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2023-03-03services: dbus: Deprecate 'polkit-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'polkit-service' with 'polkit-service-type'. * gnu/services/dbus.scm (polkit-service): Deprecate procedure. * gnu/tests/docker.scm (%docker-os): Use polkit-service-type. * gnu/tests/virtualization.scm (%libvirt-os): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'accountsservice-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'accountsservice-service' with 'accountsservice-service-type'. * gnu/services/desktop.scm (accountsservice-service): Deprecate procedure. (desktop-services-for-system): Use accountsservice-service-type. * gnu/tests/lightdm.scm (minimal-desktop-services): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: elogind-configuration: Do not ignore 'handle-hibernate-key' by ↵Bruno Victal
default. * gnu/services/desktop.scm (<elogind-configuration>)[handle-hibernate-key]: Set default value to 'hibernate. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'elogind-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'elogind-service' with 'elogind-service-type'. * gnu/services/desktop.scm (elogind-service): Deprecate procedure. (desktop-services-for-system): Use elogind-service-type. * gnu/tests/lightdm.scm (minimal-desktop-services): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: ssh: Deprecate 'dropbear-service' procedure.Bruno Victal
* doc/guix.texi (Networking Services): Replace 'dropbear-service' with 'dropbear-service-type'. * gnu/services/ssh.scm (dropbear-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: ssh: Deprecate 'lsh-service' procedure.Bruno Victal
* doc/guix.texi (Networking Services): Remove mention of lsh-service. Document lsh-service-type and lsh-service-configuration. * gnu/services/ssh.scm (<lsh-configuration>): Set default values based on the now deprecated 'lsh-service' procedure. (lsh-service-type): Set default value. (lsh-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'rngd-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace rngd-service with rngd-service-type. Document <rngd-configuration>. * gnu/services/base.scm (<rngd-configuration>): Set default values from the values in the now deprecated 'rngd-service' procedure. (rngd-service): Deprecate procedure. (rngd-service-type): Set default value. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'udev-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace udev-service with udev-service-type. Document <udev-configuration>. Use @defun @-commands for udev-rules-service, udev-rule and file->udev-rule. * gnu/services/base.scm (udev-service): Deprecate procedure. * gnu/system/install.scm (%installation-services): Use udev-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'syslog-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace syslog-service with syslog-service-type. * gnu/services/base.scm (%default-syslog.conf): Place before <syslog-configuration>. (syslog-service-type): Set default value. (syslog-service): Deprecate procedure. (%base-services): Use syslog-service-type. * gnu/system/hurd.scm (%base-services/hurd): Ditto. * gnu/system/install.scm (%installation-services): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'nscd-service' procedure.Bruno Victal
* doc/guix.texi (Application Setup): Compress @cindex entries. (Base Services): Compress @cindex entries. Delete %nscd-default-configuration. Replace 'nscd-service' with 'nscd-service-type'. * gnu/services/base.scm (%nscd-default-configuration): Deprecate variable. (nscd-service): Deprecate procedure. * gnu/system/install.scm (%installation-services): Use nscd-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03doc: kmscon-service-type: Use @defvar @-command.Bruno Victal
* doc/guix.texi (Base Services): Use @defvar @-command for kmscon-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'agetty-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace agetty-service with agetty-service-type. * gnu/services/base.scm (agetty-service): Deprecate procedure. * gnu/system/examples/beaglebone-black.tmpl (operating-system)[services]: Use agetty-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'mingetty-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace mingetty-service with mingetty-service-type. * gnu/services/base.scm (mingetty-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'login-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace with login-service-type. * gnu/services/base.scm (login-service): Deprecate procedure. * gnu/system/install.scm (%installation-services): Use login-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'host-name-service' procedure.Bruno Victal
* doc/guix.texi (operating-system Reference): Reorder cross-reference. Add an anchor to be used ... (Base services): ... here by host-name-service-type. Document host-name-service-type. * gnu/services/base.scm: Export host-name-service-type. (host-name-service): Deprecate procedure. * gnu/system.scm (operating-system-default-essential-services): Use host-name-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add r-seurat-utils.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
2023-03-03gnu: Add r-hgnchelper.Navid Afkhami
* gnu/packages/cran.scm (r-hgnchelper): New variable.
2023-03-03gnu: Add r-tictoc.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-tictoc): New variable.
2023-03-03gnu: Add r-ggexpress.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-ggexpress): New variable.
2023-03-03gnu: Add r-markdownreports.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-markdownreports): New variable.
2023-03-03gnu: Add r-markdownhelpers.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-markdownhelpers): New variable.
2023-03-03gnu: Add r-codeandroll2.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-codeandroll2): New variable.
2023-03-03gnu: Add r-readwriter.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-readwriter): New variable.
2023-03-03gnu: Add r-stringendo.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-stringendo): New variable.
2023-03-03gnu: Add julia-astrotime.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-astrotime): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-muladdmacro.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-muladdmacro): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-itemgraphs.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-itemgraphs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-lightgraphs.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-lightgraphs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-arnoldimethod.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-arnoldimethod): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-inflate.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-inflate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-earthorientation.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-earthorientation): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-remotefiles.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-remotefiles): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-optionaldata.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-optionaldata): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-leapseconds.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-leapseconds): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03git-download: Apply Git attributes on checkouts coming from SWH.Ludovic Courtès
Fixes a bug whereby CR/LF conversion, for instance, would not be applied on Git repositories retrieved from SWH: https://sympa.inria.fr/sympa/arc/swh-devel/2023-03/msg00000.html Reported by Simon Tournier <simon.tournier@inserm.fr>. Suggested by Valentin Lorentz <valentin.lorentz@inria.fr>. Co-authored by Simon Tournier <simon.tournier@inserm.fr>. * guix/git-download.scm (git-fetch)[build]: Add Git operations conditioned by '.gitattributes' on the result from SWH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add r-oscope.Navid Afkhami
* gnu/packages/bioconductor.scm (r-oscope): New variable.
2023-03-03gnu: cl-tripod: Fix build.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-tripod)[arguments]: Use the 'assoc-ref' form for the bin output. (cl-tripod)[outputs]: Remove bin. (ecl-tripod)[outputs]: Remove bin. [arguments]: Remove 'build-program' phase.
2023-03-03gnu: eisl: Update to 2.72.Guillaume Le Vaillant
* gnu/packages/lisp.scm (eisl): Update to 2.72. [arguments]: Update 'fix-paths' phase.
2023-03-03gnu: gcl: Update to 2.6.14.Guillaume Le Vaillant
* gnu/packages/lisp.scm (gcl): Update to 2.6.14.
2023-03-03gnu: sbcl: Update to 2.3.2.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl): Update to 2.3.2.
2023-02-26gnu: fish: Update to 3.6.0.Winter
* gnu/packages/shells.scm (fish): Update to 3.6.0. [source]: Remove snippet, as the bundled PCRE2 sources have been removed (see CHANGELOG.rst). Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-02-26file-systems: Validate 'no-diratime flag.Tobias Geerinckx-Rice
This follows up on commit c0773455397746b10194bc14c7cef144f4095b65, and adds a comment to avoid this in future. * gnu/system/file-systems.scm (invalid-file-system-flags): Add 'no-diratime to the list of KNOWN-FLAGS.
2023-02-26gnu: go-github-com-robfig-cron-1.2: Move to (gnu packages golang).Josselin Poiret
Because (gnu packages golang) and (gnu packages check) use each other, this avoids an undefined symbol due to a module dependency cycle. * gnu/packages/check.scm (go-github-com-robfig-cron-1.2): Move to... * gnu/packages/golang.scm (go-github-com-robfig-cron-1.2): ...here. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-03-02gnu: make-mozilla-with-l10n: Use the copy-build-system.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/61742>. * gnu/packages/gnuzilla.scm (make-mozilla-with-l10n): Rewrite to use the copy-build-system. Reported-by: Feng Shu <tumashu@163.com>
2023-03-02gnu: grimshot: Correct man page path.Antero Mejr
* gnu/packages/wm.scm (grimshot)[arguments]: Remove 'usr/' from man page path. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-03-02gnu: Add r-mmuphin.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-mmuphin): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-02gnu: python-acme, certbot: Update to 2.3.0.Jack Hill
* gnu/packages/tls.scm (python-acme): Update to 2.3.0. (certbot)[source]: Update hash. [propagated-inputs]: Remove python-zope-interface and python-zope-component. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-03-02gnu: grub-efi: Remove test inputs.Efraim Flashner
* gnu/packages/bootloaders.scm (grub-efi)[native-inputs]: Remove parted, qemu-minimal, xorriso.
2023-03-02gnu: Add r-chromomap.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-chromomap): New variable.
2023-03-02gnu: libmicrohttpd: Update to 0.9.76.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.76.
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