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2022-12-22gnu: QEMU: Don't provide --firmwarepath for user-mode binaries.Marius Bakke
* gnu/packages/virtualization.scm (qemu)[arguments]: Remove --firmwarepath from the user-mode emulation configure invocation.
2022-12-22gnu: openvpn: Update to 2.5.8.Efraim Flashner
* gnu/packages/vpn.scm (openvpn): Update to 2.5.8.
2022-12-22gnu: Add r-bedtorch.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bedtorch): New variable.
2022-12-22gnu: Add r-rhtslib12.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib12): New variable.
2022-12-22gnu: Add wiggletools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
2022-12-22gnu: xterm: Update to 377.Efraim Flashner
* gnu/packages/xorg.scm (xterm): Update to 377.
2022-12-21gnu: guile-ssh: Update to 0.16.0.Vagrant Cascadian
* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.0.
2022-12-22gnu: fheroes2: Update to 1.0.0.Andrew Tropin
* gnu/packages/games.scm (fheroes2): Update to 1.0.0.
2022-12-22gnu: Add python-episcanpy.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-episcanpy): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-12-22gnu: Add python-bamnostic.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-bamnostic): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-12-21gnu: Add vembrane.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (vembrane): New variable.
2022-12-21gnu: python-plastid: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Enable tests; add build phases 'unpack-test-data and 'build-extensions. [inputs]: Add openssl. [native-inputs]: Add test data.
2022-12-21gnu: python-pysam: Update to 0.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0. [build-system]: Use pyproject-build-system.
2022-12-21gnu: htslib: Update to 1.16.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib): Update to 1.16.
2022-12-21gnu: pbbam: Use htslib 1.14.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pbbam)[propagated-inputs]: Replace htslib with htslib-1.14.
2022-12-21gnu: Add htslib-1.14.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-1.14): New variable.
2022-12-21gnu: Add ocaml5.0-merlin.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-merlin): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-dot-merlin-reader.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-dot-merlin-reader): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-merlin-lib.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-merlin-lib): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-merlin-lib to 4.7-414.pukkamustard
* gnu/packages/ocaml.scm (ocaml-merlin-lib): Update to 4.7-414. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio-main.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio-main): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio-linux.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio-linux): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-uring.pukkamustard
* gnu/packages/ocaml.scm (ocaml-uring): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio-luv.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio-luv): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: ocaml-mdx: Move inputs to propagated-inputs.pukkamustard
* gnu/packages/ocaml.scm (ocaml-mdx): Move inputs to propagated-inputs. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-bechamel.pukkamustard
* gnu/packages/ocaml.scm (ocaml-bechamel): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-ctypespukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-ctypes): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-lwt-dllist.pukkamustard
* gnu/packages/ocaml.scm (ocaml-lwt-dllist): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-crowbar.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-crowbar): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-odoc to 2.2.0.pukkamustard
* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.2.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-ppx-expect.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-ppx-expect): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-qcheck to 0.20.pukkamustard
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.20. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-ppxlib to 0.25.1.pukkamustard
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.25.1. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-base.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-base): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-hmap.pukkamustard
* gnu/packages/ocaml.scm (ocaml-hmap): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-optint.pukkamustard
* gnu/packages/ocaml.scm (ocaml-optint): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-monolith.pukkamustard
* gnu/packages/ocaml.scm (ocaml-monolith): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-psq.pukkamustard
* gnu/packages/ocaml.scm (ocaml-psq): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: opam: Use OCaml 4.14 compiled version when building OCaml 5.0 packages.pukkamustard
* gnu/packages/ocaml.scm (opam)[properties]: Add ocaml5.0-variant. (opam)[propagated-inputs]: Move to inputs. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21guix: ocaml: Add package-with-ocaml5.0.pukkamustard
* guix/build-system/ocaml.scm (package-with-ocaml5.0) (strip-ocaml5.0-variant): New variables. * gnu/packages/ocaml.scm (ocaml5.0-dune-bootstrap) (ocaml5.0-dune, ocaml5.0-dune-configurator) (ocaml5.0-csexp, ocaml5.0-result): New variables. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-findlibpukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-findlib): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: ocaml-findlib: Update to 1.9.5.pukkamustard
* gnu/packages/ocaml.scm (ocaml-findlib): Update to 1.9.5. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-5.0.pukkamustard
* gnu/packages/ocaml.scm (ocaml-5.0): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21guix system: Skip initrd modules check when using --target.Maxim Cournoyer
* guix/scripts/system.scm (perform-action): Do not call CHECK-INITRD-MODULES when the %current-target-system parameter is set.
2022-12-21gnu: julia-imagemetadata: Update to 0.9.8.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagemetadata): Update to 0.9.8. [arguments]: Add phase to skip greyscale test. [propagated-inputs]: Remove julia-indirectarrays; add julia-imagebase. [native-inputs]: Add julia-indirectarrays.
2022-12-21gnu: julia-paddedviews: Update to 0.5.11.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-paddedviews): Update to 0.5.11.
2022-12-21gnu: julia-imageaxes: Update to 0.6.10.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imageaxes): Update to 0.6.10. [arguments]: Add a phase to skip a greyscale test. [propagated-inputs]: Add julia-imagebase. [native-inputs]: Add julia-aqua and julia-documenter.
2022-12-21gnu: julia-graphics: Update to 1.1.2.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-graphics): Update to 1.1.2.
2022-12-21gnu: julia-axisarrays: Update to 0.4.6.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.6.
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