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2020-08-13gnu: ghc-8.6: Remove unnecessary references.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-8.6)[arguments]: Add phase "remove-unnecessary-references" to remove references to build tools and inter-output references.
2020-08-13gnu: Add "static" output to Haskell packages with custom outputs.Ricardo Wurmus
All these packages have non-standard outputs. As a result the build system cannot automatically add the "static" output, so we do this manually. * gnu/packages/haskell-check.scm (ghc-quickcheck, ghc-hunit)[outputs]: Add "static" output. * gnu/packages/haskell-web.scm (ghc-http)[outputs]: Same. * gnu/packages/haskell-xyz.scm (ghc-case-insensitive, ghc-fgl, ghc-hashable, ghc-network, ghc-network-uri, ghc-parallel, ghc-paths, ghc-primitive, ghc-random, ghc-split, ghc-syb, ghc-tf-random, ghc-unordered-containers, ghc-vector, ghc-zlib)[outputs]: Same.
2020-08-13build-system/haskell: Do not pass "--bindir" during configure.Ricardo Wurmus
The "--bindir" option is not as useful as it seems as the configured location is embedded in the outputs. Instead of using "--bindir" it seems better to build a statically linked binary and move the binary to its own output to avoid references between the "out" and "bin" outputs. * guix/build/haskell-build-system.scm (configure): Do not pass "--bindir".
2020-08-13build-system/haskell: Add 'extra-directories' keyword.Timothy Sample
See <https://bugs.gnu.org/39309>. * guix/build-system/haskell.scm (lower): Include the transitive propagated inputs of 'extra-directories' inputs. (haskell-build): Add the 'extra-directories' keyword and pass it through to the builder. * guix/build/haskell-build-system.scm (configure): Use it to select which inputs get passed via 'extra-include-dirs' and 'extra-lib-dirs' to Cabal. * gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-hmatrix, ghc-hmatrix-gsl, ghc-hslua, ghc-iwlib, ghc-libyaml, ghc-ncurses, ghc-openglraw, ghc-x11, ghc-x11-xft, ghc-zlib): Set 'extra-directories'. * gnu/packages/haskell-crypto.scm (ghc-digest, ghc-hsopenssl): Likewise.
2020-08-12haskell-build-system: register: Remove references to the doc output.Ricardo Wurmus
* guix/build/haskell-build-system.scm (register): Strip references to the doc output from the generated package config files; move the haddock files from the "doc" output to the "lib" output.
2020-08-12haskell-build-system: register: Respect lib output.Ricardo Wurmus
* guix/build/haskell-build-system.scm (register): Use lib output if it exists.
2020-08-12build-system/haskell: Add default output "static".Ricardo Wurmus
* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the "static" output in the common case. (haskell-build): Set the default value for the OUTPUTS keyword to include the "static" output. * guix/build/haskell-build-system.scm (install): Move static libraries to the "static" output if it exists.
2020-08-12build-system/haskell: Configure to link with shared libraries.Ricardo Wurmus
* guix/build/haskell-build-system.scm (configure): Add configure flags to build shared libraries by default, to generate position independent code, and to set the RUNPATH.
2020-08-12build-system/haskell: Refactor configure step.Ricardo Wurmus
* guix/build/haskell-build-system.scm (configure): Replace append with quasiquotes and splicing.
2020-08-12build-system/haskell: Support parallel builds.Ricardo Wurmus
* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD? and pass it on to the builder. * guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD? and pass the number of parallel jobs to GHC.
2020-08-12gnu: Add ghc-8.8.Timothy Sample
* gnu/packages/haskell.scm (ghc-8.8): New variable.
2020-08-12gnu: r-car: Update to 3.0-9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-car): Update to 3.0-9.
2020-08-12gnu: r-fit-models: Update to 0.64.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fit-models): Update to 0.64.
2020-08-12gnu: r-rrcov: Update to 1.5-5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-5.
2020-08-12gnu: r-hmisc: Update to 4.4-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-1. [propagated-inputs]: Remove r-acepack.
2020-08-12gnu: r-tidyr: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.1. [propagated-inputs]: Remove r-rcpp and r-stringi; add r-cpp11.
2020-08-12gnu: r-dt: Update to 0.15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.15.
2020-08-12gnu: r-xml: Update to 3.99-0.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.5.
2020-08-12gnu: r-rcpparmadillo: Update to 0.9.900.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.2.0.
2020-08-12gnu: r-devtools: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.1. [propagated-inputs]: Remove r-crayon, r-digest, r-glue, and r-git2r.
2020-08-12gnu: r-httr: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-httr): Update to 1.4.2. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-data-table: Update to 1.13.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.0. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-dplyr: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.1.
2020-08-12gnu: r-ggdendro: Update to 0.1.21.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.21. [propagated-inputs]: Remove r-knitr. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-bit64: Update to 4.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bit64): Update to 4.0.2.
2020-08-12gnu: r-bit: Update to 4.0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bit): Update to 4.0.4. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-brms: Update to 2.13.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.13.5.
2020-08-12gnu: r-rxnat: Update to 1.0.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rxnat): Update to 1.0.12. [propagated-inputs]: Add r-dplyr.
2020-08-12gnu: r-aws: Update to 2.4-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-aws): Update to 2.4-3.
2020-08-12gnu: r-rstanarm: Update to 2.21.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.1. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-rstan: Update to 2.21.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan): Update to 2.21.2. [propagated-inputs]: Add r-withr.
2020-08-12gnu: r-quanteda: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.1.
2020-08-12gnu: r-shinycssloaders: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinycssloaders): Update to 1.0.0.
2020-08-12gnu: r-adamethods: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-adamethods): Update to 1.2.1.
2020-08-12gnu: r-fda: Update to 5.1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fda): Update to 5.1.5.1.
2020-08-12gnu: r-rgdal: Update to 1.5-16.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-16.
2020-08-12gnu: r-parameters: Update to 0.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.8.2.
2020-08-12gnu: r-dalex: Update to 1.3.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 1.3.1.1.
2020-08-12gnu: r-ibreakdown: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ibreakdown): Update to 1.3.1.
2020-08-12gnu: r-ingredients: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ingredients): Update to 1.3.1.
2020-08-12gnu: r-gbm: Update to 2.1.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-gbm): Update to 2.1.8. [propagated-inputs]: Remove r-gridextra. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-hierfstat: Update to 0.5-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-hierfstat): Update to 0.5-7. [propagated-inputs]: Add r-gaston. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-ibdreg: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ibdreg): Update to 0.3.1.
2020-08-12gnu: r-rms: Update to 6.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rms): Update to 6.0-1.
2020-08-12gnu: r-sf: Update to 0.9-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-5.
2020-08-12gnu: r-deldir: Update to 0.1-28.Ricardo Wurmus
* gnu/packages/cran.scm (r-deldir): Update to 0.1-28.
2020-08-12gnu: r-irkernel: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-irkernel): Update to 1.1.1.
2020-08-12gnu: r-lavaan: Update to 0.6-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-7.
2020-08-12gnu: r-compositions: Update to 2.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-compositions): Update to 2.0-0. [propagated-inputs]: Add r-mass. [native-inputs]: Add r-knitr.
2020-08-12gnu: r-epi: Update to 2.41.Ricardo Wurmus
* gnu/packages/cran.scm (r-epi): Update to 2.41.
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