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2019-03-21gnu: r-permute: Update to 0.9-5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-permute): Update to 0.9-5.
2019-03-21gnu: r-matrix: Update to 1.2-16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-16.
2019-03-21gnu: qtractor: Update to 0.9.6.Ricardo Wurmus
* gnu/packages/music.scm (qtractor): Update to 0.9.6.
2019-03-21gnu: r-ape: Update to 5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ape): Update to 5.3.
2019-03-21gnu: r-maldiquant: Update to 1.19.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2.
2019-03-21gnu: Add r-libcoin.Ricardo Wurmus
* gnu/packages/cran.scm (r-libcoin): New variable.
2019-03-21gnu: r-callr: Update to 3.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 3.2.0.
2019-03-21gnu: r-dendextend: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): Update to 1.10.0.
2019-03-21gnu: r-sys: Update to 3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sys): Update to 3.1.
2019-03-21gnu: r-diversitree: Fix typo.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo in package labels.
2019-03-21gnu: Add r-insight.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): New variable.
2019-03-20gnu: blender: Restore version 2.79b for systems without OpenGL 3.Mark H Weaver
Fixes <https://bugs.gnu.org/33882>. * gnu/packages/graphics.scm (blender-2.79): New variable. (blender)[description]: Remove obsolete claim that the stable release no longer works in Guix. * gnu/packages/patches/blender-2.79-newer-ffmpeg.patch, gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2019-03-20gnu: r-annotationhub: Update to 2.14.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
2019-03-20gnu: r-genomicfeatures: Update to 1.34.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
2019-03-20gnu: r-variantannotation: Update to 1.28.13.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
2019-03-20gnu: r-category: Update to 2.48.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
2019-03-20gnu: r-dexseq: Update to 1.28.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
2019-03-20gnu: r-annotate: Update to 1.60.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
2019-03-20gnu: guile-wm: Compile and use canonical directories.Ricardo Wurmus
Fixes <https://bugs.gnu.org/34922>. * gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory" phase to "set-module-directory"; change "set-load-path" phase to wrap executable in the correct environment variables; add phase "install-go-files".
2019-03-20gnu: obs: Update to 23.0.2.Tobias Geerinckx-Rice
* gnu/packages/video.scm (obs): Update to 23.0.2.
2019-03-20gnu: perl-plack-middleware-methodoverride: Update to 0.20.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
2019-03-20gnu: perl-uri-template: Update to 0.24.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-uri-template): Update to 0.24.
2019-03-20gnu: mkfontscale: Update to 1.2.0.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
2019-03-20gnu: xf86-video-ati: Update to 19.0.1.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
2019-03-20gnu: xf86-video-amdgpu: Update to 19.0.1.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
2019-03-20gnu: pencil2d: Update to 0.6.3.Tobias Geerinckx-Rice
* gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
2019-03-20gnu: python-colorspacious: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-03-20gnu: linux-libre: Update to 5.0.3.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3. (%linux-libre-hash): Update hash.
2019-03-20gnu: linux-libre@4.19: Update to 4.19.30.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30. (%linux-libre-4.19-hash): Update hash.
2019-03-20gnu: linux-libre@4.14: Update to 4.14.107.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107. (%linux-libre-4.14-hash): Update hash.
2019-03-20gnu: linux-libre@4.9: Update to 4.9.164.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
2019-03-20services: Add nslcd-service-type.Ricardo Wurmus
* gnu/services/authentication.scm (nslcd-service-type, nslcd-configuration, %nslcd-accounts): New variables. (uglify-field-name, value->string, serialize-field, serialize-list, ssl-option?, tls-reqcert-option?, deref-option?, comma-separated-list-of-strings?, serialize-ignore-users-option, log-option?, serialize-log-option, valid-map?, scope-option?, serialize-scope-option, map-entry?, list-of-map-entries?, filter-entry?, list-of-filter-entries?, serialize-filter-entry, serialize-list-of-filter-entries, serialize-map-entry, serialize-list-of-map-entries, nslcd-config-file, nslcd-etc-service, nslcd-shepherd-service, pam-ldap-pam-services, pam-ldap-pam-service, generate-nslcd-documentation): New procedures. * gnu/tests/ldap.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (LDAP Services): Document it.
2019-03-20gnu: samba: Update to 4.10.0.Rutger Helling
* gnu/packages/samba.scm (samba): Update to 4.10.0. [native-inputs]: Replace python-2 with python.
2019-03-20gnu: xpra: Update to 2.5.Rutger Helling
* gnu/packages/xorg.scm (xpra): Update to 2.5.
2019-03-20gnu: iproute2: Update to 5.0.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (iproute): Update to 5.0.0. [inputs, native-inputs]: Order alphabetically.
2019-03-20gnu: 389-ds-base: Use more global directories.Ricardo Wurmus
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass "with-instconfigdir"; add phase "overwrite-default-locations" to overwrite defaults for "initconfig_dir", the certificate location, and the location of the defaults file.
2019-03-20gnu: 389-ds-base: Fix tool references.Ricardo Wurmus
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase "fix-includes" to "fix-references" and fix references to certutil and c_rehash. [inputs]: Add nss:bin.
2019-03-20gnu: Add adapterremoval.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
2019-03-20gnu: 389-ds-base: Set localstatedir to /var.Ricardo Wurmus
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to /var.
2019-03-20gnu: 389-ds-base: Update to 1.4.0.21.Ricardo Wurmus
* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21. [arguments]: Add phase "fix-includes". [inputs]: Add cracklib.
2019-03-20gnu: emacs-helm-notmuch: Update to 1.2.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
2019-03-20gnu: libinfinity: Update to 0.7.1.Arun Isaac
* gnu/packages/gobby.scm (libinfinity): Update to 0.7.1. [inputs]: Remove gtk+-2. Add gtk+.
2019-03-19gnu: icecat: Update to 60.6.0-guix1 [security-fixes].Mark H Weaver
Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790, CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795, CVE-2019-9796, and CVE-2019-9801. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash.
2019-03-19gnu: icecat: Improve computed 'icecat-source' tarball.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat-source): When packing the new IceCat tarball, set the mtime of archived files to early 1980. Remove useless 'string-append' applied to one argument.
2019-03-20gnu: knot: Update to 2.8.0.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (knot): Update to 2.8.0. [source]: Add patch. * gnu/packages/patches/knot-include-system-lmdb-header.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-03-19gnu: cataclysm-dda: Update to 0.D.nee
* gnu/packages/games.scm (cataclysm-dda): Update to 0.D.
2019-03-19gnu: gandi.cli: Update to 1.4.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (gandi.cli): Update to 1.4.
2019-03-19gnu: python-ipy: Update to 1.00.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (python-ipy): Update to 1.00.
2019-03-19gnu: google-brotli: Update to 1.0.7.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (google-brotli): Update to 1.0.7.
2019-03-19gnu: google-brotli: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (google-brotli)[source]: Use GIT-FETCH and GIT-FILE-NAME.
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