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Fixes <http://bugs.gnu.org/22139>.
* guix/grafts.scm (graft-derivation): Rename to...
(graft-derivation/shallow): ... this.
(graft-origin-file-name, item->deriver, non-self-references)
(cumulative-grafts, graft-derivation): New procedures
* tests/grafts.scm ("graft-derivation, grafted item is a direct
dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer
to the grafted derivation.
("graft-derivation, grafted item is an indirect dependency")
("graft-derivation, no dependencies on grafted output"): New tests.
* guix/packages.scm (input-graft): Change to take a package instead of
an input.
(input-cross-graft): Likewise.
(fold-bag-dependencies): New procedure.
(bag-grafts): Rewrite in terms of 'fold-bag-dependencies'.
* tests/packages.scm ("package-derivation, indirect grafts"): Comment out.
* doc/guix.texi (Security Updates): Mention run-time dependencies and
recursive grafting.
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* gnu/packages/game-development.scm (tiled)[arguments]: Use 'modify-phases'.
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* gnu/packages/game-development.scm (tiled): Update to 0.15.1.
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* gnu/packages/bioinformatics.scm (pepr): New variable.
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* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
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* gnu/packages/datastructures.scm (gdsl): New variable.
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* gnu/packages/weechat.scm (weechat): Move from here ...
* gnu/packages/irc.scm (weechat): ... to here.
* gnu/packages/weechat.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm.
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* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'.
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* gnu/packages/irssi.scm (irssi): Move from here ...
* gnu/packages/irc.scm (irssi): ... to here.
* gnu/packages/irssi.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm.
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* gnu/packages/irc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
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* gnu/packages/kde.scm (snorenotify): New variable.
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* gnu/packages/kde.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
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* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable.
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* gnu/packages/games.scm (desmume): New variable.
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* gnu/packages/curl.scm (curl)[inputs]: Use libssh2.
* gnu/packages/ssh.scm (libssh2-1.4): Remove variable.
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python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533). Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.
* gnu/packages/python.scm (python2-pil): Remove variable.
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* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]:
Use the same search paths as guile-2.0.
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* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts.
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This reduces nar size by a factor of 10.
Fixes <http://bugs.gnu.org/21949>.
* gnu/packages/version-control.scm (git)[arguments]: Pass
NO_INSTALL_HARDLINKS as #:make-flags.
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* gnu/packages/gnome.scm (libwnck-1): Rename this...
(libwnck-2): ...to this.
* gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session,
xfwm4, xfdesktop)[inputs]: Adapt.
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* gnu/packages/xorg.scm (xrandr): Update to 1.5.0.
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* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8.
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* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0.
[arguments]: Disable parallel tests.
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* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0.
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* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
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* gnu/packages/python.scm (python-backports-abc): New variable.
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* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
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Before that, outputs of a derivation could be left referring to the
ungrafted version of the derivation.
* guix/grafts.scm (graft-derivation)[outputs]: Change to a list of
name/file pairs.
* guix/grafts.scm (graft-derivation)[build]: Add 'old-outputs' variable
and use it when computing 'mapping'. Use 'mapping' directly.
* tests/grafts.scm ("graft-derivation, multiple outputs"): New test.
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* guix/grafts.scm (graft-derivation)[output-names]: Use
'derivation-output-names'.
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* guix/build/graft.scm (rewrite-directory): Add 'umask' call.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
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* gnu/packages/xdisorg.scm (arandr)[inputs]: Add "xrandr".
[arguments]: Add build phase "make-xrandr-available" to ensure "xrandr"
executable is found at runtime.
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Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.
* gnu/packages/base.scm (patch, gnu-make),
gnu/packages/bioinformatics.scm (hmmer),
gnu/packages/bittorrent.scm (aria2),
gnu/packages/compression.scm (pbzip2),
gnu/packages/databases.scm (recutils),
gnu/packages/fonts.scm (font-terminus),
gnu/packages/freedesktop.scm (xdg-utils, elogind),
gnu/packages/games.scm (gnujump),
gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
gnu/packages/gnunet.scm (gnunet),
gnu/packages/gnuzilla.scm (mozjs, nspr),
gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
gnu/packages/lua.scm (lua),
gnu/packages/openstack.scm (python-swiftclient),
gnu/packages/perl.scm (perl-json-any),
gnu/packages/polkit.scm (polkit-qt),
gnu/packages/python.scm (wrap-python3, python-oauthlib)
(python-mccabe-0.2.1, python-contextlib2, python2-rauth),
gnu/packages/qt.scm (qtkeychain),
gnu/packages/ruby.scm (ruby-nokogiri),
gnu/packages/screen.scm (screen),
gnu/packages/ssh.scm (libssh),
gnu/packages/video.scm (ffmpeg, mplayer),
gnu/packages/vim.scm (vim),
gnu/packages/xdisorg.scm (redshift),
gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
gnu/packages/xnee.scm (xnee),
gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
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* gnu/packages/emacs.scm (emacs-god-mode): New variable.
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* gnu/packages/music.scm (gtklick): New variable.
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* gnu/packages/gtk.scm (python2-pygtk)[inputs]: Add "libglade".
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* gnu/packages/audio.scm (python-pyliblo, python2-pyliblo): New
variables.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.18.
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* gnu/packages/linux.scm (linux-libre): Update to 4.4.3.
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* guix/import/github.scm: New file.
* guix/scripts/refresh.scm (%updaters): Add %GITHUB-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention it.
* Makefile.am (MODULES): Add gnu/import/github.scm.
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* guix/store.scm (read-path-info): Use #f when we get the empty string
for DERIVER.
* guix/scripts/publish.scm (narinfo-string): Adjust accordingly.
* tests/store.scm ("path-info-deriver"): New test.
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* guix/grafts.scm (write-graft): New procedure. Register it as a
printer for <graft>.
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* doc/guix.texi (Running GuixSD in a VM): Capitalize section title.
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* gnu/packages/gtk.scm (gtk-doc)[arguments]: In the 'fix-docbook' phase,
avoid hard-coding the docbook-xsl version number, and return #t.
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* gnu/packages/python.scm (python-psycopg2, python2-psycopg2): New variables.
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* gnu/packages/package-management.scm (diffoscope): Update to 49.
[source]: Use pypi-uri.
[arguments]: Use python-3. Enable tests. Add 'dependency-on-python-magic' phase
and remove 'dependency-on-rpm' phase.
[native-inputs]: Remove python2-setuptools.
[inputs]: Replace python2-file, python2-debian, python2-libarchive-c,
python2-tlsh, python2-pytest, python2-chardet with python-3 variants.
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* gnu/packages/gnome.scm (dconf-editor): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/video.scm (libx264): Download via HTTP. The videolan ftp
server does not work with IPv6.
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* gnu/packages/gtk.scm (gtk-doc): Fix build.
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