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2023-04-06environment: Add '--nesting'.Ludovic Courtès
* guix/scripts/environment.scm (show-environment-options-help) (%options): Add '--nesting'. (options/resolve-packages): Handle it. (launch-environment/container): Add #:nesting? and honor it. [nesting-mappings]: New procedure. (guix-environment*): Add support for '--nesting'. * guix/scripts/shell.scm (profile-cached-gc-root): Special-case 'nesting?'. * tests/guix-environment-container.sh: Test it. * doc/guix.texi (Invoking guix shell): Document it.
2023-04-06gnu: rizin: Update to 0.5.2.Theofilos Pechlivanis
* gnu/packages/engineering.scm (rizin): Update to 0.5.2. [arguments]: Remove libuv. Add lzma, libmspack and swift_demangler. Skip the analysis_var test. [inputs]: Add libmspack. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: janet: Update to 1.27.0.Yovan Naumovski
* gnu/packages/lisp.scm (janet): Update to 1.27.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: libexif: Update to 0.6.24. [fixes CVE-2020-0198, CVE-2020-0452]Bruno Victal
* gnu/packages/photo.scm (libexif): Update to 0.6.24. [source]: Switch to git checkout. [native-inputs]: Add autoconf, automake, gettext-minimal and libtool. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: tcsh: Fix riscv64 cross-compilation.Z572
* gnu/packages/shells.scm (tcsh): fix riscv64 cross-build. [arguments]<#:phase>: Add 'update-config-scripts' phase for riscv64. [native-inputs]: Add CONFIG for riscv64. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: Add avfs.Sergey Trofimov
* gnu/packages/file-systems.scm (avfs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: pounce: Update to 3.1.Arjan Adriaanse
* gnu/packages/messaging.scm (pounce): Update to 3.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: r-ranger: Update to 0.15.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.15.1.
2023-04-06gnu: r-sn: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 2.1.1. [native-inputs]: Add r-r-rsp.
2023-04-06gnu: r-rsqlite: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.1.
2023-04-06gnu: r-rcpparmadillo: Update to 0.12.2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.2.0.0.
2023-04-06gnu: r-ggplot2: Update to 3.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.2.
2023-04-06gnu: r-matrix: Update to 1.5-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.
2023-04-06gnu: r-lattice: Update to 0.21-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-8.
2023-04-06gnu: r-gstat: Update to 2.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-gstat): Update to 2.1-1.
2023-04-06gnu: r-spacetime: Update to 1.3-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spacetime): Update to 1.3-0.
2023-04-06gnu: r-ggh4x: Update to 0.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.4.
2023-04-06gnu: r-readtext: Update to 0.82.Ricardo Wurmus
* gnu/packages/cran.scm (r-readtext): Update to 0.82. [propagated-inputs]: Remove r-tibble; add r-pillar.
2023-04-06gnu: r-densestbayes: Update to 1.0-2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-densestbayes): Update to 1.0-2.2.
2023-04-06gnu: r-tune: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tune): Update to 1.1.0.
2023-04-06gnu: r-dials: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dials): Update to 1.2.0.
2023-04-06gnu: r-projpred: Update to 2.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-projpred): Update to 2.5.0. [propagated-inputs]: Remove r-dplyr, r-magrittr, and r-rlang.
2023-04-06gnu: r-loo: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo): Update to 2.6.0.
2023-04-06gnu: r-openmx: Update to 2.21.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-openmx): Update to 2.21.8.
2023-04-06gnu: r-topicmodels: Update to 0.2-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-14.
2023-04-06gnu: r-emplik: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-emplik): Update to 1.3.
2023-04-06gnu: r-rglpk: Update to 0.6-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rglpk): Update to 0.6-5.
2023-04-06gnu: r-parameters: Update to 0.20.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.20.3.
2023-04-06gnu: r-xgboost: Update to 1.7.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.5.1.
2023-04-06gnu: r-seqinr: Update to 4.2-30.Ricardo Wurmus
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-30.
2023-04-06gnu: r-sjplot: Update to 2.8.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.14. [propagated-inputs]: Remove r-effectsize.
2023-04-06gnu: r-ggeffects: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.1.
2023-04-06gnu: r-glmmtmb: Update to 1.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.7.
2023-04-06gnu: r-interp: Update to 1.1-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-interp): Update to 1.1-4.
2023-04-06gnu: r-flextable: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.9.1.
2023-04-06gnu: r-ellipse: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.5.
2023-04-06gnu: r-quantmod: Update to 0.4.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.21.
2023-04-06gnu: r-tsp: Update to 1.2-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.2-4.
2023-04-06gnu: r-prodlim: Update to 2023.03.31.Ricardo Wurmus
* gnu/packages/cran.scm (r-prodlim): Update to 2023.03.31. [propagated-inputs]: Add r-data-table and r-diagram.
2023-04-06gnu: r-ps: Update to 1.7.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ps): Update to 1.7.4.
2023-04-06gnu: r-ecp: Update to 3.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ecp): Update to 3.1.4. [native-inputs]: Add r-r-rsp.
2023-04-06gnu: r-ggvenn: Update to 0.1.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggvenn): Update to 0.1.10.
2023-04-06gnu: r-ggpp: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.2.
2023-04-06gnu: r-datawizard: Update to 0.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.7.1.
2023-04-06gnu: r-numbat: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.0.
2023-04-06gnu: linux-libre 4.14: Update to 4.14.312.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.312. (linux-libre-4.14-pristine-source): Update hash.
2023-04-06gnu: linux-libre 4.19: Update to 4.19.280.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.280. (linux-libre-4.19-pristine-source): Update hash.
2023-04-06gnu: linux-libre 5.4: Update to 5.4.240.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.240. (linux-libre-5.4-pristine-source): Update hash.
2023-04-06gnu: linux-libre 5.10: Update to 5.10.177.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.177. (linux-libre-5.10-pristine-source): Update hash.
2023-04-06gnu: linux-libre 5.15: Update to 5.15.106.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.106. (linux-libre-5.15-pristine-source): Update hash.
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