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2023-05-09gnu: python-sqlalchemy: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Replace custom 'check phase with #:test-flags. [build-system]: Use pyproject-build-system.
2023-05-09gnu: python-sqlalchemy: Update to 1.4.42.Liliana Marie Prikler
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
2023-05-09gnu: python-starlette: Update to 0.25.0.Liliana Marie Prikler
* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0. [source]: Switch to git-fetch and git-reference. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-hatchling, python-httpx, python-pytest, and python-typing-extensions-next.
2023-05-09services: guix-build-coordinator: Support extra environment vars.Christopher Baines
I'm looking at this because I need to do some debugging of Guile's GC, and there are some useful environment variables for that, but it should be generally useful. * gnu/services/guix.scm (guix-build-coordinator-configuration-extra-environment-variables): New procedure. (guix-build-coordinator-shepherd-services): Pass the environment variables to the shepherd. * doc/guix.texi (Guix Services): Document it.
2023-05-09service: qemu-binfmt: Remove broken qemu targets.Efraim Flashner
* gnu/services.virtualization.scm (%qemu-platforms): Remove %i486, %aarch64be.
2023-05-09Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture."Efraim Flashner
This reverts commit c56d57110de1412d3529940d4f856611d123da66. rust-bootstrap *IS* supported on aarch64-linux, and the build farm will catch up eventually.
2023-05-09gnu: r-scran: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
2023-05-09gnu: r-scuttle: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
2023-05-09gnu: r-chromvar: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
2023-05-09gnu: r-hdf5array: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1. [propagated-inputs]: Add r-s4arrays.
2023-05-09gnu: r-s4vectors: Update to 0.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
2023-05-09gnu: r-preprocesscore: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
2023-05-09gnu: r-iclusterplus: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
2023-05-09gnu: r-clusterprofiler: Update to 4.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
2023-05-09gnu: r-dose: Update to 3.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
2023-05-09gnu: r-linnorm: Update to 2.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
2023-05-09gnu: r-dnacopy: Update to 1.74.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
2023-05-09gnu: r-scaledmatrix: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
2023-05-09gnu: r-glmgampoi: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
2023-05-09gnu: r-oligo: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
2023-05-09gnu: r-summarizedexperiment: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1. [propagated-inputs]: Add r-s4arrays.
2023-05-09gnu: r-scmap: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
2023-05-09gnu: r-rhdf5filters: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
2023-05-09gnu: r-pcaexplorer: Update to 2.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
2023-05-09gnu: r-impute: Update to 1.74.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
2023-05-09gnu: r-genefilter: Update to 1.82.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
2023-05-09gnu: r-edger: Update to 3.42.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
2023-05-09gnu: r-deseq2: Update to 1.40.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
2023-05-09gnu: r-biocparallel: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
2023-05-09gnu: r-annotationdbi: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
2023-05-09gnu: r-densvis: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
2023-05-09gnu: r-delayedarray: Update to 0.26.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2. [propagated-inputs]: Add r-s4arrays.
2023-05-09gnu: r-bandits: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
2023-05-09gnu: r-bambu: Update to 3.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
2023-05-09gnu: r-amplican: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1. [propagated-inputs]: Remove r-clustercrit; add r-cluster.
2023-05-09gnu: r-affyplm: Update to 1.76.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
2023-05-09gnu: Add r-s4arrays.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
2023-05-09gnu: r-deoptimr: Update to 1.0-13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-13.
2023-05-09gnu: r-gdata: Update to 2.19.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdata): Update to 2.19.0.
2023-05-09gnu: r-hmisc: Update to 5.1-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-0.
2023-05-09gnu: r-viridislite: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.2.
2023-05-09gnu: r-viridis: Update to 0.6.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.3.
2023-05-09gnu: r-pkgmaker: Update to 0.32.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.10.
2023-05-09gnu: r-httr: Update to 1.4.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-httr): Update to 1.4.6.
2023-05-09gnu: r-chron: Update to 2.3-61.Ricardo Wurmus
* gnu/packages/statistics.scm (r-chron): Update to 2.3-61.
2023-05-09gnu: r-testthat: Update to 3.1.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.8.
2023-05-09gnu: r-evaluate: Update to 0.21.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.21.
2023-05-09gnu: r-nnet: Update to 7.3-19.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-19.
2023-05-09gnu: r-kernsmooth: Update to 2.23-21.Ricardo Wurmus
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-21.
2023-05-09gnu: r-class: Update to 7.3-22.Ricardo Wurmus
* gnu/packages/statistics.scm (r-class): Update to 7.3-22.
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