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2019-05-11gnu: man-db: Update to 2.8.5.Tobias Geerinckx-Rice
* gnu/packages/man.scm (man-db): Update to 2.8.5. [arguments]: Add systemd unit directory to #:configure-flags.
2019-05-11services: gdm: Include user profile in D-Bus paths.Timothy Sample
This partially addresses <https://bugs.gnu.org/35267>. * gnu/services/xorg.scm (dbus-daemon-wrapper): When available, include directories from '~/.guix-profile' in the search paths of the D-Bus daemon.
2019-05-11gnu: wine-staging: Update to 4.8.Julien Lepiller
* gnu/packages/wine.scm (wine-staging,wine-staging-patchset-data): Update to 4.8.
2019-05-11gnu: emacs-use-package: Update to 2.4.Arun Isaac
* gnu/packages/emacs-xyz.scm (emacs-use-package): Update to 2.4.
2019-05-11gnu: Add emacs-rotate-text.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-rotate-text): New variable.
2019-05-11gnu: r-hdf5array: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.1.
2019-05-11gnu: r-sfsmisc: Update to 1.1-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-4.
2019-05-11gnu: r-dt: Update to 0.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.6.
2019-05-11gnu: r-rversions: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rversions): Update to 2.0.0.
2019-05-11gnu: r-quadprog: Update to 1.5-7.Ricardo Wurmus
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-7.
2019-05-11gnu: r-styler: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-styler): Update to 1.1.1.
2019-05-11gnu: r-bookdown: Update to 0.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.10.
2019-05-11gnu: r-future: Update to 1.13.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future): Update to 1.13.0.
2019-05-11gnu: r-grimport2: Update to 0.1-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-grimport2): Update to 0.1-5.
2019-05-11gnu: r-rcmdcheck: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.3.
2019-05-11gnu: r-fs: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fs): Update to 1.3.1.
2019-05-11gnu: r-parsedate: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parsedate): Update to 1.2.0. [propagated-inputs]: Add r-rematch2.
2019-05-11gnu: r-processx: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.3.1.
2019-05-11gnu: r-ggrepel: Update to 0.8.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.1.
2019-05-11gnu: r-dimred: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-dimred): Update to 0.2.3.
2019-05-11gnu: r-regioner: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.1.
2019-05-11gnu: osc: Update to 0.165.0.Jonathan Brielmaier
* gnu/packages/build-tools.scm (osc): Update to 0.165.0. [source]: Use git-fetch. [arguments]: Use python3. osc_hotshot.py is gone. So, do not attempt to delete it. Rename fix-filename-and-remove-unused phase to fix-filename phase. [inputs]: Add rpm. Remove python2-urlgrabber. Replace python2-m2crypto and python2-pycurl with python-m2crypto and python-pycurl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-11gnu: rpm: Update to 4.14.2.1.Jonathan Brielmaier
* gnu/packages/package-management.scm (rpm): Update to 4.14.2.1. [inputs]: Use python instead of python-2. [home-page]: Use HTTPS URI. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-11doc: Fix typo.Diego Nicola Barbato
* doc/guix.texi (shepherd-service): Replace 'requirements' with 'requirement'. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-11gnu: neovim: Update to 0.3.5.HiPhish
* gnu/packages/vim.scm (neovim): Update to 0.3.5. [source]: Use git-fetch. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-10etc: Refer to ci.guix.gnu.org in install script.Ricardo Wurmus
* etc/guix-install.sh: Replace reference to ci.guix.info with ci.guix.gnu.org.
2019-05-10services: 'gc-root-service-type' now has a default value.Ludovic Courtès
* gnu/services.scm (gc-root-service-type)[default-value]: New field.
2019-05-10linux-container: Improve filtering of unnecessary file systems.Ludovic Courtès
* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]: Add trailing slash for the "/dev/" and "/sys/" prefixes.
2019-05-10system: Export 'operating-system-default-essential-services'.Ludovic Courtès
* gnu/system.scm (essential-services): Rename to... (operating-system-default-essential-services): ... this. (<operating-system>)[essential-services]: Adjust accordingly.
2019-05-10gnu: Go 1.11: Update to 1.11.10.Leo Famulari
* gnu/packages/golang.scm (go-1.11): Update to 1.11.10.
2019-05-10gnu: emacs-auctex: Update to 12.1.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 12.1.2.
2019-05-10gnu: emacs-debbugs: Update to 0.18.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.18.
2019-05-10gnu: gnome-tweak-tool: Update to 3.28.1.Ricardo Wurmus
Fixes <https://bugs.gnu.org/35597>. * gnu/packages/gnome.scm (gnome-tweak-tool): Deprecate and rename... (gnome-tweaks): ...to this. Update to 3.28.1. [build-system]: Use meson-build-system. [arguments]: Adjust configure flags; pass glib-or-gtk? flag; remove custom phases that are now provided by the meson-build-system; add phases "wrap" and "wrap-gi-typelib". [native-inputs]: Remove meson-for-build and ninja. [home-page]: Update. [description]: Use "Tweaks" instead of "Tweak Tool". * gnu/packages/patches/gnome-tweak-tool-search-paths.patch: Rename file... * gnu/packages/patches/gnome-tweaks-search-paths.patch: ...to this. * gnu/local.mk (dist_patch_DATA): Update patch file name.
2019-05-10gnu: Add r-rqc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rqc): New variable.
2019-05-10gnu: Add r-quasr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-quasr): New variable.
2019-05-10gnu: Add r-rhisat2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
2019-05-10gnu: Add r-sgseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sgseq): New variable.
2019-05-10gnu: Add r-xgboost.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): New variable.
2019-05-10gnu: Add r-citr.Ricardo Wurmus
* gnu/packages/cran.scm (r-citr): New variable.
2019-05-10gnu: Add r-refmanager.Ricardo Wurmus
* gnu/packages/cran.scm (r-refmanager): New variable.
2019-05-10gnu: Add r-ggfortify.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfortify): New variable.
2019-05-10gnu: Add r-plot3d.Ricardo Wurmus
* gnu/packages/cran.scm (r-plot3d): New variable.
2019-05-10gnu: Add r-enrichr.Ricardo Wurmus
* gnu/packages/cran.scm (r-enrichr): New variable.
2019-05-10gnu: Add r-dalex.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): New variable.
2019-05-10gnu: Add r-rbowtie.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbowtie): New variable.
2019-05-10gnu: Add r-iclusterplus.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
2019-05-10gnu: linux-libre: Update to 5.1.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1. (%linux-libre-hash): Update hash. (%linux-libre-5.0-patches): Rename to ... (%linux-libre-5.1-patches): ... this. (linux-libre, linux-libre-arm-generic, linux-libre-arm-veyron) (linux-libre-arm-omap2plus): Use %linux-libre-5.1-patches. (vhba-module): Move definition below the kernel packages. * gnu/packages/aux-files/linux-libre/5.0-arm-veyron.conf, gnu/packages/aux-files/linux-libre/5.0-arm.conf, gnu/packages/aux-files/linux-libre/5.0-arm64.conf, gnu/packages/aux-files/linux-libre/5.0-i686.conf, gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf, gnu/packages/aux-files/linux-libre/5.1-arm.conf, gnu/packages/aux-files/linux-libre/5.1-arm64.conf, gnu/packages/aux-files/linux-libre/5.1-i686.conf, gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: New files. * Makefile.am (AUX_FILES): Adjust accordingly.
2019-05-10gnu: rust: Update to 1.34.1.Ivan Petkov
* gnu/packages/rust.scm (rust): Update to 1.34.1. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10gnu: rust: Make source derivations smaller.Ivan Petkov
* gnu/packages/rust.scm (rust-source-pre-1.32): Delete procedure. (rust-bootstrapped-package-pre-1.32): Delete procedure. (rust-bootstrapped-package): Remove optional keys, and return an origin. (rust-uri): New variable. (mrustc): Change native-input "rust" to use source of rust-1.19. (rust-1.19)[source]: Define package source. (rust-1.20): Use rust-bootstrapped-package. (rust-1.21): Likewise. (rust-1.22): Likewise. (rust-1.23): Likewise. (rust-1.24): Likewise. (rust-1.25): Likewise. (rust-1.26): Likewise. (rust-1.27): Likewise. (rust-1.28): Likewise. (rust-1.29): Likewise. (rust-1.30): Likewise. (rust-1.31): Likewise. (rust-1.32): Likewise. (rust-1.33): Likewise. (rust-1.34): Likewise. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10gnu: rust: Delete install logs and manifests.Ivan Petkov
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[delete-install-logs]: New phase. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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