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2016-10-06gnu: ghc-streaming-commons: Remove standard packages from inputs.Ricardo Wurmus
The "directory" and "transformers" modules are part of GHC and should not be among the inputs to avoid conflicts. * gnu/packages/haskell.scm (ghc-streaming-commons)[inputs]: Remove "ghc-directory" and "ghc-transformers".
2016-10-06gnu: Add r-bsgenome-celegans-ucsc-ce10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New variable.
2016-10-05gnu: nss-certs and nss: Update to 3.27.1.Leo Famulari
* gnu/packages/certs.scm (nss-certs): Update to 3.27.1. * gnu/packages/gnuzilla.scm (nss): Update to 3.27.1.
2016-10-05gnu: e2fsprogs: Fix typo in comment.Leo Famulari
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Fix typo in comment.
2016-10-05gnu: e2fsprogs: Disable parallel build.Leo Famulari
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Add #:parallel-build? #f.
2016-10-05gnu: json-c: Update to 0.12.1.Leo Famulari
* gnu/packages/web.scm (json-c): Update to 0.12.1.
2016-10-05gnu: libxvmc: Fix CVE-2016-7953.Leo Famulari
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxvmc)[replacement]: New field. (libxvmc/fixed): New variable.
2016-10-05gnu: libxv: Fix CVE-2016-5407.Leo Famulari
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxv)[replacement]: New field. (libxv/fixed): New variable.
2016-10-05gnu: libxtst: Fix CVE-2016-{7951,7952}.Leo Famulari
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxtst)[replacement]: New field. (libxtst/fixed): New variable.
2016-10-05gnu: libxrender: Fix CVE-2016-{7949,7950}.Leo Famulari
* gnu/packages/patches/libxrender-CVE-2016-7949.patch, gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (libxrender)[replacement]: New field. (libxrender/fixed): New variable.
2016-10-05gnu: libxrandr: Fix CVE-2016-{7947,7948}.Leo Famulari
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxrandr)[replacement]: New field. (libxrandr/fixed): New variable.
2016-10-05gnu: libxi: Fix CVE-2016-{7945,7946}.Leo Famulari
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxi)[replacement]: New field. (libxi/fixed): New variable.
2016-10-05gnu: libxfixes: Fix CVE-2016-7944.Leo Famulari
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (libxfixes)[replacement]: New field. (libxfixes/fixed): New variable.
2016-10-05gnu: libx11: Fix CVE-2016-{7942,7943}.Leo Famulari
* gnu/packages/patches/libx11-CVE-2016-7942.patch, gnu/packages/patches/libx11-CVE-2016-7943.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (libx11)[replacement]: New field. (libx11/fixed): New variable.
2016-10-05Update e-mail address for ng0.ng0
* .mailmap: Add new entries for ng0.
2016-10-05gnu: Remove lispf4.ng0
The package in its current state is unusable and documentation with unclear licenses is included. Also, the file 'lispf42.c' (and possible others) is generated C code and thus not "source code" as we define it. * gnu/packages/lisp.scm (lispf4): Delete variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-05gnu: btrfs-progs: Update to 4.8.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.
2016-10-05gnu: libass: Update to 0.13.4 [fixes CVE-2016-{7969,7970,7972}.Leo Famulari
* gnu/packages/video.scm (libass): Update to 0.13.4.
2016-10-05gnu: gnucash: Update to 2.6.14.Efraim Flashner
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.14.
2016-10-05gnu: Add sunxi-tools.Danny Milosavljevic
* gnu/packages/admin.scm (sunxi-tools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-05gnu: Add Vc.Leo Famulari
* gnu/packages/maths.scm (vc): New variable.
2016-10-05gnu: wordnet: Make sure the self-reference is visible to the GC.Ludovic Courtès
Before that, "guix gc --references $(guix build wordnet)" would not show WordNet itself, erroneously so. * gnu/packages/wordnet.scm (wordnet)[arguments]: Add -fno-builtin-strcpy to #:configure-flags.
2016-10-05gnu: wordnet: Compile with optimizations.Ludovic Courtès
* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -O2 to #:configure-flags.
2016-10-05gnu: Add hyperrogue.Kei Kebreau
* gnu/packages/games.scm (hyperrogue): New variable.
2016-10-05gnu: grub: Make dependency on mdadm explicit.Ludovic Courtès
* gnu/packages/grub.scm (grub)[arguments]: Path getroot.c in 'patch-stuff' phase. [inputs]: Add MDADM.
2016-10-05gnu: gsl: Disable failing tests on i686.Ludovic Courtès
* gnu/packages/patches/gsl-test-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-05gnu: git: Update to 2.10.1.Leo Famulari
* gnu/packages/version-control.scm (git): Update to 2.10.1.
2016-10-04gnu: guix: Honor the user's 'GUILE_LOAD_PATH'.Ludovic Courtès
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use 'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'.
2016-10-04mapped-devices: Properly open RAID devices.Ludovic Courtès
This fixes a type error introduced in 7f8ad82bf23b032ad6bd85bb1daa87cc83de509c, given that SOURCES is a list. * gnu/system/mapped-devices.scm (open-raid-device): Add 'apply' invocation.
2016-10-04gnu: Add GoAccess.Ludovic Courtès
* gnu/packages/web.scm (goaccess): New variable.
2016-10-04gnu: pies: Update to 1.3.Ludovic Courtès
* gnu/packages/admin.scm (pies): Update to 1.3. [arguments]: New field.
2016-10-04gnu: global: Update to 6.5.5.Ludovic Courtès
* gnu/packages/code.scm (global): Update to 6.5.5.
2016-10-04gnu: gsl: Update to 2.2.1.Ludovic Courtès
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-04gnu: direvent: Update to 5.1.Ludovic Courtès
* gnu/packages/admin.scm (direvent): Update to 5.1. [arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and 'testsuite'.
2016-10-04gnu: gnu-c-manual: Update to 0.2.5.Ludovic Courtès
* gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5.
2016-10-04gnu: rush: Update to 1.8.Ludovic Courtès
* gnu/packages/rush.scm (rush): Update to 1.8. [source]: Remove 'patches'. * gnu/packages/patches/cpio-gets-undeclared.patch, gnu/packages/patches/rush-CVE-2013-6889.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-10-04Set Emacs config variable sentence-end-double-space.Hartmut Goebel
Users using a non-English environment may have set this to `nil´, which leads to fill-paragraph removing the second space. * .dir-locals.el: Set sentence-end-double-space to true. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-04gnu: cryptsetup: Update to 1.7.2.Leo Famulari
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2. [source]: Use kernel mirror. [home-page]: Update URL.
2016-10-04gnu: metabat: Update to 0.32.4-1.cbdca756.Ben Woodcroft
* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756. * gnu/packages/patches/metabat-remove-compilation-date.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-10-04gnu: fish: Do not use the bundled PCRE2.Ludovic Courtès
* gnu/packages/shells.scm (fish)[inputs]: Add PCRE2.
2016-10-04gnu: fish: Add input bc.Arun Isaac
Fixes <http://bugs.gnu.org/24433>. * gnu/packages/shells.scm (fish)[inputs]: Add bc. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-04gnu: warzone2100: Update to 3.2.1.Ricardo Wurmus
* gnu/packages/games.scm (warzone2100): Update to 3.2.1. [arguments]: Remove phase "set-sdl-paths", add phase "link-tests-with-qt", add phase "remove-reference-to-missing-file". [inputs]: Replace "qt-4" with "qt", replace "sdl-union" with "sdl2", add "openssl".
2016-10-04gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".Ricardo Wurmus
* gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move "build-gemspec" phase after "unpack".
2016-10-04gnu: python-pathlib: Disable tests.Ricardo Wurmus
* gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests.
2016-10-04gnu: ghmm: Run tests after install.Ricardo Wurmus
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check" phase after "install"; add phase "fix-PYTHONPATH".
2016-10-04gnu: raincat: Add missing input.Ricardo Wurmus
* gnu/packages/games.scm (raincat)[inputs]: Add freeglut.
2016-10-04gnu: supertux: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/games.scm (supertux): Update to 0.5.0. [arguments]: Add flag to disable static boost libraries.
2016-10-03gnu: parallel: Update to 20160922.Leo Famulari
* gnu/packages/parallel.scm (parallel): Update to 20160922.
2016-10-03gnu: linux-libre: Update to 4.8.Mark H Weaver
* gnu/packages/linux.scm (linux-libre): Update to 4.8. * gnu/packages/linux-libre-4.7-x86_64.conf, gnu/packages/linux-libre-4.7-i686.conf: Delete files. * gnu/packages/linux-libre-4.8-x86_64.conf, gnu/packages/linux-libre-4.8-i686.conf: New files. * Makefile.am (KCONFIGS): Update accordingly.
2016-10-03gnu: nss: Increase build timeout to 60 hours.Mark H Weaver
* gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to 60 hours.
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