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2022-09-20gnu: r-palmerpenguins: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-palmerpenguins): Update to 0.1.1.
2022-09-20gnu: r-paletteer: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-paletteer): Update to 1.4.1.
2022-09-20gnu: r-haven: Update to 2.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-haven): Update to 2.5.1.
2022-09-20gnu: r-shinyfiles: Update to 0.9.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.3.
2022-09-20gnu: r-modelr: Update to 0.1.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-modelr): Update to 0.1.9.
2022-09-20gnu: r-readxl: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-readxl): Update to 1.4.1.
2022-09-20gnu: r-callr: Update to 3.7.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 3.7.2.
2022-09-20gnu: r-reprex: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-reprex): Update to 2.0.2. [propagated-inputs]: Add r-lifecycle.
2022-09-20gnu: r-rvest: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-rvest): Update to 1.0.3. [propagated-inputs]: Add r-cli, r-glue, and r-withr.
2022-09-20gnu: r-astsa: Update to 1.16.Ricardo Wurmus
* gnu/packages/cran.scm (r-astsa): Update to 1.16.
2022-09-20gnu: r-poorman: Update to 0.2.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-poorman): Update to 0.2.6.
2022-09-20gnu: r-scales: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-scales): Update to 1.2.1.
2022-09-20gnu: r-ggpmisc: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.0. [propagated-inputs]: Add r-confintr.
2022-09-20gnu: r-ggvenndiagram: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.2.2. [propagated-inputs]: Remove r-stringr; add r-yulab-utils.
2022-09-20gnu: r-zoo: Update to 1.8-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoo): Update to 1.8-11.
2022-09-20gnu: r-babelwhale: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-babelwhale): Update to 1.1.0. [propagated-inputs]: Add r-digest, r-fs, and r-glue.
2022-09-20gnu: r-rticles: Update to 0.24.Ricardo Wurmus
* gnu/packages/cran.scm (r-rticles): Update to 0.24.
2022-09-20gnu: r-googlesheets4: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.1.
2022-09-20gnu: r-dixontest: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-dixontest): Update to 1.0.4.
2022-09-20gnu: r-datawizard: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.6.0.
2022-09-20gnu: r-activedriverwgs: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
2022-09-20gnu: r-htscluster: Update to 2.0.10.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
2022-09-20gnu: r-perfmeas: Update to 1.2.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
2022-09-20gnu: r-valr: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
2022-09-20gnu: r-httpuv: Update to 1.6.6.Ricardo Wurmus
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Replace this patch... * gnu/packages/patches/r-httpuv-1.6.6-unvendor-libuv.patch: ...with this. * gnu/local.mk (dist_patch_DATA): Update patch file. * gnu/packages/cran.scm (r-httpuv): Update to 1.6.6. [source]: Update patch.
2022-09-20gnu: r-dt: Update to 0.25.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.25; update jszip to 3.10.1.
2022-09-20gnu: r-torch: Update to 0.8.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-torch): Update to 0.8.1.
2022-09-20gnu: r-torch: Do not hardcode Python version.Ricardo Wurmus
* gnu/packages/cran.scm (r-torch)[arguments]: Do not hardcode Python version 3.9.
2022-09-20gnu: liblantern: Update to 0.8.1.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.1.
2022-09-20gnu: liblantern: Do not hardcode Python version.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern)[arguments]: Do not hardcode Python version.
2022-09-20gnu: r-arrow: Update to 9.0.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 9.0.0.1.
2022-09-20gnu: apache-arrow: Update to 9.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 9.0.0.
2022-09-20gnu: r-rintrojs: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.2.
2022-09-20gnu: Add r-confintr.Ricardo Wurmus
* gnu/packages/cran.scm (r-confintr): New variable.
2022-09-20gnu: rust-sprs-0.10: Inherit from rust-sprs-0.11.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-sprs-0.10): Inherit from rust-sprs-0.11.
2022-09-20gnu: Add rust-sprs-0.11.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-sprs-0.11): New variable.
2022-09-20gnu: Add rust-sprs-0.10.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-sprs-0.10): New variable.
2022-09-20gnu: Add rust-tobj-2.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-tobj-2): New variable.
2022-09-20gnu: Add rust-tobj-3.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-tobj-3): New variable.
2022-09-20gnu: Add rust-linecount-0.1.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-linecount-0.1): New variable.
2022-09-20gnu: icecat: Update to 102.3.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2022-40956, CVE-2022-40957, CVE-2022-40958, CVE-2022-40959, CVE-2022-40960, and CVE-2022-40962. Partly based on earlier work by: Jonathan Brielmaier <jonathan.brielmaier@web.de> John Kehayias <john.kehayias@protonmail.com> Pierre Langlois <pierre.langlois@gmx.com> Clement Lassieur <clement@lassieur.org> * gnu/packages/gnuzilla.scm (all-mozilla-locales) (%icecat-version, %icecat-build-id): Update. (icecat-source): Update upstream source hash. Update to latest gnuzilla commit. Remove the code that previously applied "icecat-use-older-reveal-hidden-html.patch". (icecat)[inputs]: Use icu4c-71. [native-inputs]: Use rust-1.59. Use the default llvm and clang. [arguments]: Add "--without-wasm-sandboxed-libraries" to the configure flags. Add 'remove-cargo-frozen-flag' phase. In the 'configure' phase, set the "MACH_BUILD_PYTHON_NATIVE_PACKAGE_SOURCE", "GUIX_PYTHONPATH", and "MOZBUILD_STATE_PATH" environment variables. Remove the code that previously set the "MACH_USE_SYSTEM_PYTHON" and "MOZ_NOSPAM" environment variables. In the 'install-desktop-entry' phase, add "StartupWMClass=Navigator" to the desktop file. [description]: "IceCat 91" --> "IceCat 102". (all-mozilla-91-locales, %icecat-91-version, icecat-91-source): New variables bound to the old values, for use by icedove. (icedove)[source]: Ues 'icecat-91-source'.
2022-09-20gnu: Add rust-cbindgen-0.23 and its dependencies to gnuzilla.scm.Mark H Weaver
This will be needed to build IceCat 102. * gnu/packages/gnuzilla.scm (rust-textwrap-0.15-promise) (rust-clap-lex-0.2, rust-clap-derive-3.2.15-promise) (rust-clap-3.2.16-promise, rust-cbindgen-0.24-promise) (rust-cbindgen-0.23-promise): New variables. Based on work by: John Kehayias <john.kehayias@protonmail.com>.
2022-09-20gnu: Add rust-1.59 to gnuzilla.scm.Mark H Weaver
This will be needed to build IceCat 102. * gnu/packages/gnuzilla.scm (rust-1.58-promise, rust-1.59-promise): New variables.
2022-09-20gnu: vim: Update to 9.0.0509.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 9.0.0509. [arguments]: Adjust custom 'patch-absolute-paths phase to adjust substitutions.
2022-09-20gnu: tree: Use https.Efraim Flashner
* gnu/packages/admin.scm (tree)[source]: Use https. [home-page]: Same.
2022-09-20gnu: tree: Update to 2.0.4.Efraim Flashner
* gnu/packages/admin.scm (tree): Update to 2.0.4. [arguments]: Add phase to fix the version string in the man page.
2022-09-20gnu: cross: Add default configure-flags.Efraim Flashner
Reported by Arun Isaac <arunisaac@systemreboot.net>. * gnu/packages/cross-base.scm (cross)[arguments]: Add a default for configure-flags so '--target=' is always added.
2022-09-20gnu: Add sbcl-stumpwm-pamixer.Trevor Richards
* gnu/packages/wm.scm (sbcl-stumpwm-pamixer): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-09-19gnu: evolution: Update to 3.46.0.Liliana Marie Prikler
* gnu/packages/gnome.scm (evolution): Update to 3.46.0.
2022-09-19gnu: evolution-data-server: Update to 3.46.0.Liliana Marie Prikler
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.46.0.
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