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2018-03-02environment: Add --link-profile.Mike Gerwitz
This change is motivated by attempts to run programs (like GNU IceCat) within containers. The 'fontconfig' program, for example, is configured explicitly to check ~/.guix-profile for additional fonts. There were no existing container tests in 'tests/guix-environment.sh', but I added one anyway for this change. * doc/guix.texi (Invoking guix environment): Add '--link-profile'. * guix/scripts/environment.scm (show-help): Add '--link-profile'. (%options): Add 'link-profile' as '#\P', assigned to 'link-profile?'. (link-environment): New procedure. (launch-environment/container): Use it when 'link-profile?'. [link-profile?]: New parameter. (guix-environment): Leave when '--link-prof' but not '--container'. Add '#:link-profile?' argument to 'launch-environment/container' application. * tests/guix-environment-container.sh: New '--link-profile' test. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-02gnu: icecat: Add more fixes from upstream mozilla-esr52.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository.
2018-03-02gnu: icecat: Update to 52.6.0-gnu1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1. [source]: Remove patches that are no longer needed. * gnu/packages/patches/icecat-bug-1348660-pt5.patch, gnu/packages/patches/icecat-bug-1414945.patch, gnu/packages/patches/icecat-bug-1415133.patch, gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2018-03-01gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058].Leo Famulari
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
2018-03-01gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058].Leo Famulari
* gnu/packages/databases.scm (postgresql): Update to 10.3.
2018-03-01gnu: memcached: Update to 1.5.6.Leo Famulari
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
2018-03-01gnu: linux-libre: Update to 4.15.7.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.7. (%linux-libre-hash): Update hash.
2018-03-01gnu: linux-libre@4.14: Update to 4.14.23.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.23. (%linux-libre-4.14-hash): Update hash.
2018-03-01gnu: linux-libre@4.9: Update to 4.9.85.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.85.
2018-03-01gnu: linux-libre@4.4: Update to 4.4.119.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.119.
2018-03-01gnu: php: Fix test failure.Julien Lepiller
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php. (gd-for-php): New private variable. * gnu/packages/patches/gd-CVE-2018-5711.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-03-01gnu: sdcc: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/sdcc.scm (sdcc)[description]: Fix (upstream) typo. Add hyphens.
2018-03-01gnu: sdcc: Update to 3.7.0.Tobias Geerinckx-Rice
* gnu/packages/sdcc.scm (sdcc): Update to 3.7.0.
2018-03-01gnu: php: Update to 7.2.3.Tobias Geerinckx-Rice
* gnu/packages/php.scm (php): Update to 7.2.3.
2018-03-01gnu: python-stem: Update to 1.6.0.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-stem): Update to 1.6.0. [arguments]: Add ‘fix-test-environment’ phase.
2018-03-01gnu: onionshare: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (onionshare)[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
2018-03-01gnu: privoxy: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (privoxy)[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
2018-03-01gnu: python-stem: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-stem)[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
2018-03-01gnu: liblo: Update to 0.29.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (liblo): Update to 0.29.
2018-03-01gnu: nagios: Update to 4.3.4.Tobias Geerinckx-Rice
* gnu/packages/monitoring.scm (nagios): Update to 4.3.4.
2018-03-01gnu: libftdi: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/libftdi.scm (libftdi)[home-page]: Use HTTPS.
2018-03-01gnu: dbacl: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (dbacl)[home-page]: Use HTTPS.
2018-03-01gnu: dbacl: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-01gnu: Graft glibc to allow execution on Linux 2.6.32.Ricardo Wurmus
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc/linux)[replacement]: New field. (glibc-2.26-patched): New variable.
2018-03-01gnu: r-httpuv: Update to 1.3.6.1.Ricardo Wurmus
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
2018-03-01gnu: r-lubridate: Update to 1.7.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
2018-03-01gnu: r-tidyselect: Update to 0.2.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
2018-03-01gnu: r-rmarkdown: Update to 1.9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
2018-03-01gnu: r-rcpparmadillo: Update to 0.8.400.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
2018-03-01gnu: r-yaml: Update to 2.1.17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
2018-03-01gnu: r-gdtools: Update to 0.1.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7. [inputs]: Add zlib.
2018-03-01gnu: r-rpart: Update to 4.1-13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
2018-03-01gnu: r-mass: Update to 7.3-49.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
2018-03-01gnu: r-rmysql: Update to 0.10.14.Ricardo Wurmus
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
2018-03-01gnu: r-pillar: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
2018-03-01gnu: r-truncnorm: Update to 1.0-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
2018-03-01gnu: r-scran: Update to 1.6.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
2018-03-01gnu: r-wgcna: Update to 1.63.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
2018-03-01gnu: r-topgo: Update to 2.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
2018-03-01gnu: r-genomicranges: Update to 1.30.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
2018-03-01gnu: r-limma: Update to 3.34.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
2018-03-01gnu: r-edger: Update to 3.20.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
2018-03-01gnu: r-shortread: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01gnu: r-dexseq: Update to 1.24.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
2018-03-01gnu: efl: Use separate "include" output.Efraim Flashner
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
2018-03-01gnu: efl: Update to 1.20.7.Efraim Flashner
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
2018-03-01gnu: Add patchmatrix.Ricardo Wurmus
* gnu/packages/music.scm (patchmatrix): New variable.
2018-03-01gnu: ghc-uuid: Fix build.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer version of QuickCheck.
2018-03-01gnu: golly: Fix source url.Christopher Lemmer Webber
* gnu/packages/games.scm (golly): Fix source url.
2018-03-01gnu: imagemagick: Update to 6.9.9-36.Marius Bakke
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
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