diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4f2d97025a..b60c5d8ef2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1116,6 +1116,34 @@ problems in CEL-level data to help evaluate performance of quality metrics.") to streamline the more common analyses that a Biostatistician might see.") (license license:artistic2.0))) +(define-public r-affxparser + (package + (name "r-affxparser") + (version "1.56.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affxparser" version)) + (sha256 + (base32 + "1jv7k9pn4c7szi3ma2f2xsd58pkrkvjpk5wra73r6kc607qgrv33")))) + (properties `((upstream-name . "affxparser"))) + (build-system r-build-system) + (home-page "https://github.com/HenrikBengtsson/affxparser") + (synopsis "Affymetrix File Parsing SDK") + (description + "This is a package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, +BAR). It provides methods for fast and memory efficient parsing of Affymetrix +files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files +are supported. Currently, there are methods for reading @dfn{chip definition +file} (CDF) and a @dfn{cell intensity file} (CEL). These files can be read +either in full or in part. For example, probe signals from a few probesets +can be extracted very quickly from a set of CEL files into a convenient list +structure.") + ;; The Fusion SDK contains files under GPLv2 and LGPLv2.1. The R code is + ;; under LGPLv2+. + (license (list license:lgpl2.0+ license:lgpl2.1 license:gpl2)))) + (define-public r-annotate (package (name "r-annotate") |