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2021-06-14gnu: Add python-cgatcore.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cgatcore): New variable.
2021-06-14gnu: Add python-ruffus.Ricardo Wurmus
* gnu/packages/python-science.scm (python-ruffus): New variable.
2021-06-14gnu: tor: Update to 0.4.5.9 [security fixes].Tobias Geerinckx-Rice
This release fixes CVE-2021-34548, CVE-2021-34550, and TROVE-2021-004. * gnu/packages/tor.scm (tor): Update to 0.4.5.9.
2021-06-14gnu: wxmaxima: Update to 21.05.2.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 21.05.2.
2021-06-14gnu: maxima: Update to 5.45.0.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.45.0.
2021-06-14gnu: julia-scratch: Update to 1.1.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-scratch): Update to 1.1.0.
2021-06-14gnu: julia-reexport: Update to 1.1.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-reexport): Update to 1.1.0.
2021-06-14gnu: julia-pdmats: Update to 0.11.1.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-pdmats): Update to 0.11.1.
2021-06-14gnu: julia-offsetarrays: Update to 1.9.2.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.9.2.
2021-06-14gnu: julia-iocapture: Update to 0.2.2.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-iocapture): Update to 0.2.2.
2021-06-14gnu: julia-ffmpeg: Update to 0.4.1.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-ffmpeg): Update to 0.4.1.
2021-06-14gnu: julia-docstringextensions: Update to 0.8.5.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-docstringextensions): Update to 0.8.5.
2021-06-14gnu: julia-compat: Update to 3.30.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.30.0.
2021-06-14gnu: julia-adapt: Update to 3.3.1.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-adapt): Update to 3.3.1.
2021-06-14gnu: julia-unitful: Update to 1.8.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.8.0.
2021-06-14hg-download: Make (guix swh) output visible.Ludovic Courtès
* guix/hg-download.scm (hg-fetch)[build]: Add 'setvbuf' calls.
2021-06-14hg-download: Support falling back to SWH.Xinglu Chen
* guix/hg-download.scm (hg-fetch): Fall back to fetching the source from SWH if the upstream source is missing. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-14swh: Support lookup of Hg tags.Xinglu Chen
* guix/swh.scm (lookup-origin-revision): Support lookup of Hg tags, not just Git tags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-14services: Remove deprecated service procedures.Ludovic Courtès
These service procedures were deprecated in January 2019, for instance in commit 65a67bf711b14bc7200f6730c0f173375ca12974. * gnu/services/avahi.scm (avahi-service): Remove. * gnu/services/base.scm (console-keymap, guix-service) (guix-publish-service, gpm-service, urandom-seed-service): Remove. * gnu/services/desktop.scm (upower-service, colord-service): Remove. * gnu/services/mcron.scm (mcron-service): Remove. * gnu/services/messaging.scm (bitlbee-service): Remove. * gnu/services/networking.scm (dhcp-client-service, ntp-service) (tor-service): Remove. * gnu/services/xorg.scm (slim-service, gdm-service): Remove.
2021-06-14gnu: hwloc: Update to 2.5.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2): Update to 2.5.0.
2021-06-14gnu: gcc-8: Make static libs reproducibleCarl Dong
This fixes the nonreproducibility in gcc documented here: https://reproducible-builds.org/docs/archives/#gnu-libtool * gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gcc.scm (gcc-8)[source]: Apply it.
2021-06-14gnu: Add irods-client-icommands.Ricardo Wurmus
* gnu/packages/irods.scm (irods-client-icommands): New variable.
2021-06-14gnu: Add irods.Ricardo Wurmus
* gnu/packages/irods.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-06-14gnu: Add avro-cpp-1.9-for-irods.Ricardo Wurmus
* gnu/packages/serialization.scm (avro-cpp-1.9-for-irods): New variable.
2021-06-14gnu: Add fmt-for-irods.Ricardo Wurmus
* gnu/packages/pretty-print.scm (fmt-for-irods): New variable.
2021-06-14gnu: Add nanodbc-for-irods.Ricardo Wurmus
* gnu/packages/databases.scm (nanodbc-for-irods): New variable.
2021-06-14gnu: Add snappy-with-clang6.Ricardo Wurmus
* gnu/packages/compression.scm (snappy-with-clang6): New variable.
2021-06-14gnu: Add boost-for-irods.Ricardo Wurmus
* gnu/packages/boost.scm (boost-for-irods): New variable.
2021-06-14gnu: julia-static: Update to 0.2.5.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.2.5.
2021-06-14gnu: julia-weakrefstrings: Update to 1.0.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): Update to 1.0.0. [propagated-inputs]: Add julia-parsers.
2021-06-14gnu: Add julia-referencetests.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-referencetests): New variable.
2021-06-14gnu: Add julia-imagemagick.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagemagick): New variable.
2021-06-14gnu: Add julia-imageinterminal.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imageinterminal): New variable.
2021-06-14gnu: Add julia-imagetransformations.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagetransformations): New variable.
2021-06-14gnu: Add julia-interpolations.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-interpolations): New variable.
2021-06-14gnu: Add julia-coordinatetransformations.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-coordinatetransformations): New variable.
2021-06-14gnu: Add julia-imageshow.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imageshow): New variable.
2021-06-14gnu: Add julia-imagebase.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagebase): New variable.
2021-06-14gnu: Add julia-imagemetadata.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagemetadata): New variable.
2021-06-14gnu: Add julia-imageaxes.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imageaxes): New variable.
2021-06-14gnu: Add julia-imagecore.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagecore): New variable.
2021-06-14gnu: Add julia-mosaicviews.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-mosaicviews): New variable.
2021-06-14gnu: Add julia-stackviews.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-stackviews): New variable.
2021-06-14gnu: Add julia-nlsolversbase.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-nlsolversbase): New variable.
2021-06-14gnu: Add julia-recursivearraytools.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-recursivearraytools): New variable.
2021-06-14gnu: Add julia-finitediff.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-finitediff): New variable.
2021-06-14gnu: Add julia-positivefactorizations.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-positivefactorizations): New variable.
2021-06-14gnu: Add julia-reversediff.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-reversediff): New variable.
2021-06-14gnu: Add julia-functionwrappers.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-functionwrappers): New variable.
2021-06-14gnu: Add julia-recipespipeline.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-recipespipeline): New variable.
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