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2022-10-27gnu: Add r-attract.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-attract): New variable.
2022-10-27gnu: Add r-awfisher.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-awfisher): New variable.
2022-10-27gnu: Add r-awst.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-awst): New variable.
2022-10-27gnu: ungoogled-chromium: Update to 107.0.5304.68-1.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M107. (%chromium-version): Set to 107.0.5304.68. (%ungoogled-origin): Update hash. (%chromium-gcc-patchset, gcc-patch): Remove. (%gcc-patches): Empty list. (ungoogled-chromium)[source]: Update hash. [arguments]: Add clang_base_path and use_system_libwayland_server to #:configure-flags. Adjust substitutions. [inputs]: Add QTBASE-5.
2022-10-27gnu: Add r-barcodetrackr.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
2022-10-27gnu: Add r-banocc.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-banocc): New variable.
2022-10-27gnu: Add r-bandits.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bandits): New variable.
2022-10-27gnu: Add r-bambu.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bambu): New variable.
2022-10-27gnu: Add r-badregionfinder.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
2022-10-27gnu: Add r-bader.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bader): New variable.
2022-10-27gnu: Add r-bac.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bac): New variable.
2022-10-27gnu: Add r-basespacer.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-basespacer): New variable.
2022-10-27gnu: Add r-eulerr.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-eulerr): New variable.
2022-10-27gnu: Add r-tximportdata.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
2022-10-27gnu: Add r-fishpond.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-fishpond): New variable.
2022-10-27gnu: Add python-multivelo.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-multivelo): New variable.
2022-10-27gnu: Add r-seuratwrappers.Hong.Li@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-seuratwrappers): New variable.
2022-10-27gnu: r-seurat: Update to 4.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 4.2.0.
2022-10-27gnu: r-seuratobject: Update to 4.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.2.
2022-10-27gnu: Add r-baalchip.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-baalchip): New variable.
2022-10-27gnu: Add python-jupytext.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-jupytext): New variable.
2022-10-27gnu: Add python-mdit-py-plugins.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-mdit-py-plugins): New variable.
2022-10-27gnu: Add python-markdown-it-py.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-markdown-it-py): New variable.
2022-10-27gnu: Add python-mdurl.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-mdurl): New variable.
2022-10-27gnu: Add ghc-6.0.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-6.0): New variable.
2022-10-27gnu: ghc-4: Build full compiler using provided *.hc files.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-4)[source]: Remove patch. [arguments]: Change to build full compiler. [native-inputs]: Remove default binutils and gcc; add tarball for hc files. * gnu/packages/patches/ghc-4.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-10-27gnu: python-afdko: Skip a test.Efraim Flashner
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Adjust custom 'check phase to skip a test.
2022-10-27gnu: Add emacs-clj-refactor.Andrew Tropin
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): New variable.
2022-10-27gnu: Add emacs-inflections.Andrew Tropin
* gnu/packages/emacs-xyz.scm (emacs-inflections): New variable.
2022-10-23gnu: xorriso: Update to 1.5.4.Tobias Geerinckx-Rice
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.4.
2022-10-23gnu: sudo: Update to 1.9.12.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sudo): Update to 1.9.12.
2022-10-23gnu: mpv: Prepare for cross-compilation.Tobias Geerinckx-Rice
* gnu/packages/video.scm (mpv)[arguments]: Use CC-FOR-TARGET.
2022-10-23gnu: mpv: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/video.scm (mpv)[arguments]: Rewrite as G-expressions.
2022-10-23gnu: mpv: Remove input labels.Tobias Geerinckx-Rice
* gnu/packages/video.scm (mpv)[inputs]: Remove input labels. [arguments]: Use SEARCH-INPUT-FILE instead.
2022-10-23gnu: mpv: Remove trailing #t from phases.Tobias Geerinckx-Rice
* gnu/packages/video.scm (mpv)[arguments]: Don't explicitly return #t from phases.
2022-10-23system: Support bare-bones serial console.Tobias Geerinckx-Rice
* gnu/system/examples/bare-bones.tmpl (operating-system): Add a ttyS0 console to kernel-arguments.
2022-10-23gnu: memtest86+: Include a GRUB-based ISO image.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (memtest86+)[arguments]: Add a new 'patch-broken-Makefiles and custom 'build phase. Add "grub-memtest.iso" to the list of files to 'install. [native-inputs]: Add dosfstools, grub-hybrid, mtools, and xorriso.
2022-10-23gnu: memtest86+: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (memtest86+)[arguments]: Rewrite as G-expressions.
2022-10-23gnu: memtest86+: Update to 6.00.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (memtest86+): Update to 6.00. [source]: Use GIT-FETCH & GIT-FILE-NAME. [arguments]: Stop forcing #:system i686-linux. Instead, honour the target word size in a new 'enter-build-directory phase. Remove custom 'build phase: ‘memtest’ was replaced by ‘memtest.efi’. Adjust the 'install phase accordingly, and install only ‘README.md’. [native-inputs]: Remove gcc-4.9. [description]: Remove obsolete BIOS limitation.
2022-10-23gnu: mu: Update to 1.8.11.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (mu): Update to 1.8.11.
2022-10-26gnu: oil: Update to 0.12.7.Felix Gruber
* gnu/packages/shells.scm (oil): Update to 0.12.7. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26gnu: git-remote-gcrypt: Update to 1.5.Michael Rohleder
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26gnu: git-crypt: Update to 0.7.0.Michael Rohleder
* gnu/packages/version-control.scm (git-crypt): Update to 0.7.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26gnu: qpwgragh: Update to 0.3.7.ギャラ
* gnu/packages/audio.scm (qpwgragh): Update to 0.3.7. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-26gnu: komikku: Update to 1.2.0.Liliana Marie Prikler
* gnu/packages/gnome.scm (komikku): Update to 1.2.0. [inputs]: Add ‘python-rarfile’.
2022-10-26gnu: tinmop: Update to 0.9.9.cage
* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.9. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-10-26gnu: five-or-more: Fix build.Efraim Flashner
* gnu/packages/gnome.scm (five-or-more)[inputs]: Replace libgnome-games-support with libgnome-games-support-1.
2022-10-26gnu: xpad: Fix build.Efraim Flashner
* gnu/packages/gnome.scm (xpad)[inputs]: Add gtk+. Replace gtksourceview with gtksourceview-4.
2022-10-26gnu: rust-git2: Adjust inputs.Efraim Flashner
* gnu/packages/crates-io.scm (rust-git2-0.15)[inputs]: Replace libgit2-1.3 with libgit2. (rust-git2-0.13)[inputs]: Continue with libgit2-1.3.
2022-10-26Merge remote-tracking branch 'origin/staging'Efraim Flashner