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2022-06-13gnu: r-terra: Update to 1.5-34.Ricardo Wurmus
* gnu/packages/cran.scm (r-terra): Update to 1.5-34.
2022-06-13gnu: r-aplot: Update to 0.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-aplot): Update to 0.1.6.
2022-06-13gnu: r-kernlab: Update to 0.9-31.Ricardo Wurmus
* gnu/packages/cran.scm (r-kernlab): Update to 0.9-31.
2022-06-13gnu: r-haplo-stats: Update to 1.8.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.9.
2022-06-13gnu: r-adegenet: Update to 2.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.7.
2022-06-13gnu: r-classint: Update to 0.4-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-classint): Update to 0.4-7.
2022-06-13gnu: r-apcluster: Update to 1.4.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.10.
2022-06-13gnu: r-parallelly: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parallelly): Update to 1.32.0.
2022-06-13gnu: r-rmpfr: Update to 0.8-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-9.
2022-06-13gnu: r-sodium: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sodium): Update to 1.2.1.
2022-06-13gnu: r-admisc: Update to 0.28.Ricardo Wurmus
* gnu/packages/cran.scm (r-admisc): Update to 0.28.
2022-06-13gnu: r-rgl: Update to 0.109.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl): Update to 0.109.2. [propagated-inputs]: Add r-base64enc and r-mime. [native-inputs]: Add r-rmarkdown.
2022-06-13gnu: r-flextable: Update to 0.7.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.7.2.
2022-06-13gnu: r-officer: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.4.3.
2022-06-13gnu: r-rdpack: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 2.3.1.
2022-06-13gnu: r-ellipse: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.3.
2022-06-13gnu: r-sna: Update to 2.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-sna): Update to 2.7.
2022-06-13gnu: r-processx: Update to 3.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.6.0.
2022-06-13gnu: r-vcd: Update to 1.4-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-vcd): Update to 1.4-10.
2022-06-13gnu: r-ipred: Update to 0.9-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-ipred): Update to 0.9-13.
2022-06-13gnu: r-progressr: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-progressr): Update to 0.10.1.
2022-06-13gnu: r-bdsmatrix: Update to 1.3-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-6.
2022-06-13gnu: r-sp: Update to 1.5-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 1.5-0.
2022-06-13gnu: r-proxy: Update to 0.4-27.Ricardo Wurmus
* gnu/packages/cran.scm (r-proxy): Update to 0.4-27.
2022-06-13gnu: r-restrserve: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-restrserve): Update to 1.2.0.
2022-06-13gnu: r-benchmarkme: Update to 1.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-benchmarkme): Update to 1.0.8. [propagated-inputs]: Add r-stringr.
2022-06-13gnu: r-afpt: Update to 1.1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.2.
2022-06-13gnu: r-nbpseq: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
2022-06-13gnu: r-restfulr: Update to 0.0.14.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
2022-06-13gnu: Add js-mathjax-for-r-mathjaxr.Ricardo Wurmus
* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable.
2022-06-13gnu: python-asyncssh: Update to 2.11.0.Lars-Dominik Braun
* gnu/packages/ssh.scm (python-asyncssh)[version]: Update to 2.11.0. [propagated-inputs]: Add python-typing-extensions. [native-inputs]: Add python-fido2, python-aiofiles, netcat and python-pytest. [arguments]: Disable netcat autodetection. Replace 'check with call to pytest.
2022-06-13gnu: Add python-langcodes.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-langcodes): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-13services: guix: Generalize extensions.terramorpha
* gnu/services/base.scm (<guix-extension>): New record type. (guix-extension-merge): New procedure. (guix-service-type): Honor extensions. * doc/guix.texi (Base Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-13gnu: racket: Avoid use of (ice-9 exceptions).Ludovic Courtès
Fixes <https://issues.guix.gnu.org/54546>. Reported by Giovanni Biscuolo <g@xelera.eu> and Michael Chirillo <michael.a.chirillo@gmail.com>. * gnu/packages/racket.scm (racket): Rewrite in terms of SRFI-34/35 instead of (ice-9 exceptions).
2022-06-13challenge: Actually delete nars that have been extracted.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55809>. Reported by Vagrant Cascadian <vagrant@reproducible-builds.org>. * guix/scripts/challenge.scm (make-directory-writable): New procedure. (call-with-mismatches)[restore-file*]: New procedure. Use it instead of 'restore-file'.
2022-06-13gnu: txr: Update to 277.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 277. [inputs]: Add zlib.
2022-06-13Merge branch 'staging'Ludovic Courtès
2022-06-13gnu: ungoogled-chromium: Update to 102.0.5005.115-1.Marius Bakke
* gnu/packages/chromium.scm (%chromium-version): Set to 102.0.5005.115. (%ungoogled-revision): Set to 1. (%ungoogled-origin, ungoogled-chromium): Update hash.
2022-06-13gnu: LLVM, Clang, LLD: Update to 14.0.5.Marius Bakke
* gnu/packages/llvm.scm (llvm-14, clang-14, lld-14): Update to 14.0.5. (%llvm-monorepo-hashes, %llvm-patches): Adjust accordingly.
2022-06-13gnu: uBlock Origin: Update to 1.43.0.Marius Bakke
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.43.0.
2022-06-12gnu: Add r-deconvr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
2022-06-12gnu: Add r-rsq.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsq): New variable.
2022-06-12Merge branch 'master' into stagingLudovic Courtès
2022-06-12gnu: Add emacs-corfu-doc-terminal.jgart
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12gnu: Add emacs-corfu-terminal.jgart
* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12gnu: llvm-14: Fix configure-flags for cross-compiling.Efraim Flashner
* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in configure-flags when cross-compiling llvm.
2022-06-12gnu: zig: Limit to 64bit systems.Efraim Flashner
* gnu/packages/zig.scm (zig)[supported-systems]: New field.
2022-06-12guix: packages: Add %32bit-supported-systems, %64bit-supported-systems.Efraim Flashner
* guix/packages.scm (%32bit-supported-systems, %64bit-supported-systems): New variables. (%supported-systems): Rewrite using %32bit-supported-systems, %64bit-supported-systems.
2022-06-12gnu: r-hdf5array: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
2022-06-12gnu: r-universalmotif: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
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