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2016-01-24Merge branch 'master' into core-updatesMark H Weaver
2016-01-25doc: Add policy about version numbers for VCS snapshots.Ludovic Courtès
* doc/guix.texi (Version Numbers): Add paragraphs about VCS snapshot version numbers.
2016-01-25doc: Remove unneeded backslashes.Ludovic Courtès
* doc/guix.texi (Networking Services): Remove unneeded backslashes.
2016-01-25gnu: grue-hunter: Use 'https' URL.Ludovic Courtès
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
2016-01-25doc: 'base-initrd' has #:virtio? default to #t.Ludovic Courtès
This is a followup to e26d507. * doc/guix.texi (Initial RAM Disk): #:virtio? defaults to #t.
2016-01-25gnu: Add sortmerna.Ben Woodcroft
* gnu/packages/bioinformatics.scm (sortmerna): New variable.
2016-01-24doc: Fix typo in section on offloading.Andreas Enge
* doc/guix.texi (Daemon Offload Setup): Fix quoting typo in command.
2016-01-24gnu: calibre: Update to 2.49.0.Andreas Enge
* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
2016-01-24gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.Ricardo Wurmus
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable building libstdc++-v3 and enable building C++ compiler.
2016-01-24gnu: Add Qtractor.Ricardo Wurmus
* gnu/packages/music.scm (qtractor): New variable.
2016-01-24gnu: yoshimi: Update to 1.3.8.2.Ricardo Wurmus
* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
2016-01-24gnu: privoxy: Update to 3.0.24.Efraim Flashner
* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
2016-01-24gnu: tor: Update to 0.2.7.6.Efraim Flashner
* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
2016-01-24gnu: myrepos: Update to 1.20160123.Efraim Flashner
* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
2016-01-24gnu: nano: Update to 2.5.1.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.5.1.
2016-01-23build: container: Make 'unprivileged-user-namespace-supported?' more robust.Mark H Weaver
* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only read and check the first character, to cope with a possible newline in the (pseudo-)file.
2016-01-23gnu: letsencrypt and acme: Update to 0.2.0.Leo Famulari
These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.2.0. (acme): Update to 0.2.0.
2016-01-23gnu: claws-mail: Update to 3.13.2.Efraim Flashner
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
2016-01-23gnu: Add cufflinks.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
2016-01-23gnu: Add TopHat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tophat): New variable. * gnu/packages/patches/tophat-build-with-later-seqan.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2016-01-23gnu: star: Update to 2.5.1b.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b. [source]: Remove bundled htslib sources and pre-built binaries. [arguments]: Add phase "do-not-use-bundled-htslib". [inputs]: Add "htslib".
2016-01-23gnu: star: Use "modify-phases" syntax.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases" syntax.
2016-01-22gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].Efraim Flashner
* gnu/packages/linux.scm (fuse): Update to 2.9.5.
2016-01-22gnu: mozjs: Make milestone.pl compatible with Perl 5.22+.宋文武
* gnu/packages/gnuzilla.scm (mozjs, mozjs-24)[source]: Add snippet.
2016-01-21gnu: american-fuzzy-lop: Update to 1.96b.Eric Bavier
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b. [arguments]: Create symbolic link to custom qemu, rather than copying.
2016-01-21gnu: american-fuzzy-lop: Fix qemu configure flags.Eric Bavier
Fixes regression introduced in 06da1a6. * gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited #:configure-flags.
2016-01-21gnu: texi2html: Disable tests.Eric Bavier
* gnu/packages/texinfo.scm (texi2html): New 'arguments' field.
2016-01-21gnu: Add iftop.Leo Famulari
* gnu/packages/admin.scm (iftop): New variable.
2016-01-21Revert "gnu: Add iftop."Leo Famulari
This reverts commit 45da8c6dd10c93280277d17463d09fce6a25afe9.
2016-01-21gnu: Add iftop.Leo Famulari
* gnu/packages/admin.scm (iftop): New variable.
2016-01-22tests: Prevent 'http_proxy' from breaking Web server tests.Ludovic Courtès
* tests/lint.scm: Add call to 'unsetenv' to remove 'http_proxy'. * tests/publish.scm: Likewise.
2016-01-22doc: Fix typo in "Locales".Ludovic Courtès
* doc/guix.texi (Locales): Add missing 's'.
2016-01-22system: grub: Search root device by label or UUID if possible.Ludovic Courtès
Fixes <http://bugs.gnu.org/22281>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace 'search --file' command in the output with whatever 'grub-root-search' returns. (grub-root-search): New procedure. (grub-configuration-file): Add 'store-fs' parameter. Use 'grub-root-search' instead of hard-coded 'search --file' commands. * gnu/system.scm (store-file-system, operating-system-store-file-system): New procedures. (operating-system-grub.cfg): Use it, and adjust call to 'grub-configuration-file'. * tests/system.scm: New file. * Makefile.am (SCM_TESTS): Add it.
2016-01-21gnu: ffmpeg: Update to 2.8.5.Mark H Weaver
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-21gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].Mark H Weaver
* gnu/packages/messaging.scm (gajim): Update to 0.16.5. [arguments]: Disable tests.
2016-01-21gnu: bind-utils: Build and install "nsupdate".Ricardo Wurmus
* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install "nsupdate" executable.
2016-01-21gnu: bind-utils: Generalize "build" and "install" phases.Ricardo Wurmus
* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and "install" phases.
2016-01-21gnu: bind-utils: Use "modify-phases" syntax.Ricardo Wurmus
* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
2016-01-21gnu: r-qtl: Update to 1.38-4.Pjotr Prins
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
2016-01-21gnu: libxmp: Update to 4.3.10.Mark H Weaver
* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
2016-01-21gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}.Mark H Weaver
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch, gnu/packages/patches/libtiff-oob-accesses-in-decode.patch, gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff): Update to 4.0.6. [source]: Add patches.
2016-01-20gnu: Add NQC.Eric Bavier
* gnu/packages/lego.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20gnu: licenses: Add Mozilla Public License 1.0.Eric Bavier
* guix/licenses.scm (mpl1.0): New variable.
2016-01-20gnu: Add transmission-remote-cli.Leo Famulari
* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
2016-01-20gnu: Add dependencies on Perl modules as needed.Eric Bavier
This is a follow-on to bb8afbf5. * gnu/packages/language.scm (perl-lingua-en-inflect, perl-lingua-stem) (perl-snowball-norwegian, perl-snowball-swedish): Add 'native-inputs' field. * gnu/packages/perl.scm (perl-aliased, perl-class-accessor-chained) (perl-datetime-set, perl-datetime-format-ical, perl-datetime-locale) (perl-error, perl-module-runtime, perl-module-runtime-conflicts) (perl-path-class, perl-posix-strftime-compiler, perl-readonly) (perl-test-differences, perl-test-pod, perl-test-trap) (perl-text-aligner, perl-text-glob, perl-text-table, perl-tie-ixhash) (perl-time-mock): Ditto. (perl-config-any): Add 'propagated-inputs' field. (perl-data-page, perl-datetime, perl-datetime-format-natural) (perl-moosex-getopt, perl-moosex-role-parameterized) (perl-moosex-types, perl-namespace-autoclean, perl-params-validate) (perl-tree-simple-visitorfactory)[native-inputs]: Add PERL-MODULE-BUILD. (perl-file-changenotify)[native-inputs]: Ditto. [propagated-inputs]: Add PERL-MODULE-PLUGGABLE. (perl-datetime-format-flexible, perl-test-writevariants) [propagated-inputs]: Ditto. (perl-test-mockobject): Add 'arguments' field. * gnu/packages/mail.scm (perl-email-abstract)[propagated-inputs]: Ditto. * gnu/packages/web.scm (perl-datetime-format-http, perl-io-socket-ip) (perl-plack-middleware-methodoverride, perl-uri-find) (perl-www-mechanize): Add 'native-inputs' field. (perl-html-template, perl-http-server-simple): Add 'propagated-inputs' field. (perl-apache-logformat-compiler, perl-html-tree)[native-inputs]: Add PERL-MODULE-BUILD. (perl-catalyst-runtime)[propagated-inputs]: Add PERL-MODULE-PLUGGABLE. (perl-finance-quote)[propagated-inputs]: Add PERL-CGI.
2016-01-20gnu: Add perl-module-pluggable.Eric Bavier
This Perl module was moved out of Perl core in v5.19.0. * gnu/packages/perl.scm (perl-module-pluggable): New variable. * gnu/packages/patches/perl-module-pluggable-search.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
2016-01-20gnu: Add perl-cgi.Eric Bavier
The CGI module was removed from Perl core in v5.21.0. * gnu/packages/web.scm (perl-cgi): New variable.
2016-01-21doc: Explain how to make the Info manual visible.Ludovic Courtès
Suggested by David Thompson <dthompson2@worcester.edu> at <http://bugs.gnu.org/22402>. * doc/guix.texi (Binary Installation): Explain how to make the Info manual visible.
2016-01-21doc: Explain how to remove services from a list.Ludovic Courtès
Suggested by <swedebugia@riseup.net>. * doc/guix.texi (Using the Configuration System): Add @unnumberedsubsubsec. Explain how to remove services from a list. Mention (gnu system).
2016-01-21services: avahi: Export service type.Ludovic Courtès
* gnu/services/avahi.scm: Export 'avahi-service-type'.
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