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2023-04-18gnu: r-enrichplot: Update to 1.18.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.4.
2023-04-18gnu: r-structuralvariantannotation: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.14.1.
2023-04-18gnu: r-rhdf5: Update to 2.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.42.1.
2023-04-18gnu: openmw-scenegraph: Fix build.Efraim Flashner
* gnu/packages/graphics.scm (openmw-scenegraph)[outputs]: Only use 'out' output. [arguments]: Delete inherited 'copy-plugins phase.
2023-04-18gnu: repo2docker: Add missing inputs.Efraim Flashner
* gnu/packages/jupyter.scm (repo2docker)[inputs]: Add python-iso8601, python-chardet.
2023-04-18gnu: kwin: Update skipped test list.Efraim Flashner
* gnu/packages/kde-plasma.scm (kwin)[arguments]: Update custom 'check phase with new list of skipped tests.
2023-04-18gnu: kwin: Rewrite skipped tests to be more readable.Efraim Flashner
* gnu/packages/kde-plasma.scm (kwin)[arguments]: Rewrite skipped tests in custom 'check phase to be easier to read.
2023-04-18gnu: emacs-osm: Do not mix home-page and origin.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-osm)[source]<origin>: Do not use home-page value as origin.
2023-04-18gnu: emacs-osm: Update to 0.11.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.11.
2023-04-18gnu: emacs-marginalia: Update to 1.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 1.2.
2023-04-18gnu: emacs-envrc: Add DIRENV as an input.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-envrc)[arguments]<#:phases>: Set direnv executable location. <#:tests?, #:test-command>: Tentatively run tests, without success. At least, they do not complain "direnv" executable is nowhere to be found. [inputs]: Add DIRENV.
2023-04-18gnu: emacs-envrc: Update to 0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-envrc): Update to 0.5.
2023-04-18gnu: emacs-cape: Update to 0.15.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 0.15.
2023-04-18gnu: emacs-autothemer: Run tests.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[arguments]: Run tests.
2023-04-18gnu: emacs-autothemer: Update to 0.2.17.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-autothemer): Update to 0.2.17.
2023-04-18gnu: Add texlive-totpages.Matthieu Lemerre
* gnu/packages/tex.scm (texlive-totpages): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-18gnu: texlive-latex-lastpage: Replace with texlive-lastpage.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-lastpage): New variable. (texlive-latex-lastpage): Deprecate variable.
2023-04-18gnu: texlive-latex-totcount: Replace with texlive-totcount.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-totcount): New variable. (texlive-latex-totcount): Deprecate package.
2023-04-18gnu: texlive-latex-acronym: Replace with texlive-acronym.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-latex-acronym): Deprecate package. (texlive-acronym): New variable.
2023-04-18gnu: texlive-latex-bigfoot: Replace with texlive-bigfoot.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-bigfoot): New variable. (texlive-latex-bigfoot): Deprecate package. (texlive-pstool): Use new variable.
2023-04-18gnu: Add texlive-relsize.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-relsize): New variable.
2023-04-18gnu: Add texlive-ncctools.Nicolas Goaziou
* gnu/packages/tex.scm (texlive-ncctools): New variable.
2023-04-18gnu: r-with-tests: Update to 4.2.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.3.
2023-04-18snippets: tempel: Simplify git-commit-mode detection.Nicolas Graves
* etc/snippets/tempel/text-mode: Simplify git-commit-mode detection. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-04-18gnu: emacs-next: Update to 29.0.90.Liliana Marie Prikler
* gnu/packages/emacs.scm (emacs-next): Update to 29.0.90.
2023-04-17gnu: qemu: Update to 7.2.1.Maxim Cournoyer
* gnu/packages/virtualization.scm (qemu): Update to 7.2.1.
2023-04-17gnu: python-pytest-trio: Update to 0.8.0.Maxim Cournoyer
* gnu/packages/python-check.scm (python-pytest-trio): Update to 0.8.0. [arguments]: New relax-requirements phase. Delete extraneous add-installed-pythonpath call. Disable two new tests. Reported-by: jgart <jgart@dismail.de>
2023-04-17gnu: audacity: Update to 3.3.0-beta-1.Maxim Cournoyer
* gnu/packages/audio.scm (audacity): Update to 3.3.0-beta-1. [source]: Delete trailing #t in snippet. [arguments]: Update fix-cmake-rpath phase. Reported-by: tschilptschilp23 on #guix.
2023-04-17gnu: remmina: Update to 1.4.29.TakeV
* gnu/packages/vnc.scm (remmina): Update to 1.4.29. [inputs]: Add PYTHON-MINIMAL-WRAPPER. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-17gnu: usbutils: Use G-Expressions.Bruno Victal
* gnu/packages/linux.scm (usbutils): Use G-Expressions. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-17gnu: usbutils: Make package description different from synopsis.mikadoZero
* gnu/packages/linux.scm (usbutils)[description]: Change package description. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-17gnu: Add kitsas.Saku Laesvuori
* gnu/packages/finance.scm (kitsas): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-17ssh: Silence remote daemon messages when sending store items.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/61839>. Previously, when running 'guix-daemon --debug' on the remote machine, lots of debugging outputs would be printed to stderr; since the client wouldn't read it, we could eventually reach a deadlock where the 'guix repl' process would be stuck writing to stderr while the client is stuck waiting on its stdout. * guix/ssh.scm (store-import-channel)[import]: Parameterize 'current-build-output-port'.
2023-04-17substitute: Download nar from another server upon ETIMEDOUT.Ludovic Courtès
Previously, 'guix substitute' would fail abruptly with something like: guix substitute: warning: while fetching https://ci.guix.gnu.org/nar/lzip/…-example: server is somewhat slow guix substitute: warning: try `--no-substitutes' if the problem persists guix substitute: error: connect*: Connection timed out substitution of /gnu/store/…-example failed * guix/scripts/substitute.scm (network-error?): Add ETIMEDOUT.
2023-04-17services: agetty: 'term-console' succeeds by default.Ludovic Courtès
Previously, on a typical setup without "console=ttyS0" or similar in 'kernel-arguments', the 'term-console' Shepherd service would always be marked as failing to start. This is undesirable because it raises a false alarm: the service is expected to do nothing in this case. This patch instead marks it as succeeding and logs a message explaining it's doing nothing. * gnu/services/base.scm (agetty-shepherd-service): In 'start' method, succeed when TTY is #f and print a message.
2023-04-17environment: Really auto-load (guix scripts pack).Ludovic Courtès
Fixes a performance regression on cache hits introduced in b31ea797edb4f6e8c14e8fe790da1319607c5cb1, whereby (guix scripts pack) would be loaded eagerly during startup, leading hundreds of (gnu packages *) modules to be loaded. Fixes <https://issues.guix.gnu.org/62899>. * guix/scripts/environment.scm: Autoload (gnu build install). (%options): Add indirection when calling 'symlink-spec-option-parser' so that (guix scripts pack) is auto-loaded only when needed.
2023-04-17gnu: Add converseen.Nicolas Goaziou
* gnu/packages/image.scm (converseen): New variable. * gnu/packages/patches/converseen-hide-non-free-pointers.patch: * gnu/packages/patches/converseen-hide-updates-checks.patch: New files. * gnu/local.mk: Register files above.
2023-04-17gnu: gqrx: Update to 2.15.10.Guillaume Le Vaillant
* gnu/packages/radio.scm (gqrx): Update to 2.15.10.
2023-04-17gnu: wfview: Update to 1.62.Sharlatan Hellseher
* gnu/packages/radio.scm (wfview): Update to 1.62. Use Gexp, shift order of components. [inputs]: Add hidapi, qtgamepad. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-04-17gnu: guix-build-coordinator: Update to 0-78.2efcd8b.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-78.2efcd8b.
2023-04-17self: Restructure accessing packages.Christopher Baines
Both for consistency (always use specification->package as defined in this module) and so that all the packages that are used can be accessed (which comes in useful when applying grafts). * guix/self.scm (%packages): New variable. (specification->package): Use %packages. (locale-data, translate-texi-manuals, info-manual, guix-command, compiled-guix): Use specification->package. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-04-17packages: Export guile-for-grafts.Christopher Baines
So this can be used in (guix self). * guix/packages.scm (guile-for-grafts): Export. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-04-17gnu: emacs-wordgen: Fix build on 32-bit platforms.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-wordgen)[arguments]<#:emacs>: Use EMACS-WIDE-INT on 32-bit platforms.
2023-04-17gnu: r-mixedpower: Update to b2b87068.Lars-Dominik Braun
* gnu/packages/statistics.scm (r-mixedpower): Update to commit b2b87068546327d8f592d141e5482e0478c1b2ee, remove patch. * gnu/packages/patches/r-mixedpower-r2power.patch: Remove file. * gnu/local.mk: Unregister it.
2023-04-17gnu: Add r-littler.Kyle Andrews
* gnu/packages/cran.scm (r-littler): New variable.
2023-04-17gnu: Add r-demuxmix.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-demuxmix): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-17gnu: Add r-demultiplex2.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-17gnu: r-simr: Update to 1.0.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-simr): Update to 1.0.7.
2023-04-17gnu: r-quantreg: Update to 5.95.Ricardo Wurmus
* gnu/packages/statistics.scm (r-quantreg): Update to 5.95.
2023-04-17gnu: r-deoptimr: Update to 1.0-12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-12.