend the highest virtual address bit to set ++ * the higher ones. Instead, the high bits gets zeroed. ++ */ ++ uintptr_t high_bit_mask = ((uintptr_t)1 << LG_VADDR) - 1; ++ /* Mask off the slab bit. */ ++ uintptr_t low_bit_mask = ~(uintptr_t)1; ++ uintptr_t mask = high_bit_mask & low_bit_mask; ++ return (extent_t *)(bits & mask); ++# else + /* Restore sign-extended high bits, mask slab bit. */ + return (extent_t *)((uintptr_t)((intptr_t)(bits << RTREE_NHIB) >> + RTREE_NHIB) & ~((uintptr_t)0x1)); ++# endif + } + + JEMALLOC_ALWAYS_INLINE szind_t diff --git a/gnu/packages/patches/libvdpau-va-gl-unbundle.patch b/gnu/packages/patches/libvdpau-va-gl-unbundle.patch new file mode 100644 index 0000000000..b15e15c2a3 --- /dev/null +++ b/gnu/packages/patches/libvdpau-va-gl-unbundle.patch @@ -0,0 +1,35 @@ +From 18e3ff648356cf06a39372aa4a4bbf2732d9d0f4 Mon Sep 17 00:00:00 2001 +From: Efraim Flashner <efraim@flashner.co.il> +Date: Tue, 12 Dec 2017 21:36:44 +0200 +Subject: [PATCH] don't use bundled libvdpau headers + +--- + CMakeLists.txt | 3 ++- + 1 file changed, 2 insertions(+), 1 deletion(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 0484179..e950707 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -9,16 +9,17 @@ find_package(PkgConfig REQUIRED) + find_package(X11 REQUIRED) + pkg_check_modules(LIBVA libva-x11 REQUIRED) + pkg_check_modules(LIBGL gl REQUIRED) ++pkg_check_modules(LIBVDPAU vdpau REQUIRED) + + set(DRIVER_NAME "vdpau_va_gl" CACHE STRING "driver name") + set(LIB_SUFFIX "" CACHE STRING "library path suffix (if needed)") + set(LIB_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}/vdpau" CACHE PATH "library installation path") + + include_directories ( +- 3rdparty + ${X11_INCLUDE_DIRS} + ${LIBVA_INCLUDE_DIRS} + ${LIBGL_INCLUDE_DIRS} ++ ${LIBVDPAU_INCLUDE_DIRS} + ${GENERATED_INCLUDE_DIRS} + ${CMAKE_BINARY_DIR} + ) +-- +2.15.1 + diff --git a/gnu/packages/patches/picprog-non-intel-support.patch b/gnu/packages/patches/picprog-non-intel-support.patch new file mode 100644 index 0000000000..8908207011 --- /dev/null +++ b/gnu/packages/patches/picprog-non-intel-support.patch @@ -0,0 +1,74 @@ +https://sources.debian.org/data/main/p/picprog/1.9.1-3/debian/patches/20_iopl.patch + +Description: Avoid some functions in some architectures + Upstream uses iopl() function and other architecture-dependent + codes. This patch adds building switches to avoid them in + some architectures. +Author: Koichi Akabe <vbkaisetsu@gmail.com> +Last-Update: 2011-11-30 + +--- picprog-1.9.1.orig/picport.cc ++++ picprog-1.9.1/picport.cc +@@ -38,7 +38,12 @@ + #include <ctime> + + #include <sys/ioctl.h> +-#include <sys/io.h> ++ ++#if defined(__i386__) || defined(__x86_64__) ++ #include <sys/io.h> ++ #define HAVE_IOPL ++#endif ++ + #include <fcntl.h> + #include <sys/time.h> + #include <unistd.h> +@@ -160,8 +165,12 @@ + // Not root. Cannot use realtime scheduling. + use_nanosleep = 0; + } ++#ifdef HAVE_IOPL + if (iopl (3)) + disable_interrupts = 0; ++#else ++ disable_interrupts = 0; ++#endif + + #ifdef CPU_SETSIZE + // When computing the delay loops, we do not want the cpu's to change. +@@ -403,13 +412,17 @@ + { + struct timeval tv1, tv2; + gettimeofday (&tv1, 0); ++#if defined(__i386__) or defined(__x86_64__) + if (tsc_1000ns > 1 && disable_interrupts) + asm volatile("pushf; cli"); ++#endif + set_clock_data (1, b); // set data, clock up + delay (cable_delay); + set_clock_data (0, b); // clock down ++#if defined(__i386__) or defined(__x86_64__) + if (tsc_1000ns > 1 && disable_interrupts) + asm volatile("popf"); ++#endif + gettimeofday (&tv2, 0); + + // We may have spent a long time in an interrupt or in another task +@@ -428,13 +441,17 @@ + { + struct timeval tv1, tv2; + gettimeofday (&tv1, 0); ++#if defined(__i386__) or defined(__x86_64__) + if (tsc_1000ns > 1 && disable_interrupts) + asm volatile("pushf; cli"); ++#endif + set_clock_data (1, 1); // clock up + delay (cable_delay); + set_clock_data (0, 1); // set data up, clock down ++#if defined(__i386__) or defined(__x86_64__) + if (tsc_1000ns > 1 && disable_interrupts) + asm volatile("popf"); ++#endif + gettimeofday (&tv2, 0); + + // We may have spent a long time in an interrupt or in another task diff --git a/gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch b/gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch new file mode 100644 index 0000000000..90328cc0eb --- /dev/null +++ b/gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch @@ -0,0 +1,25 @@ +This patch stops a test sometimes failing because of non-determinism. See +https://github.com/scikit-learn/scikit-learn/pull/9542 + +From ff9f6db6e8b59c2b3528c8137ed4054f57c1d7c4 Mon Sep 17 00:00:00 2001 +From: Hanmin Qin <qinhanmin2005@sina.com> +Date: Sun, 13 Aug 2017 22:13:49 +0800 +Subject: [PATCH] add random_state + +--- + sklearn/tests/test_kernel_ridge.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/sklearn/tests/test_kernel_ridge.py b/sklearn/tests/test_kernel_ridge.py +index 4750a096ac6..979875870b6 100644 +--- a/sklearn/tests/test_kernel_ridge.py ++++ b/sklearn/tests/test_kernel_ridge.py +@@ -10,7 +10,7 @@ + from sklearn.utils.testing import assert_array_almost_equal + + +-X, y = make_regression(n_features=10) ++X, y = make_regression(n_features=10, random_state=0) + Xcsr = sp.csr_matrix(X) + Xcsc = sp.csc_matrix(X) + Y = np.array([y, y]).T diff --git a/gnu/packages/patches/qemu-CVE-2017-15118.patch b/gnu/packages/patches/qemu-CVE-2017-15118.patch deleted file mode 100644 index d427317be9..0000000000 --- a/gnu/packages/patches/qemu-CVE-2017-15118.patch +++ /dev/null @@ -1,58 +0,0 @@ -Fix CVE-2017-15118: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-15118 -https://bugzilla.redhat.com/show_bug.cgi?id=1516922 - -Patch copied from upstream source repository: - -https://git.qemu.org/?p=qemu.git;a=commitdiff;h=51ae4f8455c9e32c54770c4ebc25bf86a8128183 - -From 51ae4f8455c9e32c54770c4ebc25bf86a8128183 Mon Sep 17 00:00:00 2001 -From: Eric Blake <eblake@redhat.com> -Date: Wed, 22 Nov 2017 15:07:22 -0600 -Subject: [PATCH] nbd/server: CVE-2017-15118 Stack smash on large export name - -Introduced in commit f37708f6b8 (2.10). The NBD spec says a client -can request export names up to 4096 bytes in length, even though -they should not expect success on names longer than 256. However, -qemu hard-codes the limit of 256, and fails to filter out a client -that probes for a longer name; the result is a stack smash that can -potentially give an attacker arbitrary control over the qemu -process. - -The smash can be easily demonstrated with this client: -$ qemu-io f raw nbd://localhost:10809/$(printf %3000d 1 | tr ' ' a) - -If the qemu NBD server binary (whether the standalone qemu-nbd, or -the builtin server of QMP nbd-server-start) was compiled with --fstack-protector-strong, the ability to exploit the stack smash -into arbitrary execution is a lot more difficult (but still -theoretically possible to a determined attacker, perhaps in -combination with other CVEs). Still, crashing a running qemu (and -losing the VM) is bad enough, even if the attacker did not obtain -full execution control. - -CC: qemu-stable@nongnu.org -Signed-off-by: Eric Blake <eblake@redhat.com> ---- - nbd/server.c | 4 ++++ - 1 file changed, 4 insertions(+) - -diff --git a/nbd/server.c b/nbd/server.c -index a81801e3bc..92c0fdd03b 100644 ---- a/nbd/server.c -+++ b/nbd/server.c -@@ -386,6 +386,10 @@ static int nbd_negotiate_handle_info(NBDClient *client, uint32_t length, - msg = "name length is incorrect"; - goto invalid; - } -+ if (namelen >= sizeof(name)) { -+ msg = "name too long for qemu"; -+ goto invalid; -+ } - if (nbd_read(client->ioc, name, namelen, errp) < 0) { - return -EIO; - } --- -2.15.0 - diff --git a/gnu/packages/patches/qemu-CVE-2017-15119.patch b/gnu/packages/patches/qemu-CVE-2017-15119.patch deleted file mode 100644 index 6265ecf8d6..0000000000 --- a/gnu/packages/patches/qemu-CVE-2017-15119.patch +++ /dev/null @@ -1,68 +0,0 @@ -Fix CVE-2017-15119: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-15119 -https://bugzilla.redhat.com/show_bug.cgi?id=1516925 - -Patch copied from upstream source repository: - -https://git.qemu.org/?p=qemu.git;a=commitdiff;h=fdad35ef6c5839d50dfc14073364ac893afebc30 - -From fdad35ef6c5839d50dfc14073364ac893afebc30 Mon Sep 17 00:00:00 2001 -From: Eric Blake <eblake@redhat.com> -Date: Wed, 22 Nov 2017 16:25:16 -0600 -Subject: [PATCH] nbd/server: CVE-2017-15119 Reject options larger than 32M - -The NBD spec gives us permission to abruptly disconnect on clients -that send outrageously large option requests, rather than having -to spend the time reading to the end of the option. No real -option request requires that much data anyways; and meanwhile, we -already have the practice of abruptly dropping the connection on -any client that sends NBD_CMD_WRITE with a payload larger than 32M. - -For comparison, nbdkit drops the connection on any request with -more than 4096 bytes; however, that limit is probably too low -(as the NBD spec states an export name can theoretically be up -to 4096 bytes, which means a valid NBD_OPT_INFO could be even -longer) - even if qemu doesn't permit exports longer than 256 -bytes. - -It could be argued that a malicious client trying to get us to -read nearly 4G of data on a bad request is a form of denial of -service. In particular, if the server requires TLS, but a client -that does not know the TLS credentials sends any option (other -than NBD_OPT_STARTTLS or NBD_OPT_EXPORT_NAME) with a stated -payload of nearly 4G, then the server was keeping the connection -alive trying to read all the payload, tying up resources that it -would rather be spending on a client that can get past the TLS -handshake. Hence, this warranted a CVE. - -Present since at least 2.5 when handling known options, and made -worse in 2.6 when fixing support for NBD_FLAG_C_FIXED_NEWSTYLE -to handle unknown options. - -CC: qemu-stable@nongnu.org -Signed-off-by: Eric Blake <eblake@redhat.com> ---- - nbd/server.c | 6 ++++++ - 1 file changed, 6 insertions(+) - -diff --git a/nbd/server.c b/nbd/server.c -index 7d6801b427..a81801e3bc 100644 ---- a/nbd/server.c -+++ b/nbd/server.c -@@ -673,6 +673,12 @@ static int nbd_negotiate_options(NBDClient *client, uint16_t myflags, - } - length = be32_to_cpu(length); - -+ if (length > NBD_MAX_BUFFER_SIZE) { -+ error_setg(errp, "len (%" PRIu32" ) is larger than max len (%u)", -+ length, NBD_MAX_BUFFER_SIZE); -+ return -EINVAL; -+ } -+ - trace_nbd_negotiate_options_check_option(option, - nbd_opt_lookup(option)); - if (client->tlscreds && --- -2.15.0 - diff --git a/gnu/packages/patches/qemu-CVE-2017-15268.patch b/gnu/packages/patches/qemu-CVE-2017-15268.patch deleted file mode 100644 index 8238c3059f..0000000000 --- a/gnu/packages/patches/qemu-CVE-2017-15268.patch +++ /dev/null @@ -1,62 +0,0 @@ -Fix CVE-2017-15268: - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-15268 - -Patch copied from upstream source repository: - -https://git.qemu.org/?p=qemu.git;a=commitdiff;h=a7b20a8efa28e5f22c26c06cd06c2f12bc863493 - -From a7b20a8efa28e5f22c26c06cd06c2f12bc863493 Mon Sep 17 00:00:00 2001 -From: "Daniel P. Berrange" <berrange@redhat.com> -Date: Mon, 9 Oct 2017 14:43:42 +0100 -Subject: [PATCH] io: monitor encoutput buffer size from websocket GSource - -The websocket GSource is monitoring the size of the rawoutput -buffer to determine if the channel can accepts more writes. -The rawoutput buffer, however, is merely a temporary staging -buffer before data is copied into the encoutput buffer. Thus -its size will always be zero when the GSource runs. - -This flaw causes the encoutput buffer to grow without bound -if the other end of the underlying data channel doesn't -read data being sent. This can be seen with VNC if a client -is on a slow WAN link and the guest OS is sending many screen -updates. A malicious VNC client can act like it is on a slow -link by playing a video in the guest and then reading data -very slowly, causing QEMU host memory to expand arbitrarily. - -This issue is assigned CVE-2017-15268, publically reported in - - https://bugs.launchpad.net/qemu/+bug/1718964 - -Reviewed-by: Eric Blake <eblake@redhat.com> -Signed-off-by: Daniel P. Berrange <berrange@redhat.com> ---- - io/channel-websock.c | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/io/channel-websock.c b/io/channel-websock.c -index d1d471f86e..04bcc059cd 100644 ---- a/io/channel-websock.c -+++ b/io/channel-websock.c -@@ -28,7 +28,7 @@ - #include <time.h> - - --/* Max amount to allow in rawinput/rawoutput buffers */ -+/* Max amount to allow in rawinput/encoutput buffers */ - #define QIO_CHANNEL_WEBSOCK_MAX_BUFFER 8192 - - #define QIO_CHANNEL_WEBSOCK_CLIENT_KEY_LEN 24 -@@ -1208,7 +1208,7 @@ qio_channel_websock_source_check(GSource *source) - if (wsource->wioc->rawinput.offset || wsource->wioc->io_eof) { - cond |= G_IO_IN; - } -- if (wsource->wioc->rawoutput.offset < QIO_CHANNEL_WEBSOCK_MAX_BUFFER) { -+ if (wsource->wioc->encoutput.offset < QIO_CHANNEL_WEBSOCK_MAX_BUFFER) { - cond |= G_IO_OUT; - } - --- -2.15.0 - diff --git a/gnu/packages/patches/rsync-CVE-2017-16548.patch b/gnu/packages/patches/rsync-CVE-2017-16548.patch new file mode 100644 index 0000000000..52a75ea241 --- /dev/null +++ b/gnu/packages/patches/rsync-CVE-2017-16548.patch @@ -0,0 +1,31 @@ +https://bugzilla.samba.org/show_bug.cgi?id=13112 +https://git.samba.org/rsync.git/?p=rsync.git;a=patch;h=47a63d90e71d3e19e0e96052bb8c6b9cb140ecc1 + +From 47a63d90e71d3e19e0e96052bb8c6b9cb140ecc1 Mon Sep 17 00:00:00 2001 +From: Wayne Davison <wayned@samba.org> +Date: Sun, 5 Nov 2017 11:33:15 -0800 +Subject: [PATCH] Enforce trailing \0 when receiving xattr name values. Fixes + bug 13112. + +--- + xattrs.c | 4 ++++ + 1 file changed, 4 insertions(+) + +diff --git a/xattrs.c b/xattrs.c +index 68305d7..4867e6f 100644 +--- a/xattrs.c ++++ b/xattrs.c +@@ -824,6 +824,10 @@ void receive_xattr(int f, struct file_struct *file) + out_of_memory("receive_xattr"); + name = ptr + dget_len + extra_len; + read_buf(f, name, name_len); ++ if (name_len < 1 || name[name_len-1] != '\0') { ++ rprintf(FERROR, "Invalid xattr name received (missing trailing \\0).\n"); ++ exit_cleanup(RERR_FILEIO); ++ } + if (dget_len == datum_len) + read_buf(f, ptr, dget_len); + else { +-- +1.9.1 + diff --git a/gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch b/gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch new file mode 100644 index 0000000000..74bac0fc33 --- /dev/null +++ b/gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch @@ -0,0 +1,42 @@ +https://git.samba.org/?p=rsync.git;a=patch;h=f5e8a17e093065fb20fea00a29540fe2c7896441 +minor edits were made to get the patch to apply + +From f5e8a17e093065fb20fea00a29540fe2c7896441 Mon Sep 17 00:00:00 2001 +From: Wayne Davison <wayned@samba.org> +Date: Sun, 3 Dec 2017 15:49:56 -0800 +Subject: [PATCH] Fix issue with earlier path-check (fixes "make check") and + make a BOOL more explicit. + +--- + checksum.c | 2 +- + receiver.c | 10 +++++----- + 2 files changed, 6 insertions(+), 6 deletions(-) + +diff --git a/receiver.c b/receiver.c +index 9c46242..75cb00d 100644 +--- a/receiver.c ++++ b/receiver.c +@@ -574,15 +574,15 @@ int recv_files(int f_in, int f_out, char *local_name) + file = dir_flist->files[cur_flist->parent_ndx]; + fname = local_name ? local_name : f_name(file, fbuf); + +- if (daemon_filter_list.head +- && check_filter(&daemon_filter_list, FLOG, fname, 0) < 0) { ++ if (DEBUG_GTE(RECV, 1)) ++ rprintf(FINFO, "recv_files(%s)\n", fname); ++ ++ if (daemon_filter_list.head && (*fname != '.' || fname[1] != '\0') ++ && check_filter(&daemon_filter_list, FLOG, fname, 0) < 0) { + rprintf(FERROR, "attempt to hack rsync failed.\n"); + exit_cleanup(RERR_PROTOCOL); + } + +- if (DEBUG_GTE(RECV, 1)) +- rprintf(FINFO, "recv_files(%s)\n", fname); +- + #ifdef SUPPORT_XATTRS + if (preserve_xattrs && iflags & ITEM_REPORT_XATTR && do_xfers + && !(want_xattr_optim && BITS_SET(iflags, ITEM_XNAME_FOLLOWS|ITEM_LOCAL_CHANGE))) +-- +1.9.1 + diff --git a/gnu/packages/patches/rsync-CVE-2017-17433.patch b/gnu/packages/patches/rsync-CVE-2017-17433.patch new file mode 100644 index 0000000000..84e4067509 --- /dev/null +++ b/gnu/packages/patches/rsync-CVE-2017-17433.patch @@ -0,0 +1,45 @@ +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17433 +https://git.samba.org/?p=rsync.git;a=patch;h=3e06d40029cfdce9d0f73d87cfd4edaf54be9c51 + +From 3e06d40029cfdce9d0f73d87cfd4edaf54be9c51 Mon Sep 17 00:00:00 2001 +From: Jeriko One <jeriko.one@gmx.us> +Date: Thu, 2 Nov 2017 23:44:19 -0700 +Subject: [PATCH] Check fname in recv_files sooner. + +--- + receiver.c | 12 ++++++------ + 1 file changed, 6 insertions(+), 6 deletions(-) + +diff --git a/receiver.c b/receiver.c +index baae3a9..9fdafa1 100644 +--- a/receiver.c ++++ b/receiver.c +@@ -574,6 +574,12 @@ int recv_files(int f_in, int f_out, char *local_name) + file = dir_flist->files[cur_flist->parent_ndx]; + fname = local_name ? local_name : f_name(file, fbuf); + ++ if (daemon_filter_list.head ++ && check_filter(&daemon_filter_list, FLOG, fname, 0) < 0) { ++ rprintf(FERROR, "attempt to hack rsync failed.\n"); ++ exit_cleanup(RERR_PROTOCOL); ++ } ++ + if (DEBUG_GTE(RECV, 1)) + rprintf(FINFO, "recv_files(%s)\n", fname); + +@@ -645,12 +651,6 @@ int recv_files(int f_in, int f_out, char *local_name) + + cleanup_got_literal = 0; + +- if (daemon_filter_list.head +- && check_filter(&daemon_filter_list, FLOG, fname, 0) < 0) { +- rprintf(FERROR, "attempt to hack rsync failed.\n"); +- exit_cleanup(RERR_PROTOCOL); +- } +- + if (read_batch) { + int wanted = redoing + ? we_want_redo(ndx) +-- +1.9.1 + diff --git a/gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch b/gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch new file mode 100644 index 0000000000..0d9298743d --- /dev/null +++ b/gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch @@ -0,0 +1,28 @@ +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17434 +https://git.samba.org/?p=rsync.git;a=patch;h=5509597decdbd7b91994210f700329d8a35e70a1 + +From 5509597decdbd7b91994210f700329d8a35e70a1 Mon Sep 17 00:00:00 2001 +From: Jeriko One <jeriko.one@gmx.us> +Date: Thu, 16 Nov 2017 17:26:03 -0800 +Subject: [PATCH] Check daemon filter against fnamecmp in recv_files(). + +--- + receiver.c | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/receiver.c b/receiver.c +index 9fdafa1..9c46242 100644 +--- a/receiver.c ++++ b/receiver.c +@@ -722,7 +722,7 @@ int recv_files(int f_in, int f_out, char *local_name) + break; + } + if (!fnamecmp || (daemon_filter_list.head +- && check_filter(&daemon_filter_list, FLOG, fname, 0) < 0)) { ++ && check_filter(&daemon_filter_list, FLOG, fnamecmp, 0) < 0)) { + fnamecmp = fname; + fnamecmp_type = FNAMECMP_FNAME; + } +-- +1.9.1 + diff --git a/gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch b/gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch new file mode 100644 index 0000000000..fad19d01fb --- /dev/null +++ b/gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch @@ -0,0 +1,39 @@ +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-17434 +https://git.samba.org/?p=rsync.git;a=patch;h=70aeb5fddd1b2f8e143276f8d5a085db16c593b9 + +From 70aeb5fddd1b2f8e143276f8d5a085db16c593b9 Mon Sep 17 00:00:00 2001 +From: Jeriko One <jeriko.one@gmx.us> +Date: Thu, 16 Nov 2017 17:05:42 -0800 +Subject: [PATCH] Sanitize xname in read_ndx_and_attrs. + +--- + rsync.c | 6 ++++++ + 1 file changed, 6 insertions(+) + +diff --git a/rsync.c b/rsync.c +index b82e598..a0945ba 100644 +--- a/rsync.c ++++ b/rsync.c +@@ -49,6 +49,7 @@ extern int flist_eof; + extern int file_old_total; + extern int keep_dirlinks; + extern int make_backups; ++extern int sanitize_paths; + extern struct file_list *cur_flist, *first_flist, *dir_flist; + extern struct chmod_mode_struct *daemon_chmod_modes; + #ifdef ICONV_OPTION +@@ -396,6 +397,11 @@ int read_ndx_and_attrs(int f_in, int f_out, int *iflag_ptr, uchar *type_ptr, + if (iflags & ITEM_XNAME_FOLLOWS) { + if ((len = read_vstring(f_in, buf, MAXPATHLEN)) < 0) + exit_cleanup(RERR_PROTOCOL); ++ ++ if (sanitize_paths) { ++ sanitize_path(buf, buf, "", 0, SP_DEFAULT); ++ len = strlen(buf); ++ } + } else { + *buf = '\0'; + len = -1; +-- +1.9.1 + diff --git a/gnu/packages/patches/t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch b/gnu/packages/patches/t1lib-CVE-2011-1552+.patch index aaa31f7b93..aaa31f7b93 100644 --- a/gnu/packages/patches/t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch +++ b/gnu/packages/patches/t1lib-CVE-2011-1552+.patch diff --git a/gnu/packages/perl-check.scm b/gnu/packages/perl-check.scm index 4ed633efef..b1d1f08150 100644 --- a/gnu/packages/perl-check.scm +++ b/gnu/packages/perl-check.scm @@ -10,6 +10,7 @@ ;;; Copyright © 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017 Christopher Baines <mail@cbaines.net> ;;; Copyright © 2017 Petter <petter@mykolab.ch> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -637,7 +638,7 @@ the behavior, just the input and the output.") (define-public perl-test-mocktime (package (name "perl-test-mocktime") - (version "0.13") + (version "0.15") (source (origin (method url-fetch) @@ -645,7 +646,9 @@ the behavior, just the input and the output.") "Test-MockTime-" version ".tar.gz")) (sha256 (base32 - "0yrqmjg33akannwz2f99rfm7dvvxpzsdj23lsvlvfi4qslrlqfvw")))) + "0j6cxmkj52i5xkwg8dg6klm0dh386fzc5v80n5nbdalpvq0h48c8")))) + (propagated-inputs + `(("perl-time-piece" ,perl-time-piece))) (build-system perl-build-system) (home-page "http://search.cpan.org/dist/Test-MockTime/") (synopsis "Replaces actual time with simulated time") @@ -659,7 +662,7 @@ to gmtime,time or localtime.") (define-public perl-test-most (package (name "perl-test-most") - (version "0.34") + (version "0.35") (source (origin (method url-fetch) @@ -667,7 +670,7 @@ to gmtime,time or localtime.") "Test-Most-" version ".tar.gz")) (sha256 (base32 - "0i72aih3pakm8gh73wx1n4dwq8lbx6dvxhla46gsapszws6hr0n2")))) + "0zv5dyzq55r28plffibcr7wd00abap0h2zh4s4p8snaiszsad5wq")))) (build-system perl-build-system) (propagated-inputs `(("perl-test-differences" ,perl-test-differences) @@ -809,15 +812,15 @@ as flexible as possible to the tester.") (define-public perl-test-pod (package (name "perl-test-pod") - (version "1.48") + (version "1.51") (source (origin (method url-fetch) - (uri (string-append "mirror://cpan/authors/id/D/DW/DWHEELER/" + (uri (string-append "mirror://cpan/authors/id/E/ET/ETHER/" "Test-Pod-" version ".tar.gz")) (sha256 (base32 - "1hmwwhabyng4jrnll926b4ab73r40w3pfchlrvs0yx6kh6kwwy14")))) + "1yvy5mc4j3s2h4aizryvark2nm58g2c6zhw9mlx9wmsavz7d78f1")))) (build-system perl-build-system) (native-inputs `(("perl-module-build" ,perl-module-build))) (home-page "http://search.cpan.org/dist/Test-Pod/") @@ -850,7 +853,7 @@ checks for pod coverage of all appropriate files.") (define-public perl-test-requires (package (name "perl-test-requires") - (version "0.08") + (version "0.10") (source (origin (method url-fetch) @@ -858,7 +861,7 @@ checks for pod coverage of all appropriate files.") "Test-Requires-" version ".tar.gz")) (sha256 (base32 - "08c29m0dn34384mmmpqqlbb899zpbkkc01c2lsp31mch1frv9cg7")))) + "1d9f481lj12cw1ciil46xq9nq16p6a90nm7yrsalpf8asn8s6s17")))) (build-system perl-build-system) (home-page "http://search.cpan.org/dist/Test-Requires/") (synopsis "Checks to see if the module can be loaded") @@ -913,14 +916,14 @@ makes fork(2) safe to use in test cases.") (define-public perl-test-simple (package (name "perl-test-simple") - (version "1.302078") + (version "1.302120") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/E/EX/EXODIST/" "Test-Simple-" version ".tar.gz")) (sha256 (base32 - "05acl24kmz3dgr2nayy162yaf0kz92h1j5vkiavyv6mdh2lz6ixb")))) + "0v1l0hfza9zlw3qj5l2mrzljy1sk02h3yqcb4kixdb2d5l4n08y8")))) (build-system perl-build-system) (synopsis "Basic utilities for writing tests") (description @@ -979,7 +982,7 @@ a minimum of effort.") (define-public perl-test-trap (package (name "perl-test-trap") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) @@ -987,7 +990,7 @@ a minimum of effort.") "Test-Trap-v" version ".tar.gz")) (sha256 (base32 - "0jq54pkm4s61gk8gzxglix1ff9s0m9vi6bpfv7f63lb9qq4r76rr")))) + "1676gqjyk0zig3yyqv053y5j1pajp2af08ffmgx94n414whbhm5c")))) (build-system perl-build-system) (native-inputs `(("perl-module-build" ,perl-module-build) @@ -1119,7 +1122,7 @@ generation of tests in nested combinations of contexts.") (define-public perl-test-yaml (package (name "perl-test-yaml") - (version "1.05") + (version "1.06") (source (origin (method url-fetch) @@ -1127,7 +1130,7 @@ generation of tests in nested combinations of contexts.") "Test-YAML-" version ".tar.gz")) (sha256 (base32 - "079nayc0fp2fwjv8s2yr069bdffln699j6z3lqr5dpx1v2qg82ck")))) + "0hxrfs7p9hqkhvv5nhk2hd3kh32smwng4nz47b8xf4iw2q1n2dr7")))) (build-system perl-build-system) (propagated-inputs `(("perl-test-base" ,perl-test-base))) @@ -1140,7 +1143,7 @@ support.") (define-public perl-test-trailingspace (package (name "perl-test-trailingspace") - (version "0.0300") + (version "0.0301") (source (origin (method url-fetch) @@ -1150,7 +1153,7 @@ support.") ".tar.gz")) (sha256 (base32 - "01slmrcjfq38mpdg3hlb7lnnbgsqbn26958y3hzx0zwrif40pigr")))) + "0w2rvsksv7cmf80v632xm2rwxrv933kzz97839yhwynvg9s7b252")))) (build-system perl-build-system) (native-inputs `(("perl-module-build" ,perl-module-build) diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm index 14dab3a65c..5fe393e17d 100644 --- a/gnu/packages/perl.scm +++ b/gnu/packages/perl.scm @@ -7890,6 +7890,28 @@ six-element array, and return the corresponding time(2) value in seconds since the system epoch.") (license (package-license perl)))) +(define-public perl-time-piece + (package + (name "perl-time-piece") + (version "1.3203") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/E/ES/ESAYM/Time-Piece-" + version ".tar.gz")) + (sha256 + (base32 "0hbg99v8xqy3nx6nrjpwh1w6xwqpfflz0djkbdd72kvf8zvglwb9")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Time-Piece/") + (synopsis "Object-Oriented time objects") + (description + "This module replaces the standard @code{localtime} and @code{gmtime} +functions with implementations that return objects. It does so in a +backwards-compatible manner, so that using these functions as documented will +still work as expected.") + (license perl-license))) + (define-public perl-timedate (package (name "perl-timedate") diff --git a/gnu/packages/photo.scm b/gnu/packages/photo.scm index 666058c9dc..34a2180500 100644 --- a/gnu/packages/photo.scm +++ b/gnu/packages/photo.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2017 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2017 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> @@ -59,7 +59,7 @@ #:use-module (gnu packages xfig) #:use-module (gnu packages xorg) #:use-module (gnu packages xml) - #:use-module (srfi srfi-1) + #:use-module ((srfi srfi-1) #:hide (zip)) #:use-module (srfi srfi-26)) (define-public libraw @@ -337,7 +337,7 @@ photographic equipment.") (build-system cmake-build-system) (arguments `(#:tests? #f ; There are no tests. - #:configure-flags '("-DCMAKE_INSTALL_LIBDIR=lib") + #:configure-flags '("-DCMAKE_INSTALL_LIBDIR=lib" "-DBINARY_PACKAGE_BUILD=On") #:make-flags (list (string-append "CPATH=" (assoc-ref %build-inputs "ilmbase") diff --git a/gnu/packages/popt.scm b/gnu/packages/popt.scm index 9c125dcc4f..fbee08bd0b 100644 --- a/gnu/packages/popt.scm +++ b/gnu/packages/popt.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013, 2014, 2016 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -95,14 +96,14 @@ similar to getopt(3), it contains a number of enhancements, including: (define-public gflags (package (name "gflags") - (version "2.2.0") + (version "2.2.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/gflags/gflags" "/archive/v" version ".tar.gz")) (sha256 (base32 - "120z4w40zr4s8wvfyw1bdmqvincwrwjnimzlwhs1ficaa333cv26")) + "03lxc2ah8i392kh1naq99iip34k4fpv22kwflyx3byd2ssycs9xf")) (file-name (string-append name "-" version ".tar.gz")))) (build-system cmake-build-system) (arguments diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 4219e5c082..37aa43e2c4 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -1134,10 +1134,24 @@ Python 3.3+.") (synopsis "Python extension wrapping the ICU C++ API") (description "PyICU is a python extension wrapping the ICU C++ API.") + (properties `((python2-variant . ,(delay python2-pyicu)))) (license license:x11))) (define-public python2-pyicu - (package-with-python2 python-pyicu)) + (let ((base (package-with-python2 + (strip-python2-variant python-pyicu)))) + (package + (inherit base) + (arguments + `(,@(package-arguments base) + #:phases + (modify-phases %standard-phases + (add-before 'check 'delete-failing-test + (λ _ + ;; XXX: This fails due to Unicode issues unique to Python 2, + ;; it seems: <https://github.com/ovalhub/pyicu/issues/61>. + (delete-file "test/test_Script.py") + #t)))))))) (define-public python2-dogtail ;; Python 2 only, as it leads to "TabError: inconsistent use of tabs and @@ -9954,7 +9968,7 @@ Features: (define-public python-dulwich (package (name "python-dulwich") - (version "0.16.3") + (version "0.18.6") (source (origin (method url-fetch) @@ -9962,7 +9976,8 @@ Features: "dulwich-" version ".tar.gz") (pypi-uri "dulwich" version))) (sha256 - (base32 "0fl47vzfgc3w3rmhn8naii905cjqcp0vc68iyvymxp7567hh6als")))) + (base32 + "1aa1xfrxkc3j9s4xi0llhf5gndyi9ryprcxsqfa5fcb8ph34981q")))) (build-system python-build-system) (arguments `(#:phases @@ -11594,6 +11609,22 @@ related APIs. The binding is created using the standard @code{ctypes} library.") (license license:bsd-3))) +(define-public python2-pyopengl-accelerate + (package + (inherit python2-pyopengl) + (name "python2-pyopengl-accelerate") + (version "3.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyOpenGL-accelerate" version)) + (sha256 + (base32 + "0464c1ifzk0k92lyndikmvzjgnx1y25r7bkkc8pnxm4kp1q4czwj")))) + (synopsis "Acceleration code for PyOpenGL") + (description + "This is the Cython-coded accelerator module for PyOpenGL."))) + (define-public python-rencode (package (name "python-rencode") diff --git a/gnu/packages/rsync.scm b/gnu/packages/rsync.scm index dba4e89a05..d7fc188af2 100644 --- a/gnu/packages/rsync.scm +++ b/gnu/packages/rsync.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2012, 2013 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016 Mark H Weaver <mhw@netris.org> +;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -38,7 +39,15 @@ version ".tar.gz")) (sha256 (base32 - "1hm1q04hz15509f0p9bflw4d6jzfvpm1d36dxjwihk1wzakn5ypc")))) + "1hm1q04hz15509f0p9bflw4d6jzfvpm1d36dxjwihk1wzakn5ypc")) + (patches (search-patches "rsync-CVE-2017-16548.patch" + "rsync-CVE-2017-17433.patch" + "rsync-CVE-2017-17433-fix-tests.patch" + "rsync-CVE-2017-17434-pt1.patch" + "rsync-CVE-2017-17434-pt2.patch" + )) + )) + (properties `((lint-hidden-cve . ("CVE-2017-15994")))) ; introduced after 3.1.2 (build-system gnu-build-system) (inputs `(("perl" ,perl) ("acl" ,acl))) diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 5a7548df68..776f84e07a 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -50,6 +50,7 @@ (define-public ruby (package (name "ruby") + (replacement ruby-2.4.3) (version "2.4.2") (source (origin @@ -103,10 +104,30 @@ a focus on simplicity and productivity.") (home-page "https://ruby-lang.org") (license license:ruby))) +(define-public ruby-2.4.3 + (package + (inherit ruby) + (name "ruby") + (version "2.4.3") + (source + (origin + (method url-fetch) + (uri (string-append "http://cache.ruby-lang.org/pub/ruby/" + (version-major+minor version) + "/ruby-" version ".tar.xz")) + (sha256 + (base32 + "0l9bv67dgsphk42lmiskhrnh47hbyj6rfg2rcjx22xivpx07srr3")) + (modules '((guix build utils))) + (snippet `(begin + ;; Remove bundled libffi + (delete-file-recursively "ext/fiddle/libffi-3.2.1") + #t)))))) + (define-public ruby-2.3 (package (inherit ruby) - (version "2.3.5") + (version "2.3.6") (source (origin (method url-fetch) @@ -115,7 +136,7 @@ a focus on simplicity and productivity.") "/ruby-" version ".tar.xz")) (sha256 (base32 - "1npzcnq5kh0f9y88w5gj4v6ln8csr91361k3r43dmhlhn6mpsfkx")) + "0mlz0mk7yyxia37k8fdv8m8a72h61nfbns28430h796l4an6kng0")) (modules '((guix build utils))) (snippet `(begin ;; Remove bundled libffi @@ -124,7 +145,7 @@ a focus on simplicity and productivity.") (define-public ruby-2.2 (package (inherit ruby) - (version "2.2.8") + (version "2.2.9") (source (origin (method url-fetch) @@ -133,7 +154,7 @@ a focus on simplicity and productivity.") "/ruby-" version ".tar.xz")) (sha256 (base32 - "1c31slidv2bdnnir3qfmdjs193b5s2ycb9pnf1lc55kk0cazrsip")))))) + "0p18xykx8dm5mmlx5n5243z67lj4vbvwr70bnc5x12am22ql8fri")))))) (define-public ruby-2.1 (package (inherit ruby) diff --git a/gnu/packages/rust.scm b/gnu/packages/rust.scm index 583ea37c86..b4d98ee342 100644 --- a/gnu/packages/rust.scm +++ b/gnu/packages/rust.scm @@ -3,6 +3,8 @@ ;;; Copyright © 2016 Eric Le Bihan <eric.le.bihan.dev@free.fr> ;;; Copyright © 2016 ng0 <ng0@infotropique.org> ;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com> +;;; Copyright © 2017 Nikolai Merinov <nikolai.merinov@member.fsf.org> +;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,6 +31,7 @@ #:use-module (gnu packages elf) #:use-module (gnu packages flex) #:use-module (gnu packages gcc) + #:use-module (gnu packages gdb) #:use-module (gnu packages jemalloc) #:use-module (gnu packages linux) #:use-module (gnu packages llvm) @@ -37,17 +40,19 @@ #:use-module (gnu packages ssh) #:use-module (gnu packages tls) #:use-module (gnu packages version-control) + #:use-module (gnu packages) #:use-module (guix build-system cargo) #:use-module (guix build-system gnu) #:use-module (guix build-system trivial) #:use-module (guix download) + #:use-module (guix base16) ;for generated "cargo" native-inputs #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (ice-9 match) #:use-module (srfi srfi-26)) ;; Should be one less than the current released version. -(define %rust-bootstrap-binaries-version "1.15.0") +(define %rust-bootstrap-binaries-version "1.21.0") (define %rust-bootstrap-binaries (origin @@ -55,10 +60,25 @@ (uri (string-append "https://static.rust-lang.org/dist/" "rust-" %rust-bootstrap-binaries-version - "-i686-unknown-linux-gnu.tar.gz")) + "-" %host-type ".tar.gz")) (sha256 (base32 - "0wmkfx8pxmkkw021mrq9s3xhra8f0daqdl6j56pxyn4w39i0rzrw")))) + (match %host-type + ("i686-unknown-linux-gnu" + "1vnvqwz30hvyjcfr1f602lg43v2vlqjr3yhb5vr8xnrcc07yvjmp") + ("x86_64-unknown-linux-gnu" + "1s0866qcy0645bqhsbs3pvk2hi52ps8jzs7x096w0as033h707ml") + ("armv7-unknown-linux-gnueabihf" + "1ml8fjq2b6j2vn1j314w93pf4wjl97n1mbz609h3i7md0zqscvs1") + ("aarch64-unknown-linux-gnu" + "1hv4m2m7xjcph39r6baryfg23hjcr4sbsrfnd1lh0wn67k2fc7j9") + ("mips64el-unknown-linux-gnuabi64" + "0p7fzkfcqg5yvj86v434z351dp7s7pgns8nzxj0fz3hmbfbvlvn9") + (_ "")))))) ; Catch-all for other systems. + +(define %cargo-reference-project-file "/dev/null") +(define %cargo-reference-hash + "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855") (define (increment-rust-version rust-version major patch) (match (string-split rust-version #\.) @@ -92,7 +112,6 @@ (arguments `(#:tests? #f #:strip-binaries? #f - #:system "i686-linux" #:phases (modify-phases %standard-phases (delete 'configure) @@ -103,8 +122,7 @@ (gcc:lib (assoc-ref inputs "gcc:lib")) (libc (assoc-ref inputs "libc")) (zlib (assoc-ref inputs "zlib")) - (ld-so (string-append libc - ,(glibc-dynamic-linker "i686-linux"))) + (ld-so (string-append libc ,(glibc-dynamic-linker))) (rpath (string-append out "/lib:" zlib "/lib:" libc "/lib:" gcc:lib "/lib")) (rustc (string-append out "/bin/rustc")) @@ -112,14 +130,13 @@ (system* "bash" "install.sh" (string-append "--prefix=" out) (string-append "--components=rustc," - "rust-std-i686-unknown-linux-gnu")) + "rust-std-" %host-type)) (for-each (lambda (file) (system* "patchelf" "--set-rpath" rpath file)) (cons* rustc rustdoc (find-files out "\\.so$"))) (for-each (lambda (file) (system* "patchelf" "--set-interpreter" ld-so file)) (list rustc rustdoc)))))))) - (supported-systems '("i686-linux" "x86_64-linux")) (home-page "https://www.rust-lang.org") (synopsis "Prebuilt rust compiler") (description "This package provides a pre-built @command{rustc} compiler, @@ -129,7 +146,7 @@ which can in turn be used to build the final Rust compiler.") (define cargo-bootstrap (package (name "cargo-bootstrap") - (version (cargo-version %rust-bootstrap-binaries-version)) + (version (cargo-version %rust-bootstrap-binaries-version 1)) (source %rust-bootstrap-binaries) (build-system gnu-build-system) (native-inputs @@ -139,7 +156,6 @@ which can in turn be used to build the final Rust compiler.") (arguments `(#:tests? #f #:strip-binaries? #f - #:system "i686-linux" #:phases (modify-phases %standard-phases (delete 'configure) @@ -149,8 +165,7 @@ which can in turn be used to build the final Rust compiler.") (let* ((out (assoc-ref outputs "out")) (gcc:lib (assoc-ref inputs "gcc:lib")) (libc (assoc-ref inputs "libc")) - (ld-so (string-append libc - ,(glibc-dynamic-linker "i686-linux"))) + (ld-so (string-append libc ,(glibc-dynamic-linker))) (rpath (string-append out "/lib:" libc "/lib:" gcc:lib "/lib")) (cargo (string-append out "/bin/cargo"))) @@ -161,7 +176,6 @@ which can in turn be used to build the final Rust compiler.") "--set-interpreter" ld-so "--set-rpath" rpath cargo))))))) - (supported-systems '("i686-linux" "x86_64-linux")) (home-page "https://www.rust-lang.org") (synopsis "Prebuilt cargo package manager") (description "This package provides a pre-built @command{cargo} package @@ -196,11 +210,11 @@ manager, which is required to build itself.") (description "Meta package for a rust environment. Provides pre-compiled rustc-bootstrap and cargo-bootstrap packages.") (license license:asl2.0))) - + (define-public rustc (package (name "rustc") - (version (rustc-version %rust-bootstrap-binaries-version)) + (version (rustc-version %rust-bootstrap-binaries-version 1)) (source (origin (method url-fetch) (uri (string-append @@ -208,99 +222,139 @@ rustc-bootstrap and cargo-bootstrap packages.") "rustc-" version "-src.tar.gz")) (sha256 (base32 - "1d78jq7mc34n265by68amr9r4nzbiqrilfbwh7gx56ydn4gb6rpr")) - (modules '((guix build utils))) - (snippet - `(begin - (delete-file-recursively "src/llvm") - #t)))) + "1lrzzp0nh7s61wgfs2h6ilaqi6iq89f1pd1yaf65l87bssyl4ylb")) + (modules '((guix build utils))) + (snippet + `(begin + (delete-file-recursively "src/llvm") + #t)))) (build-system gnu-build-system) (native-inputs `(("bison" ,bison) ; For the tests ("cmake" ,cmake) ("flex" ,flex) ; For the tests + ("gdb" ,gdb) ; For the tests ("git" ,git) ("procps" ,procps) ; For the tests ("python-2" ,python-2) ("rust-bootstrap" ,rust-bootstrap) ("which" ,which))) (inputs - `(("jemalloc" ,jemalloc) + `(("jemalloc" ,jemalloc-4.5.0) ("llvm" ,llvm-3.9.1))) (arguments - `(#:phases + `(#:imported-modules ,%cargo-build-system-modules ;for `generate-checksums' + #:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-configure - (lambda _ - (substitute* "configure" - (("/usr/bin/env") (which "env")) ; Detect target CPU correctly. - (("probe_need CFG_CURL curl") "") ; Avoid curl build dependency. - ;; Newer LLVM has a NVPTX (NVIDIA) backend which the Rust - ;; Makefiles don't know about, causing a linker failure - ;; if we don't intervene. - ;; Therefore, we add NVPTX here. - ;; See <https://github.com/rust-lang/rust/issues/40698>. - ;; For the next release, we will have to use rustbuild. - ;; Right now, rustbuild doesn't work yet. - (("-DLLVM_TARGETS_TO_BUILD='") - "-DLLVM_TARGETS_TO_BUILD='NVPTX;")) ; Make LLVM >= 3.8.1 work. - (substitute* "src/tools/compiletest/src/util.rs" - (("(\"amd64\", \"x86_64\"),") "(\"amd64\", \"x86_64\"), -(\"nvptx\", \"nvptx\"),")) ; Make LLVM >= 3.8.1 work. - (substitute* "mk/main.mk" - (("LLVM_OPTIONAL_COMPONENTS=") - "LLVM_OPTIONAL_COMPONENTS=nvptx ")) ; Make LLVM >= 3.8.1 work. - #t)) (add-after 'unpack 'set-env (lambda _ (setenv "SHELL" (which "sh")) (setenv "CONFIG_SHELL" (which "sh")) + ;; guix llvm-3.9.1 package installs only shared libraries + (setenv "LLVM_LINK_SHARED" "1") #t)) (add-after 'unpack 'patch-tests (lambda* (#:key inputs #:allow-other-keys) (let ((bash (assoc-ref inputs "bash"))) - (substitute* "src/tools/tidy/src/main.rs" - (("^.*cargo.*::check.*$") "")) + (substitute* "src/build_helper/lib.rs" + ;; In same folder as gcc there is only "gcc-ar" utility + (("file\\.push_str\\(\"ar\"\\);") "file.push_str(\"gcc-ar\");")) (substitute* "src/libstd/process.rs" ;; The newline is intentional. ;; There's a line length "tidy" check in Rust which would ;; fail otherwise. - (("\"/bin/sh\"") (string-append " -\"" bash "/bin/sh\""))) - ;; See <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00222.html>. + (("\"/bin/sh\"") (string-append "\n\"" bash "/bin/sh\""))) + (substitute* "src/libstd/net/tcp.rs" + ;; There is no network in build environment + (("fn connect_timeout_unroutable") + "#[ignore]\nfn connect_timeout_unroutable")) + ;; <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00222.html> (substitute* "src/libstd/sys/unix/process/process_common.rs" - (("fn test_process_mask") "#[cfg_attr(target_os = \"linux\", ignore)] -fn test_process_mask")) + (("fn test_process_mask") "#[ignore]\nfn test_process_mask")) ;; Our ld-wrapper cannot process non-UTF8 bytes in LIBRARY_PATH. - ;; See <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00193.html>. + ;; <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00193.html> (delete-file-recursively "src/test/run-make/linker-output-non-utf8") + (substitute* "src/build_helper/lib.rs" + ;; Bug in Rust code. + ;; Current implementation assume that if dst not exist then it's mtime + ;; is 0, but in same time "src" have 0 mtime in guix build! + (("let threshold = mtime\\(dst\\);") + "if !dst.exists() {\nreturn false\n}\n let threshold = mtime(dst);")) #t))) + (add-after 'patch-source-shebangs 'patch-cargo-checksums + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "src/Cargo.lock" + (("(\"checksum .* = )\".*\"" all name) + (string-append name "\"" ,%cargo-reference-hash "\""))) + (for-each + (lambda (filename) + (use-modules (guix build cargo-build-system)) + (delete-file filename) + (let* ((dir (dirname filename))) + (display (string-append + "patch-cargo-checksums: generate-checksums for " + dir "\n")) + (generate-checksums dir ,%cargo-reference-project-file))) + (find-files "src/vendor" ".cargo-checksum.json")) + #t)) (replace 'configure (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (gcc (assoc-ref inputs "gcc")) + (gdb (assoc-ref inputs "gdb")) (binutils (assoc-ref inputs "binutils")) (python (assoc-ref inputs "python-2")) (rustc (assoc-ref inputs "rustc-bootstrap")) + (cargo (assoc-ref inputs "cargo-bootstrap")) (llvm (assoc-ref inputs "llvm")) - (jemalloc (assoc-ref inputs "jemalloc")) - (flags (list - (string-append "--prefix=" out) - (string-append "--datadir=" out "/share") - (string-append "--infodir=" out "/share/info") - (string-append "--default-linker=" gcc "/bin/gcc") - (string-append "--default-ar=" binutils "/bin/ar") - (string-append "--python=" python "/bin/python2") - (string-append "--local-rust-root=" rustc) - (string-append "--llvm-root=" llvm) - (string-append "--jemalloc-root=" jemalloc "/lib") - "--release-channel=stable" - "--enable-rpath" - "--enable-local-rust" - "--disable-rustbuild" ; rustbuild doesn't work yet. - "--disable-manage-submodules"))) - ;; Rust uses a custom configure script (no autoconf). - (zero? (apply system* "./configure" flags))))) + (jemalloc (assoc-ref inputs "jemalloc"))) + (call-with-output-file "config.toml" + (lambda (port) + (display (string-append " +[llvm] +[build] +cargo = \"" cargo "/bin/cargo" "\" +rustc = \"" rustc "/bin/rustc" "\" +python = \"" python "/bin/python2" "\" +gdb = \"" gdb "/bin/gdb" "\" +vendor = true +submodules = false +[install] +prefix = \"" out "\" +[rust] +default-linker = \"" gcc "/bin/gcc" "\" +default-ar = \"" binutils "/bin/ar" "\" +channel = \"stable\" +rpath = true +# There is 2 failed codegen tests: +# codegen/mainsubprogram.rs and codegen/mainsubprogramstart.rs +# This tests required patched LLVM +codegen-tests = false +[target." %host-type "] +llvm-config = \"" llvm "/bin/llvm-config" "\" +cc = \"" gcc "/bin/gcc" "\" +cxx = \"" gcc "/bin/g++" "\" +jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\" +[dist] +") port))) + #t))) + (add-before 'build 'reset-timestamps-after-changes + (lambda* (#:key inputs outputs #:allow-other-keys) + (define ref (stat "README.md")) + (for-each + (lambda (filename) + (set-file-time filename ref)) + (find-files "." #:directories? #t)) + #t)) + (replace 'build + (lambda* (#:key inputs outputs #:allow-other-keys) + (zero? (system* "./x.py" "build")))) + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (zero? (system* "./x.py" "test")))) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (zero? (system* "./x.py" "install")))) (add-after 'install 'wrap-rustc (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -325,7 +379,7 @@ safety and thread safety guarantees.") (define-public cargo (package (name "cargo") - (version (cargo-version (rustc-version %rust-bootstrap-binaries-version))) + (version (cargo-version (rustc-version %rust-bootstrap-binaries-version) 0)) (source (origin (method url-fetch) (uri (string-append "https://github.com/rust-lang/cargo/archive/" @@ -333,7 +387,7 @@ safety and thread safety guarantees.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1y0zy8gk1ly0wh57y78fisk7cdd92qk0x7z664f6l7lzl2krqs7w")))) + "0kr7rml7v2bm7zl8jcb3056h63zpyy9m08s212i8vfwxf6lf5fzl")))) (build-system cargo-build-system) (propagated-inputs `(("cmake" ,cmake) @@ -346,506 +400,992 @@ safety and thread safety guarantees.") ("python-2" ,python-2) ("zlib" ,zlib))) (native-inputs - `(("rust-openssl" + `(("git" ,git) ; required for tests + ;; Next dependencies generated with next command: + ;; cat Cargo.lock | awk ' + ;; /^"checksum/ + ;; { oname=name=$2; vers=$3; hash=$6; + ;; if (ns[name] != 1) { ns[name]=1; } else { name = name "-" vers; } + ;; print " (\"rust-" name "\""; + ;; print " ,(origin"; + ;; print " (method url-fetch)"; + ;; print " (uri (crate-uri \"" oname "\" \"" vers "\"))"; + ;; print " (file-name \"rust-" oname "\-\" vers "\") + ;; print " (sha256"; + ;; print " (base16-string->bytevector"; + ;; print " " hash "))))" + ;; }' + ("rust-advapi32-sys" ,(origin (method url-fetch) - (uri (crate-uri "openssl" "0.9.6")) + (uri (crate-uri "advapi32-sys" "0.2.0")) + (file-name "rust-advapi32-sys-0.2.0") (sha256 - (base32 - "0g28g692gby6izp9qmnwnyxyhf9b0870yhd500p18j9l69lxl00c")))) - ("rust-strsim" + (base16-string->bytevector + "e06588080cb19d0acb6739808aafa5f26bfb2ca015b2b6370028b44cf7cb8a9a")))) + ("rust-aho-corasick" ,(origin (method url-fetch) - (uri (crate-uri "strsim" "0.5.1")) + (uri (crate-uri "aho-corasick" "0.5.3")) + (file-name "rust-aho-corasick-0.5.3") (sha256 - (base32 - "0bj4fsm1l2yqbfpspyvjf9m3m50pskapcddzm0ji9c74jbgnkh2h")))) - ("rust-libc" + (base16-string->bytevector + "ca972c2ea5f742bfce5687b9aef75506a764f61d37f8f649047846a9686ddb66")))) + ("rust-aho-corasick-0.6.3" ,(origin (method url-fetch) - (uri (crate-uri "libc" "0.2.18")) + (uri (crate-uri "aho-corasick" "0.6.3")) + (file-name "rust-aho-corasick-0.6.3") (sha256 - (base32 - "0w5cghr0wx3hi2sclk8r9iyzlbxsakil87ada40q2ykyhky24655")))) + (base16-string->bytevector + "500909c4f87a9e52355b26626d890833e9e1d53ac566db76c36faa984b889699")))) + ("rust-atty" + ,(origin + (method url-fetch) + (uri (crate-uri "atty" "0.2.3")) + (file-name "rust-atty-0.2.3") + (sha256 + (base16-string->bytevector + "21e50800ec991574876040fff8ee46b136a53e985286fbe6a3bdfe6421b78860")))) + ("rust-backtrace" + ,(origin + (method url-fetch) + (uri (crate-uri "backtrace" "0.3.3")) + (file-name "rust-backtrace-0.3.3") + (sha256 + (base16-string->bytevector + "99f2ce94e22b8e664d95c57fff45b98a966c2252b60691d0b7aeeccd88d70983")))) + ("rust-backtrace-sys" + ,(origin + (method url-fetch) + (uri (crate-uri "backtrace-sys" "0.1.14")) + (file-name "rust-backtrace-sys-0.1.14") + (sha256 + (base16-string->bytevector + "c63ea141ef8fdb10409d0f5daf30ac51f84ef43bff66f16627773d2a292cd189")))) ("rust-bitflags" ,(origin (method url-fetch) (uri (crate-uri "bitflags" "0.7.0")) + (file-name "rust-bitflags-0.7.0") (sha256 - (base32 - "0v8hh6wdkpk9my8z8442g4hqrqf05h0qj53dsay6mv18lqvqklda")))) - ("rust-unicode-normalization" + (base16-string->bytevector + "aad18937a628ec6abcd26d1489012cc0e18c21798210f491af69ded9b881106d")))) + ("rust-bitflags-0.9.1" ,(origin (method url-fetch) - (uri (crate-uri "unicode-normalization" "0.1.2")) + (uri (crate-uri "bitflags" "0.9.1")) + (file-name "rust-bitflags-0.9.1") (sha256 - (base32 - "0whi4xxqcjfsz6ywyrfd5lhgk1a44c86qwgvfqcmzidshcpklr16")))) - ("rust-rand" + (base16-string->bytevector + "4efd02e230a02e18f92fc2735f44597385ed02ad8f831e7c1c1156ee5e1ab3a5")))) + ("rust-bufstream" ,(origin (method url-fetch) - (uri (crate-uri "rand" "0.3.14")) + (uri (crate-uri "bufstream" "0.1.3")) + (file-name "rust-bufstream-0.1.3") (sha256 - (base32 - "1984zvj8572ig28fz6idc4r96fx39h4lzmr07yf7kb7gdn6di497")))) - ("rust-gcc" + (base16-string->bytevector + "f2f382711e76b9de6c744cc00d0497baba02fb00a787f088c879f01d09468e32")))) + ("rust-cc" ,(origin (method url-fetch) - (uri (crate-uri "gcc" "0.3.39")) + (uri (crate-uri "cc" "1.0.0")) + (file-name "rust-cc-1.0.0") (sha256 - 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#:tests? #f ; FIXME + #:rustc ,rustc ; Force to use rustc from current file #:modules ((ice-9 match) (srfi srfi-1) ; 'every @@ -853,12 +1393,8 @@ safety and thread safety guarantees.") (guix build cargo-build-system)) #:phases (modify-phases %standard-phases - ;; Avoid cargo complaining about missmatched checksums. - (delete 'patch-source-shebangs) - (delete 'patch-generated-file-shebangs) - (delete 'patch-usr-bin-file) - (add-after 'unpack 'unpack-submodule-sources - (lambda* (#:key inputs #:allow-other-keys) + (add-after 'unpack 'unpack-dependencies + (lambda* (#:key inputs outputs #:allow-other-keys) (define (unpack source target) (mkdir-p target) (with-directory-excursion target @@ -871,37 +1407,58 @@ safety and thread safety guarantees.") (match entry ((name . src) (if (string-prefix? "rust-" name) - (let* ((rust-length (string-length "rust-")) - (rust-name (string-drop name - rust-length)) - (rsrc (string-append "vendor/" - rust-name)) - (unpack-status (unpack src rsrc))) - (touch (string-append rsrc "/.cargo-ok")) - (generate-checksums rsrc src) - unpack-status))) + (let* ((rust-length (string-length "rust-")) + (rust-name (string-drop name rust-length)) + (rsrc (string-append "vendor/" rust-name)) + (unpack-status (unpack src rsrc))) + (touch (string-append rsrc "/.cargo-ok")) + (generate-checksums rsrc src) + unpack-status))) (_ #t))) - (mkdir "vendor") - (every install-rust-library inputs))) - (add-after 'unpack 'set-environment-up + (mkdir "vendor") + (every install-rust-library inputs))) + (add-after 'patch-generated-file-shebangs 'patch-cargo-checksums (lambda* (#:key inputs #:allow-other-keys) - (let* ((gcc (assoc-ref inputs "gcc")) - (cc (string-append gcc "/bin/gcc"))) - (mkdir ".cargo") - (call-with-output-file ".cargo/config" - (lambda (p) - (format p " + (substitute* "Cargo.lock" + (("(\"checksum .* = )\".*\"" all name) + (string-append name "\"" ,%cargo-reference-hash "\""))) + (for-each + (lambda (filename) + (use-modules (guix build cargo-build-system)) + (delete-file filename) + (let* ((dir (dirname filename))) + (display (string-append + "patch-cargo-checksums: generate-checksums for " + dir "\n")) + (generate-checksums dir ,%cargo-reference-project-file))) + (find-files "vendor" ".cargo-checksum.json")) + #t)) + (replace 'configure + (lambda* (#:key inputs outputs #:allow-other-keys) + (substitute* "tests/build.rs" + (("/usr/bin/env") (which "env")) + ;; Guix llvm compiled without asmjs-unknown-emscripten at all + (("fn wasm32_final_outputs") "#[ignore]\nfn wasm32_final_outputs")) + (substitute* "tests/death.rs" + ;; Stuck when built in container + (("fn ctrl_c_kills_everyone") "#[ignore]\nfn ctrl_c_kills_everyone")) + (mkdir ".cargo") + (call-with-output-file ".cargo/config" + (lambda (port) + (display " [source.crates-io] registry = 'https://github.com/rust-lang/crates.io-index' replace-with = 'vendored-sources' [source.vendored-sources] directory = 'vendor' -"))) - (setenv "CMAKE_C_COMPILER" cc) - (setenv "CC" cc)) - #t)) - (delete 'configure)))) +" port))) + ;; Disable test for cross compilation support + (setenv "CFG_DISABLE_CROSS_TESTS" "1") + (setenv "SHELL" (which "sh")) + (setenv "CONFIG_SHELL" (which "sh")) + (setenv "CC" (string-append (assoc-ref inputs "gcc") "/bin/gcc")) + #t))))) (home-page "https://github.com/rust-lang/cargo") (synopsis "Build tool and package manager for Rust") (description "Cargo is a tool that allows Rust projects to declare their diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index 62da3be0fd..1986b07217 100644 --- a/gnu/packages/search.scm +++ b/gnu/packages/search.scm @@ -38,13 +38,14 @@ (define-public xapian (package (name "xapian") - (version "1.4.4") + (version "1.4.5") + ;; Note: When updating Xapian, remember to update xapian-bindings below. (source (origin (method url-fetch) (uri (string-append "https://oligarchy.co.uk/xapian/" version "/xapian-core-" version ".tar.xz")) (sha256 - (base32 "1n9j2w2as0flih3hgim7gprfxsx6gimijs91rxsjsi8shjlqbad6")))) + (base32 "0axhqrj202hbll9mcx1qdm8gsqj19216w3z02gyjbycxvr9gkdc5")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) ("util-linux" ,util-linux))) @@ -82,7 +83,7 @@ rich set of boolean query operators.") "/xapian-bindings-" version ".tar.xz")) (sha256 (base32 - "0fca9nsf7pj3fq991xcm5iainz3s8yqik4ycvavm09y486n3wciv")))) + "0cwx39764w24xd25w271had4w78lnw1dgz36yvlw1g3i19rqcy34")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--with-python3") diff --git a/gnu/packages/security-token.scm b/gnu/packages/security-token.scm index fa910a92aa..7c6b957411 100644 --- a/gnu/packages/security-token.scm +++ b/gnu/packages/security-token.scm @@ -145,18 +145,19 @@ the low-level development kit for the Yubico YubiKey authentication device.") (define-public pcsc-lite (package (name "pcsc-lite") - (version "1.8.22") + (version "1.8.23") (source (origin (method url-fetch) (uri (string-append - "https://alioth.debian.org/frs/download.php/file/4225/" + "https://alioth.debian.org/frs/download.php/file/4235/" "pcsc-lite-" version ".tar.bz2")) (sha256 (base32 - "01flkdyqs7kr6c63dv2qg8dwir3v9jlr9rzlw7vafrivxmhqydba")))) + "1jc9ws5ra6v3plwraqixin0w0wfxj64drahrbkyrrwzghqjjc9ss")))) (build-system gnu-build-system) (arguments - `(#:configure-flags '("--enable-usbdropdir=/var/lib/pcsc/drivers"))) + `(#:configure-flags '("--enable-usbdropdir=/var/lib/pcsc/drivers" + "--disable-libsystemd"))) (native-inputs `(("perl" ,perl) ; for pod2man ("pkg-config" ,pkg-config))) @@ -169,7 +170,6 @@ the low-level development kit for the Yubico YubiKey authentication device.") readers using the SCard API. pcsc-lite is used to connect to the PC/SC daemon from a client application and provide access to the desired reader.") (license (list license:bsd-3 ; pcsc-lite - license:expat ; src/sd-daemon.[ch] license:isc ; src/strlcat.c src/strlcpy.c license:gpl3+)))) ; src/spy/* diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm index 1f076999cb..343f50d6d7 100644 --- a/gnu/packages/shells.scm +++ b/gnu/packages/shells.scm @@ -511,11 +511,11 @@ Its features include: (license bsd-2)))) (define-public s-shell - (let ((commit "6604341edb3a775ff94415762af3ee9bd86bfb3c") - (revision "1")) + (let ((commit "da2e5c20c0c5f477ec3426dc2584889a789b1659") + (revision "2")) (package (name "s-shell") - (version (string-append "0.0.0-" revision "." (string-take commit 7))) + (version (git-version "0.0.0" revision commit)) (source (origin (method git-fetch) @@ -525,13 +525,15 @@ Its features include: (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1075cml6dl15d770j3m12yz90cjacsdslbv3gank1nxd76vmpdcr")))) + "0qiny71ww5nhzy4mnc8652hn0mlxyb67h333gbdxp4j4qxsi13q4")))) (build-system gnu-build-system) (inputs `(("linenoise" ,linenoise))) (arguments `(#:tests? #f - #:make-flags (list "CC=gcc") + #:make-flags (list "CC=gcc" + (string-append "PREFIX=" + (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases (add-after 'unpack 'install-directory-fix diff --git a/gnu/packages/skarnet.scm b/gnu/packages/skarnet.scm index 5a46b0db64..ce6fdc709d 100644 --- a/gnu/packages/skarnet.scm +++ b/gnu/packages/skarnet.scm @@ -47,8 +47,8 @@ ;; Sort source files deterministically so that the *.a ;; and *.so files are reproducible. (substitute* "Makefile" - (("\\$\\(ALL_SRCS:%.c=%.o\\)") - "$(sort $(ALL_SRCS:%.c=%.o))")) + (("\\$\\(wildcard src/lib\\*/\\*.c\\)") + "$(sort $(wildcard src/lib*/*.c))")) #t))))) (home-page "http://skarnet.org/software/skalibs/") (synopsis "Platform abstraction libraries for skarnet.org software") diff --git a/gnu/packages/sml.scm b/gnu/packages/sml.scm index 6e57c4a4a0..b9bd7a7e82 100644 --- a/gnu/packages/sml.scm +++ b/gnu/packages/sml.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 Andy Patterson <ajpatter@uwaterloo.ca> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,14 +30,14 @@ (define-public polyml (package (name "polyml") - (version "5.7") + (version "5.7.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/polyml/polyml/archive/v" version ".tar.gz")) (sha256 - (base32 "0ycjl746h0m22w9nsdssjl47d56jih12gpkdg3yw65gakj70sd0r")) + (base32 "0a3hcv80p9j0fny6726kvgmzjzdmak9xw7f7rv8sxv96nhjdi3fi")) (file-name (string-append name "-" version ".tar.gz")))) (build-system gnu-build-system) (inputs diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index bfa7e05f9d..d4d9c0e786 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2016, 2017 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2017 Kyle Meyer <kyle@kyleam.com> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -114,7 +115,7 @@ be output in text, PostScript, PDF or HTML.") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" - (version-prefix version 1) "/R-" + (version-major version) "/R-" version ".tar.gz")) (sha256 (base32 @@ -2942,14 +2943,14 @@ data.") (define-public r-foreach (package (name "r-foreach") - (version "1.4.3") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "foreach" version)) (sha256 (base32 - "10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y")))) + "0j2yj0rn0d5nbzz9nq5rqqgnxhp9pbd92q4klsarl2xpsn8119y0")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -2993,14 +2994,14 @@ using the parallel package.") (define-public r-domc (package (name "r-domc") - (version "1.3.4") + (version "1.3.5") (source (origin (method url-fetch) (uri (cran-uri "doMC" version)) (sha256 (base32 - "0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn")))) + "1vfrykvfvsyq12mypd266867ml1dcwc3rj5k9c3wrn5bddcm88kr")))) (properties `((upstream-name . "doMC"))) (build-system r-build-system) (propagated-inputs @@ -5121,14 +5122,14 @@ to Applied regression, Second Edition, Sage, 2011.") (define-public r-caret (package (name "r-caret") - (version "6.0-77") + (version "6.0-78") (source (origin (method url-fetch) (uri (cran-uri "caret" version)) (sha256 (base32 - "05c504567s2nppzfgi36mhszbym2pr80nf50dgxcxfx030721v5y")))) + "0h1nxzii2h80aslp1zsjczrlfmaks44sskabk4yq9c5rafc7ka6y")))) (build-system r-build-system) (propagated-inputs `(("r-foreach" ,r-foreach) diff --git a/gnu/packages/tcl.scm b/gnu/packages/tcl.scm index 8e94c67e47..5310655ce2 100644 --- a/gnu/packages/tcl.scm +++ b/gnu/packages/tcl.scm @@ -86,7 +86,7 @@ (define-public expect (package (name "expect") - (version "5.45") + (version "5.45.3") (source (origin (method url-fetch) @@ -94,7 +94,7 @@ version "/expect" version ".tar.gz")) (sha256 (base32 - "0h60bifxj876afz4im35rmnbnxjx4lbdqp2ja3k30fwa8a8cm3dj")))) + "1s9ba7m0bmg6brn4x030y2xg7hqara1fr4hlrrllm54mf5xp2865")))) (build-system gnu-build-system) (inputs `(;; TODO: Add these optional dependencies. diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 215511864a..68507cf645 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -97,7 +97,7 @@ configurable through a graphical wizard.") (define-public termite (package (name "termite") - (version "12") + (version "13") (source (origin (method git-fetch) @@ -109,7 +109,7 @@ configurable through a graphical wizard.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0s6dyg3vcqk5qcx90bs24wdnd3p56rdjdcanx4pcxvp6ksjl61jz")))) + "02cn70ygl93ghhkhs3xdxn5b1yadc255v3yp8cmhhyzsv5027hvj")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index adafdfd08b..4e8efc8faf 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -9,6 +9,7 @@ ;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -161,10 +162,12 @@ "--with-system-zlib" "--with-system-zziplib") - ;; Disable tests on mips64 to cope with a failure of luajiterr.test. - ;; XXX FIXME fix luajit properly on mips64. - #:tests? ,(not (string-prefix? "mips64" (or (%current-target-system) - (%current-system)))) + ;; Disable tests on mips64/aarch64 to cope with a failure of luajiterr.test. + ;; XXX FIXME fix luajit properly on mips64 and aarch64. + #:tests? ,(let ((s (or (%current-target-system) + (%current-system)))) + (not (or (string-prefix? "aarch64" s) + (string-prefix? "mips64" s)))) #:phases (modify-phases %standard-phases (add-after 'install 'postint @@ -3917,7 +3920,7 @@ This package contains the complete TeX Live distribution.") (define-public perl-text-bibtex (package (name "perl-text-bibtex") - (version "0.77") + (version "0.85") (source (origin (method url-fetch) @@ -3925,7 +3928,7 @@ This package contains the complete TeX Live distribution.") version ".tar.gz")) (sha256 (base32 - "0kkfx8skk763pivz6h2ffy2zdp1lvy6d5sz0kjaj0mdbjffvnnb4")))) + "036kxgbn1jf70pfm2lmjlzjwnhbkd888fp5lyvmkjpdd15gla18h")))) (build-system perl-build-system) (arguments `(#:phases diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm index 7843c120aa..44b42ce9b6 100644 --- a/gnu/packages/text-editors.scm +++ b/gnu/packages/text-editors.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2017 Feng Shu <tumashu@163.com> ;;; Copyright © 2017 ng0 <ng0@infotropique.org> ;;; Copyright © 2014 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.org> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -40,6 +41,7 @@ #:use-module (gnu packages lua) #:use-module (gnu packages ncurses) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages regex) #:use-module (gnu packages ruby) #:use-module (gnu packages terminals) #:use-module (gnu packages xml)) @@ -47,17 +49,19 @@ (define-public vis (package (name "vis") - (version "0.3") + (version "0.4") (source (origin (method url-fetch) (uri (string-append "https://github.com/martanne/" name "/archive/v" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0xvhkj4j8pcmpnsx7f93d6n2f068xnl7wacfs97vr0agxwrfvn5y")))) + (base32 + "1iclfsc9vn40fqfiz56vrw6dmr4x8q9gvav0b53kkpc6zcfa86zi")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; No tests. + `(#:test-target "test" + #:tests? #f ; no releases; snapshots are missing tests #:phases (modify-phases %standard-phases (add-after 'install 'wrap-binary @@ -80,7 +84,8 @@ (inputs `(("lua", lua) ("ncurses", ncurses) ("libtermkey", libtermkey) - ("lua-lpeg", lua-lpeg))) + ("lua-lpeg", lua-lpeg) + ("tre" ,tre))) (synopsis "Vim-like text editor") (description "Vis aims to be a modern, legacy free, simple yet efficient vim-like text diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm index d0948ab555..8eff723543 100644 --- a/gnu/packages/tls.scm +++ b/gnu/packages/tls.scm @@ -247,6 +247,7 @@ required structures.") (package (name "openssl") (version "1.0.2m") + (replacement openssl-1.0.2n) (source (origin (method url-fetch) (uri (list (string-append "https://www.openssl.org/source/openssl-" @@ -390,6 +391,25 @@ required structures.") (license license:openssl) (home-page "http://www.openssl.org/"))) +;; Fixes CVE-2017-3735, CVE-2017-3736, CVE-2017-3737, and CVE-2017-3738. +;; See <https://www.openssl.org/news/cl102.txt>. +(define-public openssl-1.0.2n + (package + (inherit openssl) + (version "1.0.2n") + (source (origin + (inherit (package-source openssl)) + (uri (list (string-append "https://www.openssl.org/source/openssl-" + version ".tar.gz") + (string-append "ftp://ftp.openssl.org/source/openssl-" + version ".tar.gz") + (string-append "ftp://ftp.openssl.org/source/old/" + (string-trim-right version char-set:letter) + "/openssl-" version ".tar.gz"))) + (sha256 + (base32 + "1zm82pyq5a9jm10q6iv7d3dih3xwjds4x30fqph3k317byvsn2rp")))))) + (define-public openssl-next (package (inherit openssl) @@ -681,7 +701,7 @@ OpenSSL libraries).") (define-public perl-crypt-openssl-bignum (package (name "perl-crypt-openssl-bignum") - (version "0.08") + (version "0.09") (source (origin (method url-fetch) @@ -691,7 +711,7 @@ OpenSSL libraries).") ".tar.gz")) (sha256 (base32 - "0gamn4dff1bz77nswacy1dlpn9fkwahzw7yvvik4nbwwy2s63hc8")))) + "1p22znbajq91lbk2k3yg12ig7hy5b4vy8igxwqkmbm4nhgxp4ki3")))) (build-system perl-build-system) (inputs `(("openssl" ,openssl))) (arguments perl-crypt-arguments) diff --git a/gnu/packages/upnp.scm b/gnu/packages/upnp.scm index 8fa62c9896..f2669f11a8 100644 --- a/gnu/packages/upnp.scm +++ b/gnu/packages/upnp.scm @@ -28,14 +28,14 @@ (define-public miniupnpc (package (name "miniupnpc") - (version "2.0.20171102") + (version "2.0.20171212") (source (origin (method url-fetch) (uri (string-append "https://miniupnp.tuxfamily.org/files/" name "-" version ".tar.gz")) (sha256 - (base32 "1m1552kkdxkyyb5gyykp0j8falxwf1424cm55y50q9l10l11g18l")))) + (base32 "0za7pr6hrr3ajkifirhhxfn3hlhl06f622g8hnj5h8y18sp3bwff")))) (build-system gnu-build-system) (native-inputs `(("python" ,python-2))) @@ -59,7 +59,8 @@ (lambda* (#:key outputs #:allow-other-keys) (substitute* "external-ip.sh" (("upnpc") - (string-append (assoc-ref outputs "out") "/bin/upnpc")))))))) + (string-append (assoc-ref outputs "out") "/bin/upnpc"))) + #t))))) (home-page "http://miniupnp.free.fr/") (synopsis "UPnP protocol client library") (description diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index a41ddf8da3..cbf5ce7d87 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -17,6 +17,7 @@ ;;; Copyright © 2017 André <eu@euandre.org> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at> +;;; Copyright © 2017 Oleg Pykhalov <go.wigust@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -50,6 +51,7 @@ #:use-module (gnu packages documentation) #:use-module (gnu packages base) #:use-module (gnu packages bison) + #:use-module (gnu packages boost) #:use-module (gnu packages cook) #:use-module (gnu packages curl) #:use-module (gnu packages docbook) @@ -57,18 +59,22 @@ #:use-module (gnu packages file) #:use-module (gnu packages flex) #:use-module (gnu packages gettext) + #:use-module (gnu packages gl) #:use-module (gnu packages groff) #:use-module (gnu packages haskell) #:use-module (gnu packages haskell-check) #:use-module (gnu packages haskell-crypto) #:use-module (gnu packages haskell-web) + #:use-module (gnu packages image) #:use-module (gnu packages java) #:use-module (gnu packages linux) + #:use-module (gnu packages maths) #:use-module (gnu packages nano) #:use-module (gnu packages ncurses) #:use-module (gnu packages ssh) #:use-module (gnu packages web) #:use-module (gnu packages openstack) + #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages perl-check) #:use-module (gnu packages pkg-config) @@ -80,6 +86,7 @@ #:use-module (gnu packages xml) #:use-module (gnu packages emacs) #:use-module (gnu packages compression) + #:use-module (gnu packages sdl) #:use-module (gnu packages swig) #:use-module (gnu packages tcl) #:use-module (gnu packages time) @@ -532,6 +539,18 @@ collaboration using typical untrusted file hosts or services.") (zero? (system* "tar" "--strip-components=1" "-C" "git" "-xf" (assoc-ref inputs "git:src"))))) + (add-after 'unpack 'patch-absolute-file-names + (lambda* (#:key inputs #:allow-other-keys) + (define (quoted-file-name input path) + (string-append "\"" input path "\"")) + (substitute* "ui-snapshot.c" + (("\"gzip\"") + (quoted-file-name (assoc-ref inputs "gzip") "/bin/gzip")) + (("\"bzip2\"") + (quoted-file-name (assoc-ref inputs "bzip2") "/bin/bzip2")) + (("\"xz\"") + (quoted-file-name (assoc-ref inputs "xz") "/bin/xz"))) + #t)) (delete 'configure) ; no configure script (add-after 'build 'build-man (lambda* (#:key make-flags #:allow-other-keys) @@ -552,7 +571,10 @@ collaboration using typical untrusted file hosts or services.") #t))))))) (native-inputs ;; For building manpage. - `(("asciidoc" ,asciidoc))) + `(("asciidoc" ,asciidoc) + ("gzip" ,gzip) + ("bzip2" ,bzip2) + ("xz" ,xz))) (inputs `(;; Cgit directly accesses some internal Git interfaces that changed in ;; Git 2.12. Try removing this special input and using the source of the @@ -1723,3 +1745,42 @@ network protocols, and core version control algorithms.") `(("java-javaewah" ,java-javaewah) ("java-jsch" ,java-jsch) ("java-slf4j-api" ,java-slf4j-api))))) + +(define-public gource + (package + (name "gource") + (version "0.47") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/acaudwell/Gource/archive/" + "gource-" version ".tar.gz")) + (sha256 + (base32 + "1llqwdnfa1pff8bxk27qsqff1fcg0a9kfdib0rn7p28vl21n1cgj")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list (string-append "--with-boost-libdir=" + (assoc-ref %build-inputs "boost") + "/lib")))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("boost" ,boost) + ("ftgl" ,ftgl) + ("glew" ,glew) + ("glm" ,glm) + ("glu" ,glu) + ("libpng" ,libpng) + ("mesa" ,mesa) + ("pcre" ,pcre) + ("sdl-union" ,(sdl-union (list sdl2 sdl2-image))))) + (home-page "http://gource.io/") + (synopsis "3D visualisation tool for source control repositories") + (description "@code{gource} provides a software version control +visualization. The repository is displayed as a tree where the root of the +repository is the centre, directories are branches and files are leaves. +Contributors to the source code appear and disappear as they contribute to +specific files and directories.") + (license license:gpl3+))) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 2ad0565db3..ed090107b3 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -589,14 +589,14 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).") (define-public ffmpeg (package (name "ffmpeg") - (version "3.4") + (version "3.4.1") (source (origin (method url-fetch) (uri (string-append "https://ffmpeg.org/releases/ffmpeg-" version ".tar.xz")) (sha256 (base32 - "1vzvpx8ixy8m44f8qwp833hv253hpghybgzbc4n8b3div3j0dvmf")))) + "1h4iz7q10wj04awr2wvmp60n7b09pfwrgwbbw9sgl7klcf52fxss")))) (build-system gnu-build-system) (inputs `(("fontconfig" ,fontconfig) @@ -762,19 +762,6 @@ convert and stream audio and video. It includes the libavcodec audio/video codec library.") (license license:gpl2+))) -;; XXX: Remove this when gst-libav and qtox supports 3.4. -(define-public ffmpeg-3.3 - (package - (inherit ffmpeg) - (version "3.3.5") - (source (origin - (method url-fetch) - (uri (string-append "https://ffmpeg.org/releases/ffmpeg-" - version ".tar.xz")) - (sha256 - (base32 - "00nq8ng2p16yb48acargaz1hlp9kq24vfwvkqjlslz4a7864k4x8")))))) - (define-public ffmpeg-2.8 (package (inherit ffmpeg) @@ -1142,7 +1129,7 @@ access to mpv's powerful playback capabilities.") (define-public youtube-dl (package (name "youtube-dl") - (version "2017.12.02") + (version "2017.12.14") (source (origin (method url-fetch) (uri (string-append "https://yt-dl.org/downloads/" @@ -1150,7 +1137,7 @@ access to mpv's powerful playback capabilities.") version ".tar.gz")) (sha256 (base32 - "1qf5gz00cnxzab3cwh9kxzhs08mddm0nwvb7j5z5xxzhi6wkslha")))) + "01hvsch7ybff0amivl86m6klz156bm3hfh66zz5q8ha2af5j44hj")))) (build-system python-build-system) (arguments ;; The problem here is that the directory for the man page and completion @@ -1877,6 +1864,41 @@ present in modern GPUs.") implementation.") (license (license:x11-style "file://COPYING")))) +(define-public libvdpau-va-gl + (package + (name "libvdpau-va-gl") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/i-rinat/libvdpau-va-gl/" + "releases/download/v" version "/libvdpau-va-gl-" + version ".tar.gz")) + (sha256 + (base32 + "1x2ag1f2fwa4yh1g5spv99w9x1m33hbxlqwyhm205ssq0ra234bx")) + (patches (search-patches "libvdpau-va-gl-unbundle.patch")) + (modules '((guix build utils))) + (snippet '(delete-file-recursively "3rdparty")))) + (build-system cmake-build-system) + (arguments + '(#:tests? #f)) ; Tests require a running X11 server, with VA-API support. + (native-inputs + `(("libvdpau" ,libvdpau) + ("pkg-config" ,pkg-config))) + (inputs + `(("libva" ,libva) + ("mesa" ,mesa))) + (home-page "https://github.com/i-rinat/libvdpau-va-gl") + (synopsis "VDPAU driver with VA-API/OpenGL backend") + (description + "Many applications can use VDPAU to accelerate portions of the video +decoding process and video post-processing to the GPU video hardware. Since +there is no VDPAU available on Intel chips, they fall back to different drawing +techniques. This driver uses OpenGL under the hood to accelerate drawing and +scaling and VA-API (if available) to accelerate video decoding.") + (license license:expat))) + (define-public recordmydesktop (package (name "recordmydesktop") diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index d9fae08b25..a1709b0b6d 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -36,6 +36,7 @@ #:use-module (gnu packages dns) #:use-module (gnu packages docbook) #:use-module (gnu packages documentation) + #:use-module (gnu packages fontutils) #:use-module (gnu packages gl) #:use-module (gnu packages glib) #:use-module (gnu packages gnome) @@ -62,7 +63,7 @@ #:use-module (guix build-system gnu) #:use-module (guix build-system python) #:use-module (guix download) - #:use-module ((guix licenses) #:select (gpl2 gpl2+ lgpl2.1 lgpl2.1+)) + #:use-module ((guix licenses) #:select (gpl2 gpl2+ gpl3+ lgpl2.1 lgpl2.1+)) #:use-module (guix packages) #:use-module (guix utils) #:use-module (srfi srfi-1)) @@ -80,19 +81,16 @@ (define-public qemu (package (name "qemu") - (version "2.10.1") + (version "2.10.2") (source (origin (method url-fetch) (uri (string-append "https://download.qemu.org/qemu-" version ".tar.xz")) (patches (search-patches "qemu-CVE-2017-15038.patch" - "qemu-CVE-2017-15118.patch" - "qemu-CVE-2017-15119.patch" - "qemu-CVE-2017-15268.patch" "qemu-CVE-2017-15289.patch")) (sha256 (base32 - "1ahwl7r18iw2ds0q3c51nlivqsan9hcgnc8bbf9pv366iy81mm8x")))) + "17w21spvaxaidi2am5lpsln8yjpyp2zi3s3gc6nsxj5arlgamzgw")))) (build-system gnu-build-system) (arguments '(;; Running tests in parallel can occasionally lead to failures, like: @@ -687,3 +685,70 @@ mainly implemented in user space.") ;; The project is licensed under GPLv2; files in the lib/ directory are ;; LGPLv2.1. (license (list gpl2 lgpl2.1)))) + +(define-public qmpbackup + (package + (name "qmpbackup") + (version "0.2") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/abbbi/qmpbackup/archive/" + version ".tar.gz")) + (sha256 + (base32 + "10k9mnb1yrg4gw1rvz4kw4dxc4aajl8gnjrpm3axqkg63qmxj3qn")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (home-page "https://github.com/abbbi/qmpbackup") + (synopsis "Backup and restore QEMU machines") + (description "qmpbackup is designed to create and restore full and +incremental backups of running QEMU virtual machines via QMP, the QEMU +Machine Protocol.") + (license gpl3+))) + +(define-public lookingglass + (package + (name "lookingglass") + (version "a5") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/gnif/LookingGlass/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version)) + (sha256 + (base32 + "0lrb821914fp27xaq0spwhbblssz55phiygvdlvcrkifa138v8pf")))) + (build-system gnu-build-system) + (inputs `(("fontconfig" ,fontconfig) + ("glu" ,glu) + ("mesa" ,mesa) + ("openssl" ,openssl) + ("sdl2" ,sdl2) + ("sdl2-ttf" ,sdl2-ttf) + ("spice-protocol" ,spice-protocol))) + (native-inputs `(("pkg-config", pkg-config))) + (arguments + `(#:tests? #f ;; No tests are available. + #:phases (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (chdir "client") + #t)) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (install-file "bin/looking-glass-client" + (string-append (assoc-ref outputs "out") + "/bin")) + #t))))) + (home-page "https://looking-glass.hostfission.com") + (synopsis "KVM Frame Relay (KVMFR) implementation") + (description "Looking Glass allows the use of a KVM (Kernel-based Virtual +Machine) configured for VGA PCI Pass-through without an attached physical +monitor, keyboard or mouse. It displays the VM's rendered contents on your main +monitor/GPU.") + ;; This package requires SSE instructions. + (supported-systems '("i686-linux" "x86_64-linux")) + (license gpl2+))) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index fff4b767ca..8eb4b885bd 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -145,6 +145,36 @@ and its related documentation.") (license l:asl2.0) (home-page "https://httpd.apache.org/"))) +(define-public mod-wsgi + (package + (name "mod-wsgi") + (version "4.5.22") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/GrahamDumpleton/mod_wsgi/archive/" + version ".tar.gz")) + (sha256 + (base32 + "0n1yhmrfp8mjbsngmyjl937c6rc0069p6wdi1lknrbn1q42hzw6q")))) + (build-system gnu-build-system) + (arguments + '(#:tests? #f ;; TODO: Can't figure out if there are tests + #:make-flags (list + (string-append "DESTDIR=" + (assoc-ref %outputs "out")) + "LIBEXECDIR=/modules"))) + (inputs + `(("httpd" ,httpd) + ("python" ,python-wrapper))) + (synopsis "Apache HTTPD module for Python WSGI applications") + (description + "The mod_wsgi module for the Apache HTTPD Server adds support for running +applications that support the Python @acronym{WSGI, Web Server Gateway +Interface} specification.") + (license l:asl2.0) + (home-page "https://modwsgi.readthedocs.io/"))) + (define-public nginx (package (name "nginx") diff --git a/gnu/packages/wine.scm b/gnu/packages/wine.scm index b4c3c194f8..b4f6573cf5 100644 --- a/gnu/packages/wine.scm +++ b/gnu/packages/wine.scm @@ -26,6 +26,7 @@ #:use-module (guix utils) #:use-module (guix build-system gnu) #:use-module (gnu packages) + #:use-module (gnu packages admin) #:use-module (gnu packages audio) #:use-module (gnu packages bison) #:use-module (gnu packages compression) @@ -38,6 +39,7 @@ #:use-module (gnu packages ghostscript) #:use-module (gnu packages gl) #:use-module (gnu packages glib) + #:use-module (gnu packages gstreamer) #:use-module (gnu packages linux) #:use-module (gnu packages openldap) #:use-module (gnu packages perl) @@ -49,6 +51,7 @@ #:use-module (gnu packages samba) #:use-module (gnu packages scanner) #:use-module (gnu packages tls) + #:use-module (gnu packages video) #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) @@ -73,10 +76,12 @@ `(("alsa-lib" ,alsa-lib) ("dbus" ,dbus) ("cups" ,cups) + ("eudev" ,eudev) ("fontconfig" ,fontconfig) ("freetype" ,freetype) ("glu" ,glu) ("gnutls" ,gnutls) + ("gst-plugins-base" ,gst-plugins-base) ("lcms" ,lcms) ("libxml2" ,libxml2) ("libxslt" ,libxslt) @@ -85,6 +90,7 @@ ("libldap" ,openldap) ("libnetapi" ,samba) ("libsane" ,sane-backends) + ("libpcap" ,libpcap) ("libpng" ,libpng) ("libjpeg" ,libjpeg) ("libtiff" ,libtiff) @@ -102,6 +108,7 @@ ("openal" ,openal) ("pulseaudio" ,pulseaudio) ("unixodbc" ,unixodbc) + ("v4l-utils" ,v4l-utils) ("zlib" ,zlib))) (arguments `(;; Force a 32-bit build (under the assumption that this package is @@ -151,10 +158,13 @@ integrate Windows applications into your desktop.") (inherit wine) (name "wine64") (arguments - `(#:configure-flags + `(#:make-flags + (list "SHELL=bash" + (string-append "libdir=" %output "/lib")) + #:configure-flags (list "--enable-win64" - (string-append "LDFLAGS=-Wl,-rpath=" %output "/lib64")) - ,@(strip-keyword-arguments '(#:configure-flags #:system) + (string-append "LDFLAGS=-Wl,-rpath=" %output "/lib")) + ,@(strip-keyword-arguments '(#:configure-flags #:make-flags #:system) (package-arguments wine)))) (synopsis "Implementation of the Windows API (64-bit version)") (supported-systems '("x86_64-linux" "aarch64-linux")))) diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 6912d6f2d9..8098560e4c 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -8,8 +8,8 @@ ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Al McElrath <hello@yrns.org> ;;; Copyright © 2016 Carlo Zancanaro <carlo@zancanaro.id.au> -;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2016, 2017 ng0 <ng0@infotropique.org> +;;; Copyright © 2016, 2017 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2016, 2017 ng0 <ng0@n0.is> ;;; Copyright © 2016 doncatnip <gnopap@gmail.com> ;;; Copyright © 2016 Ivan Vilata i Balaguer <ivan@selidor.net> ;;; Copyright © 2017 Mekeor Melire <mekeor.melire@gmail.com> @@ -44,6 +44,8 @@ #:use-module (gnu packages haskell) #:use-module (gnu packages haskell-check) #:use-module (gnu packages haskell-web) + #:use-module (gnu packages autotools) + #:use-module (gnu packages gawk) #:use-module (gnu packages base) #:use-module (gnu packages pkg-config) #:use-module (gnu packages perl) @@ -68,6 +70,7 @@ #:use-module (gnu packages gperf) #:use-module (gnu packages imagemagick) #:use-module (gnu packages lua) + #:use-module (gnu packages linux) #:use-module (gnu packages suckless) #:use-module (guix download) #:use-module (guix git-download)) @@ -335,6 +338,118 @@ and locate windows on all your workspaces, using an interactive dmenu prompt.") (license (license:non-copyleft "http://www.wtfpl.net/txt/copying/"))))) +(define-public i3lock-color + (package + (name "i3lock-color") + (version "2.10.1c") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/PandorasFox/i3lock-color/" + "archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "119xvdm4r6irqk0mar80hx6s8ydw26y35h7712rd7nbg7pb7i053")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;No tests included. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'bootstrap + (lambda _ + (zero? (system* "autoreconf" "-vfi"))))))) + (inputs + `(("xcb-util-image" ,xcb-util-image) + ("xcb-util" ,xcb-util) + ("libxcb" ,libxcb) + ("linux-pam" ,linux-pam) + ("libxkbcommon" ,libxkbcommon) + ("libev" ,libev) + ("cairo" ,cairo))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("autoconf" ,autoconf) + ("automake" ,automake))) + (home-page "https://github.com/PandorasFox/i3lock-color") + (synopsis "Screen locker with color configuration support") + (description + "i3lock-color is a simpler X11 screen locker derived from i3lock. +Features include: + +@enumerate +@item forking process, the locked screen is preserved when you suspend to RAM; +@item specify background color or image to be displayed in the lock screen; +@item many additional color options. +@end enumerate") + (license license:bsd-3))) + +(define-public i3lock-fancy + (package + (name "i3lock-fancy") + (version "0.2") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/meskarune/i3lock-fancy/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "020m7mnfq5cvir7p9v3hkb7cvb4cai33wppxl2zdwscwwjnchc5y")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;No tests included + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (icons (string-append out "/share/i3lock-fancy/icons/")) + (wmctrl (string-append (assoc-ref inputs "wmctrl") + "/bin/wmctrl")) + (mconvert (string-append (assoc-ref inputs "imagemagick") + "/bin/convert")) + (mimport (string-append (assoc-ref inputs "imagemagick") + "/bin/import")) + (awk (string-append (assoc-ref inputs "gawk") + "/bin/gawk"))) + + (substitute* "lock" + (("$(which wmctrl)") wmctrl) + (("convert") mconvert) + (("shot=\\(import") (string-append "shot=\(" mimport)) + (("awk -F") (string-append awk " -F")) + ((" awk") awk) + (("\\$scriptpath/icons/") icons)) + #t))) + (delete 'build) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (icons (string-append out "/share/i3lock-fancy/icons/"))) + + (install-file "lock" bin) + (rename-file (string-append bin "/lock") + (string-append bin "/i3lock-fancy")) + (copy-recursively "icons" icons) + #t)))))) + (native-inputs + `(("imagemagick" ,imagemagick) + ("wmctrl" ,wmctrl) + ("gawk" ,gawk))) + (home-page "https://github.com/meskarune/i3lock-fancy") + (synopsis "Screen locker with screenshot function") + (description + "@code{i3lock-fancy} is a Bash script that takes a screenshot of +the desktop, blurs the background and adds a lock icon and text. +It requires @code{i3lock-color} or @code{i3lock} and can optionally +be passed any screenshot util like @code{scrot}. +This screen locker can be used with any window manager or +desktop environment.") + (license license:expat))) + (define-public xmonad (package (name "xmonad") diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index 3a1cd9293c..6a4407c772 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -858,14 +858,14 @@ Escape key when Left Control is pressed and released on its own.") (define-public libwacom (package (name "libwacom") - (version "0.25") + (version "0.26") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/linuxwacom/libwacom/" name "-" version ".tar.bz2")) (sha256 (base32 - "1k20w2fkql3yr0dpdg51jjwzv7d4kp53ajmpyhcjxa08s0n8dl19")))) + "0xpvkjvzaj9blcmw8ha46616bzfivj99kwzvr91clxd6iaf11r63")))) (build-system glib-or-gtk-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -890,7 +890,7 @@ Wacom tablet applet.") (define-public xf86-input-wacom (package (name "xf86-input-wacom") - (version "0.34.2") + (version "0.35.0") (source (origin (method url-fetch) (uri (string-append @@ -898,7 +898,7 @@ Wacom tablet applet.") name "-" version ".tar.bz2")) (sha256 (base32 - "073bf12ka1mcqvr1sviixb51bsfx37jalrj9xw53f10i2kdvkl9a")))) + "0za44snc0zirq65a4lxsmg7blp1bynj6j835hm459x8yx1qhmxjm")))) (arguments `(#:configure-flags (list (string-append "--with-sdkdir=" diff --git a/gnu/packages/xfig.scm b/gnu/packages/xfig.scm index e51558e0be..3bb839f6e4 100644 --- a/gnu/packages/xfig.scm +++ b/gnu/packages/xfig.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch> +;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -23,106 +24,44 @@ #:use-module (guix download) #:use-module (guix build-system gnu) #:use-module (gnu packages) + #:use-module (gnu packages freedesktop) #:use-module (gnu packages xorg) #:use-module (gnu packages image) - #:use-module (gnu packages groff) #:use-module (gnu packages compression)) (define-public xfig (package (name "xfig") - (version "3.2.5c") + (version "3.2.6a") (source (origin (method url-fetch) - (uri (string-append "mirror://sourceforge/mcj/mcj-source/xfig." - version ".full.tar.gz")) + (uri (string-append "mirror://sourceforge/mcj/" + name "-" version ".tar.xz")) (sha256 (base32 - "1yd1jclvw5w3ja4jjzr1ysbn8iklh88wq84jn9d1gavrbfbqyqpa")))) + "0z1636w27hvgjpq98z40k8h535b4x2xr2whkvr7bibaa89fynym8")))) (build-system gnu-build-system) (native-inputs - `(("imake" ,imake) - ("makedepend" ,makedepend) - ("groff" ,groff))) ;for creating some doc + ;; For tests. + `(("desktop-file-utils" ,desktop-file-utils))) (inputs `(("libxaw3d" ,libxaw3d) - ;; Requires libjpeg>=9a, otherwise jmorecfg.h define an enum FALSE that - ;; conflicts with the FALSE macro from X11/Intrinsic.h - ("libjpeg" ,libjpeg) - ("libpng" ,libpng) - ("libxpm" ,libxpm) - ("libx11" ,libx11) - ("libxmu" ,libxmu) - ("libxt" ,libxt) - ("zlib" ,zlib))) + ("libjpeg" ,libjpeg) + ("libpng" ,libpng) + ("libxpm" ,libxpm) + ("libx11" ,libx11) + ("libxt" ,libxt))) (arguments - `(#:tests? #f - #:phases + `(#:phases (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((imake (assoc-ref inputs "imake")) - (out (assoc-ref outputs "out"))) - (substitute* "Imakefile" - (("XCOMM XAPPLOADDIR = /home/user/xfig *") - (string-append "XAPPLOADDIR = " out ,%app-defaults-dir)) - (("XCOMM (BINDIR = )[[:graph:]]*" _ front) - (string-append front out "/bin")) - (("(PNGLIBDIR = )[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "libpng") "/lib")) - (("(PNGINC = -I)[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "libpng") "/include")) - (("(JPEGLIBDIR = )[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "libjpeg") "/lib")) - (("(JPEGINC = -I)[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "libjpeg") "/include")) - (("(ZLIBDIR = )[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "zlib") "/lib")) - (("(XPMLIBDIR = )[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "libxpm") "/lib")) - (("(XPMINC = -I)[[:graph:]]*" _ front) - (string-append front (assoc-ref inputs "libxpm") "/include")) - (("(XFIGLIBDIR = )[[:graph:]]*" _ front) - (string-append front out "/lib")) - (("(XFIGDOCDIR = )[[:graph:]]*" _ front) - (string-append front out "/share/doc")) - (("XCOMM USEINLINE") "USEINLINE")) - ;; The -a argument is required in order to pick up the correct paths - ;; to several X header files. - (invoke "xmkmf" "-a") - ;; Reset some variables that are inherited from imake templates - (substitute* "Makefile" - ;; These imake variables somehow remain undefined - (("DefaultGcc2[[:graph:]]*Opt") "-O2") - ;; Reset a few variable defaults that are set in imake templates - ((imake) out) - (("(MANPATH = )[[:graph:]]*" _ front) - (string-append front out "/share/man")) - (("(CONFDIR = )([[:graph:]]*)" _ front default) - (string-append front out default)))) - #t)) - (add-after - 'install 'install/libs - (lambda _ - (zero? (system* "make" "install.libs")))) - (add-after - 'install 'install/doc - (lambda _ - (begin - ;; The Doc/xfig_man.html file is expected by the install.html - ;; target, but is not present in the tarball, so generate it. - (use-modules (ice-9 popen)) - (let* ((in (open-pipe* OPEN_READ - "groff" "-mandoc" "-Thtml" - "Doc/xfig.man")) - (out (open-output-file "Doc/xfig_man.html"))) - (begin - (dump-port in out) - (close-pipe in) - (close-port out))) - (zero? (system* "make" "install.doc")))))))) - (home-page "http://xfig.org/") + (add-before 'install 'strip-bogus-exec-prefix + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "xfig.desktop" + ;; The patch-dot-desktop-files phase requires a relative name. + (("Exec=/usr/bin/xfig") "Exec=xfig")) + #t))))) + (home-page "http://mcj.sourceforge.net/") (synopsis "Interactive drawing tool") (description "Xfig is an interactive drawing tool which runs under X Window System. @@ -195,7 +134,7 @@ selected in various ways. For text, 35 fonts are available.") (add-after 'install 'install/doc (lambda _ (zero? (system* "make" "install.man"))))))) - (home-page "http://www.xfig.org/") + (home-page "http://mcj.sourceforge.net/") (synopsis "Create portable LaTeX figures") (description "Transfig creates a makefile to translate figures described in Fig code diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 4ed2c010c4..bbf7e0a5f6 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -5920,7 +5920,7 @@ basic eye-candy effects.") (define-public xpra (package (name "xpra") - (version "2.1.3") + (version "2.2") (source (origin (method url-fetch) @@ -5928,41 +5928,42 @@ basic eye-candy effects.") version ".tar.xz")) (sha256 (base32 - "0r0l3p59q05fmvkp3jv8vmny2v8m1vyhqkg6b9r2qgxn1kcxx7rm")))) + "0gi0i5pbhfzr5j4mbngjxvrk6r4lvigw4w2104znplmmrf1mw6y2")))) (build-system python-build-system) - (inputs `(("ffmpeg", ffmpeg) - ("flac", flac) + (inputs `(("ffmpeg" ,ffmpeg) + ("flac" ,flac) ("gtk+-2" ,gtk+-2) ;; no full GTK3 support yet - ("libjpeg", libjpeg) - ("libpng", libpng) - ("libvpx", libvpx) - ("libx264", libx264) - ("libxcomposite", libxcomposite) - ("libxdamage", libxdamage) - ("libxkbfile", libxkbfile) - ("libxrandr", libxrandr) - ("libxtst", libxtst) - ("lzo", lzo) - ("python2-cryptography", python2-cryptography) - ("python2-dbus", python2-dbus) - ("python2-lz4", python2-lz4) - ("python2-lzo", python2-lzo) - ("python2-numpy", python2-numpy) + ("libjpeg" ,libjpeg) + ("libpng" ,libpng) + ("libvpx" ,libvpx) + ("libx264" ,libx264) + ("libxcomposite" ,libxcomposite) + ("libxdamage" ,libxdamage) + ("libxkbfile" ,libxkbfile) + ("libxrandr" ,libxrandr) + ("libxtst" ,libxtst) + ("lzo" ,lzo) + ("python2-cryptography" ,python2-cryptography) + ("python2-dbus" ,python2-dbus) + ("python2-lz4" ,python2-lz4) + ("python2-lzo" ,python2-lzo) + ("python2-netifaces" ,python2-netifaces) + ("python2-numpy" ,python2-numpy) ("python2-pillow" ,python2-pillow) - ("python2-pycairo", python2-pycairo) - ("python2-pycrypto", python2-pycrypto) - ("python2-pygobject", python2-pygobject) - ("python2-pyopengl", python2-pyopengl) - ("python2-pygtk", python2-pygtk) - ("python2-rencode", python2-rencode) - ("xorg-server", xorg-server))) + ("python2-pycairo" ,python2-pycairo) + ("python2-pycrypto" ,python2-pycrypto) + ("python2-pygobject" ,python2-pygobject) + ("python2-pyopengl" ,python2-pyopengl) + ("python2-pyopengl-accelerate" ,python2-pyopengl-accelerate) + ("python2-pygtk" ,python2-pygtk) + ("python2-rencode" ,python2-rencode) + ("xorg-server" ,xorg-server))) (native-inputs `(("pkg-config" ,pkg-config) ("python2-cython", python2-cython))) (arguments `(#:python ,python-2 ;; no full Python 3 support yet #:configure-flags '("--with-tests" "--with-bundle_tests" - "--without-opengl" ;; TODO: pygtkglext needed. "--without-Xdummy" ;; We use Xvfb instead. "--without-Xdummy_wrapper" "--without-strict") |