diff options
Diffstat (limited to 'gnu')
31 files changed, 602 insertions, 298 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index d2407bb80e..52451b8c38 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -666,7 +666,6 @@ dist_patch_DATA = \ %D%/packages/patches/dropbear-CVE-2018-15599.patch \ %D%/packages/patches/dvd+rw-tools-add-include.patch \ %D%/packages/patches/elfutils-tests-ptrace.patch \ - %D%/packages/patches/elogind-glibc-2.27.patch \ %D%/packages/patches/einstein-build.patch \ %D%/packages/patches/emacs-exec-path.patch \ %D%/packages/patches/emacs-fix-scheme-indent-function.patch \ @@ -1112,6 +1111,8 @@ dist_patch_DATA = \ %D%/packages/patches/python-unittest2-remove-argparse.patch \ %D%/packages/patches/python-waitress-fix-tests.patch \ %D%/packages/patches/qemu-glibc-2.27.patch \ + %D%/packages/patches/qemu-CVE-2018-16847.patch \ + %D%/packages/patches/qemu-CVE-2018-16867.patch \ %D%/packages/patches/qt4-ldflags.patch \ %D%/packages/patches/qtbase-use-TZDIR.patch \ %D%/packages/patches/qtscript-disable-tests.patch \ diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 7b0e24049f..0f19649917 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -139,7 +139,7 @@ solve the shortest vector problem.") (define-public pari-gp (package (name "pari-gp") - (version "2.11.0") + (version "2.11.1") (source (origin (method url-fetch) (uri (string-append @@ -147,7 +147,7 @@ solve the shortest vector problem.") version ".tar.gz")) (sha256 (base32 - "18f9yj8ffn3dxignbxj1x36771zbxy4js0r18mv6831ymb6cld9q")))) + "1jfax92jpydjd02fwl30r6b8kfzqqd6sm4yx94gidyz9lqjb7a94")))) (build-system gnu-build-system) (native-inputs `(("texlive" ,texlive-tiny))) (inputs `(("gmp" ,gmp) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 026527cd36..e17c53675c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4024,6 +4024,14 @@ sequences).") "src/mash/CommandScreen.cpp") (("^#include \"kseq\\.h\"") "#include \"htslib/kseq.h\"")) + #t)) + (add-after 'fix-includes 'use-c++14 + (lambda _ + ;; capnproto 0.7 requires c++14 to build + (substitute* "configure.ac" + (("c\\+\\+11") "c++14")) + (substitute* "Makefile.in" + (("c\\+\\+11") "c++14")) #t))))) (native-inputs `(("autoconf" ,autoconf) @@ -12957,7 +12965,7 @@ once. This package provides tools to perform Drop-seq analyses.") (define-public pigx-rnaseq (package (name "pigx-rnaseq") - (version "0.0.4") + (version "0.0.5") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" @@ -12965,7 +12973,7 @@ once. This package provides tools to perform Drop-seq analyses.") "/pigx_rnaseq-" version ".tar.gz")) (sha256 (base32 - "16gla23rmziimqan7w494q0nr7vfbp42zzkrl9fracmr4k7b1kzr")))) + "05gn658zpj9xki5dbs728z9zxq1mcm25hkwr5vzwqxsfi15l5f2l")))) (build-system gnu-build-system) (arguments `(#:parallel-tests? #f ; not supported @@ -12981,7 +12989,7 @@ once. This package provides tools to perform Drop-seq analyses.") #t))))) (inputs `(("gzip" ,gzip) - ("snakemake" ,snakemake-4) + ("snakemake" ,snakemake) ("fastqc" ,fastqc) ("multiqc" ,multiqc) ("star" ,star) diff --git a/gnu/packages/calendar.scm b/gnu/packages/calendar.scm index 24e19b472c..a5c677bd4d 100644 --- a/gnu/packages/calendar.scm +++ b/gnu/packages/calendar.scm @@ -128,7 +128,9 @@ data units.") ;; running in a TTY: ;; https://github.com/pimutils/khal/issues/683 "not test_printics_read_from_stdin " - "and not test_import_from_stdin"))))))) + "and not test_import_from_stdin " + ;; https://github.com/pimutils/khal/issues/825 + "and not test_description_and_location_and_categories"))))))) (native-inputs `(("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov) diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index d7b35834fe..0fa6d451ed 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -2868,6 +2868,14 @@ transforms idiomatic python function calls to well-formed SQL queries.") (delete-file-recursively "src/github.com/mongodb/mongo-tools/vendor") #t)) + (add-after 'delete-bundled-source-code 'patch-source + (lambda _ + ;; Remove a redundant argument that causes compilation to fail. + (substitute* + "src/github.com/mongodb/mongo-tools/mongorestore/filepath.go" + (("skipping restore of system.profile collection\", db)") + "skipping restore of system.profile collection\")")) + #t)) ;; We don't need to install the source code for end-user applications (delete 'install-source) (replace 'build diff --git a/gnu/packages/dictionaries.scm b/gnu/packages/dictionaries.scm index 3d58589e5e..039ec45965 100644 --- a/gnu/packages/dictionaries.scm +++ b/gnu/packages/dictionaries.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2017, 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr> +;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -22,22 +23,29 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages dictionaries) - #:use-module (guix licenses) + #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix build-system gnu) #:use-module (guix build-system python) #:use-module (guix build-system trivial) #:use-module (gnu packages) + #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages curl) #:use-module (gnu packages emacs) + #:use-module (gnu packages flex) #:use-module (gnu packages fribidi) #:use-module (gnu packages linux) + #:use-module (gnu packages pcre) + #:use-module (gnu packages pkg-config) + #:use-module (gnu packages python) #:use-module (gnu packages readline) #:use-module (gnu packages texinfo) #:use-module (gnu packages compression) - #:use-module (gnu packages tcl)) + #:use-module (gnu packages tcl) + #:use-module (gnu packages xml)) (define-public vera @@ -87,7 +95,7 @@ (description "V.E.R.A. (Virtual Entity of Relevant Acronyms) is a list of computing acronyms distributed as an info document.") - (license fdl1.3+))) + (license license:fdl1.3+))) (define-public gcide (package @@ -125,7 +133,7 @@ acronyms distributed as an info document.") be used via the GNU Dico program or accessed online at http://gcide.gnu.org.ua/") (home-page "http://gcide.gnu.org.ua/") - (license gpl3+))) + (license license:gpl3+))) (define-public diction ;; Not quite a dictionary, not quite a spell checker either… @@ -147,7 +155,7 @@ Diction is used to identify wordy and commonly misused phrases in a body of text. Style instead analyzes surface aspects of a written work, such as sentence length and other readability measures.") (home-page "https://www.gnu.org/software/diction/") - (license gpl3+))) + (license license:gpl3+))) (define-public ding (package @@ -207,7 +215,7 @@ work, such as sentence length and other readability measures.") (description "Ding is a dictionary lookup program for the X window system. It comes with a German-English dictionary with approximately 270,000 entries.") (home-page "http://www-user.tu-chemnitz.de/~fri/ding/") - (license gpl2+))) + (license license:gpl2+))) (define-public grammalecte (package @@ -234,7 +242,7 @@ a dubious expression is wrong, it will keep silent. The package provides the command line interface, along with a server and a Python library.") - (license gpl3+))) + (license license:gpl3+))) (define-public translate-shell (package @@ -283,4 +291,87 @@ and a Python library.") translator powered by Google Translate (default), Bing Translator, Yandex.Translate and Apertium. It gives you easy access to one of these translation engines from your terminal.") - (license public-domain))) + (license license:public-domain))) + +(define-public lttoolbox + (package + (name "lttoolbox") + (version "3.5.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/apertium/lttoolbox/releases/download/v" + version "/lttoolbox-" version ".tar.gz")) + (sha256 + (base32 + "08y6pf1hl7prwygy1g8h6ndqww18pmb9f3r5988q0pcrp8w6xz6b")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (inputs + `(("libxml2" ,libxml2))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://wiki.apertium.org/wiki/Lttoolbox") + (synopsis "Lexical processing toolbox") + (description "Lttoolbox is a toolbox for lexical processing, morphological +analysis and generation of words. Analysis is the process of splitting a +word (e.g. cats) into its lemma \"cat\" and the grammatical information +@code{<n><pl>}. Generation is the opposite process.") + (license (list license:gpl2 ; main license + license:expat)))) ; utf8/* + +(define-public apertium + (package + (name "apertium") + (version "3.5.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/apertium/apertium/releases/download/v" + version "/apertium-" version ".tar.gz")) + (sha256 + (base32 + "0lrx58ipx2kzh1pd3xm1viz05dqyrq38jbnj9dnk92c9ckkwkp4h")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (inputs + `(("libxml2" ,libxml2) + ("libxslt" ,libxslt) + ("lttoolbox" ,lttoolbox) + ("pcre" ,pcre))) + (native-inputs + `(("apertium-get" + ,(origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/apertium/apertium-get") + (commit "692d030e68008fc123089cf2446070fe8c6e3a3b"))) + (sha256 + (base32 + "0kgp68azvds7yjwfz57z8sa5094fyk5yr0qxzblrw7bisrrihnav")))) + ("flex" ,flex) + ("pkg-config" ,pkg-config) + ;; python is only required for running the test suite + ("python-minimal" ,python-minimal))) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; If apertium-get does not exist in the source tree, the build tries + ;; to download it using an svn checkout. To avoid this, copy + ;; apertium-get into the source tree. + (add-after 'unpack 'unpack-apertium-get + (lambda* (#:key inputs #:allow-other-keys) + (copy-recursively (assoc-ref inputs "apertium-get") + "apertium/apertium-get") + #t))))) + (home-page "https://www.apertium.org/") + (synopsis "Rule based machine translation system") + (description "Apertium is a rule based machine translation system +featuring a shallow-transfer machine translation engine. The design of the +system makes translations fast (translating tens of thousands of words per +second on ordinary desktop computers) and, in spite of the errors, reasonably +intelligible and easily correctable.") + (license (list license:gpl2 ; main license + license:expat)))) ; utf8/* diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index 59bef9a8d1..ea2e65a588 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -37,13 +37,13 @@ (define-public python-django (package (name "python-django") - (version "1.11.15") + (version "1.11.17") (source (origin (method url-fetch) (uri (pypi-uri "Django" version)) (sha256 (base32 - "0h2sl02x2mxr3rl3dy750pzm5kvmx77116fys8rrgw164kc3b0mi")))) + "10xlpm21ll8mgz5py41sz9vrd603qv7an736agbqxkxlyikfx1x7")))) (build-system python-build-system) (arguments '(#:modules ((srfi srfi-1) diff --git a/gnu/packages/freedesktop.scm b/gnu/packages/freedesktop.scm index 293916c4d2..ff74c79f90 100644 --- a/gnu/packages/freedesktop.scm +++ b/gnu/packages/freedesktop.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2017 Brendan Tildesley <brendan.tildesley@openmailbox.org> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz> +;;; Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -227,109 +228,69 @@ the freedesktop.org XDG Base Directory specification.") (define-public elogind (package (name "elogind") - (version "232.4") + (version "239.2") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/elogind/elogind/" - "archive/v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/elogind/elogind") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "1qcxian48z2dj5gfmp7brrngdydqf2jm00f4rjr5sy1myh8fy931")) - (patches (search-patches "elogind-glibc-2.27.patch")) - (modules '((guix build utils))) - (snippet - '(begin - (use-modules (guix build utils)) - (substitute* "Makefile.am" - ;; Avoid validation against DTD because the DTDs for - ;; both doctype 4.2 and 4.5 are needed. - (("XSLTPROC_FLAGS = ") "XSLTPROC_FLAGS = --novalid")) - #t)))) - (build-system gnu-build-system) + "17khwbzqmkfd3hcscs51kzdpvq9p2llm08vbpsdhy9yxgwfzlfa6")))) + (build-system meson-build-system) (arguments - `(#:tests? #f ;FIXME: "make check" in the "po" directory fails. - #:configure-flags - (list (string-append "--with-udevrulesdir=" - (assoc-ref %outputs "out") - "/lib/udev/rules.d") - - ;; Let elogind be its own cgroup controller, rather than relying - ;; on systemd or OpenRC. By default, 'configure' makes an - ;; incorrect guess. - "--with-cgroup-controller=elogind" - - (string-append "--with-rootprefix=" - (assoc-ref %outputs "out")) - (string-append "--with-rootlibexecdir=" - (assoc-ref %outputs "out") - "/libexec/elogind") - ;; These are needed to ensure that lto linking works. - "RANLIB=gcc-ranlib" - "AR=gcc-ar" - "NM=gcc-nm") - #:make-flags '("PKTTYAGENT=/run/current-system/profile/bin/pkttyagent") + `(#:configure-flags + (let* ((out (assoc-ref %outputs "out")) + (sysconf (string-append out "/etc")) + (libexec (string-append out "/libexec/elogind")) + (dbuspolicy (string-append out "/etc/dbus-1/system.d")) + (shepherd (assoc-ref %build-inputs "shepherd")) + (halt-path (string-append shepherd "/sbin/halt")) + (kexec-path "") ;not available in Guix yet + (poweroff-path (string-append shepherd "/sbin/shutdown")) + (reboot-path (string-append shepherd "/sbin/reboot"))) + (list + (string-append "-Drootprefix=" out) + (string-append "-Dsysconfdir=" sysconf) + (string-append "-Drootlibexecdir=" libexec) + (string-append "-Ddbuspolicydir=" dbuspolicy) + (string-append "-Dc_link_args=-Wl,-rpath=" libexec) + (string-append "-Dcpp_link_args=-Wl,-rpath=" libexec) + (string-append "-Dhalt-path=" halt-path) + (string-append "-Dkexec-path=" kexec-path) + (string-append "-Dpoweroff-path=" poweroff-path) + (string-append "-Dreboot-path=" reboot-path) + "-Dcgroup-controller=elogind" + ;; Disable some tests. + "-Dtests=false" + "-Dslow-tests=false")) #:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-locale-header + (add-after 'unpack 'fix-pkttyagent-path (lambda _ - ;; Fix compilation with glibc >= 2.26, which removed xlocale.h. - ;; This can be removed for elogind 234. - (substitute* "src/basic/parse-util.c" - (("xlocale\\.h") "locale.h")) + (substitute* "meson.build" + (("join_paths\\(bindir, 'pkttyagent'\\)") + "'\"/run/current-system/profile/bin/pkttyagent\"'")) #t)) - (replace 'bootstrap + (add-after 'unpack 'change-pid-file-path (lambda _ - (invoke "intltoolize" "--force" "--automake") - (invoke "autoreconf" "-vif"))) - (add-before 'build 'fix-service-file - (lambda* (#:key outputs #:allow-other-keys) - ;; Fix the file name of the 'elogind' binary in the D-Bus - ;; '.service' file. - (substitute* "src/login/org.freedesktop.login1.service" - (("^Exec=.*") - (string-append "Exec=" (assoc-ref %outputs "out") - "/libexec/elogind/elogind\n"))) - #t)) - (add-after 'install 'add-libcap-to-search-path - (lambda* (#:key inputs outputs #:allow-other-keys) - ;; Add a missing '-L' for libcap in libelogind.la. See - ;; <https://lists.gnu.org/archive/html/guix-devel/2017-09/msg00084.html>. - (let ((libcap (assoc-ref inputs "libcap")) - (out (assoc-ref outputs "out"))) - (substitute* (string-append out "/lib/libelogind.la") - (("-lcap") - (string-append "-L" libcap "/lib -lcap"))) - #t))) - (add-after 'unpack 'remove-uaccess-tag - (lambda _ - ;; systemd supports a "uaccess" built-in tag, but eudev currently - ;; doesn't. This leads to eudev warnings that we'd rather not - ;; see, so remove the reference to "uaccess." - (substitute* "src/login/73-seat-late.rules.in" - (("^TAG==\"uaccess\".*" line) - (string-append "# " line "\n"))) + (substitute* "src/login/elogind.c" + (("\"/run/elogind.pid\"") "\"/run/systemd/elogind.pid\"")) #t))))) (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ("libtool" ,libtool) - ("intltool" ,intltool) - ("gettext" ,gettext-minimal) - ("python" ,python) + `(("docbook-xml" ,docbook-xml) + ("docbook-xml-4.2" ,docbook-xml-4.2) ("docbook-xsl" ,docbook-xsl) - ("docbook-xml" ,docbook-xml) - ("xsltproc" ,libxslt) - ("m4" ,m4) + ("gettext" ,gettext-minimal) + ("gperf" ,gperf) ("libxml2" ,libxml2) ;for XML_CATALOG_FILES + ("m4" ,m4) ("pkg-config" ,pkg-config) - - ;; Use gperf 3.0 to work around - ;; <https://github.com/wingo/elogind/issues/8>. - ("gperf" ,gperf-3.0))) + ("python" ,python) + ("xsltproc" ,libxslt))) (inputs `(("linux-pam" ,linux-pam) - ("linux-libre-headers" ,linux-libre-headers) ("libcap" ,libcap) ("shepherd" ,shepherd) ;for 'halt' and 'reboot', invoked ;when pressing the power button diff --git a/gnu/packages/ftp.scm b/gnu/packages/ftp.scm index b9c6d209b8..dd8af33972 100644 --- a/gnu/packages/ftp.scm +++ b/gnu/packages/ftp.scm @@ -170,7 +170,7 @@ as required.") (define-public libfilezilla (package (name "libfilezilla") - (version "0.14.0") + (version "0.15.1") (source (origin (method url-fetch) @@ -178,11 +178,13 @@ as required.") name "/" name "-" version ".tar.bz2")) (sha256 (base32 - "15cfz98asypf9rfybv4c6kx8nk3wak7qlm1azldc0gd1nqm4xqvz")))) + "17zlhw5b1a7jzh50cbpy2is3sps5lnzch5yf9qm7mwrviw9c8j10")))) (build-system gnu-build-system) (native-inputs `(("cppunit" ,cppunit) ("pkg-config" ,pkg-config))) + (inputs + `(("nettle" ,nettle))) (home-page "https://lib.filezilla-project.org") (synopsis "Cross-platform C++ library used by Filezilla client") (description @@ -207,14 +209,14 @@ output. (define-public filezilla (package (name "filezilla") - (version "3.37.4") + (version "3.39.0") (source (origin (method url-fetch) (uri (string-append "https://download.filezilla-project.org/client/" "FileZilla_" version "_src.tar.bz2")) (sha256 - (base32 "169wy7ilsh518mcinkjmr6m0kzxbzchmc9mivf5c9b4zp1w4gg3i")))) + (base32 "0ks42q6mi3qx85zpa98izkyficv2bdh3jnvmy97xjnjyfy9mwlgv")))) (build-system gnu-build-system) (arguments ;; Don't let filezilla phone home to check for updates. diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index b497b965bc..fe3c8b86ae 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -31,6 +31,7 @@ ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2018 Jovany Leandro G.C <bit4bit@riseup.net> ;;; Copyright © 2018 Vasile Dumitrascu <va511e@yahoo.com> +;;; Copyright © 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -95,6 +96,7 @@ #:use-module (gnu packages polkit) #:use-module (gnu packages popt) #:use-module (gnu packages ghostscript) + #:use-module (gnu packages inkscape) #:use-module (gnu packages ibus) #:use-module (gnu packages iso-codes) #:use-module (gnu packages libcanberra) @@ -151,6 +153,7 @@ #:use-module (gnu packages version-control) #:use-module (gnu packages virtualization) #:use-module (gnu packages vpn) + #:use-module (gnu packages web) #:use-module (gnu packages xorg) #:use-module (ice-9 match) #:use-module (srfi srfi-1)) @@ -6435,15 +6438,16 @@ functionality and behavior.") (define-public arc-theme (package (name "arc-theme") - (version "20170302") + (version "20181022") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/horst3180/arc-theme" - "/archive/" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/NicoHood/arc-theme.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0igxpngnkf1wpsg872a9jg3c9f5z8afm312yfbillz16mk8w39cw")))) + "08951dk1irfadwpr3p323a4fprmxg53rk2r2niwq3v62ryhi3663")))) (build-system gnu-build-system) (arguments '(#:phases @@ -6454,16 +6458,20 @@ functionality and behavior.") (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) - ("pkg-config" ,pkg-config))) - (inputs - `(("gtk+" ,gtk+))) + ("glib" ,glib "bin") ; for glib-compile-resources + ("gnome-shell" ,gnome-shell) + ("gtk+" ,gtk+) + ("inkscape" ,inkscape) + ("optipng" ,optipng) + ("pkg-config" ,pkg-config) + ("sassc" ,sassc))) (synopsis "A flat GTK+ theme with transparent elements") (description "Arc is a flat theme with transparent elements for GTK 3, GTK 2, and GNOME Shell which supports GTK 3 and GTK 2 based desktop environments like GNOME, Unity, Budgie, Pantheon, XFCE, Mate, etc.") (home-page "https://github.com/horst3180/arc-theme") ;; No "or later" language found. - (license license:gpl3))) + (license license:gpl3+))) (define-public faba-icon-theme (package diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm index 60890bf724..6c970700a5 100644 --- a/gnu/packages/golang.scm +++ b/gnu/packages/golang.scm @@ -632,7 +632,16 @@ way of specifying command line options.") "1sv15sri99szkdz1bkh0ir46w9n8prrwx5hfai13nrhkawfyfy10")))) (build-system go-build-system) (arguments - '(#:import-path "gopkg.in/tomb.v2")) + '(#:import-path "gopkg.in/tomb.v2" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda _ + ;; Add a missing % to fix the compilation of this test + (substitute* "src/gopkg.in/tomb.v2/tomb_test.go" + (("t.Fatalf\\(`Killf\\(\"BO%s") + "t.Fatalf(`Killf(\"BO%%s")) + #t))))) (synopsis "@code{tomb} handles clean goroutine tracking and termination") (description "The @code{tomb} package handles clean goroutine tracking and diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 9d61734f34..12c0033196 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -400,8 +400,8 @@ It has been modified to remove all non-free binary blobs.") ;; supports qemu "virt" machine and possibly a large number of ARM boards. ;; See : https://wiki.debian.org/DebianKernel/ARMMP. -(define %linux-libre-version "4.19.6") -(define %linux-libre-hash "1ybi878li06algbv2pdwn81jlh038pfvzz3axn1bzic9p4c9rjhf") +(define %linux-libre-version "4.19.7") +(define %linux-libre-hash "1fj038hz6b7g9gdiw9kggydryf8dvrdsfn81snns9bn5b01yp67n") (define %linux-libre-4.19-patches (list %boot-logo-patch @@ -423,8 +423,8 @@ It has been modified to remove all non-free binary blobs.") #:patches %linux-libre-4.19-patches #:configuration-file kernel-config)) -(define %linux-libre-4.14-version "4.14.85") -(define %linux-libre-4.14-hash "1jh11y6jakkp3xlq9jbf2myfjzbccjx1iyhd6ny7r9cjkv6r5i5i") +(define %linux-libre-4.14-version "4.14.86") +(define %linux-libre-4.14-hash "1w98drq4ns2awwrbbkd6vy9fh219w8bfjfni5zndfycs5yh5hg65") (define-public linux-libre-4.14 (make-linux-libre %linux-libre-4.14-version @@ -433,8 +433,8 @@ It has been modified to remove all non-free binary blobs.") #:configuration-file kernel-config)) (define-public linux-libre-4.9 - (make-linux-libre "4.9.142" - "0a7c41m41p83byn68cfixq460sy73ahwcx9y3xm6cv05grqza8zh" + (make-linux-libre "4.9.143" + "0vg6hs7vc09riyki8lyy73p3ghl6k9q4xfv7dals4s9q61i6b6d6" %intel-compatible-systems #:configuration-file kernel-config)) @@ -4049,7 +4049,7 @@ under OpenGL graphics workloads.") (define-public efivar (package (name "efivar") - (version "35") + (version "37") (source (origin (method url-fetch) (uri (string-append "https://github.com/rhboot/" name @@ -4057,7 +4057,7 @@ under OpenGL graphics workloads.") "-" version ".tar.bz2")) (sha256 (base32 - "153k2ifyl4giz5fkryxhz8z621diqjy7v25hfga4z94rs32ks0qy")))) + "17vvfivhsrszh7q39b6npjsrhrhsjf1cmmcpp3xrh6wh7ywzwrrw")))) (build-system gnu-build-system) (arguments `(;; Tests require a UEFI system and is not detected in the chroot. diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm index 5e8b6fdd3d..120d0d5e17 100644 --- a/gnu/packages/lisp.scm +++ b/gnu/packages/lisp.scm @@ -11,6 +11,7 @@ ;;; Copyright © 2018 Benjamin Slade <slade@jnanam.net> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz> +;;; Copyright © 2018 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -928,9 +929,9 @@ from other CLXes around the net.") `(("sbcl-cl-ppcre" ,sbcl-cl-ppcre) ("sbcl-cl-unicode" ,sbcl-cl-unicode))))) -(define-public sbcl-stumpwm +(define-public stumpwm (package - (name "sbcl-stumpwm") + (name "stumpwm") (version "18.05") (source (origin (method url-fetch) @@ -946,7 +947,8 @@ from other CLXes around the net.") ("alexandria" ,sbcl-alexandria))) (outputs '("out" "lib")) (arguments - '(#:phases + '(#:asd-system-name "stumpwm" + #:phases (modify-phases %standard-phases (add-after 'create-symlinks 'build-program (lambda* (#:key outputs #:allow-other-keys) @@ -979,17 +981,15 @@ for input. These design decisions reflect the growing popularity of productive, customizable lisp based systems.") (home-page "https://github.com/stumpwm/stumpwm") (license license:gpl2+) - (properties `((ecl-variant . ,(delay ecl-stumpwm)))))) + (properties `((cl-source-variant . ,(delay cl-stumpwm)))))) -(define-public cl-stumpwm - (sbcl-package->cl-source-package sbcl-stumpwm)) +(define-public sbcl-stumpwm + (deprecated-package "sbcl-stumpwm" stumpwm)) -(define-public ecl-stumpwm - (let ((base (sbcl-package->ecl-package sbcl-stumpwm))) - (package - (inherit base) - (outputs '("out")) - (arguments '())))) +(define-public cl-stumpwm + (package + (inherit (sbcl-package->cl-source-package stumpwm)) + (name "cl-stumpwm"))) ;; The slynk that users expect to install includes all of slynk's contrib ;; modules. Therefore, we build the base module and all contribs first; then @@ -1268,16 +1268,16 @@ multiple inspectors with independent history.") paths) #t))))))) -(define-public sbcl-stumpwm+slynk +(define-public stumpwm+slynk (package - (inherit sbcl-stumpwm) - (name "sbcl-stumpwm-with-slynk") + (inherit stumpwm) + (name "stumpwm-with-slynk") (outputs '("out")) (inputs - `(("stumpwm" ,sbcl-stumpwm "lib") + `(("stumpwm" ,stumpwm "lib") ("slynk" ,sbcl-slynk))) (arguments - (substitute-keyword-arguments (package-arguments sbcl-stumpwm) + (substitute-keyword-arguments (package-arguments stumpwm) ((#:phases phases) `(modify-phases ,phases (replace 'build-program @@ -1301,6 +1301,9 @@ multiple inspectors with independent history.") (delete 'cleanup) (delete 'create-symlinks))))))) +(define-public sbcl-stumpwm+slynk + (deprecated-package "sbcl-stumpwm-with-slynk" stumpwm+slynk)) + (define-public sbcl-parse-js (let ((commit "fbadc6029bec7039602abfc06c73bb52970998f6") (revision "1")) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index e88b315946..261d1f013d 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017 Kyle Meyer <kyle@kyleam.com> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2017 Rene Saavedra <rennes@openmailbox.org> +;;; Copyright © 2017, 2018 Rene Saavedra <pacoon@protonmail.com> ;;; Copyright © 2018 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com> @@ -2424,15 +2424,15 @@ tools and applications: (define-public balsa (package (name "balsa") - (version "2.5.3") + (version "2.5.6") (source (origin (method url-fetch) - (uri (string-append "https://pawsa.fedorapeople.org/balsa/balsa-" - version ".tar.bz2")) + (uri (string-append "https://pawsa.fedorapeople.org/balsa/" + name "-" version ".tar.bz2")) (sha256 (base32 - "15jkwp3ylbwd8iha4dr37z1xb6mkk31ym90vv3h2a5xk2rmym5mq")))) + "17k6wcsl8gki7cskr3hhmfj6n54rha8ca3b6fzd8blsl5shsankx")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/mp3.scm b/gnu/packages/mp3.scm index c9effbafa3..c7736eeb51 100644 --- a/gnu/packages/mp3.scm +++ b/gnu/packages/mp3.scm @@ -470,13 +470,13 @@ compression format (.mpc files).") (define-public eyed3 (package (name "eyed3") - (version "0.8.7") + (version "0.8.8") (source (origin (method url-fetch) (uri (pypi-uri "eyeD3" version)) (sha256 (base32 - "1fzqy6hkg73xvpapdjrdzr3r0fsamnplvjfl7dz7rzgzx2r4x4pg")))) + "197lszkyzm377ym5r0ssryfsiz20yjx8y4rii3wc81n92d1qzlaq")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; the required test data contains copyrighted material. diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index b59f258ae5..2314fdc442 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -2704,6 +2704,12 @@ Songs can be searched by artist, name or even by a part of the song text.") (lambda _ (setenv "HOME" (string-append (getcwd) "/tmp")) #t)) + (add-after 'unpack 'make-python3.7-compatible + (lambda _ + ;; See <https://github.com/beetbox/beets/issues/2978>. + (substitute* "beets/autotag/hooks.py" + (("re\\._pattern_type") "re.Pattern")) + #t)) (replace 'check (lambda _ (invoke "nosetests" "-v")))))) diff --git a/gnu/packages/patches/elogind-glibc-2.27.patch b/gnu/packages/patches/elogind-glibc-2.27.patch deleted file mode 100644 index 4ade587b5e..0000000000 --- a/gnu/packages/patches/elogind-glibc-2.27.patch +++ /dev/null @@ -1,22 +0,0 @@ -Look for memfd_create in sys/mman.h instead of linux/memfd.h. -Needed to build with glibc-2.27. - ---- a/configure.ac 1969-12-31 19:00:00.000000000 -0500 -+++ b/configure.ac 2018-03-27 23:54:15.414589005 -0400 -@@ -360,7 +360,7 @@ - # ------------------------------------------------------------------------------ - - AC_CHECK_HEADERS([sys/capability.h], [], [AC_MSG_ERROR([*** POSIX caps headers not found])]) --AC_CHECK_HEADERS([linux/memfd.h], [], []) -+AC_CHECK_HEADERS([sys/mman.h], [], []) - - AC_CHECK_HEADERS([printf.h], [have_printf_h=yes], [have_printf_h=no]) - AS_IF([test x$have_printf_h = xyes], [ -@@ -395,6 +395,7 @@ - [], [], [[ - #include <sys/types.h> - #include <unistd.h> -+#include <sys/mman.h> - #include <sys/mount.h> - #include <fcntl.h> - #include <sched.h> diff --git a/gnu/packages/patches/qemu-CVE-2018-16847.patch b/gnu/packages/patches/qemu-CVE-2018-16847.patch new file mode 100644 index 0000000000..c76bdf764a --- /dev/null +++ b/gnu/packages/patches/qemu-CVE-2018-16847.patch @@ -0,0 +1,158 @@ +Fix CVE-2018-16847: + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-16847 + +Patch copied from upstream source repository: + +https://git.qemu.org/?p=qemu.git;a=commitdiff;h=87ad860c622cc8f8916b5232bd8728c08f938fce + +From 87ad860c622cc8f8916b5232bd8728c08f938fce Mon Sep 17 00:00:00 2001 +From: Paolo Bonzini <pbonzini@redhat.com> +Date: Tue, 20 Nov 2018 19:41:48 +0100 +Subject: [PATCH] nvme: fix out-of-bounds access to the CMB +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +Because the CMB BAR has a min_access_size of 2, if you read the last +byte it will try to memcpy *2* bytes from n->cmbuf, causing an off-by-one +error. This is CVE-2018-16847. + +Another way to fix this might be to register the CMB as a RAM memory +region, which would also be more efficient. However, that might be a +change for big-endian machines; I didn't think this through and I don't +know how real hardware works. Add a basic testcase for the CMB in case +somebody does this change later on. + +Cc: Keith Busch <keith.busch@intel.com> +Cc: qemu-block@nongnu.org +Reported-by: Li Qiang <liq3ea@gmail.com> +Reviewed-by: Li Qiang <liq3ea@gmail.com> +Tested-by: Li Qiang <liq3ea@gmail.com> +Signed-off-by: Paolo Bonzini <pbonzini@redhat.com> +Reviewed-by: Philippe Mathieu-Daudé <philmd@redhat.com> +Tested-by: Philippe Mathieu-Daudé <philmd@redhat.com> +Signed-off-by: Kevin Wolf <kwolf@redhat.com> +--- + hw/block/nvme.c | 2 +- + tests/Makefile.include | 2 +- + tests/nvme-test.c | 68 +++++++++++++++++++++++++++++++++++------- + 3 files changed, 60 insertions(+), 12 deletions(-) + +diff --git a/hw/block/nvme.c b/hw/block/nvme.c +index 28d284346dd..8c35cab2b43 100644 +--- a/hw/block/nvme.c ++++ b/hw/block/nvme.c +@@ -1201,7 +1201,7 @@ static const MemoryRegionOps nvme_cmb_ops = { + .write = nvme_cmb_write, + .endianness = DEVICE_LITTLE_ENDIAN, + .impl = { +- .min_access_size = 2, ++ .min_access_size = 1, + .max_access_size = 8, + }, + }; +diff --git a/tests/Makefile.include b/tests/Makefile.include +index 613242bc6ef..fb0b449c02a 100644 +--- a/tests/Makefile.include ++++ b/tests/Makefile.include +@@ -730,7 +730,7 @@ tests/test-hmp$(EXESUF): tests/test-hmp.o + tests/machine-none-test$(EXESUF): tests/machine-none-test.o + tests/drive_del-test$(EXESUF): tests/drive_del-test.o $(libqos-virtio-obj-y) + tests/qdev-monitor-test$(EXESUF): tests/qdev-monitor-test.o $(libqos-pc-obj-y) +-tests/nvme-test$(EXESUF): tests/nvme-test.o ++tests/nvme-test$(EXESUF): tests/nvme-test.o $(libqos-pc-obj-y) + tests/pvpanic-test$(EXESUF): tests/pvpanic-test.o + tests/i82801b11-test$(EXESUF): tests/i82801b11-test.o + tests/ac97-test$(EXESUF): tests/ac97-test.o +diff --git a/tests/nvme-test.c b/tests/nvme-test.c +index 7674a446e4f..2700ba838aa 100644 +--- a/tests/nvme-test.c ++++ b/tests/nvme-test.c +@@ -8,25 +8,73 @@ + */ + + #include "qemu/osdep.h" ++#include "qemu/units.h" + #include "libqtest.h" ++#include "libqos/libqos-pc.h" ++ ++static QOSState *qnvme_start(const char *extra_opts) ++{ ++ QOSState *qs; ++ const char *arch = qtest_get_arch(); ++ const char *cmd = "-drive id=drv0,if=none,file=null-co://,format=raw " ++ "-device nvme,addr=0x4.0,serial=foo,drive=drv0 %s"; ++ ++ if (strcmp(arch, "i386") == 0 || strcmp(arch, "x86_64") == 0) { ++ qs = qtest_pc_boot(cmd, extra_opts ? : ""); ++ global_qtest = qs->qts; ++ return qs; ++ } ++ ++ g_printerr("nvme tests are only available on x86\n"); ++ exit(EXIT_FAILURE); ++} ++ ++static void qnvme_stop(QOSState *qs) ++{ ++ qtest_shutdown(qs); ++} + +-/* Tests only initialization so far. TODO: Replace with functional tests */ + static void nop(void) + { ++ QOSState *qs; ++ ++ qs = qnvme_start(NULL); ++ qnvme_stop(qs); + } + +-int main(int argc, char **argv) ++static void nvmetest_cmb_test(void) + { +- int ret; ++ const int cmb_bar_size = 2 * MiB; ++ QOSState *qs; ++ QPCIDevice *pdev; ++ QPCIBar bar; + +- g_test_init(&argc, &argv, NULL); +- qtest_add_func("/nvme/nop", nop); ++ qs = qnvme_start("-global nvme.cmb_size_mb=2"); ++ pdev = qpci_device_find(qs->pcibus, QPCI_DEVFN(4,0)); ++ g_assert(pdev != NULL); ++ ++ qpci_device_enable(pdev); ++ bar = qpci_iomap(pdev, 2, NULL); ++ ++ qpci_io_writel(pdev, bar, 0, 0xccbbaa99); ++ g_assert_cmpint(qpci_io_readb(pdev, bar, 0), ==, 0x99); ++ g_assert_cmpint(qpci_io_readw(pdev, bar, 0), ==, 0xaa99); ++ ++ /* Test partially out-of-bounds accesses. */ ++ qpci_io_writel(pdev, bar, cmb_bar_size - 1, 0x44332211); ++ g_assert_cmpint(qpci_io_readb(pdev, bar, cmb_bar_size - 1), ==, 0x11); ++ g_assert_cmpint(qpci_io_readw(pdev, bar, cmb_bar_size - 1), !=, 0x2211); ++ g_assert_cmpint(qpci_io_readl(pdev, bar, cmb_bar_size - 1), !=, 0x44332211); ++ g_free(pdev); + +- qtest_start("-drive id=drv0,if=none,file=null-co://,format=raw " +- "-device nvme,drive=drv0,serial=foo"); +- ret = g_test_run(); ++ qnvme_stop(qs); ++} + +- qtest_end(); ++int main(int argc, char **argv) ++{ ++ g_test_init(&argc, &argv, NULL); ++ qtest_add_func("/nvme/nop", nop); ++ qtest_add_func("/nvme/cmb_test", nvmetest_cmb_test); + +- return ret; ++ return g_test_run(); + } +-- +2.19.2 + diff --git a/gnu/packages/patches/qemu-CVE-2018-16867.patch b/gnu/packages/patches/qemu-CVE-2018-16867.patch new file mode 100644 index 0000000000..1403d8e0f8 --- /dev/null +++ b/gnu/packages/patches/qemu-CVE-2018-16867.patch @@ -0,0 +1,49 @@ +Fix CVE-2018-16867: + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-16867 +https://seclists.org/oss-sec/2018/q4/202 + +Patch copied from upstream source repository: + +https://git.qemu.org/?p=qemu.git;a=commitdiff;h=c52d46e041b42bb1ee6f692e00a0abe37a9659f6 + +From c52d46e041b42bb1ee6f692e00a0abe37a9659f6 Mon Sep 17 00:00:00 2001 +From: Gerd Hoffmann <kraxel@redhat.com> +Date: Mon, 3 Dec 2018 11:10:45 +0100 +Subject: [PATCH] usb-mtp: outlaw slashes in filenames +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +Slash is unix directory separator, so they are not allowed in filenames. +Note this also stops the classic escape via "../". + +Fixes: CVE-2018-16867 +Reported-by: Michael Hanselmann <public@hansmi.ch> +Signed-off-by: Gerd Hoffmann <kraxel@redhat.com> +Reviewed-by: Philippe Mathieu-Daudé <philmd@redhat.com> +Message-id: 20181203101045.27976-3-kraxel@redhat.com +--- + hw/usb/dev-mtp.c | 6 ++++++ + 1 file changed, 6 insertions(+) + +diff --git a/hw/usb/dev-mtp.c b/hw/usb/dev-mtp.c +index 0f6a9702ef1..100b7171f4e 100644 +--- a/hw/usb/dev-mtp.c ++++ b/hw/usb/dev-mtp.c +@@ -1719,6 +1719,12 @@ static void usb_mtp_write_metadata(MTPState *s) + + filename = utf16_to_str(dataset->length, dataset->filename); + ++ if (strchr(filename, '/')) { ++ usb_mtp_queue_result(s, RES_PARAMETER_NOT_SUPPORTED, d->trans, ++ 0, 0, 0, 0); ++ return; ++ } ++ + o = usb_mtp_object_lookup_name(p, filename, dataset->length); + if (o != NULL) { + next_handle = o->handle; +-- +2.19.2 + diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index 65d7b26df3..4170e4a0ae 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -12,7 +12,7 @@ ;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2017, 2018 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com> -;;; Copyright © 2017 Rene Saavedra <rennes@openmailbox.org> +;;; Copyright © 2017, 2018 Rene Saavedra <pacoon@protonmail.com> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. @@ -1001,7 +1001,7 @@ PDF. Indeed @command{pdfposter} was inspired by @command{poster}.") (define-public pdfgrep (package (name "pdfgrep") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) @@ -1009,7 +1009,7 @@ PDF. Indeed @command{pdfposter} was inspired by @command{poster}.") name "-" version ".tar.gz")) (sha256 (base32 - "02qcl5kmr5qzjfc99qpbpfb1890bxlrq3r208gnding51zrmb09c")))) + "1fia10djcxxl7n9jw2prargw4yzbykk6izig2443ycj9syhxrwqf")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) diff --git a/gnu/packages/regex.scm b/gnu/packages/regex.scm index c05d819d65..08501aef6f 100644 --- a/gnu/packages/regex.scm +++ b/gnu/packages/regex.scm @@ -23,21 +23,22 @@ #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix build-system gnu) #:use-module (guix utils)) (define-public re2 (package (name "re2") - (version "2018-10-01") + (version "2018-12-01") (home-page "https://github.com/google/re2") (source (origin - (method url-fetch) - (uri (string-append home-page "/archive/" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference (url home-page) (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "10fsxsj3yip34hp2zl5rw8h2x2lgnp83fwrh7m0qfd9m99qrf4x3")))) + "181fq0idwzgfmmpyhmqdxi37rbynzgf1b8s99aaka9kqs9ffwj22")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build gnu-build-system) diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 2fde016851..52832eeeb8 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -3010,7 +3010,15 @@ a native C extension.") (lambda _ ;; Regenerate gemspec so loosened dependency constraints are ;; propagated. - (invoke "rake" "gemspec")))))) + (invoke "rake" "gemspec"))) + (add-after 'regenerate-gemspec 'fix-json-java.gemspec + (lambda _ + ;; This gemspec doesn't look to be generated by the above + ;; command, so patch it separately. + (substitute* "json-java.gemspec" + (("%q<test-unit>\\.freeze, \\[\"~> 2\\.0\"\\]") + "%q<test-unit>.freeze, [\">= 2.0\"]")) + #t))))) (native-inputs `(("bundler" ,bundler) ("ragel" ,ragel) diff --git a/gnu/packages/samba.scm b/gnu/packages/samba.scm index b927bbbf9b..fd9bdd9724 100644 --- a/gnu/packages/samba.scm +++ b/gnu/packages/samba.scm @@ -32,20 +32,23 @@ #:use-module (gnu packages acl) #:use-module (gnu packages admin) #:use-module (gnu packages autotools) + #:use-module (gnu packages backup) #:use-module (gnu packages check) #:use-module (gnu packages crypto) #:use-module (gnu packages cups) #:use-module (gnu packages databases) #:use-module (gnu packages docbook) - #:use-module (gnu packages tls) - #:use-module (gnu packages popt) - #:use-module (gnu packages pkg-config) - #:use-module (gnu packages openldap) - #:use-module (gnu packages readline) + #:use-module (gnu packages gnupg) #:use-module (gnu packages kerberos) #:use-module (gnu packages linux) + #:use-module (gnu packages openldap) #:use-module (gnu packages perl) + #:use-module (gnu packages pkg-config) + #:use-module (gnu packages popt) #:use-module (gnu packages python) + #:use-module (gnu packages readline) + #:use-module (gnu packages tls) + #:use-module (gnu packages web) #:use-module (gnu packages xml)) (define-public cifs-utils @@ -147,14 +150,14 @@ anywhere.") (define-public samba (package (name "samba") - (version "4.8.6") + (version "4.9.3") (source (origin (method url-fetch) (uri (string-append "https://download.samba.org/pub/samba/stable/" "samba-" version ".tar.gz")) (sha256 (base32 - "15hawqdm37l6lp9k14c634315p77cllsx89bvbw9h38fg1hj3fbk")))) + "1krm47x08c0vcrq12dxs8mbicma1ck2sl1i0hgkvrmwsgrqdi3yg")))) (build-system gnu-build-system) (arguments `(#:phases @@ -199,10 +202,14 @@ anywhere.") `(("acl" ,acl) ("cups" ,cups) ;; ("gamin" ,gamin) + ("gpgme" ,gpgme) ("gnutls" ,gnutls) ("iniparser" ,iniparser) + ("jansson" ,jansson) ("libaio" ,libaio) + ("libarchive" ,libarchive) ("linux-pam" ,linux-pam) + ("lmdb" ,lmdb) ("openldap" ,openldap) ("popt" ,popt) ("readline" ,readline) @@ -338,14 +345,14 @@ many event types, including timers, signals, and the classic file descriptor eve (define-public ldb (package (name "ldb") - (version "1.3.6") + (version "1.4.3") (source (origin (method url-fetch) (uri (string-append "https://www.samba.org/ftp/ldb/ldb-" version ".tar.gz")) (sha256 (base32 - "16lkz3gyvsm9als1wyimsl573hclr72xy6454mshwjanncs33lji")) + "07vacwr941y2x31yl9knsr2rpffz5pqabvqds6sbyngqxy4r785c")) (modules '((guix build utils))) (snippet '(begin @@ -358,7 +365,10 @@ many event types, including timers, signals, and the classic file descriptor eve #t)))) (build-system gnu-build-system) (arguments - '(#:phases + '(;; LMDB is only supported on 64-bit systems, yet the test suite + ;; requires it. + #:tests? (assoc-ref %build-inputs "lmdb") + #:phases (modify-phases %standard-phases (replace 'configure ;; ldb use a custom configuration script that runs waf. @@ -378,7 +388,10 @@ many event types, including timers, signals, and the classic file descriptor eve `(("talloc" ,talloc) ("tdb" ,tdb))) (inputs - `(("popt" ,popt) + `(,@(if (target-64bit?) + `(("lmdb" ,lmdb)) + '()) + ("popt" ,popt) ("tevent" ,tevent))) (synopsis "LDAP-like embedded database") (home-page "https://ldb.samba.org/") diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm index 2df0ce1364..2d61f7451b 100644 --- a/gnu/packages/serialization.scm +++ b/gnu/packages/serialization.scm @@ -306,7 +306,7 @@ it a convenient format to store user input files.") (define-public capnproto (package (name "capnproto") - (version "0.6.1") + (version "0.7.0") (source (origin (method url-fetch) (uri (string-append @@ -314,7 +314,7 @@ it a convenient format to store user input files.") version ".tar.gz")) (sha256 (base32 - "010s9yhq4531wvdfrdf2477zswhck6cjfby79w73rff3v06090l0")))) + "0hfdnhlbskagzgvby8wy6lrxj53zfzpfqimbhga68c0ji2yw1969")))) (build-system gnu-build-system) (arguments `(#:phases @@ -324,6 +324,14 @@ it a convenient format to store user input files.") ;; Workaround for test that tries to resolve port name from ;; /etc/services, which is not present in build environment. (substitute* "src/kj/async-io-test.c++" ((":http") ":80")) + #t)) + (add-before 'check 'use-tmp-for-tempory-files + (lambda _ + ;; Use /tmp for tempory files, as the default /var/tmp directory + ;; doesn't exist. + (substitute* "src/kj/filesystem-disk-test.c++" + (("VAR\\_TMP \"/var/tmp\"") + "VAR_TMP \"/tmp\"")) #t))))) (home-page "https://capnproto.org") (synopsis "Capability-based RPC and serialization system") diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm index c29c88a588..5222354e74 100644 --- a/gnu/packages/syncthing.scm +++ b/gnu/packages/syncthing.scm @@ -30,7 +30,7 @@ (define-public syncthing (package (name "syncthing") - (version "0.14.52") + (version "0.14.54") (source (origin (method url-fetch) (uri (string-append "https://github.com/syncthing/syncthing" @@ -38,12 +38,19 @@ "/syncthing-source-v" version ".tar.gz")) (sha256 (base32 - "1hhn72l74vb9l32i1a54ry2l85ji78cq6isd20lxxdk0bjqc4m29")) - (modules '((guix build utils))) - ;; Delete bundled ("vendored") free software source code. - (snippet '(begin - (delete-file-recursively "vendor") - #t)))) + "1pfjckwsrhy8lbmy42fawgh1gcfmjbh3dfxx05w5yjxnpd1g2z6r")) + ;; Since the update to Go 1.11, Go programs have been keeping + ;; spurious references to all their dependencies: + ;; <https://bugs.gnu.org/33620>. + ;; For Syncthing, this increases the size of the 'out' closure + ;; from 87.6 MiB to 253.5 MiB. So, we use the bundled + ;; dependencies until the bug is resolved. +; (modules '((guix build utils))) +; ;; Delete bundled ("vendored") free software source code. +; (snippet '(begin +; (delete-file-recursively "vendor") +; #t)) + )) (build-system go-build-system) ;; The primary Syncthing executable goes to "out", while the auxiliary ;; server programs and utility tools go to "utils". This reduces the size @@ -63,7 +70,7 @@ #t)) (replace 'build - (lambda* (#:key inputs #:allow-other-keys) + (lambda _ (with-directory-excursion "src/github.com/syncthing/syncthing" (invoke "go" "run" "build.go" "-no-upgrade")))) @@ -107,48 +114,6 @@ (delete-file (string-append out man "/man1/strelaysrv.1")) (delete-file (string-append utils man "/man1/syncthing.1")) #t)))))) - ;; When updating Syncthing, check 'vendor/manifest' in the source - ;; distribution to ensure we are using the correct versions of these - ;; dependencies. - (inputs - `(("go-github-com-audriusbutkevicius-cli" - ,go-github-com-audriusbutkevicius-cli) - ("go-github-com-audriusbutkevicius-go-nat-pmp" - ,go-github-com-audriusbutkevicius-go-nat-pmp) - ("go-github-com-audriusbutkevicius-pfilter" - ,go-github-com-audriusbutkevicius-pfilter) - ("go-github-com-bkaradzic-go-lz4" ,go-github-com-bkaradzic-go-lz4) - ("go-github-com-calmh-du" ,go-github-com-calmh-du) - ("go-github-com-calmh-xdr" ,go-github-com-calmh-xdr) - ("go-github-com-prometheus-union" ,(go-github-com-prometheus-union)) - ("go-github-com-chmduquesne-rollinghash-adler32" - ,go-github-com-chmduquesne-rollinghash-adler32) - ("go-github-com-gobwas-glob" ,go-github-com-gobwas-glob) - ("go-github-com-gogo-protobuf-union" - ,(go-github-com-gogo-protobuf-union)) - ("go-github-com-golang-groupcache-lru" - ,go-github-com-golang-groupcache-lru) - ("go-github-com-jackpal-gateway" ,go-github-com-jackpal-gateway) - ("go-github-com-kballard-go-shellquote" - ,go-github-com-kballard-go-shellquote) - ("go-github-com-lib-pq" ,go-github-com-lib-pq) - ("go-github-com-minio-sha256-simd" ,go-github-com-minio-sha256-simd) - ("go-github-com-oschwald-geoip2-golang" - ,go-github-com-oschwald-geoip2-golang) - ("go-github-com-pkg-errors" ,go-github-com-pkg-errors) - ("go-github-com-rcrowley-go-metrics" ,go-github-com-rcrowley-go-metrics) - ("go-github-com-sasha-s-go-deadlock" ,go-github-com-sasha-s-go-deadlock) - ("go-github-com-syncthing-notify" ,go-github-com-syncthing-notify) - ("go-github-com-syndtr-goleveldb" ,go-github-com-syndtr-goleveldb) - ("go-github-com-thejerf-suture" ,go-github-com-thejerf-suture) - ("go-github-com-vitrun-qart" ,(go-github-com-vitrun-qart-union)) - ("go-golang-org-x-crypto" ,(go-golang-org-x-crypto-union)) - ("go-golang-org-x-net-union" ,(go-golang-org-x-net-union)) - ("go-golang-org-x-text" ,(go-golang-org-x-text-union)) - ("go-golang-org-x-time-rate" ,go-golang-org-x-time-rate) - ("go-gopkg.in-ldap.v2" ,go-gopkg.in-ldap.v2) - ;; For tests - ("go-github-com-d4l3k-messagediff" ,go-github-com-d4l3k-messagediff))) (synopsis "Decentralized continuous file system synchronization") (description "Syncthing is a peer-to-peer file synchronization tool that supports a wide variety of computing platforms. It uses the Block Exchange @@ -941,8 +906,8 @@ using sh's word-splitting rules.") (license expat)))) (define-public go-github-com-syncthing-notify - (let ((commit "b76b45868a77e7800dd06cce61101af9c4274bcc") - (revision "2")) + (let ((commit "116c45bb5ad48777321e4984d1320d56889b6097") + (revision "3")) (package (name "go-github-com-syncthing-notify") (version (git-version "0.0.0" revision commit)) @@ -954,7 +919,7 @@ using sh's word-splitting rules.") (file-name (git-file-name name version)) (sha256 (base32 - "1xxkzaxygxxr51i2kdxsdaqb5i95hqpkw4kcr75wmsp914slw2q9")))) + "14bh95pkhwmnc65bnv08p3y4flj1j7f6xxr2cgmlwrphnlp9yhl9")))) (build-system go-build-system) (arguments '(#:import-path "github.com/syncthing/notify")) @@ -1188,11 +1153,11 @@ server tools for Prometheus metrics.") (license asl2.0)))) (define-public go-github-com-client-golang-prometheus - (let ((commit "180b8fdc22b4ea7750bcb43c925277654a1ea2f3") + (let ((commit "7e9098b20fb8e103a7a5691878272d7e3d703663") (revision "0")) (package (name "go-github-com-prometheus-client-golang-prometheus") - (version (git-version "0.0.0" revision commit)) + (version (git-version "0.9.1" revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -1201,11 +1166,12 @@ server tools for Prometheus metrics.") (file-name (git-file-name name version)) (sha256 (base32 - "1kkfx1j9ka18ydsmdi2cdy3hs39c22b39mbc4laykmj2x93lmbdp")))) + "09q8hlvgyn58hn8fmmj535hrwhqc1215czwzf7fhaqpa9zamj4w1")))) (build-system go-build-system) (arguments '(#:import-path "github.com/prometheus/client_golang/prometheus" - #:unpack-path "github.com/prometheus/client_golang")) + #:unpack-path "github.com/prometheus/client_golang" + #:tests? #f)) ; 'TestHandler' test fails in this non-critical dependency (propagated-inputs `(("go-github-com-beorn7-perks-quantile" ,go-github-com-beorn7-perks-quantile) diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm index 01c68d2e35..d9971441c6 100644 --- a/gnu/packages/tls.scm +++ b/gnu/packages/tls.scm @@ -826,7 +826,7 @@ then ported to the GNU / Linux environment.") (define-public mbedtls-apache (package (name "mbedtls-apache") - (version "2.14.0") + (version "2.14.1") (source (origin (method url-fetch) @@ -836,7 +836,7 @@ then ported to the GNU / Linux environment.") version "-apache.tgz")) (sha256 (base32 - "0bf8mf8w5dyikbwpckcxgdi0l086adk7pailqds10bkzrcg59y42")))) + "07f6xn77w5rd6fhq5s1dmna3czs4chk5j2s6wkj366cvikawp2gi")))) (build-system cmake-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index 2f8e541d40..0502bb38c4 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -100,6 +100,8 @@ (method url-fetch) (uri (string-append "https://download.qemu.org/qemu-" version ".tar.xz")) + (patches (search-patches "qemu-CVE-2018-16847.patch" + "qemu-CVE-2018-16867.patch")) (sha256 (base32 "04sp3f1gp4bdb913jf7fw761njaqp2l32wgipp1sapmxx17zcyld")))) diff --git a/gnu/packages/web-browsers.scm b/gnu/packages/web-browsers.scm index 578cfca560..6caa486b84 100644 --- a/gnu/packages/web-browsers.scm +++ b/gnu/packages/web-browsers.scm @@ -364,45 +364,44 @@ driven and does not detract you from your daily work.") (license license:gpl3+))) (define-public next-gtk-webkit - (let ((commit "b8899341bbdefd0a33412608fbb0b1f92f818c65")) - (package - (name "next-gtk-webkit") - (version (git-version "1.0.0" "1" commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://source.atlas.engineer/public/next") - (commit commit))) - (sha256 - (base32 - "12jmf1b9qr85il9h15mb9vpsfh1wzcln9x9xpn4lps0kkccnpkz9")) - (file-name (git-file-name "next" version)))) - (build-system glib-or-gtk-build-system) - (arguments - `(#:tests? #f ; no tests - #:make-flags (list "gtk-webkit" - "CC=gcc" - (string-append "PREFIX=" %output)) - #:phases - (modify-phases %standard-phases - (delete 'configure) - (replace 'install - (lambda* (#:key (make-flags '()) #:allow-other-keys) - (apply invoke "make" "install-gtk-webkit" make-flags)))))) - (inputs - `(("glib-networking" ,glib-networking) - ("gsettings-desktop-schemas" ,gsettings-desktop-schemas) - ("webkitgtk" ,webkitgtk))) - (native-inputs - `(("pkg-config" ,pkg-config))) - (home-page "https://next.atlas.engineer") - (synopsis "Infinitely extensible web-browser (user interface only)") - (description "Next is a keyboard-oriented, extensible web-browser + (package + (name "next-gtk-webkit") + (version "1.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://source.atlas.engineer/public/next") + (commit version))) + (sha256 + (base32 + "00xi01r6gxlrv7xc2dhf4da30y0vng1snbdmc8d829qyn0chl55q")) + (file-name (git-file-name "next" version)))) + (build-system glib-or-gtk-build-system) + (arguments + `(#:tests? #f ; no tests + #:make-flags (list "gtk-webkit" + "CC=gcc" + (string-append "PREFIX=" %output)) + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda* (#:key (make-flags '()) #:allow-other-keys) + (apply invoke "make" "install-gtk-webkit" make-flags)))))) + (inputs + `(("glib-networking" ,glib-networking) + ("gsettings-desktop-schemas" ,gsettings-desktop-schemas) + ("webkitgtk" ,webkitgtk))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://next.atlas.engineer") + (synopsis "Infinitely extensible web-browser (user interface only)") + (description "Next is a keyboard-oriented, extensible web-browser inspired by Emacs and designed for power users. The application has familiar key-bindings, is fully configurable and extensible in Lisp, and has powerful features for productive professionals.") - (license license:bsd-3)))) + (license license:bsd-3))) (define-public sbcl-next (package @@ -428,8 +427,6 @@ features for productive professionals.") (define expected-fasl (string-append lib "/lib/sbcl/next--system.fasl")) - (pk actual-fasl) - (pk expected-fasl) (copy-file actual-fasl expected-fasl) #t)) (add-after 'create-symlinks 'build-program @@ -445,6 +442,9 @@ features for productive professionals.") ;; the illegal version will result in NIL in the .desktop ;; file. (lambda* (#:key outputs #:allow-other-keys) + (with-output-to-file "version" + (lambda _ + (format #t "~a" ,(package-version next-gtk-webkit)))) (invoke "make" "install-assets" (string-append "PREFIX=" (assoc-ref outputs "out")))))))) @@ -456,14 +456,12 @@ features for productive professionals.") ("cl-strings" ,sbcl-cl-strings) ("cl-string-match" ,sbcl-cl-string-match) ("puri" ,sbcl-puri) - ("queues.simple-queue" ,sbcl-queues.simple-queue) ("sqlite" ,sbcl-cl-sqlite) ("parenscript" ,sbcl-parenscript) ("cl-json" ,sbcl-cl-json) ("swank" ,sbcl-slime-swank) ("cl-markup" ,sbcl-cl-markup) ("cl-css" ,sbcl-cl-css) - ("usocket" ,sbcl-usocket) ("bordeaux-threads" ,sbcl-bordeaux-threads) ("s-xml-rpc" ,sbcl-s-xml-rpc) ("unix-opts" ,sbcl-unix-opts))) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 750b760362..caf56e4119 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -196,14 +196,14 @@ Interface} specification.") (name "nginx") ;; Consider updating the nginx-documentation package if the nginx package is ;; updated. - (version "1.14.1") + (version "1.14.2") (source (origin (method url-fetch) (uri (string-append "https://nginx.org/download/nginx-" version ".tar.gz")) (sha256 (base32 - "19542jxcjf4dvrqvgb5vr36mhbzcjrxc3v0xh451rm60610rf2dz")))) + "15wppq12qmq8acjs35xfj61czhf9cdc0drnl5mm8hcg3aihryb80")))) (build-system gnu-build-system) (inputs `(("openssl" ,openssl) ("pcre" ,pcre) @@ -1281,12 +1281,14 @@ minimum to provide high performance operation.") #:tests? #f #:phases (modify-phases %standard-phases + (delete 'bootstrap) (delete 'configure) (add-after 'unpack 'unpack-libsass-and-set-path (lambda* (#:key inputs #:allow-other-keys) (invoke "tar" "xvf" (assoc-ref inputs "libsass")) (setenv "SASS_LIBSASS_PATH" - (string-append (getcwd) "/libsass-" ,version))))))) + (string-append (getcwd) "/libsass-" ,version)) + #t))))) (inputs `(("libsass" ,libsass))) (synopsis "CSS pre-processor") diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 3ac01133e5..fd4c3fea2c 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -39,6 +39,7 @@ (define-module (gnu packages xml) #:use-module (gnu packages) #:use-module (gnu packages autotools) + #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages curl) #:use-module (gnu packages gnupg) @@ -2152,3 +2153,24 @@ It converts the procedure call into an XML document, sends it to a remote server using HTTP, and gets back the response as XML. This library provides a modular implementation of XML-RPC for C and C++.") (license (list license:psfl license:expat)))) + +(define-public python-xmltodict + (package + (name "python-xmltodict") + (version "0.11.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xmltodict" version)) + (sha256 + (base32 + "1pxh4yjhvmxi1h6f92skv41g4kbsws3ams57150kzn18m907v3cg")))) + (build-system python-build-system) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-nose" ,python-nose))) + (home-page "https://github.com/martinblech/xmltodict") + (synopsis "Work with XML like you are working with JSON") + (description "This package provides a Python library to convert XML to +@code{OrderedDict}.") + (license license:expat))) diff --git a/gnu/tests/desktop.scm b/gnu/tests/desktop.scm index be64c4e7e5..6aa22fd49b 100644 --- a/gnu/tests/desktop.scm +++ b/gnu/tests/desktop.scm @@ -50,7 +50,7 @@ ;; Log in as root on tty1, and check what 'loginctl' returns. (test-equal "login on tty1" - '(("c1" "0" "root" "seat0" "/dev/tty1") ;session + '(("c1" "0" "root" "seat0" "tty1") ;session ("seat0") ;seat ("0" "root")) ;user |