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2021-12-07gnu: fsom: Build with GCC 6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (fsom)[native-inputs]: Add gcc-6. [arguments]: Remove trailing #T.
2021-12-07gnu: python-velocyto: Remove generated C files.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-velocyto)[source]: Remove all generated .c files.
2021-12-07gnu: python-schema-salad: Update to 8.2.20211116214159.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to 8.2.20211116214159. [arguments]: Remove trailing #T. [propagated-inputs]: Replace python-cachecontrol-0.11 with python-cachecontrol. [native-inputs]: Add python-black.
2021-12-07gnu: taxtastic: Update to 0.9.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.9.2. [arguments]: Delete 'sanity-check and 'python37-compatibility phases; adjust 'prepare-directory phase.
2021-12-07gnu: taxtastic: Run tests conditionally.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Respect TESTS? option.
2021-12-07gnu: python-dendropy: Update to 4.5.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.5.1. [arguments]: Skip failing tests.
2021-12-07gnu: python-cooler: Use python-cytoolz-for-cooler.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace python-cytoolz with python-cytoolz-for-cooler.
2021-12-07gnu: Add python-cytoolz-for-cooler.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): New variable.
2021-12-07gnu: python-sparse: Update to 0.13.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-sparse): Update to 0.13.0.
2021-12-07gnu: python-dask: Update to 2021.11.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.11.2. [source]: Fetch from github. [arguments]: Remove phase 'disable-broken-tests.
2021-12-07gnu: python-dask: Run tests conditionally.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Respect TESTS? option.
2021-12-07gnu: python-dask: Add missing input for tests.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask)[native-inputs]: Add python-pytest-rerunfailures.
2021-12-07gnu: phylip: Update to 3.697.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (phylip): Update to 3.697.
2021-12-07gnu: phylip: Pass -fcommon to compiler.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (phylip)[arguments]: Set CFLAGS.
2021-12-07gnu: phylip: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (phylip)[arguments]: Remove trailing #T from build phases.
2021-12-07gnu: subread: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (subread)[arguments]: Remove trailing #T from build phases.
2021-12-07gnu: subread: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (subread): Update to 2.0.3.
2021-12-07gnu: subread: Update home page..Ricardo Wurmus
* gnu/packages/bioinformatics.scm (subread)[home-page]: Use new home page.
2021-12-07gnu: subread: Pass -fcommon to compiler.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (subread)[arguments]: Add -fcommon to flags.
2021-12-07gnu: python-pytest-console-scripts: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-console-scripts): Update to 1.2.1.
2021-12-07gnu: Add python-pytest-rerunfailures.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-rerunfailures): New variable.
2021-12-07gnu: mcl: Add -fcommon to compiler flags.Ricardo Wurmus
* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS.
2021-12-07gnu: python-cytoolz: Update to 0.11.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-cytoolz): Update to 0.11.2. [source]: Add snippet.
2021-12-07gnu: hisat: Update to 0.1.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat): Update to 0.1.6.
2021-12-07gnu: hisat: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove trailing #T from build phase.
2021-12-07gnu: hisat: Remove invalid characters.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove curly quotes.
2021-12-07gnu: crossmap: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.6.1. [source]: Add snippet to remove generated files.
2021-12-07gnu: Remove python2-bx-python.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-bx-python): Delete variable.
2021-12-07gnu: python-bx-python: Update to 0.8.12.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.8.12. [propagated-inputs]: Remove python-six. [arguments]: Remove. Tests are still not run, though.
2021-12-07gnu: Remove pbtranscript-tofu.Ricardo Wurmus
Upstream has disappeared and it depends on Python 2, which is no longer supported. * gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove variable.
2021-12-07gnu: python-pyfit-sne: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyfit-sne): Update to 1.2.1. [arguments]: Disable tests explicitly.
2021-12-06gnu: helm: Fix build with GCC 9 and later.Pierre Langlois
* gnu/packages/music.scm (helm)[origin]: Add patch. * gnu/packages/patches/helm-fix-gcc-9-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2021-12-06gnu: patchwork: Adjust for python-build-system change.Marius Bakke
This is a follow-up to commit db5646d957895944007c1bb44fcd998ea392f168, et.al. * gnu/packages/patchutils.scm (patchwork)[arguments]: Adapt one more site-packages call.
2021-12-06gnu: f-seq: Update name of commons-cli JAR.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Use new name of commons-cli JAR.
2021-12-06gnu: f-seq: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Remove trailing #T from build phase.
2021-12-06gnu: f-seq: Simplify snippet.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (f-seq)[source]: Simplify snippet.
2021-12-06gnu: osinfo-db-next: Fix uri.Mathieu Othacehe
* gnu/packages/virtualization.scm (osinfo-db-next)[source]: Fix URI.
2021-12-06gnu: python-kivy: Add missing dependencies.Ludovic Courtès
* gnu/packages/python-xyz.scm (python-kivy)[arguments]: Add 'set-home' phase. [inputs]: Add PYTHON-DOCUTILS, PYTHON-KIVY-GARDEN, and PYTHON-PYGMENTS. [synopsis, description]: Tweak.
2021-12-06gnu: Add python-kivy-garden.Ludovic Courtès
* gnu/packages/python-xyz.scm (python-kivy-garden): New variable.
2021-12-06gnu: fpm2: Build with '-fcommon'.Ludovic Courtès
* gnu/packages/password-utils.scm (fpm2)[arguments]: Add #:configure-flags.
2021-12-06gnu: xnee: Build with '-fcommon'.Ludovic Courtès
* gnu/packages/xnee.scm (xnee)[arguments]: New field.
2021-12-05gnu: libsoup: Simplify inputs.Ludovic Courtès
Obtained by running "guix style --input-simplification=always" and by using 'modify-inputs' instead of list primitives. * gnu/packages/gnome.scm (libsoup-minimal, libsoup-minimal-2, libsoup): Simplify inputs.
2021-12-05gnu: librsvg: Simplify inputs.Ludovic Courtès
Obtained by running "guix style --input-simplification=always". * gnu/packages/gnome.scm (librsvg, librsvg-2.40): Simplify inputs.
2021-12-05gnu: gtk+: Simplify inputs.Ludovic Courtès
Obtained by running: guix style --input-simplification=always gtk+ gtk+@2 * gnu/packages/gtk.scm (gtk+-2, gtk+): Simplify inputs.
2021-12-05gnu: gtk+@2: Use 'librsvg-for-system'.Ludovic Courtès
* gnu/packages/gtk.scm (gtk+-2)[propagated-inputs]: Use 'librsvg-for-system' unconditionally.
2021-12-05gnu: libsoup: Remove unneeded dependency on PHP.Ludovic Courtès
* gnu/packages/gnome.scm (libsoup-minimal)[native-inputs]: Remove PHP.
2021-12-05gnu: gtk+: Use 'librsvg-for-system'.Ludovic Courtès
This brings back SVG support on non-x86_64 platforms. * gnu/packages/gtk.scm (gtk+)[inputs]: Use 'librsvg-for-system' unconditionally. [arguments]: In 'disable-failing-tests' phase, remove conditional substitutions aimed for non-x86_64 targets lacking librsvg support. * gnu/packages/gnome.scm (libhandy)[arguments]: Likewise, remove 'skip-test-that-requires-svg' phase.
2021-12-05gnu: emacs: Use 'librsvg-for-system'.Ludovic Courtès
* gnu/packages/emacs.scm (emacs)[inputs]: Use 'librsvg-for-system' unconditionally.
2021-12-05gnu: openbox: Use 'librsvg-for-system'.Ludovic Courtès
* gnu/packages/openbox.scm (openbox)[inputs]: Use 'librsvg-for-system' unconditionally.
2021-12-05gnu: mate: Depend on 'librsvg-for-system'.Ludovic Courtès
* gnu/packages/mate.scm (engrampa)[inputs]: Replace LIBRSVG by LIBRSVG-FOR-SYSTEM. (libmatekbd)[inputs]: Likewise. (mate-panel)[inputs]: Likewise. (mate-screensaver)[inputs]: Likewise. (mate-utils)[inputs]: Likewise. (mate-control-center)[inputs]: Likewise. (eom)[inputs]: Likewise, and remove duplicate [license]: Remove unnecessary list.
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-12-22 13:23:43 +0000