diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 53 |
1 files changed, 26 insertions, 27 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6dc313199b..76026e7065 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15055,37 +15055,36 @@ neural networks.") (license license:gpl3)))) (define-public fastahack - (let ((commit "c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd")) - (package - (name "fastahack") - (version (git-version "0.0.0" "1" commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/ekg/fastahack/") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0hfdv67l9g611i2ck4l92pd6ygmsp9g1ph4zx1ni7qkpsikf0l19")))) - (build-system gnu-build-system) - (arguments - `(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 - #:phases - (modify-phases %standard-phases - (delete 'configure) ; There is no configure phase. - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) - (install-file "fastahack" bin)) - #t))))) - (home-page "https://github.com/ekg/fastahack") - (synopsis "Indexing and sequence extraction from FASTA files") - (description "Fastahack is a small application for indexing and + (package + (name "fastahack") + (version "1.0.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ekg/fastahack/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0rp1blskhzxf7vbh253ibpxbgl9wwgyzf1wbkxndi08d3j4vcss9")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 + #:phases + (modify-phases %standard-phases + (delete 'configure) ; There is no configure phase. + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (install-file "fastahack" bin)) + #t))))) + (home-page "https://github.com/ekg/fastahack") + (synopsis "Indexing and sequence extraction from FASTA files") + (description "Fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.") - (license (list license:expat license:gpl2))))) + (license (list license:expat license:gpl2)))) (define-public vcflib (let ((commit "5ac091365fdc716cc47cc5410bb97ee5dc2a2c92") |