diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index deb179c4d9..b18c5bf9c2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1742,6 +1742,38 @@ to search for all neighbors within a given distance. Parallelization is achieved for all methods using the BiocParallel framework.") (license license:gpl3))) +(define-public r-biocsingular + (package + (name "r-biocsingular") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BiocSingular" version)) + (sha256 + (base32 + "129z6bkdhm5wlvrjiwrr8yl2jj9chh4i6dm6firlj4c4ql3jp4f5")))) + (properties `((upstream-name . "BiocSingular"))) + (build-system r-build-system) + (propagated-inputs + `(("r-beachmat" ,r-beachmat) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-delayedarray" ,r-delayedarray) + ("r-irlba" ,r-irlba) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rsvd" ,r-rsvd) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://github.com/LTLA/BiocSingular") + (synopsis "Singular value decomposition for Bioconductor packages") + (description + "This package implements exact and approximate methods for singular value +decomposition and principal components analysis, in a framework that allows +them to be easily switched within Bioconductor packages or workflows. Where +possible, parallelization is achieved using the BiocParallel framework.") + (license license:gpl3))) + (define-public r-destiny (package (name "r-destiny") |