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2021-05-20gnu: Add julia-zstd-jll.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-zstd-jll): New variable.
2021-05-20gnu: Add julia-jpegturbo-jll.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-jpegturbo-jll): New variable.
2021-05-20gnu: emacs-picpocket: Update to version 41.Maxim Cournoyer
Partially resolves <https://issues.guix.gnu.org/47592>. * gnu/packages/emacs-xyz.scm (emacs-picpocket): Update to version 41.
2021-05-20gnu: r-rhdf5filters: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Update to 1.2.1.
2021-05-20gnu: r-multidataset: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.2.
2021-05-20gnu: txr: Update to 259.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 259.
2021-05-20gnu: sbcl-flexi-streams: Update to 1.0.19.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-flexi-streams): Update to 1.0.19. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-20gnu: sbcl-fiveam: Update to 1.4.2.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-fiveam): Update to 1.4.2. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-20gnu: sbcl-golden-utils: Update to 0.0.0-3.fe1898f.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scp (sbcl-golden-utils): Update to 0.0.0-3.fe1898f. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-20gnu: sbcl-numcl: Update to 0.2.0-2.3dcdb0e.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-numcl): Update to 0.2.0-2.3dcdb0e. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-20gnu: sbcl-pzmq: Update to 0.0.0-2.6f7b2ca.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-pzmq): Update to 0.0.0-2.6f7b2ca. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-20gnu: emacs-org: Update to 9.4.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.6. [arguments]<phases>: Remove unnecessary phase. (emacs-org-contrib): Update to 20210519.
2021-05-20gnu: nyxt: Update to 2.0.0.Pierre Neidhardt
* gnu/packages/web-browsers.scm (nyxt): Update to 2.0.0. [arguments]: Remove useless set-version phase. [inputs]: Remove unused file-attributes. [description]: Follow upstream updates.
2021-05-20gnu: sbcl-iolib: Also build iolib/os.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-iolib)[arguments]: Add iolib/os to asd-systems.
2021-05-20scripts: challenge: Fix regression.Mathieu Othacehe
This is a follow-up of 3cde5231aa78aa5e31b27888cd78ee0b250a7a1c that fixes the challenge test. When dealing with uncompressed NAR, the file size is false. Propagate it to progress-reporter/file as it used to be the case. * guix/scripts/challenge.scm (call-with-nar): Accept false size.
2021-05-20gnu: r-lme4: Update to 1.1-27.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-27. [propagated-inputs]: Remove r-statmod.
2021-05-20gnu: r-diptest: Update to 0.76-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-diptest): Update to 0.76-0.
2021-05-20gnu: r-statmod: Update to 1.4.36.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.36.
2021-05-20gnu: r-viridis: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.1.
2021-05-20gnu: r-rmarkdown: Update to 2.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.8.
2021-05-20gnu: r-hms: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hms): Update to 1.1.0.
2021-05-20gnu: r-devtools: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.1. [propagated-inputs]: Remove r-jsonlite.
2021-05-20gnu: r-dplyr: Update to 1.0.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.6. [propagated-inputs]: Add r-pillar.
2021-05-20gnu: r-tibble: Update to 3.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.2.
2021-05-20gnu: r-stringi: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringi): Update to 1.6.2.
2021-05-20gnu: r-matrix: Update to 1.3-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-3.
2021-05-20gnu: r-pdftools: Update to 3.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pdftools): Update to 3.0.1.
2021-05-20gnu: r-textshaping: Update to 0.3.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.4.
2021-05-20gnu: r-seuratobject: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-seuratobject): Update to 4.0.1. [propagated-inputs]: Remove r-sctransform.
2021-05-20gnu: r-rsample: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsample): Update to 0.1.0. [propagated-inputs]: Add r-lifecycle.
2021-05-20gnu: r-clusterr: Update to 1.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.4.
2021-05-20gnu: r-rfast: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rfast): Update to 2.0.3.
2021-05-20gnu: r-oai: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-oai): Update to 0.3.2. [native-inputs]: Add r-knitr.
2021-05-20gnu: r-proxyc: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-proxyc): Update to 0.2.0.
2021-05-20gnu: r-caret: Update to 6.0-88.Ricardo Wurmus
* gnu/packages/cran.scm (r-caret): Update to 6.0-88.
2021-05-20gnu: r-bio3d: Update to 2.4-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-2. [native-inputs]: Add r-knitr.
2021-05-20gnu: r-terra: Update to 1.2-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-terra): Update to 1.2-10.
2021-05-20gnu: r-systemfonts: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 1.0.2.
2021-05-20gnu: r-ibreakdown: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ibreakdown): Update to 2.0.1.
2021-05-20gnu: r-ggplotify: Update to 0.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.7.
2021-05-20gnu: r-msigdbr: Update to 7.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-msigdbr): Update to 7.4.1. [propagated-inputs]: Add r-babelgene.
2021-05-20gnu: r-pegas: Update to 1.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pegas): Update to 1.0-1.
2021-05-20gnu: r-valr: Update to 0.6.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-valr): Update to 0.6.3.
2021-05-20gnu: r-irkernel: Update to 1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-irkernel): Update to 1.2.
2021-05-20gnu: r-fields: Update to 12.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-fields): Update to 12.3. [propagated-inputs]: Add r-viridis.
2021-05-20gnu: r-rnifti: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rnifti): Update to 1.3.1.
2021-05-20gnu: r-softimpute: Update to 1.4-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-softimpute): Update to 1.4-1. [native-inputs]: Add r-knitr.
2021-05-20gnu: r-fmsb: Update to 0.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.1.
2021-05-20gnu: r-ouch: Update to 2.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-ouch): Update to 2.17.
2021-05-20gnu: r-biocmanager: Update to 1.30.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.15.
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