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2016-03-05store: Add 'references/substitutes'.Ludovic Courtès
* guix/store.scm (references/substitutes): New procedure. * tests/store.scm ("references/substitutes missing reference info") ("references/substitutes with substitute info"): New tests.
2016-03-05tests: Narinfos can specify an non-empty reference list.Ludovic Courtès
* guix/tests.scm (derivation-narinfo): Add #:references and honor it. (call-with-derivation-narinfo, call-with-derivation-substitute): Likewise. (with-derivation-narinfo, with-derivation-substitute): Add 'references' keyword.
2016-03-05guix build: Set the build options early.Ludovic Courtès
This fixes a bug whereby, with grafts leading to builds very early, build options such as --substitute-urls would not be taken into account yet. Reported by Andreas Enge <andreas@enge.fr>. * guix/scripts/build.scm (guix-build): Move 'opts' to the beginning. Use 'with-store' instead of 'open-connection'. Call 'set-build-options-from-command-line' right after 'with-store'.
2016-03-04gnu: letsencrypt, python-acme: Update to 0.4.2.Leo Famulari
These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.4.2. (python-acme, python2-acme): Update to 0.4.2.
2016-03-04gnu: python-cryptography, python-cryptography-vectors: Update to 1.2.3.Leo Famulari
These packages should be updated together. * gnu/packages/python.scm (python-cryptography): Update to 1.2.3. (python-cryptography-vectors): Update to 1.2.3.
2016-03-04doc: Mention syslogd configuration.Ludovic Courtès
* gnu/services/base.scm (syslog-service): Add xref to Inetutils in the docstring. (%default-syslog.conf): Export. * doc/guix.texi (Base Services): Update accordingly.
2016-03-04lint: cve: Gracefully handle HTTP errors.Ludovic Courtès
* guix/scripts/lint.scm (current-vulnerabilities*): New procedure. (package-vulnerabilities): Use it.
2016-03-04gnu: gnome: Sync description and synopsis.Ludovic Courtès
* gnu/packages/gnome.scm (gnome)[synopsis, description]: Use official GNU blurb.
2016-03-04gnu: nano: Update to 2.5.3.Ludovic Courtès
* gnu/packages/nano.scm (nano): Update to 2.5.3.
2016-03-04gnu: libgit2: Update to 0.23.4.Ludovic Courtès
* gnu/packages/version-control.scm (libgit2): Update to 0.23.4.
2016-03-04gnu: findnewest: Update to 0.3.Ludovic Courtès
* gnu/packages/version-control.scm (findnewest): Update to 0.3.
2016-03-04emacs: Use '@' to separate package names and version numbers.Alex Kost
This is a followup to commit 1b846da8c372bee78851439fd9e72b2499115e5a. * emacs/guix-base.el (guix-package-name-specification): Use "@" instead of "-". * emacs/guix-main.scm (name+version->full-name): Likewise. (package-inputs-names): Use 'make-package-specification' instead of 'package-full-name'. (full-name->name+version): Update the docstring. * emacs/guix-ui-package.el (guix-packages-by-name): Likewise.
2016-03-04emacs: hydra: Use '-' to separate job names and version numbers.Alex Kost
* emacs/guix-hydra.el (guix-hydra-job-name-specification): New procedure. * emacs/guix-ui-package.el (guix-package-info-insert-systems) (guix-package-list-latest-builds): Use it.
2016-03-03gnu: exim: Update to 4.86.2 [fixes CVE-2016-1531].Leo Famulari
* gnu/packages/mail.scm (exim): Update to 4.86.2.
2016-03-03gnu: Add byzanz.David Thompson
* gnu/packages/gnome.scm (byzanz): New variable.
2016-03-03doc: Improve Info categories.Ludovic Courtès
* doc/guix.texi: Change main category to "System administration". Fix syntax of subnodes. Add entries for 'guix pull' and 'guix gc'. Add "Emacs" category.
2016-03-03build: Use (guix grafts) as needed.Ludovic Courtès
This is a followup to 7adf9b8. * build-aux/check-final-inputs-self-contained.scm: Use (guix grafts). * build-aux/check-available-binaries.scm: Likewise.
2016-03-03gnu: youtube-dl: Update to 2016.03.01.Efraim Flashner
* gnu/packages/video.scm (youtube-dl): Update to 2016.03.01.
2016-03-03gnu: mpv: Update to 0.16.0.Efraim Flashner
* gnu/packages/video.scm (mpv): Update to 0.16.0.
2016-03-03gnu: perl: Replace with patched version [fixes CVE-2016-2381].Leo Famulari
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[replacement]: New field. (perl-fixed): New variable. * gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
2016-03-03gnu: irssi: Support proxy, socks, bot.Efraim Flashner
* gnu/packages/irc.scm (irssi)[arguments]: Add configure flags to support proxy, socks and bot.
2016-03-03gnu: irssi: Update to 0.8.18.Efraim Flashner
* gnu/packages/irc.scm (irssi): Update to 0.8.18. [source]: Update uri.
2016-03-03build: Build (guix import github) only when Guile-JSON is available.Ludovic Courtès
Reported by Justus Winter <justus@gnupg.org>. * Makefile.am (MODULES): Add guix/import/github.scm only when HAVE_GUILE_JSON.
2016-03-03po: Drop removed file 'weechat.scm'.Justus Winter
Fixes <http://bugs.gnu.org/22888>. weechat has been merged into 'irc.scm' in e288f007. * po/packages/POTFILES.in: Drop removed file 'weechat.scm'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-03-03system: GRUB menu entry says "beta" instead of "alpha"Petter
* gnu/system.scm (kernel->grub-label): Change "alpha" to "beta'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-03-03system: Add rfkill to '%base-packages'.Ludovic Courtès
* gnu/system.scm (%base-packages): Add RFKILL.
2016-03-03gnu: python-pysam: Move cython and setuptools to native inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move "python-cython" and "python-setuptools" from here... [native-inputs]: ... to here.
2016-03-03gnu: deeptools: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1. [inputs]: Add "python2-numpydoc" and "python2-pybigwig".
2016-03-03gnu: deeptools: Change "propagated-inputs" to "inputs".Ricardo Wurmus
* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here.
2016-03-03gnu: Add python-pybigwig.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig): New variables.
2016-03-03gnu: python-pysam: Update to 0.8.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4.
2016-03-03gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.Ricardo Wurmus
* gnu/packages/python.scm (python-pysam, python2-pysam): Move to... * gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): ...here.
2016-03-03lint: derivation: Disable grafts, but check replacements.Ludovic Courtès
* guix/scripts/lint.scm (check-derivation): Pass #:graft? #f. When 'package-replacement' exists, compute its derivation.
2016-03-02gnu: Add procmail.Lukas Gradl
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/mail.scm (procmail): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-03-03guix build: -S returns the replacement's source.Ludovic Courtès
Reported by Mark H Weaver. * guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are true, use the source of P's replacement. * tests/guix-build.sh: Add test.
2016-03-03hydra: Completely disable grafting.Ludovic Courtès
* build-aux/hydra/gnu-system.scm (hydra-jobs): Parameterize '%graft?'. Build package replacements when they are available.
2016-03-03hydra: Improve readability.Ludovic Courtès
* build-aux/hydra/gnu-system.scm (hydra-jobs): Use 'filter-map' instead of directly 'fold-packages'.
2016-03-02utils: Use '@' for separating package names and version numbers.Mathieu Lirzin
This provides the ability to use numbers in package names. Fixes <http://bugs.gnu.org/19219>. * guix/utils.scm (package-name->name+version): New procedure. * gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument. Use the previous method when no package is found. (specification->package+output, specification->package): Adapt documentation to new syntax. * doc/guix.texi (Invoking guix package, Invoking guix import): Likewise. * guix/ui.scm (package-specification->name+version+output): Likewise. * guix/scripts/import/hackage.scm (show-help): Likewise. * tests/guix-build.sh: Adapt to new syntax. * tests/guix-lint.sh: Likewise. * tests/guix-package.sh: Likewise. * tests/ui.scm ("package-specification->name+version+output"): Likewise. * tests/utils.scm ("package-name->name+version"): Likewise. * NEWS: Mention new syntax.
2016-03-02packages: Factorize package specification search.Mathieu Lirzin
* gnu/packages.scm (%find-package): New procedure. (specification->package, specification->package+output): Use it.
2016-03-02gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes].Mark H Weaver
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
2016-03-02gnu: nss: Update to 3.21.1.Mark H Weaver
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.1.
2016-03-02gnu: graphite2: Replace with 1.3.6 [unspecified security fixes].Mark H Weaver
See <https://bodhi.fedoraproject.org/updates/FEDORA-2016-dec1faadc5> * gnu/packages/fontutils.scm (graphite2)[replacement]: New field. (graphite2-1.3.6): New variable.
2016-03-02gnu: Add password-store.Jessica Tallon
* gnu/packages/password-utils.scm (password-store): New variable. Co-authored-by: Andreas Enge <andreas@enge.fr> Co-authored-by: Leo Famulari <leo@famulari.name>
2016-03-02gnu: Add cppcheck.Roel Janssen
* gnu/packages/check.scm (cppcheck): New variable.
2016-03-02tests: Disable grafts by default.Ludovic Courtès
Fixes <http://bugs.gnu.org/22872>. Reported by myglc2 <myglc2@gmail.com>. * test-env.in: Define and export 'GUIX_BUILD_OPTIONS'. * tests/guix-build.sh: When setting 'GUIX_BUILD_OPTIONS', make sure it contains '--no-grafts'. * tests/guix-package.sh: Likewise. * tests/guix-daemon.sh: Add (%graft? #f) in Scheme snippets.
2016-03-02graph: Ignore 'GUIX_BUILD_OPTIONS'.Ludovic Courtès
Previously 'GUIX_BUILD_OPTIONS' would be honored, but 'guix graph' does not support the common build options. * guix/scripts/graph.scm (guix-graph): Use 'args-fold*' instead of 'parse-command-line'.
2016-03-02guix build: Move '--no-grafts' to the common build options.Ludovic Courtès
* guix/scripts/build.scm (%options): Move --no-grafts to... (%standard-build-options): ... here. (show-help, show-build-options-help): Adjust accordingly. * guix/scripts/archive.scm (%default-options): Add 'graft?'. (guix-archive): Parametrize '%graft?'. * guix/scripts/environment.scm (%default-options): Add 'graft?'. (guix-environment): Parametrize '%graft?'. * guix/scripts/package.scm (%default-options): Add 'graft?'. (guix-package): Parametrize '%graft?'. * guix/scripts/system.scm (%default-options): Add 'graft?'. (guix-system): Parametrize 'graft?'. * doc/guix.texi (Additional Build Options): Move --no-grafts to... (Common Build Options): ... here.
2016-03-02guix archive: Use 'with-store'.Ludovic Courtès
* guix/scripts/archive.scm (guix-archive): Use 'with-store' instead of an explicit 'open-connection'.
2016-03-02gnu: openssl: Enable ssl2 at build time to ensure ABI compatible graft.Mark H Weaver
Fixes <https://debbugs.gnu.org/22876> Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/packages/tls.scm (openssl-1.0.2g)[arguments]: Override the inherited 'configure' phase to add "enable-ssl2" as an argument to ./config.
2016-03-01gnu: ilmbase: Fix typo in adding a patch.Leo Famulari
* gnu-system.am (dist_patch_DATA): Fix typo. 5e8276dcf4e3a05f69176dca816f00616e7f0593
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