diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f6410c3ca4..67f24a6170 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13699,3 +13699,27 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many options), bedgraph, links (represented as arcs), and Hi-C matrices. pyGenomeTracks can make plots with or without Hi-C data.") (license license:gpl3+))) + +(define-public python-hic2cool + (package + (name "python-hic2cool") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hic2cool" version)) + (sha256 + (base32 + "0xy6mhfns2lzib1kcr6419jjp6pmh0qx8z8na55lmiwn0ds8q9cl")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; no tests included + (propagated-inputs + `(("python-cooler" ,python-cooler))) + (home-page "https://github.com/4dn-dcic/hic2cool") + (synopsis "Converter for .hic and .cool files") + (description + "This package provides a converter between @code{.hic} files (from +juicer) and single-resolution or multi-resolution @code{.cool} files (for +cooler). Both @code{hic} and @code{cool} files describe Hi-C contact +matrices.") + (license license:expat))) |