diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index adb6f4fc8f..672deb6eae 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7246,22 +7246,23 @@ ungapped alignment formats.") (define-public r-systempiper (package (name "r-systempiper") - (version "1.20.0") + (version "1.22.0") (source (origin (method url-fetch) (uri (bioconductor-uri "systemPipeR" version)) (sha256 (base32 - "17r25v9wcglyma2v1c8fka80dm7fx86saxlsb2aprmwi4h3dhb0j")))) + "01ilhlrvy28jfdyxjria4024yryj5zgympgqznw17g3y3az78kk2")))) (properties `((upstream-name . "systemPipeR"))) (build-system r-build-system) (propagated-inputs `(("r-annotate" ,r-annotate) + ("r-assertthat" ,r-assertthat) ("r-batchtools" ,r-batchtools) - ("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) ("r-deseq2" ,r-deseq2) + ("r-dot" ,r-dot) ("r-edger" ,r-edger) ("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicranges" ,r-genomicranges) @@ -7269,13 +7270,18 @@ ungapped alignment formats.") ("r-go-db" ,r-go-db) ("r-gostats" ,r-gostats) ("r-limma" ,r-limma) + ("r-magrittr" ,r-magrittr) ("r-pheatmap" ,r-pheatmap) ("r-rjson" ,r-rjson) ("r-rsamtools" ,r-rsamtools) + ("r-rsvg" ,r-rsvg) ("r-shortread" ,r-shortread) + ("r-stringr" ,r-stringr) ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-yaml" ,r-yaml) ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tgirke/systemPipeR") (synopsis "Next generation sequencing workflow and reporting environment") (description |